Multiple sequence alignment - TraesCS7A01G334500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G334500 chr7A 100.000 3201 0 0 1 3201 488151891 488148691 0.000000e+00 5912
1 TraesCS7A01G334500 chr7A 94.016 2373 93 20 640 2967 16155318 16152950 0.000000e+00 3550
2 TraesCS7A01G334500 chr7A 95.473 1922 63 6 532 2450 488486203 488484303 0.000000e+00 3046
3 TraesCS7A01G334500 chr7A 98.716 545 2 1 1 545 488486762 488486223 0.000000e+00 963
4 TraesCS7A01G334500 chr7A 92.793 444 28 1 1 440 43062408 43062851 9.680000e-180 640
5 TraesCS7A01G334500 chr7A 97.908 239 5 0 2963 3201 273961229 273961467 6.390000e-112 414
6 TraesCS7A01G334500 chr7A 97.119 243 6 1 2959 3201 362680970 362681211 2.970000e-110 409
7 TraesCS7A01G334500 chr6A 94.934 2349 92 14 640 2967 561585809 561583467 0.000000e+00 3653
8 TraesCS7A01G334500 chr6A 94.844 2347 96 14 640 2964 561454827 561457170 0.000000e+00 3640
9 TraesCS7A01G334500 chr6A 93.769 2359 109 17 640 2967 561599043 561596692 0.000000e+00 3507
10 TraesCS7A01G334500 chr6A 95.917 1396 53 2 640 2032 16669150 16670544 0.000000e+00 2259
11 TraesCS7A01G334500 chr6A 97.890 237 5 0 2965 3201 58482340 58482104 8.260000e-111 411
12 TraesCS7A01G334500 chr6A 96.386 166 6 0 2802 2967 592859063 592859228 1.130000e-69 274
13 TraesCS7A01G334500 chr6A 88.525 122 12 2 2848 2967 561458431 561458552 2.570000e-31 147
14 TraesCS7A01G334500 chr6A 87.402 127 13 3 2843 2967 561595388 561595263 3.330000e-30 143
15 TraesCS7A01G334500 chrUn 94.072 2176 99 13 640 2807 10231182 10229029 0.000000e+00 3277
16 TraesCS7A01G334500 chrUn 95.181 166 8 0 2802 2967 10228983 10228818 2.450000e-66 263
17 TraesCS7A01G334500 chr1D 91.931 2020 113 27 962 2964 416512216 416514202 0.000000e+00 2782
18 TraesCS7A01G334500 chr1D 87.805 164 19 1 2802 2964 416514088 416514251 1.170000e-44 191
19 TraesCS7A01G334500 chr2A 95.733 1711 62 9 640 2343 128482533 128484239 0.000000e+00 2745
20 TraesCS7A01G334500 chr2A 97.890 237 5 0 2965 3201 680418512 680418276 8.260000e-111 411
21 TraesCS7A01G334500 chr5D 95.423 1311 53 6 1501 2807 292686488 292687795 0.000000e+00 2082
22 TraesCS7A01G334500 chr5D 96.386 166 6 0 2802 2967 292687841 292688006 1.130000e-69 274
23 TraesCS7A01G334500 chr1A 93.915 1134 63 6 640 1770 565658025 565656895 0.000000e+00 1707
24 TraesCS7A01G334500 chr1A 97.908 239 5 0 2963 3201 151504115 151504353 6.390000e-112 414
25 TraesCS7A01G334500 chr1A 98.305 236 4 0 2966 3201 288460380 288460145 6.390000e-112 414
26 TraesCS7A01G334500 chr1A 97.490 239 6 0 2963 3201 106124732 106124970 2.970000e-110 409
27 TraesCS7A01G334500 chr1A 97.490 239 6 0 2963 3201 156416790 156417028 2.970000e-110 409
28 TraesCS7A01G334500 chr7D 95.485 443 17 1 1 440 437638223 437637781 0.000000e+00 704
29 TraesCS7A01G334500 chr7D 89.686 446 36 4 4 440 43204239 43204683 7.750000e-156 560
30 TraesCS7A01G334500 chr7D 79.635 329 49 13 2652 2967 188390544 188390221 1.490000e-53 220
31 TraesCS7A01G334500 chr7D 83.688 141 7 4 498 638 437637683 437637559 5.610000e-23 119
32 TraesCS7A01G334500 chr4A 90.068 443 35 5 4 440 651351368 651351807 1.670000e-157 566
33 TraesCS7A01G334500 chr7B 94.516 310 13 1 1 306 456495764 456496073 2.890000e-130 475
34 TraesCS7A01G334500 chr3A 97.890 237 5 0 2965 3201 591355500 591355264 8.260000e-111 411
35 TraesCS7A01G334500 chr5A 94.479 163 9 0 2802 2964 436267504 436267666 5.300000e-63 252
36 TraesCS7A01G334500 chr2D 87.425 167 20 1 2802 2967 81285978 81286144 1.170000e-44 191


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G334500 chr7A 488148691 488151891 3200 True 5912.0 5912 100.0000 1 3201 1 chr7A.!!$R2 3200
1 TraesCS7A01G334500 chr7A 16152950 16155318 2368 True 3550.0 3550 94.0160 640 2967 1 chr7A.!!$R1 2327
2 TraesCS7A01G334500 chr7A 488484303 488486762 2459 True 2004.5 3046 97.0945 1 2450 2 chr7A.!!$R3 2449
3 TraesCS7A01G334500 chr6A 561583467 561585809 2342 True 3653.0 3653 94.9340 640 2967 1 chr6A.!!$R2 2327
4 TraesCS7A01G334500 chr6A 16669150 16670544 1394 False 2259.0 2259 95.9170 640 2032 1 chr6A.!!$F1 1392
5 TraesCS7A01G334500 chr6A 561454827 561458552 3725 False 1893.5 3640 91.6845 640 2967 2 chr6A.!!$F3 2327
6 TraesCS7A01G334500 chr6A 561595263 561599043 3780 True 1825.0 3507 90.5855 640 2967 2 chr6A.!!$R3 2327
7 TraesCS7A01G334500 chrUn 10228818 10231182 2364 True 1770.0 3277 94.6265 640 2967 2 chrUn.!!$R1 2327
8 TraesCS7A01G334500 chr1D 416512216 416514251 2035 False 1486.5 2782 89.8680 962 2964 2 chr1D.!!$F1 2002
9 TraesCS7A01G334500 chr2A 128482533 128484239 1706 False 2745.0 2745 95.7330 640 2343 1 chr2A.!!$F1 1703
10 TraesCS7A01G334500 chr5D 292686488 292688006 1518 False 1178.0 2082 95.9045 1501 2967 2 chr5D.!!$F1 1466
11 TraesCS7A01G334500 chr1A 565656895 565658025 1130 True 1707.0 1707 93.9150 640 1770 1 chr1A.!!$R2 1130
12 TraesCS7A01G334500 chr7D 437637559 437638223 664 True 411.5 704 89.5865 1 638 2 chr7D.!!$R2 637

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 1.404315 GGACTCGGAACAGTCATGGAC 60.404 57.143 4.59 0.0 44.18 4.02 F
1172 1285 1.338020 CTTTTCTTTGCTTGCTCCCGT 59.662 47.619 0.00 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2000 2115 0.178938 TCCTGCTGGGCATCCAAAAA 60.179 50.0 10.07 0.00 43.51 1.94 R
2979 3285 0.178885 ACCAACTAGGGGTGGCACTA 60.179 55.0 18.45 0.98 43.89 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 1.404315 GGACTCGGAACAGTCATGGAC 60.404 57.143 4.59 0.00 44.18 4.02
425 429 3.396491 GCAGACTGCAGTGAAATGC 57.604 52.632 27.27 22.95 44.26 3.56
631 727 4.691216 GGAACTATGTGAACTTGACAGGTC 59.309 45.833 0.00 0.00 37.24 3.85
668 764 3.196469 TGCAGAAAACCACCACATTGAAA 59.804 39.130 0.00 0.00 0.00 2.69
670 766 4.680440 GCAGAAAACCACCACATTGAAACT 60.680 41.667 0.00 0.00 0.00 2.66
683 779 4.520492 ACATTGAAACTTAGGGTTGCAGAG 59.480 41.667 0.00 0.00 43.63 3.35
757 861 3.971245 TGCAGAAAACACCAAACCTTT 57.029 38.095 0.00 0.00 0.00 3.11
924 1028 3.386237 ACACTCTCGCCTCTGCCC 61.386 66.667 0.00 0.00 0.00 5.36
951 1055 3.831911 CTCTCCTCACTCTGTTCTTCCTT 59.168 47.826 0.00 0.00 0.00 3.36
954 1058 2.903135 CCTCACTCTGTTCTTCCTTCCT 59.097 50.000 0.00 0.00 0.00 3.36
1025 1129 2.649034 GTGGAGCGACGAGACCAA 59.351 61.111 0.00 0.00 34.11 3.67
1155 1268 2.159028 GCTCGATCTGAACCTAGCCTTT 60.159 50.000 0.00 0.00 0.00 3.11
1172 1285 1.338020 CTTTTCTTTGCTTGCTCCCGT 59.662 47.619 0.00 0.00 0.00 5.28
1204 1317 3.848272 ACGATGCACGATCCAAATTTT 57.152 38.095 14.18 0.00 45.77 1.82
1534 1649 7.399245 AAGTTTGGTTAAGTGCTTTGTCTTA 57.601 32.000 0.00 0.00 0.00 2.10
1943 2058 4.431809 CTTTGCAATTCACAACCTGACAA 58.568 39.130 0.00 0.00 0.00 3.18
2000 2115 5.184479 AGTTTGTATGCTGATGTGAATGCTT 59.816 36.000 0.00 0.00 0.00 3.91
2053 2168 5.010617 GGAGTTAACCAATCAAAAGGAGCAA 59.989 40.000 0.88 0.00 0.00 3.91
2060 2175 4.024641 CCAATCAAAAGGAGCAAAAGCAAC 60.025 41.667 0.00 0.00 0.00 4.17
2112 2227 3.214328 CTGTAGTTGGCAACTTGAAGGT 58.786 45.455 35.13 14.10 42.81 3.50
2161 2279 8.602472 AGAAGAAACTACAGGAGAACTATGAT 57.398 34.615 0.00 0.00 0.00 2.45
2198 2316 3.265221 TGTGAATTCTCTCTTGGATGCCT 59.735 43.478 7.05 0.00 0.00 4.75
2479 2598 9.734620 CAGTATCACATTTCTGAGTTTCAAAAA 57.265 29.630 0.00 0.00 0.00 1.94
2513 2632 6.374417 AGATAAAGTTGAAGCTTCAGGGTA 57.626 37.500 27.02 18.02 38.61 3.69
2561 2680 6.820656 GGGTGCCTTCTAGTATGATAATCATG 59.179 42.308 0.00 0.00 37.70 3.07
2654 2773 9.631257 ATGATGAATTTGTGATCTATGGTGTTA 57.369 29.630 0.00 0.00 0.00 2.41
2757 2898 4.371624 TTGTGAGATCAGGTGTTGGATT 57.628 40.909 0.00 0.00 0.00 3.01
2939 3245 5.627735 CATATCGATGATTTGACCCTAGGGG 60.628 48.000 31.70 13.88 41.45 4.79
2967 3273 4.944619 TGAGCCTCATCTTGTCGATATT 57.055 40.909 0.00 0.00 0.00 1.28
2968 3274 6.405278 TTGAGCCTCATCTTGTCGATATTA 57.595 37.500 0.00 0.00 0.00 0.98
2969 3275 6.596309 TGAGCCTCATCTTGTCGATATTAT 57.404 37.500 0.00 0.00 0.00 1.28
2972 3278 8.246871 TGAGCCTCATCTTGTCGATATTATAAG 58.753 37.037 0.00 0.00 0.00 1.73
2973 3279 8.128322 AGCCTCATCTTGTCGATATTATAAGT 57.872 34.615 0.00 0.00 0.00 2.24
2974 3280 8.031864 AGCCTCATCTTGTCGATATTATAAGTG 58.968 37.037 0.00 0.00 0.00 3.16
2975 3281 7.201478 GCCTCATCTTGTCGATATTATAAGTGC 60.201 40.741 0.00 0.00 0.00 4.40
2976 3282 7.814587 CCTCATCTTGTCGATATTATAAGTGCA 59.185 37.037 0.00 0.00 0.00 4.57
2978 3284 9.358872 TCATCTTGTCGATATTATAAGTGCATC 57.641 33.333 0.00 0.00 0.00 3.91
2979 3285 9.363763 CATCTTGTCGATATTATAAGTGCATCT 57.636 33.333 0.00 0.00 0.00 2.90
2982 3288 9.847706 CTTGTCGATATTATAAGTGCATCTAGT 57.152 33.333 0.00 0.00 0.00 2.57
2983 3289 9.626045 TTGTCGATATTATAAGTGCATCTAGTG 57.374 33.333 0.00 0.00 0.00 2.74
2997 3303 0.541863 CTAGTGCCACCCCTAGTTGG 59.458 60.000 0.00 0.00 0.00 3.77
2998 3304 0.178885 TAGTGCCACCCCTAGTTGGT 60.179 55.000 0.00 0.53 36.21 3.67
2999 3305 1.065997 AGTGCCACCCCTAGTTGGTT 61.066 55.000 0.00 0.00 32.46 3.67
3000 3306 0.178973 GTGCCACCCCTAGTTGGTTT 60.179 55.000 0.00 0.00 32.46 3.27
3002 3308 0.966179 GCCACCCCTAGTTGGTTTTG 59.034 55.000 0.00 0.00 32.46 2.44
3003 3309 1.627864 CCACCCCTAGTTGGTTTTGG 58.372 55.000 0.00 0.00 32.46 3.28
3004 3310 1.146152 CCACCCCTAGTTGGTTTTGGA 59.854 52.381 0.00 0.00 32.46 3.53
3005 3311 2.514803 CACCCCTAGTTGGTTTTGGAG 58.485 52.381 0.00 0.00 32.46 3.86
3007 3313 3.073356 CACCCCTAGTTGGTTTTGGAGTA 59.927 47.826 0.00 0.00 32.46 2.59
3008 3314 3.920841 ACCCCTAGTTGGTTTTGGAGTAT 59.079 43.478 0.00 0.00 29.75 2.12
3010 3316 4.705023 CCCCTAGTTGGTTTTGGAGTATTG 59.295 45.833 0.00 0.00 0.00 1.90
3011 3317 5.515886 CCCCTAGTTGGTTTTGGAGTATTGA 60.516 44.000 0.00 0.00 0.00 2.57
3012 3318 6.187682 CCCTAGTTGGTTTTGGAGTATTGAT 58.812 40.000 0.00 0.00 0.00 2.57
3013 3319 6.095440 CCCTAGTTGGTTTTGGAGTATTGATG 59.905 42.308 0.00 0.00 0.00 3.07
3015 3321 6.575162 AGTTGGTTTTGGAGTATTGATGAC 57.425 37.500 0.00 0.00 0.00 3.06
3017 3323 6.549364 AGTTGGTTTTGGAGTATTGATGACAA 59.451 34.615 0.00 0.00 40.42 3.18
3018 3324 6.968263 TGGTTTTGGAGTATTGATGACAAA 57.032 33.333 0.00 0.00 39.54 2.83
3019 3325 6.744112 TGGTTTTGGAGTATTGATGACAAAC 58.256 36.000 0.00 0.00 39.54 2.93
3020 3326 6.156519 GGTTTTGGAGTATTGATGACAAACC 58.843 40.000 0.00 0.00 39.54 3.27
3021 3327 6.015434 GGTTTTGGAGTATTGATGACAAACCT 60.015 38.462 0.00 0.00 39.54 3.50
3022 3328 7.175990 GGTTTTGGAGTATTGATGACAAACCTA 59.824 37.037 0.00 0.00 39.54 3.08
3023 3329 7.921786 TTTGGAGTATTGATGACAAACCTAG 57.078 36.000 0.00 0.00 39.54 3.02
3024 3330 6.620877 TGGAGTATTGATGACAAACCTAGT 57.379 37.500 0.00 0.00 39.54 2.57
3025 3331 7.016153 TGGAGTATTGATGACAAACCTAGTT 57.984 36.000 0.00 0.00 39.54 2.24
3026 3332 6.878923 TGGAGTATTGATGACAAACCTAGTTG 59.121 38.462 0.00 0.00 39.54 3.16
3027 3333 7.103641 GGAGTATTGATGACAAACCTAGTTGA 58.896 38.462 0.40 0.00 39.54 3.18
3028 3334 7.278868 GGAGTATTGATGACAAACCTAGTTGAG 59.721 40.741 0.40 0.00 39.54 3.02
3029 3335 7.106239 AGTATTGATGACAAACCTAGTTGAGG 58.894 38.462 0.40 0.00 43.49 3.86
3030 3336 5.256474 ATTGATGACAAACCTAGTTGAGGG 58.744 41.667 0.40 0.00 42.78 4.30
3031 3337 5.014123 ATTGATGACAAACCTAGTTGAGGGA 59.986 40.000 0.40 0.00 42.78 4.20
3032 3338 7.024686 ATTGATGACAAACCTAGTTGAGGGAC 61.025 42.308 0.40 0.00 42.78 4.46
3033 3339 9.117657 ATTGATGACAAACCTAGTTGAGGGACT 62.118 40.741 0.40 0.00 42.78 3.85
3041 3347 5.422214 CCTAGTTGAGGGACTAATGTGTT 57.578 43.478 0.00 0.00 41.55 3.32
3042 3348 5.805728 CCTAGTTGAGGGACTAATGTGTTT 58.194 41.667 0.00 0.00 41.55 2.83
3043 3349 6.942976 CCTAGTTGAGGGACTAATGTGTTTA 58.057 40.000 0.00 0.00 41.55 2.01
3044 3350 7.565680 CCTAGTTGAGGGACTAATGTGTTTAT 58.434 38.462 0.00 0.00 41.55 1.40
3045 3351 7.495934 CCTAGTTGAGGGACTAATGTGTTTATG 59.504 40.741 0.00 0.00 41.55 1.90
3046 3352 7.016153 AGTTGAGGGACTAATGTGTTTATGA 57.984 36.000 0.00 0.00 41.55 2.15
3047 3353 7.106239 AGTTGAGGGACTAATGTGTTTATGAG 58.894 38.462 0.00 0.00 41.55 2.90
3048 3354 6.867519 TGAGGGACTAATGTGTTTATGAGA 57.132 37.500 0.00 0.00 41.55 3.27
3049 3355 7.252612 TGAGGGACTAATGTGTTTATGAGAA 57.747 36.000 0.00 0.00 41.55 2.87
3050 3356 7.861629 TGAGGGACTAATGTGTTTATGAGAAT 58.138 34.615 0.00 0.00 41.55 2.40
3051 3357 8.328758 TGAGGGACTAATGTGTTTATGAGAATT 58.671 33.333 0.00 0.00 41.55 2.17
3052 3358 8.511604 AGGGACTAATGTGTTTATGAGAATTG 57.488 34.615 0.00 0.00 36.02 2.32
3053 3359 7.067494 AGGGACTAATGTGTTTATGAGAATTGC 59.933 37.037 0.00 0.00 36.02 3.56
3054 3360 7.148086 GGGACTAATGTGTTTATGAGAATTGCA 60.148 37.037 0.00 0.00 0.00 4.08
3055 3361 7.912250 GGACTAATGTGTTTATGAGAATTGCAG 59.088 37.037 0.00 0.00 0.00 4.41
3056 3362 7.765307 ACTAATGTGTTTATGAGAATTGCAGG 58.235 34.615 0.00 0.00 0.00 4.85
3057 3363 6.839124 AATGTGTTTATGAGAATTGCAGGA 57.161 33.333 0.00 0.00 0.00 3.86
3058 3364 7.414222 AATGTGTTTATGAGAATTGCAGGAT 57.586 32.000 0.00 0.00 0.00 3.24
3059 3365 8.523915 AATGTGTTTATGAGAATTGCAGGATA 57.476 30.769 0.00 0.00 0.00 2.59
3060 3366 7.936496 TGTGTTTATGAGAATTGCAGGATAA 57.064 32.000 0.00 0.00 0.00 1.75
3061 3367 7.761409 TGTGTTTATGAGAATTGCAGGATAAC 58.239 34.615 0.00 0.00 0.00 1.89
3062 3368 7.392953 TGTGTTTATGAGAATTGCAGGATAACA 59.607 33.333 0.00 0.00 0.00 2.41
3063 3369 7.698130 GTGTTTATGAGAATTGCAGGATAACAC 59.302 37.037 0.00 0.00 0.00 3.32
3064 3370 7.392953 TGTTTATGAGAATTGCAGGATAACACA 59.607 33.333 0.00 0.00 0.00 3.72
3065 3371 7.558161 TTATGAGAATTGCAGGATAACACAG 57.442 36.000 0.00 0.00 0.00 3.66
3066 3372 4.264253 TGAGAATTGCAGGATAACACAGG 58.736 43.478 0.00 0.00 0.00 4.00
3067 3373 4.263462 TGAGAATTGCAGGATAACACAGGT 60.263 41.667 0.00 0.00 0.00 4.00
3068 3374 5.045942 TGAGAATTGCAGGATAACACAGGTA 60.046 40.000 0.00 0.00 0.00 3.08
3069 3375 5.431765 AGAATTGCAGGATAACACAGGTAG 58.568 41.667 0.00 0.00 0.00 3.18
3070 3376 5.189736 AGAATTGCAGGATAACACAGGTAGA 59.810 40.000 0.00 0.00 0.00 2.59
3071 3377 4.901197 TTGCAGGATAACACAGGTAGAA 57.099 40.909 0.00 0.00 0.00 2.10
3072 3378 4.471904 TGCAGGATAACACAGGTAGAAG 57.528 45.455 0.00 0.00 0.00 2.85
3073 3379 3.838317 TGCAGGATAACACAGGTAGAAGT 59.162 43.478 0.00 0.00 0.00 3.01
3074 3380 4.081642 TGCAGGATAACACAGGTAGAAGTC 60.082 45.833 0.00 0.00 0.00 3.01
3075 3381 4.680975 GCAGGATAACACAGGTAGAAGTCC 60.681 50.000 0.00 0.00 0.00 3.85
3076 3382 4.031611 AGGATAACACAGGTAGAAGTCCC 58.968 47.826 0.00 0.00 0.00 4.46
3077 3383 4.031611 GGATAACACAGGTAGAAGTCCCT 58.968 47.826 0.00 0.00 0.00 4.20
3078 3384 4.099727 GGATAACACAGGTAGAAGTCCCTC 59.900 50.000 0.00 0.00 0.00 4.30
3079 3385 2.696526 ACACAGGTAGAAGTCCCTCA 57.303 50.000 0.00 0.00 0.00 3.86
3080 3386 3.191888 ACACAGGTAGAAGTCCCTCAT 57.808 47.619 0.00 0.00 0.00 2.90
3081 3387 3.521727 ACACAGGTAGAAGTCCCTCATT 58.478 45.455 0.00 0.00 0.00 2.57
3082 3388 3.261897 ACACAGGTAGAAGTCCCTCATTG 59.738 47.826 0.00 0.00 0.00 2.82
3083 3389 3.515502 CACAGGTAGAAGTCCCTCATTGA 59.484 47.826 0.00 0.00 0.00 2.57
3084 3390 4.163078 CACAGGTAGAAGTCCCTCATTGAT 59.837 45.833 0.00 0.00 0.00 2.57
3085 3391 4.785376 ACAGGTAGAAGTCCCTCATTGATT 59.215 41.667 0.00 0.00 0.00 2.57
3086 3392 5.251700 ACAGGTAGAAGTCCCTCATTGATTT 59.748 40.000 0.00 0.00 0.00 2.17
3087 3393 5.587844 CAGGTAGAAGTCCCTCATTGATTTG 59.412 44.000 0.00 0.00 0.00 2.32
3088 3394 4.884164 GGTAGAAGTCCCTCATTGATTTGG 59.116 45.833 0.00 0.00 0.00 3.28
3089 3395 4.664688 AGAAGTCCCTCATTGATTTGGT 57.335 40.909 0.00 0.00 0.00 3.67
3090 3396 5.003096 AGAAGTCCCTCATTGATTTGGTT 57.997 39.130 0.00 0.00 0.00 3.67
3091 3397 5.397360 AGAAGTCCCTCATTGATTTGGTTT 58.603 37.500 0.00 0.00 0.00 3.27
3092 3398 5.840693 AGAAGTCCCTCATTGATTTGGTTTT 59.159 36.000 0.00 0.00 0.00 2.43
3093 3399 5.728637 AGTCCCTCATTGATTTGGTTTTC 57.271 39.130 0.00 0.00 0.00 2.29
3094 3400 4.528206 AGTCCCTCATTGATTTGGTTTTCC 59.472 41.667 0.00 0.00 41.14 3.13
3095 3401 4.528206 GTCCCTCATTGATTTGGTTTTCCT 59.472 41.667 0.00 0.00 41.38 3.36
3096 3402 5.714806 GTCCCTCATTGATTTGGTTTTCCTA 59.285 40.000 0.00 0.00 41.38 2.94
3097 3403 5.714806 TCCCTCATTGATTTGGTTTTCCTAC 59.285 40.000 0.00 0.00 41.38 3.18
3098 3404 5.105351 CCCTCATTGATTTGGTTTTCCTACC 60.105 44.000 0.00 0.00 41.38 3.18
3099 3405 5.480073 CCTCATTGATTTGGTTTTCCTACCA 59.520 40.000 0.00 0.00 46.23 3.25
3107 3413 4.553330 TGGTTTTCCTACCAGAGATGAC 57.447 45.455 0.00 0.00 43.14 3.06
3108 3414 3.263425 TGGTTTTCCTACCAGAGATGACC 59.737 47.826 0.00 0.00 43.14 4.02
3109 3415 3.370633 GGTTTTCCTACCAGAGATGACCC 60.371 52.174 0.00 0.00 38.12 4.46
3110 3416 2.176247 TTCCTACCAGAGATGACCCC 57.824 55.000 0.00 0.00 0.00 4.95
3111 3417 1.319947 TCCTACCAGAGATGACCCCT 58.680 55.000 0.00 0.00 0.00 4.79
3112 3418 2.510330 TCCTACCAGAGATGACCCCTA 58.490 52.381 0.00 0.00 0.00 3.53
3113 3419 2.863238 TCCTACCAGAGATGACCCCTAA 59.137 50.000 0.00 0.00 0.00 2.69
3114 3420 3.273886 TCCTACCAGAGATGACCCCTAAA 59.726 47.826 0.00 0.00 0.00 1.85
3115 3421 4.037927 CCTACCAGAGATGACCCCTAAAA 58.962 47.826 0.00 0.00 0.00 1.52
3116 3422 4.473559 CCTACCAGAGATGACCCCTAAAAA 59.526 45.833 0.00 0.00 0.00 1.94
3117 3423 5.132816 CCTACCAGAGATGACCCCTAAAAAT 59.867 44.000 0.00 0.00 0.00 1.82
3118 3424 4.860022 ACCAGAGATGACCCCTAAAAATG 58.140 43.478 0.00 0.00 0.00 2.32
3119 3425 4.292306 ACCAGAGATGACCCCTAAAAATGT 59.708 41.667 0.00 0.00 0.00 2.71
3120 3426 5.491078 ACCAGAGATGACCCCTAAAAATGTA 59.509 40.000 0.00 0.00 0.00 2.29
3121 3427 6.160459 ACCAGAGATGACCCCTAAAAATGTAT 59.840 38.462 0.00 0.00 0.00 2.29
3122 3428 6.488006 CCAGAGATGACCCCTAAAAATGTATG 59.512 42.308 0.00 0.00 0.00 2.39
3123 3429 7.282585 CAGAGATGACCCCTAAAAATGTATGA 58.717 38.462 0.00 0.00 0.00 2.15
3124 3430 7.775093 CAGAGATGACCCCTAAAAATGTATGAA 59.225 37.037 0.00 0.00 0.00 2.57
3125 3431 7.995488 AGAGATGACCCCTAAAAATGTATGAAG 59.005 37.037 0.00 0.00 0.00 3.02
3126 3432 7.872138 AGATGACCCCTAAAAATGTATGAAGA 58.128 34.615 0.00 0.00 0.00 2.87
3127 3433 7.775561 AGATGACCCCTAAAAATGTATGAAGAC 59.224 37.037 0.00 0.00 0.00 3.01
3128 3434 6.785076 TGACCCCTAAAAATGTATGAAGACA 58.215 36.000 0.00 0.00 0.00 3.41
3129 3435 7.410174 TGACCCCTAAAAATGTATGAAGACAT 58.590 34.615 0.00 0.00 41.92 3.06
3131 3437 8.066612 ACCCCTAAAAATGTATGAAGACATTG 57.933 34.615 4.20 0.00 46.84 2.82
3132 3438 7.893302 ACCCCTAAAAATGTATGAAGACATTGA 59.107 33.333 4.20 0.00 46.84 2.57
3133 3439 8.748412 CCCCTAAAAATGTATGAAGACATTGAA 58.252 33.333 4.20 0.00 46.84 2.69
3134 3440 9.793252 CCCTAAAAATGTATGAAGACATTGAAG 57.207 33.333 4.20 3.26 46.84 3.02
3140 3446 9.903682 AAATGTATGAAGACATTGAAGTCAAAG 57.096 29.630 4.20 0.00 46.84 2.77
3141 3447 7.439157 TGTATGAAGACATTGAAGTCAAAGG 57.561 36.000 0.00 0.00 40.98 3.11
3142 3448 6.998074 TGTATGAAGACATTGAAGTCAAAGGT 59.002 34.615 0.00 0.02 40.98 3.50
3143 3449 5.756195 TGAAGACATTGAAGTCAAAGGTG 57.244 39.130 0.00 0.00 40.98 4.00
3144 3450 4.580167 TGAAGACATTGAAGTCAAAGGTGG 59.420 41.667 0.00 0.00 40.98 4.61
3145 3451 4.170468 AGACATTGAAGTCAAAGGTGGT 57.830 40.909 0.00 0.00 40.98 4.16
3146 3452 5.304686 AGACATTGAAGTCAAAGGTGGTA 57.695 39.130 0.00 0.00 40.98 3.25
3147 3453 5.880901 AGACATTGAAGTCAAAGGTGGTAT 58.119 37.500 0.00 0.00 40.98 2.73
3148 3454 7.016153 AGACATTGAAGTCAAAGGTGGTATA 57.984 36.000 0.00 0.00 40.98 1.47
3149 3455 7.633789 AGACATTGAAGTCAAAGGTGGTATAT 58.366 34.615 0.00 0.00 40.98 0.86
3150 3456 8.768397 AGACATTGAAGTCAAAGGTGGTATATA 58.232 33.333 0.00 0.00 40.98 0.86
3151 3457 9.391006 GACATTGAAGTCAAAGGTGGTATATAA 57.609 33.333 0.00 0.00 39.55 0.98
3152 3458 9.747898 ACATTGAAGTCAAAGGTGGTATATAAA 57.252 29.630 0.00 0.00 39.55 1.40
3182 3488 8.675705 TTCACATTGAAAACTATGACAAGAGA 57.324 30.769 0.00 0.00 32.71 3.10
3183 3489 8.675705 TCACATTGAAAACTATGACAAGAGAA 57.324 30.769 0.00 0.00 0.00 2.87
3184 3490 8.777413 TCACATTGAAAACTATGACAAGAGAAG 58.223 33.333 0.00 0.00 0.00 2.85
3185 3491 8.777413 CACATTGAAAACTATGACAAGAGAAGA 58.223 33.333 0.00 0.00 0.00 2.87
3186 3492 8.778358 ACATTGAAAACTATGACAAGAGAAGAC 58.222 33.333 0.00 0.00 0.00 3.01
3187 3493 8.777413 CATTGAAAACTATGACAAGAGAAGACA 58.223 33.333 0.00 0.00 0.00 3.41
3188 3494 7.715265 TGAAAACTATGACAAGAGAAGACAC 57.285 36.000 0.00 0.00 0.00 3.67
3189 3495 6.706270 TGAAAACTATGACAAGAGAAGACACC 59.294 38.462 0.00 0.00 0.00 4.16
3190 3496 5.808366 AACTATGACAAGAGAAGACACCA 57.192 39.130 0.00 0.00 0.00 4.17
3191 3497 5.140747 ACTATGACAAGAGAAGACACCAC 57.859 43.478 0.00 0.00 0.00 4.16
3192 3498 4.588951 ACTATGACAAGAGAAGACACCACA 59.411 41.667 0.00 0.00 0.00 4.17
3193 3499 4.630644 ATGACAAGAGAAGACACCACAT 57.369 40.909 0.00 0.00 0.00 3.21
3194 3500 3.732212 TGACAAGAGAAGACACCACATG 58.268 45.455 0.00 0.00 0.00 3.21
3195 3501 3.387699 TGACAAGAGAAGACACCACATGA 59.612 43.478 0.00 0.00 0.00 3.07
3196 3502 4.141733 TGACAAGAGAAGACACCACATGAA 60.142 41.667 0.00 0.00 0.00 2.57
3197 3503 4.384056 ACAAGAGAAGACACCACATGAAG 58.616 43.478 0.00 0.00 0.00 3.02
3198 3504 3.051081 AGAGAAGACACCACATGAAGC 57.949 47.619 0.00 0.00 0.00 3.86
3199 3505 2.079925 GAGAAGACACCACATGAAGCC 58.920 52.381 0.00 0.00 0.00 4.35
3200 3506 1.701847 AGAAGACACCACATGAAGCCT 59.298 47.619 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 172 3.430453 TCTTACAATGGCCAGGGAAAAG 58.570 45.455 13.05 14.00 0.00 2.27
425 429 3.312421 CGGTGCAGAACATATTTAGTGGG 59.688 47.826 0.00 0.00 0.00 4.61
631 727 7.652909 TGGTTTTCTGCAATTCACTTGAAATAG 59.347 33.333 0.00 0.00 37.61 1.73
668 764 3.243724 AGTCTTCTCTGCAACCCTAAGT 58.756 45.455 0.00 0.00 0.00 2.24
670 766 3.963428 GAGTCTTCTCTGCAACCCTAA 57.037 47.619 0.00 0.00 37.68 2.69
683 779 5.433005 GCACAAAAACGTAGAAGAGTCTTC 58.567 41.667 22.97 22.97 35.12 2.87
757 861 2.703007 AGTGCTTAAAATGCCCCAACAA 59.297 40.909 0.00 0.00 0.00 2.83
797 901 0.251564 ACGCCACATCCCCAAAATCA 60.252 50.000 0.00 0.00 0.00 2.57
924 1028 2.043450 AGAGTGAGGAGAGGGCGG 60.043 66.667 0.00 0.00 0.00 6.13
985 1089 4.738998 CATGGCACCGGGGAGCAA 62.739 66.667 8.67 0.28 33.44 3.91
1044 1148 1.340399 TGCCATCGCAGGAGGAGATT 61.340 55.000 0.00 0.00 41.12 2.40
1155 1268 1.808411 CTACGGGAGCAAGCAAAGAA 58.192 50.000 0.00 0.00 0.00 2.52
1204 1317 3.445805 TCACATCTGCGTCAGTACCATTA 59.554 43.478 6.72 0.00 32.61 1.90
1295 1408 3.686016 TCTTAGCACATCCAAGAAACCC 58.314 45.455 0.00 0.00 0.00 4.11
1445 1560 4.096382 ACAATGTGTGGTCAGAACAAGTTC 59.904 41.667 4.82 4.82 39.78 3.01
1534 1649 6.183360 ACACAGTGGCTAAAGCAAATTAAACT 60.183 34.615 5.31 0.00 44.36 2.66
1669 1784 4.137116 ACAAGTCACTAAGCACTCACAA 57.863 40.909 0.00 0.00 0.00 3.33
1878 1993 2.953648 GTCCTAGCTGACTTAGTCTCCC 59.046 54.545 13.86 2.14 33.15 4.30
1943 2058 7.604657 TCTCCTGTAGTTTCTTCTTCTCTTT 57.395 36.000 0.00 0.00 0.00 2.52
2000 2115 0.178938 TCCTGCTGGGCATCCAAAAA 60.179 50.000 10.07 0.00 43.51 1.94
2053 2168 6.645790 ATCTTCACTTCAAGATGTTGCTTT 57.354 33.333 0.00 0.00 40.88 3.51
2060 2175 5.674068 GCTCAGCAATCTTCACTTCAAGATG 60.674 44.000 0.00 0.00 41.45 2.90
2112 2227 6.978674 TCTCCTCTTTCTTTGACAACTCTA 57.021 37.500 0.00 0.00 0.00 2.43
2161 2279 7.870954 AGAGAATTCACATCAACGTACAAACTA 59.129 33.333 8.44 0.00 0.00 2.24
2170 2288 4.931601 TCCAAGAGAGAATTCACATCAACG 59.068 41.667 8.44 0.00 0.00 4.10
2172 2290 5.356190 GCATCCAAGAGAGAATTCACATCAA 59.644 40.000 8.44 0.00 0.00 2.57
2198 2316 2.293318 CCACACCCCTCTGCTGCTA 61.293 63.158 0.00 0.00 0.00 3.49
2479 2598 9.692325 AGCTTCAACTTTATCTTTTCCTCATAT 57.308 29.630 0.00 0.00 0.00 1.78
2481 2600 8.414629 AAGCTTCAACTTTATCTTTTCCTCAT 57.585 30.769 0.00 0.00 0.00 2.90
2513 2632 5.248020 CCTACTCATCTAAGATGGCCTTCAT 59.752 44.000 19.98 11.21 39.13 2.57
2628 2747 8.529424 AACACCATAGATCACAAATTCATCAT 57.471 30.769 0.00 0.00 0.00 2.45
2654 2773 4.833478 AGATTACAACACTGCTGGATCT 57.167 40.909 0.00 0.00 0.00 2.75
2719 2838 9.994432 GATCTCACAAAATACATAGACAAAAGG 57.006 33.333 0.00 0.00 0.00 3.11
2757 2898 7.451255 ACATTCATAAAGGTTCATCAAGGTTGA 59.549 33.333 0.00 0.00 42.14 3.18
2846 3102 4.760530 ATCGATGAAATGACCCTCAAGA 57.239 40.909 0.00 0.00 0.00 3.02
2939 3245 2.289945 ACAAGATGAGGCTCAAGGTGAC 60.290 50.000 22.84 8.84 0.00 3.67
2975 3281 1.794714 ACTAGGGGTGGCACTAGATG 58.205 55.000 18.45 8.10 39.16 2.90
2976 3282 2.119495 CAACTAGGGGTGGCACTAGAT 58.881 52.381 18.45 3.55 39.16 1.98
2978 3284 0.541863 CCAACTAGGGGTGGCACTAG 59.458 60.000 18.45 13.59 41.83 2.57
2979 3285 0.178885 ACCAACTAGGGGTGGCACTA 60.179 55.000 18.45 0.98 43.89 2.74
2980 3286 1.065997 AACCAACTAGGGGTGGCACT 61.066 55.000 18.45 0.00 43.89 4.40
2981 3287 0.178973 AAACCAACTAGGGGTGGCAC 60.179 55.000 9.70 9.70 43.89 5.01
2982 3288 0.558712 AAAACCAACTAGGGGTGGCA 59.441 50.000 8.90 0.00 43.89 4.92
2983 3289 0.966179 CAAAACCAACTAGGGGTGGC 59.034 55.000 8.90 0.00 43.89 5.01
2984 3290 1.146152 TCCAAAACCAACTAGGGGTGG 59.854 52.381 8.90 8.22 43.89 4.61
2985 3291 2.158519 ACTCCAAAACCAACTAGGGGTG 60.159 50.000 8.90 0.00 43.89 4.61
2987 3293 2.971901 ACTCCAAAACCAACTAGGGG 57.028 50.000 0.00 0.00 43.89 4.79
2988 3294 5.566469 TCAATACTCCAAAACCAACTAGGG 58.434 41.667 0.00 0.00 43.89 3.53
2989 3295 6.884295 TCATCAATACTCCAAAACCAACTAGG 59.116 38.462 0.00 0.00 45.67 3.02
2991 3297 7.227873 TGTCATCAATACTCCAAAACCAACTA 58.772 34.615 0.00 0.00 0.00 2.24
2992 3298 6.068010 TGTCATCAATACTCCAAAACCAACT 58.932 36.000 0.00 0.00 0.00 3.16
2993 3299 6.325919 TGTCATCAATACTCCAAAACCAAC 57.674 37.500 0.00 0.00 0.00 3.77
2997 3303 6.981722 AGGTTTGTCATCAATACTCCAAAAC 58.018 36.000 0.00 0.00 33.32 2.43
2998 3304 7.942341 ACTAGGTTTGTCATCAATACTCCAAAA 59.058 33.333 0.00 0.00 33.32 2.44
2999 3305 7.458397 ACTAGGTTTGTCATCAATACTCCAAA 58.542 34.615 0.00 0.00 33.32 3.28
3000 3306 7.016153 ACTAGGTTTGTCATCAATACTCCAA 57.984 36.000 0.00 0.00 33.32 3.53
3002 3308 7.103641 TCAACTAGGTTTGTCATCAATACTCC 58.896 38.462 0.00 0.00 33.32 3.85
3003 3309 7.278868 CCTCAACTAGGTTTGTCATCAATACTC 59.721 40.741 0.00 0.00 40.94 2.59
3004 3310 7.106239 CCTCAACTAGGTTTGTCATCAATACT 58.894 38.462 0.00 0.00 40.94 2.12
3005 3311 6.316390 CCCTCAACTAGGTTTGTCATCAATAC 59.684 42.308 0.00 0.00 44.90 1.89
3007 3313 5.014123 TCCCTCAACTAGGTTTGTCATCAAT 59.986 40.000 0.00 0.00 44.90 2.57
3008 3314 4.349636 TCCCTCAACTAGGTTTGTCATCAA 59.650 41.667 0.00 0.00 44.90 2.57
3010 3316 4.020128 AGTCCCTCAACTAGGTTTGTCATC 60.020 45.833 0.00 0.00 44.90 2.92
3011 3317 3.910627 AGTCCCTCAACTAGGTTTGTCAT 59.089 43.478 0.00 0.00 44.90 3.06
3012 3318 3.314693 AGTCCCTCAACTAGGTTTGTCA 58.685 45.455 0.00 0.00 44.90 3.58
3013 3319 5.479124 TTAGTCCCTCAACTAGGTTTGTC 57.521 43.478 0.00 0.00 44.90 3.18
3015 3321 5.643777 CACATTAGTCCCTCAACTAGGTTTG 59.356 44.000 0.00 0.00 44.90 2.93
3017 3323 4.844655 ACACATTAGTCCCTCAACTAGGTT 59.155 41.667 0.00 0.00 44.90 3.50
3018 3324 4.426704 ACACATTAGTCCCTCAACTAGGT 58.573 43.478 0.00 0.00 44.90 3.08
3019 3325 5.422214 AACACATTAGTCCCTCAACTAGG 57.578 43.478 0.00 0.00 46.09 3.02
3020 3326 8.258007 TCATAAACACATTAGTCCCTCAACTAG 58.742 37.037 0.00 0.00 33.46 2.57
3021 3327 8.141298 TCATAAACACATTAGTCCCTCAACTA 57.859 34.615 0.00 0.00 0.00 2.24
3022 3328 7.016153 TCATAAACACATTAGTCCCTCAACT 57.984 36.000 0.00 0.00 0.00 3.16
3023 3329 7.103641 TCTCATAAACACATTAGTCCCTCAAC 58.896 38.462 0.00 0.00 0.00 3.18
3024 3330 7.252612 TCTCATAAACACATTAGTCCCTCAA 57.747 36.000 0.00 0.00 0.00 3.02
3025 3331 6.867519 TCTCATAAACACATTAGTCCCTCA 57.132 37.500 0.00 0.00 0.00 3.86
3026 3332 8.616076 CAATTCTCATAAACACATTAGTCCCTC 58.384 37.037 0.00 0.00 0.00 4.30
3027 3333 7.067494 GCAATTCTCATAAACACATTAGTCCCT 59.933 37.037 0.00 0.00 0.00 4.20
3028 3334 7.148086 TGCAATTCTCATAAACACATTAGTCCC 60.148 37.037 0.00 0.00 0.00 4.46
3029 3335 7.761409 TGCAATTCTCATAAACACATTAGTCC 58.239 34.615 0.00 0.00 0.00 3.85
3030 3336 7.912250 CCTGCAATTCTCATAAACACATTAGTC 59.088 37.037 0.00 0.00 0.00 2.59
3031 3337 7.611467 TCCTGCAATTCTCATAAACACATTAGT 59.389 33.333 0.00 0.00 0.00 2.24
3032 3338 7.988737 TCCTGCAATTCTCATAAACACATTAG 58.011 34.615 0.00 0.00 0.00 1.73
3033 3339 7.936496 TCCTGCAATTCTCATAAACACATTA 57.064 32.000 0.00 0.00 0.00 1.90
3034 3340 6.839124 TCCTGCAATTCTCATAAACACATT 57.161 33.333 0.00 0.00 0.00 2.71
3035 3341 8.408601 GTTATCCTGCAATTCTCATAAACACAT 58.591 33.333 0.00 0.00 0.00 3.21
3036 3342 7.392953 TGTTATCCTGCAATTCTCATAAACACA 59.607 33.333 0.00 0.00 0.00 3.72
3037 3343 7.698130 GTGTTATCCTGCAATTCTCATAAACAC 59.302 37.037 0.00 0.00 0.00 3.32
3038 3344 7.392953 TGTGTTATCCTGCAATTCTCATAAACA 59.607 33.333 0.00 0.00 0.00 2.83
3039 3345 7.761409 TGTGTTATCCTGCAATTCTCATAAAC 58.239 34.615 0.00 0.00 0.00 2.01
3040 3346 7.067372 CCTGTGTTATCCTGCAATTCTCATAAA 59.933 37.037 0.00 0.00 0.00 1.40
3041 3347 6.543465 CCTGTGTTATCCTGCAATTCTCATAA 59.457 38.462 0.00 0.00 0.00 1.90
3042 3348 6.057533 CCTGTGTTATCCTGCAATTCTCATA 58.942 40.000 0.00 0.00 0.00 2.15
3043 3349 4.885907 CCTGTGTTATCCTGCAATTCTCAT 59.114 41.667 0.00 0.00 0.00 2.90
3044 3350 4.263462 ACCTGTGTTATCCTGCAATTCTCA 60.263 41.667 0.00 0.00 0.00 3.27
3045 3351 4.265073 ACCTGTGTTATCCTGCAATTCTC 58.735 43.478 0.00 0.00 0.00 2.87
3046 3352 4.307032 ACCTGTGTTATCCTGCAATTCT 57.693 40.909 0.00 0.00 0.00 2.40
3047 3353 5.428253 TCTACCTGTGTTATCCTGCAATTC 58.572 41.667 0.00 0.00 0.00 2.17
3048 3354 5.435686 TCTACCTGTGTTATCCTGCAATT 57.564 39.130 0.00 0.00 0.00 2.32
3049 3355 5.045578 ACTTCTACCTGTGTTATCCTGCAAT 60.046 40.000 0.00 0.00 0.00 3.56
3050 3356 4.286032 ACTTCTACCTGTGTTATCCTGCAA 59.714 41.667 0.00 0.00 0.00 4.08
3051 3357 3.838317 ACTTCTACCTGTGTTATCCTGCA 59.162 43.478 0.00 0.00 0.00 4.41
3052 3358 4.434520 GACTTCTACCTGTGTTATCCTGC 58.565 47.826 0.00 0.00 0.00 4.85
3053 3359 4.141914 GGGACTTCTACCTGTGTTATCCTG 60.142 50.000 0.00 0.00 0.00 3.86
3054 3360 4.031611 GGGACTTCTACCTGTGTTATCCT 58.968 47.826 0.00 0.00 0.00 3.24
3055 3361 4.031611 AGGGACTTCTACCTGTGTTATCC 58.968 47.826 0.00 0.00 35.30 2.59
3056 3362 4.710375 TGAGGGACTTCTACCTGTGTTATC 59.290 45.833 0.00 0.00 41.55 1.75
3057 3363 4.684724 TGAGGGACTTCTACCTGTGTTAT 58.315 43.478 0.00 0.00 41.55 1.89
3058 3364 4.122337 TGAGGGACTTCTACCTGTGTTA 57.878 45.455 0.00 0.00 41.55 2.41
3059 3365 2.972348 TGAGGGACTTCTACCTGTGTT 58.028 47.619 0.00 0.00 41.55 3.32
3060 3366 2.696526 TGAGGGACTTCTACCTGTGT 57.303 50.000 0.00 0.00 41.55 3.72
3061 3367 3.515502 TCAATGAGGGACTTCTACCTGTG 59.484 47.826 0.00 0.00 41.55 3.66
3062 3368 3.791320 TCAATGAGGGACTTCTACCTGT 58.209 45.455 0.00 0.00 41.55 4.00
3063 3369 5.365021 AATCAATGAGGGACTTCTACCTG 57.635 43.478 0.00 0.00 41.55 4.00
3064 3370 5.339530 CCAAATCAATGAGGGACTTCTACCT 60.340 44.000 0.00 0.00 41.55 3.08
3065 3371 4.884164 CCAAATCAATGAGGGACTTCTACC 59.116 45.833 0.00 0.00 41.55 3.18
3066 3372 5.501156 ACCAAATCAATGAGGGACTTCTAC 58.499 41.667 5.56 0.00 41.55 2.59
3067 3373 5.779241 ACCAAATCAATGAGGGACTTCTA 57.221 39.130 5.56 0.00 41.55 2.10
3068 3374 4.664688 ACCAAATCAATGAGGGACTTCT 57.335 40.909 5.56 0.00 41.55 2.85
3069 3375 5.728637 AAACCAAATCAATGAGGGACTTC 57.271 39.130 5.56 0.00 41.55 3.01
3070 3376 5.012046 GGAAAACCAAATCAATGAGGGACTT 59.988 40.000 5.56 0.00 41.55 3.01
3072 3378 4.528206 AGGAAAACCAAATCAATGAGGGAC 59.472 41.667 5.56 0.00 0.00 4.46
3073 3379 4.750941 AGGAAAACCAAATCAATGAGGGA 58.249 39.130 5.56 0.00 0.00 4.20
3074 3380 5.105351 GGTAGGAAAACCAAATCAATGAGGG 60.105 44.000 0.00 0.00 39.50 4.30
3075 3381 5.480073 TGGTAGGAAAACCAAATCAATGAGG 59.520 40.000 0.00 0.00 46.55 3.86
3076 3382 6.588719 TGGTAGGAAAACCAAATCAATGAG 57.411 37.500 0.00 0.00 46.55 2.90
3087 3393 3.370633 GGGTCATCTCTGGTAGGAAAACC 60.371 52.174 0.00 0.00 40.19 3.27
3088 3394 3.370633 GGGGTCATCTCTGGTAGGAAAAC 60.371 52.174 0.00 0.00 0.00 2.43
3089 3395 2.844348 GGGGTCATCTCTGGTAGGAAAA 59.156 50.000 0.00 0.00 0.00 2.29
3090 3396 2.045885 AGGGGTCATCTCTGGTAGGAAA 59.954 50.000 0.00 0.00 0.00 3.13
3091 3397 1.651770 AGGGGTCATCTCTGGTAGGAA 59.348 52.381 0.00 0.00 0.00 3.36
3092 3398 1.319947 AGGGGTCATCTCTGGTAGGA 58.680 55.000 0.00 0.00 0.00 2.94
3093 3399 3.330126 TTAGGGGTCATCTCTGGTAGG 57.670 52.381 0.00 0.00 0.00 3.18
3094 3400 5.693769 TTTTTAGGGGTCATCTCTGGTAG 57.306 43.478 0.00 0.00 0.00 3.18
3095 3401 5.491078 ACATTTTTAGGGGTCATCTCTGGTA 59.509 40.000 0.00 0.00 0.00 3.25
3096 3402 4.292306 ACATTTTTAGGGGTCATCTCTGGT 59.708 41.667 0.00 0.00 0.00 4.00
3097 3403 4.860022 ACATTTTTAGGGGTCATCTCTGG 58.140 43.478 0.00 0.00 0.00 3.86
3098 3404 7.282585 TCATACATTTTTAGGGGTCATCTCTG 58.717 38.462 0.00 0.00 0.00 3.35
3099 3405 7.451731 TCATACATTTTTAGGGGTCATCTCT 57.548 36.000 0.00 0.00 0.00 3.10
3100 3406 7.993183 TCTTCATACATTTTTAGGGGTCATCTC 59.007 37.037 0.00 0.00 0.00 2.75
3101 3407 7.775561 GTCTTCATACATTTTTAGGGGTCATCT 59.224 37.037 0.00 0.00 0.00 2.90
3102 3408 7.556275 TGTCTTCATACATTTTTAGGGGTCATC 59.444 37.037 0.00 0.00 0.00 2.92
3103 3409 7.410174 TGTCTTCATACATTTTTAGGGGTCAT 58.590 34.615 0.00 0.00 0.00 3.06
3104 3410 6.785076 TGTCTTCATACATTTTTAGGGGTCA 58.215 36.000 0.00 0.00 0.00 4.02
3105 3411 7.881775 ATGTCTTCATACATTTTTAGGGGTC 57.118 36.000 0.00 0.00 36.71 4.46
3106 3412 7.893302 TCAATGTCTTCATACATTTTTAGGGGT 59.107 33.333 0.00 0.00 45.54 4.95
3107 3413 8.292444 TCAATGTCTTCATACATTTTTAGGGG 57.708 34.615 0.00 0.00 45.54 4.79
3108 3414 9.793252 CTTCAATGTCTTCATACATTTTTAGGG 57.207 33.333 0.00 0.00 45.54 3.53
3114 3420 9.903682 CTTTGACTTCAATGTCTTCATACATTT 57.096 29.630 0.00 0.00 45.54 2.32
3116 3422 7.667219 ACCTTTGACTTCAATGTCTTCATACAT 59.333 33.333 0.00 0.00 41.87 2.29
3117 3423 6.998074 ACCTTTGACTTCAATGTCTTCATACA 59.002 34.615 0.00 0.00 37.79 2.29
3118 3424 7.301054 CACCTTTGACTTCAATGTCTTCATAC 58.699 38.462 0.00 0.00 37.79 2.39
3119 3425 6.430925 CCACCTTTGACTTCAATGTCTTCATA 59.569 38.462 0.00 0.00 37.79 2.15
3120 3426 5.242393 CCACCTTTGACTTCAATGTCTTCAT 59.758 40.000 0.00 0.00 37.79 2.57
3121 3427 4.580167 CCACCTTTGACTTCAATGTCTTCA 59.420 41.667 0.00 0.00 37.79 3.02
3122 3428 4.580580 ACCACCTTTGACTTCAATGTCTTC 59.419 41.667 0.00 0.00 37.79 2.87
3123 3429 4.536765 ACCACCTTTGACTTCAATGTCTT 58.463 39.130 0.00 0.00 37.79 3.01
3124 3430 4.170468 ACCACCTTTGACTTCAATGTCT 57.830 40.909 0.00 0.00 37.79 3.41
3125 3431 7.865706 ATATACCACCTTTGACTTCAATGTC 57.134 36.000 0.00 0.00 35.55 3.06
3126 3432 9.747898 TTTATATACCACCTTTGACTTCAATGT 57.252 29.630 0.00 0.00 35.55 2.71
3156 3462 9.288576 TCTCTTGTCATAGTTTTCAATGTGAAT 57.711 29.630 0.00 0.00 36.11 2.57
3157 3463 8.675705 TCTCTTGTCATAGTTTTCAATGTGAA 57.324 30.769 0.00 0.00 34.03 3.18
3158 3464 8.675705 TTCTCTTGTCATAGTTTTCAATGTGA 57.324 30.769 0.00 0.00 0.00 3.58
3159 3465 8.777413 TCTTCTCTTGTCATAGTTTTCAATGTG 58.223 33.333 0.00 0.00 0.00 3.21
3160 3466 8.778358 GTCTTCTCTTGTCATAGTTTTCAATGT 58.222 33.333 0.00 0.00 0.00 2.71
3161 3467 8.777413 TGTCTTCTCTTGTCATAGTTTTCAATG 58.223 33.333 0.00 0.00 0.00 2.82
3162 3468 8.778358 GTGTCTTCTCTTGTCATAGTTTTCAAT 58.222 33.333 0.00 0.00 0.00 2.57
3163 3469 7.226720 GGTGTCTTCTCTTGTCATAGTTTTCAA 59.773 37.037 0.00 0.00 0.00 2.69
3164 3470 6.706270 GGTGTCTTCTCTTGTCATAGTTTTCA 59.294 38.462 0.00 0.00 0.00 2.69
3165 3471 6.706270 TGGTGTCTTCTCTTGTCATAGTTTTC 59.294 38.462 0.00 0.00 0.00 2.29
3166 3472 6.483640 GTGGTGTCTTCTCTTGTCATAGTTTT 59.516 38.462 0.00 0.00 0.00 2.43
3167 3473 5.992217 GTGGTGTCTTCTCTTGTCATAGTTT 59.008 40.000 0.00 0.00 0.00 2.66
3168 3474 5.070446 TGTGGTGTCTTCTCTTGTCATAGTT 59.930 40.000 0.00 0.00 0.00 2.24
3169 3475 4.588951 TGTGGTGTCTTCTCTTGTCATAGT 59.411 41.667 0.00 0.00 0.00 2.12
3170 3476 5.139435 TGTGGTGTCTTCTCTTGTCATAG 57.861 43.478 0.00 0.00 0.00 2.23
3171 3477 5.245977 TCATGTGGTGTCTTCTCTTGTCATA 59.754 40.000 0.00 0.00 0.00 2.15
3172 3478 4.040829 TCATGTGGTGTCTTCTCTTGTCAT 59.959 41.667 0.00 0.00 0.00 3.06
3173 3479 3.387699 TCATGTGGTGTCTTCTCTTGTCA 59.612 43.478 0.00 0.00 0.00 3.58
3174 3480 3.995199 TCATGTGGTGTCTTCTCTTGTC 58.005 45.455 0.00 0.00 0.00 3.18
3175 3481 4.384056 CTTCATGTGGTGTCTTCTCTTGT 58.616 43.478 0.00 0.00 0.00 3.16
3176 3482 3.188048 GCTTCATGTGGTGTCTTCTCTTG 59.812 47.826 0.00 0.00 0.00 3.02
3177 3483 3.406764 GCTTCATGTGGTGTCTTCTCTT 58.593 45.455 0.00 0.00 0.00 2.85
3178 3484 2.289945 GGCTTCATGTGGTGTCTTCTCT 60.290 50.000 0.00 0.00 0.00 3.10
3179 3485 2.079925 GGCTTCATGTGGTGTCTTCTC 58.920 52.381 0.00 0.00 0.00 2.87
3180 3486 1.701847 AGGCTTCATGTGGTGTCTTCT 59.298 47.619 0.00 0.00 0.00 2.85
3181 3487 2.191128 AGGCTTCATGTGGTGTCTTC 57.809 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.