Multiple sequence alignment - TraesCS7A01G334100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G334100 chr7A 100.000 3887 0 0 1 3887 487629927 487633813 0.000000e+00 7179
1 TraesCS7A01G334100 chr7B 88.773 2788 186 45 761 3501 454238717 454241424 0.000000e+00 3297
2 TraesCS7A01G334100 chr7B 89.877 652 20 8 112 762 454237157 454237763 0.000000e+00 797
3 TraesCS7A01G334100 chr7B 90.845 142 6 3 1 141 454237014 454237149 2.390000e-42 183
4 TraesCS7A01G334100 chr7B 90.265 113 10 1 3775 3887 454241457 454241568 3.130000e-31 147
5 TraesCS7A01G334100 chr7D 90.206 2430 165 34 1229 3614 437424048 437426448 0.000000e+00 3101
6 TraesCS7A01G334100 chr7D 91.185 1021 41 20 113 1127 437423029 437424006 0.000000e+00 1341
7 TraesCS7A01G334100 chr7D 90.400 125 9 3 1 122 437417221 437417345 1.120000e-35 161
8 TraesCS7A01G334100 chr7D 90.265 113 9 2 3775 3887 437426447 437426557 3.130000e-31 147
9 TraesCS7A01G334100 chr1D 85.572 1206 123 27 1263 2450 37460375 37459203 0.000000e+00 1216
10 TraesCS7A01G334100 chr1B 85.986 1156 125 20 1292 2429 57380966 57379830 0.000000e+00 1203
11 TraesCS7A01G334100 chr1A 86.916 963 99 16 1504 2450 36763275 36762324 0.000000e+00 1055
12 TraesCS7A01G334100 chr1A 88.620 413 44 1 2455 2864 36762268 36761856 2.090000e-137 499
13 TraesCS7A01G334100 chr1A 74.403 586 73 33 621 1168 36764038 36763492 3.090000e-41 180
14 TraesCS7A01G334100 chr3A 90.741 162 9 3 3618 3777 600923234 600923077 1.090000e-50 211
15 TraesCS7A01G334100 chr5D 90.683 161 9 3 3618 3776 150835573 150835729 3.940000e-50 209
16 TraesCS7A01G334100 chr3D 89.697 165 11 3 3618 3780 528611682 528611522 5.090000e-49 206
17 TraesCS7A01G334100 chr3D 86.387 191 19 4 3591 3778 598889709 598889895 6.590000e-48 202
18 TraesCS7A01G334100 chr2A 90.123 162 10 3 3618 3777 249754615 249754458 5.090000e-49 206
19 TraesCS7A01G334100 chr6A 88.824 170 12 5 3612 3779 504487067 504487231 6.590000e-48 202
20 TraesCS7A01G334100 chr5B 89.222 167 10 6 3612 3776 472739671 472739831 6.590000e-48 202
21 TraesCS7A01G334100 chr5B 88.304 171 14 4 3611 3779 149590561 149590395 2.370000e-47 200
22 TraesCS7A01G334100 chr6D 89.506 162 11 3 3618 3777 351233591 351233434 2.370000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G334100 chr7A 487629927 487633813 3886 False 7179.000000 7179 100.000 1 3887 1 chr7A.!!$F1 3886
1 TraesCS7A01G334100 chr7B 454237014 454241568 4554 False 1106.000000 3297 89.940 1 3887 4 chr7B.!!$F1 3886
2 TraesCS7A01G334100 chr7D 437423029 437426557 3528 False 1529.666667 3101 90.552 113 3887 3 chr7D.!!$F2 3774
3 TraesCS7A01G334100 chr1D 37459203 37460375 1172 True 1216.000000 1216 85.572 1263 2450 1 chr1D.!!$R1 1187
4 TraesCS7A01G334100 chr1B 57379830 57380966 1136 True 1203.000000 1203 85.986 1292 2429 1 chr1B.!!$R1 1137
5 TraesCS7A01G334100 chr1A 36761856 36764038 2182 True 578.000000 1055 83.313 621 2864 3 chr1A.!!$R1 2243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
242 275 0.179026 CATGGTCATGAGGAGGGCTG 60.179 60.0 5.06 0.0 41.2 4.85 F
1185 2230 0.257039 ATGATGCACCTTCCCTCCAC 59.743 55.0 0.00 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1420 2472 0.098200 CAGCCACATGATCTTGTGCG 59.902 55.0 27.90 22.49 44.53 5.34 R
3037 4234 0.252742 ACATCTTCCCGGAACTCCCT 60.253 55.0 0.73 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 8.366400 GCTTGGAGTTGAGCCTATATGGTACA 62.366 46.154 0.00 0.00 36.21 2.90
77 78 1.693062 TGGTACAGTGCTACGGGAAAA 59.307 47.619 0.00 0.00 0.00 2.29
99 100 3.181440 ACAAAGCACTTCTTCTGGATCCA 60.181 43.478 15.27 15.27 32.88 3.41
108 141 1.139853 CTTCTGGATCCAGTGGGTAGC 59.860 57.143 35.34 0.00 43.96 3.58
110 143 0.467384 CTGGATCCAGTGGGTAGCTG 59.533 60.000 30.55 4.78 39.10 4.24
119 152 4.825679 GGGTAGCTGCCCTCCCCT 62.826 72.222 31.00 0.00 45.22 4.79
130 163 3.736224 CTCCCCTGCCCTGCACAT 61.736 66.667 0.00 0.00 33.79 3.21
141 174 4.339748 TGCCCTGCACATATTTAGTGAAA 58.660 39.130 0.00 0.00 39.30 2.69
173 206 2.028876 GTAAGCTGGGGTTGTTGTTGT 58.971 47.619 0.00 0.00 0.00 3.32
174 207 1.567357 AAGCTGGGGTTGTTGTTGTT 58.433 45.000 0.00 0.00 0.00 2.83
175 208 0.823460 AGCTGGGGTTGTTGTTGTTG 59.177 50.000 0.00 0.00 0.00 3.33
176 209 0.534873 GCTGGGGTTGTTGTTGTTGT 59.465 50.000 0.00 0.00 0.00 3.32
177 210 1.066502 GCTGGGGTTGTTGTTGTTGTT 60.067 47.619 0.00 0.00 0.00 2.83
178 211 2.615869 CTGGGGTTGTTGTTGTTGTTG 58.384 47.619 0.00 0.00 0.00 3.33
186 219 5.335661 GGTTGTTGTTGTTGTTGAGAAGAGT 60.336 40.000 0.00 0.00 0.00 3.24
215 248 5.725110 AGAGTTTGTGATTATGATGCGAC 57.275 39.130 0.00 0.00 0.00 5.19
241 274 1.992519 GCATGGTCATGAGGAGGGCT 61.993 60.000 14.43 0.00 41.20 5.19
242 275 0.179026 CATGGTCATGAGGAGGGCTG 60.179 60.000 5.06 0.00 41.20 4.85
243 276 1.351080 ATGGTCATGAGGAGGGCTGG 61.351 60.000 0.00 0.00 0.00 4.85
244 277 2.750657 GGTCATGAGGAGGGCTGGG 61.751 68.421 0.00 0.00 0.00 4.45
245 278 3.092511 TCATGAGGAGGGCTGGGC 61.093 66.667 0.00 0.00 0.00 5.36
282 316 3.378427 GGGGCAGAAATGATGAACACTAC 59.622 47.826 0.00 0.00 0.00 2.73
283 317 4.265073 GGGCAGAAATGATGAACACTACT 58.735 43.478 0.00 0.00 0.00 2.57
284 318 4.095483 GGGCAGAAATGATGAACACTACTG 59.905 45.833 0.00 0.00 0.00 2.74
323 357 2.432628 CCGAGTGTCCGGTTCAGC 60.433 66.667 0.00 0.00 44.23 4.26
324 358 2.338620 CGAGTGTCCGGTTCAGCA 59.661 61.111 0.00 0.00 0.00 4.41
325 359 1.079819 CGAGTGTCCGGTTCAGCAT 60.080 57.895 0.00 0.00 0.00 3.79
326 360 1.078759 CGAGTGTCCGGTTCAGCATC 61.079 60.000 0.00 1.03 0.00 3.91
327 361 0.741221 GAGTGTCCGGTTCAGCATCC 60.741 60.000 0.00 0.00 0.00 3.51
328 362 1.745489 GTGTCCGGTTCAGCATCCC 60.745 63.158 0.00 0.00 0.00 3.85
348 382 3.019564 CCAACCAAATCTCATCCTGACC 58.980 50.000 0.00 0.00 0.00 4.02
381 415 6.723298 TCTTTTGATTTGAGCCTTTTGGTA 57.277 33.333 0.00 0.00 42.99 3.25
451 485 3.059352 AGATGTGGTTAACTCAGTGCC 57.941 47.619 5.42 0.00 0.00 5.01
452 486 2.639839 AGATGTGGTTAACTCAGTGCCT 59.360 45.455 5.42 0.80 0.00 4.75
453 487 3.838317 AGATGTGGTTAACTCAGTGCCTA 59.162 43.478 5.42 0.00 0.00 3.93
454 488 3.678056 TGTGGTTAACTCAGTGCCTAG 57.322 47.619 5.42 0.00 0.00 3.02
455 489 2.289444 TGTGGTTAACTCAGTGCCTAGC 60.289 50.000 5.42 0.00 0.00 3.42
456 490 1.278127 TGGTTAACTCAGTGCCTAGCC 59.722 52.381 5.42 0.00 0.00 3.93
457 491 1.641577 GTTAACTCAGTGCCTAGCCG 58.358 55.000 0.00 0.00 0.00 5.52
458 492 0.535335 TTAACTCAGTGCCTAGCCGG 59.465 55.000 0.00 0.00 0.00 6.13
542 581 1.484240 ACCTGCTCCTTGCTCTACATC 59.516 52.381 0.00 0.00 43.37 3.06
549 588 5.213045 GCTCCTTGCTCTACATCGAAATGT 61.213 45.833 0.00 0.00 42.80 2.71
567 606 3.462483 TGTATTACCACCATAGCCGTG 57.538 47.619 0.00 0.00 0.00 4.94
872 1902 1.893919 GCCTTCTTCCTCCAGCTCGT 61.894 60.000 0.00 0.00 0.00 4.18
923 1953 1.153188 TGCACCACCATCGCCATAG 60.153 57.895 0.00 0.00 0.00 2.23
924 1954 1.153168 GCACCACCATCGCCATAGT 60.153 57.895 0.00 0.00 0.00 2.12
928 1958 2.037121 CACCACCATCGCCATAGTATCA 59.963 50.000 0.00 0.00 0.00 2.15
930 1960 3.055819 ACCACCATCGCCATAGTATCATC 60.056 47.826 0.00 0.00 0.00 2.92
931 1961 3.525537 CACCATCGCCATAGTATCATCC 58.474 50.000 0.00 0.00 0.00 3.51
932 1962 3.196469 CACCATCGCCATAGTATCATCCT 59.804 47.826 0.00 0.00 0.00 3.24
933 1963 3.196469 ACCATCGCCATAGTATCATCCTG 59.804 47.826 0.00 0.00 0.00 3.86
935 1965 4.402474 CCATCGCCATAGTATCATCCTGTA 59.598 45.833 0.00 0.00 0.00 2.74
937 1967 4.663334 TCGCCATAGTATCATCCTGTACT 58.337 43.478 0.00 0.00 35.47 2.73
953 1983 1.414550 GTACTCCCATCCAGCTTCCTC 59.585 57.143 0.00 0.00 0.00 3.71
999 2033 1.859302 AGAACAGAGGGCTAGTCAGG 58.141 55.000 0.00 0.00 0.00 3.86
1025 2059 3.897122 AGCGGTGGGGCTTTTCCA 61.897 61.111 0.00 0.00 41.39 3.53
1027 2061 2.676471 CGGTGGGGCTTTTCCAGG 60.676 66.667 0.00 0.00 34.56 4.45
1039 2073 4.722535 TCCAGGGAAGAGGCGCCT 62.723 66.667 33.48 33.48 0.00 5.52
1152 2191 5.324697 GTCAAATTATGCTCGTGTTTCTCC 58.675 41.667 0.00 0.00 0.00 3.71
1155 2200 5.353394 AATTATGCTCGTGTTTCTCCCTA 57.647 39.130 0.00 0.00 0.00 3.53
1164 2209 3.069729 CGTGTTTCTCCCTATTCCCCTAG 59.930 52.174 0.00 0.00 0.00 3.02
1174 2219 4.566488 CCCTATTCCCCTAGAATGATGCAC 60.566 50.000 0.00 0.00 45.11 4.57
1184 2229 1.002069 AATGATGCACCTTCCCTCCA 58.998 50.000 0.00 0.00 0.00 3.86
1185 2230 0.257039 ATGATGCACCTTCCCTCCAC 59.743 55.000 0.00 0.00 0.00 4.02
1208 2253 5.094134 CCTTCTTTAGAACTAACTCGACGG 58.906 45.833 0.00 0.00 0.00 4.79
1209 2254 5.335504 CCTTCTTTAGAACTAACTCGACGGT 60.336 44.000 0.00 0.00 0.00 4.83
1210 2255 5.288543 TCTTTAGAACTAACTCGACGGTC 57.711 43.478 0.00 0.00 0.00 4.79
1211 2256 4.756642 TCTTTAGAACTAACTCGACGGTCA 59.243 41.667 9.10 0.00 0.00 4.02
1212 2257 2.985406 AGAACTAACTCGACGGTCAC 57.015 50.000 9.10 0.00 0.00 3.67
1223 2268 3.055719 CGGTCACGCCCAAATGCT 61.056 61.111 0.00 0.00 0.00 3.79
1350 2401 4.513442 TGTATTCTGCAGCGGAGTATTTT 58.487 39.130 9.47 0.00 0.00 1.82
1398 2450 4.627467 GGAAAGCAGGCGTATGTCATATAG 59.373 45.833 0.00 0.00 0.00 1.31
1420 2472 0.179018 ATTGCTTCCTCCCGTATGCC 60.179 55.000 0.00 0.00 0.00 4.40
1488 2552 2.633967 TCATGCCTGGTTTGCTCATTTT 59.366 40.909 0.00 0.00 0.00 1.82
1489 2553 3.071312 TCATGCCTGGTTTGCTCATTTTT 59.929 39.130 0.00 0.00 0.00 1.94
1490 2554 4.282957 TCATGCCTGGTTTGCTCATTTTTA 59.717 37.500 0.00 0.00 0.00 1.52
1690 2788 4.003648 CAGGTTTTAGTTAGTGCCTCCTG 58.996 47.826 0.00 0.00 34.91 3.86
1693 2791 3.611766 TTTAGTTAGTGCCTCCTGAGC 57.388 47.619 0.00 0.00 0.00 4.26
1709 2808 2.606725 CTGAGCTCAGCAGTAATTTCCG 59.393 50.000 29.79 3.54 37.15 4.30
1719 2818 9.256477 CTCAGCAGTAATTTCCGTGTAATATTA 57.744 33.333 0.00 0.00 0.00 0.98
1721 2820 9.811655 CAGCAGTAATTTCCGTGTAATATTATG 57.188 33.333 0.00 0.00 0.00 1.90
1722 2821 8.504005 AGCAGTAATTTCCGTGTAATATTATGC 58.496 33.333 0.00 0.19 0.00 3.14
1723 2822 8.504005 GCAGTAATTTCCGTGTAATATTATGCT 58.496 33.333 0.00 0.00 0.00 3.79
1805 2908 3.869272 GGCCTGACGCAGCAATCG 61.869 66.667 0.00 0.00 40.31 3.34
1854 2957 4.223032 ACAAGAGGTACATCTTACCAGGTG 59.777 45.833 21.38 11.33 37.43 4.00
1875 2978 8.589338 CAGGTGAGTAAGTAGCCATAAGATATT 58.411 37.037 0.00 0.00 0.00 1.28
1914 3017 4.037565 TGACTCTGTTTTCTAGCTTGTCGA 59.962 41.667 0.00 0.00 0.00 4.20
1918 3021 2.792674 TGTTTTCTAGCTTGTCGACACG 59.207 45.455 19.90 18.33 0.00 4.49
1921 3024 2.046283 TCTAGCTTGTCGACACGTTG 57.954 50.000 19.90 9.98 0.00 4.10
1933 3036 2.159920 CGACACGTTGAAGATGCAAGAG 60.160 50.000 0.00 0.00 0.00 2.85
1957 3061 3.010420 GTGAATAAGAGTCAACCTGGGC 58.990 50.000 0.00 0.00 0.00 5.36
1970 3074 0.460987 CCTGGGCGAGACATCTTGAC 60.461 60.000 0.00 0.00 34.50 3.18
2007 3123 4.080186 TCAGCAGGAGATGATTCAATTCCA 60.080 41.667 17.26 0.09 34.77 3.53
2043 3159 4.437239 ACTTCAGCGAGATGAATAAGGTG 58.563 43.478 4.18 0.00 38.47 4.00
2055 3171 4.906618 TGAATAAGGTGAAGAACAGGACC 58.093 43.478 0.00 0.00 0.00 4.46
2070 3186 0.035152 GGACCACACAGATGCATCCA 60.035 55.000 23.06 0.00 0.00 3.41
2096 3212 4.226427 TCAGCTGTAAGGATCTGCAATT 57.774 40.909 14.67 0.00 33.36 2.32
2103 3219 6.238953 GCTGTAAGGATCTGCAATTCATGAAT 60.239 38.462 15.36 15.36 0.00 2.57
2104 3220 7.649533 TGTAAGGATCTGCAATTCATGAATT 57.350 32.000 24.83 24.83 41.33 2.17
2109 3225 6.210784 AGGATCTGCAATTCATGAATTATGGG 59.789 38.462 28.61 18.95 38.84 4.00
2112 3228 3.384146 TGCAATTCATGAATTATGGGCGT 59.616 39.130 28.61 6.29 38.84 5.68
2113 3229 3.737266 GCAATTCATGAATTATGGGCGTG 59.263 43.478 28.61 17.66 38.84 5.34
2114 3230 4.737352 GCAATTCATGAATTATGGGCGTGT 60.737 41.667 28.61 4.90 38.84 4.49
2115 3231 5.507149 GCAATTCATGAATTATGGGCGTGTA 60.507 40.000 28.61 0.00 38.84 2.90
2119 3242 7.433708 TTCATGAATTATGGGCGTGTATTAG 57.566 36.000 3.38 0.00 37.39 1.73
2123 3246 8.604035 CATGAATTATGGGCGTGTATTAGATAC 58.396 37.037 0.00 0.00 33.40 2.24
2148 3271 6.476706 CCTTGAACTTGATTTTGACCTGAAAC 59.523 38.462 0.00 0.00 0.00 2.78
2285 3416 1.002033 CTGAGTTGCCAAACTGACAGC 60.002 52.381 1.25 0.00 46.84 4.40
2411 3542 3.442625 GCAATACCCACCAAAAGAGGTAC 59.557 47.826 0.00 0.00 40.77 3.34
2533 3718 7.119997 GTGAAACAGATAAAAGATCGGATTCG 58.880 38.462 0.00 0.00 36.32 3.34
2560 3745 1.340248 TCTTCGACAACTCCACTCACC 59.660 52.381 0.00 0.00 0.00 4.02
2611 3796 4.040339 TCCTTGCTCAAGACATCAAGTGTA 59.960 41.667 10.94 0.00 42.36 2.90
2631 3816 4.847512 TGTAAGGGTCCAGGTAAATCAAGA 59.152 41.667 0.00 0.00 0.00 3.02
2671 3856 6.479884 AGATTACCAGGAATGATATGCCTTC 58.520 40.000 0.00 0.00 0.00 3.46
2684 3869 0.813610 TGCCTTCCAACACTGACACG 60.814 55.000 0.00 0.00 0.00 4.49
2697 3882 7.148490 CCAACACTGACACGATATTTCATGTTA 60.148 37.037 0.00 0.00 26.18 2.41
2703 3888 8.716646 TGACACGATATTTCATGTTACTGAAT 57.283 30.769 0.00 0.00 35.20 2.57
2713 3898 6.908870 TCATGTTACTGAATATGCAGACAC 57.091 37.500 18.17 12.79 39.20 3.67
2784 3969 3.244911 ACAACGATGATCCCAAGGAAAGT 60.245 43.478 0.00 0.00 34.34 2.66
2793 3978 1.528129 CCAAGGAAAGTGAGCAGACC 58.472 55.000 0.00 0.00 0.00 3.85
2874 4059 0.478507 AACCACTGCCCTGCTACTTT 59.521 50.000 0.00 0.00 0.00 2.66
2910 4095 1.073025 GACACCAGATGGCACCACA 59.927 57.895 0.00 0.00 35.73 4.17
2911 4096 0.537143 GACACCAGATGGCACCACAA 60.537 55.000 0.00 0.00 35.73 3.33
2930 4117 6.150140 ACCACAATTTCTGAATACTTCTGCTC 59.850 38.462 0.00 0.00 0.00 4.26
2932 4119 6.373774 CACAATTTCTGAATACTTCTGCTCCT 59.626 38.462 0.00 0.00 0.00 3.69
2933 4120 6.597280 ACAATTTCTGAATACTTCTGCTCCTC 59.403 38.462 0.00 0.00 0.00 3.71
2934 4121 5.745312 TTTCTGAATACTTCTGCTCCTCA 57.255 39.130 0.00 0.00 0.00 3.86
2935 4122 4.998671 TCTGAATACTTCTGCTCCTCAG 57.001 45.455 0.00 0.00 44.21 3.35
2937 4124 4.400884 TCTGAATACTTCTGCTCCTCAGTC 59.599 45.833 0.00 0.00 43.32 3.51
2939 4126 4.774726 TGAATACTTCTGCTCCTCAGTCTT 59.225 41.667 0.00 0.00 43.32 3.01
2940 4127 5.247110 TGAATACTTCTGCTCCTCAGTCTTT 59.753 40.000 0.00 0.00 43.32 2.52
2941 4128 3.676291 ACTTCTGCTCCTCAGTCTTTC 57.324 47.619 0.00 0.00 43.32 2.62
2942 4129 2.301583 ACTTCTGCTCCTCAGTCTTTCC 59.698 50.000 0.00 0.00 43.32 3.13
2943 4130 2.015456 TCTGCTCCTCAGTCTTTCCA 57.985 50.000 0.00 0.00 43.32 3.53
2944 4131 2.544721 TCTGCTCCTCAGTCTTTCCAT 58.455 47.619 0.00 0.00 43.32 3.41
2945 4132 2.235650 TCTGCTCCTCAGTCTTTCCATG 59.764 50.000 0.00 0.00 43.32 3.66
2946 4133 1.280133 TGCTCCTCAGTCTTTCCATGG 59.720 52.381 4.97 4.97 0.00 3.66
2947 4134 2.016096 GCTCCTCAGTCTTTCCATGGC 61.016 57.143 6.96 0.00 0.00 4.40
2948 4135 1.280133 CTCCTCAGTCTTTCCATGGCA 59.720 52.381 6.96 0.00 0.00 4.92
2949 4136 1.704628 TCCTCAGTCTTTCCATGGCAA 59.295 47.619 6.96 0.51 0.00 4.52
2950 4137 2.108075 TCCTCAGTCTTTCCATGGCAAA 59.892 45.455 6.96 7.94 0.00 3.68
2951 4138 2.490903 CCTCAGTCTTTCCATGGCAAAG 59.509 50.000 21.39 21.39 32.89 2.77
2952 4139 3.152341 CTCAGTCTTTCCATGGCAAAGT 58.848 45.455 24.06 12.03 33.32 2.66
2953 4140 2.886523 TCAGTCTTTCCATGGCAAAGTG 59.113 45.455 24.06 19.10 33.32 3.16
2954 4141 1.615392 AGTCTTTCCATGGCAAAGTGC 59.385 47.619 24.06 19.81 44.08 4.40
2955 4142 0.597568 TCTTTCCATGGCAAAGTGCG 59.402 50.000 24.06 5.59 46.21 5.34
2956 4143 0.597568 CTTTCCATGGCAAAGTGCGA 59.402 50.000 20.10 0.00 46.21 5.10
2957 4144 1.203052 CTTTCCATGGCAAAGTGCGAT 59.797 47.619 20.10 0.00 46.21 4.58
2958 4145 0.810648 TTCCATGGCAAAGTGCGATC 59.189 50.000 6.96 0.00 46.21 3.69
2959 4146 1.063006 CCATGGCAAAGTGCGATCG 59.937 57.895 11.69 11.69 46.21 3.69
2960 4147 1.063006 CATGGCAAAGTGCGATCGG 59.937 57.895 18.30 0.00 46.21 4.18
2978 4175 5.394663 CGATCGGCCCTTGATATAAAGATCT 60.395 44.000 7.38 0.00 32.32 2.75
2982 4179 6.013379 TCGGCCCTTGATATAAAGATCTTCAT 60.013 38.462 8.78 1.73 0.00 2.57
3006 4203 9.385902 CATTGTATATAGCAACACAATTACAGC 57.614 33.333 0.00 0.00 39.06 4.40
3011 4208 2.878406 AGCAACACAATTACAGCTCGTT 59.122 40.909 0.00 0.00 0.00 3.85
3047 4244 1.738099 CGCAAGACAGGGAGTTCCG 60.738 63.158 0.00 0.00 39.78 4.30
3073 4270 2.489528 TGTCCCGATTCCCCTTATCT 57.510 50.000 0.00 0.00 0.00 1.98
3098 4295 1.827969 TCCCCACTTTTTGTTGTGTGG 59.172 47.619 0.00 0.00 46.74 4.17
3111 4308 1.099689 TGTGTGGCATGCATCATGAG 58.900 50.000 21.36 0.00 43.81 2.90
3114 4311 2.684374 GTGTGGCATGCATCATGAGTTA 59.316 45.455 21.36 0.00 43.81 2.24
3118 4315 2.228059 GCATGCATCATGAGTTAGCCT 58.772 47.619 14.21 0.00 43.81 4.58
3124 4321 4.523943 TGCATCATGAGTTAGCCTTTTTGT 59.476 37.500 0.09 0.00 0.00 2.83
3134 4331 3.584733 AGCCTTTTTGTTCACTCTCCT 57.415 42.857 0.00 0.00 0.00 3.69
3243 4451 6.525121 TCTCAGTGTTCAAGTATTTTGTCG 57.475 37.500 0.00 0.00 0.00 4.35
3250 4458 6.410914 GTGTTCAAGTATTTTGTCGTCACTTG 59.589 38.462 6.46 6.46 44.69 3.16
3266 4474 1.276989 ACTTGGGTGTATGTACCACGG 59.723 52.381 0.00 0.00 42.69 4.94
3267 4475 1.551430 CTTGGGTGTATGTACCACGGA 59.449 52.381 0.00 0.00 42.69 4.69
3268 4476 0.896923 TGGGTGTATGTACCACGGAC 59.103 55.000 0.00 0.00 42.69 4.79
3269 4477 0.896923 GGGTGTATGTACCACGGACA 59.103 55.000 0.00 0.00 42.69 4.02
3288 4496 3.198068 ACAGAGTATAATGCTGCCAACG 58.802 45.455 0.00 0.00 33.03 4.10
3321 4529 6.605471 TCTCCTCTGCAGTAAATTACTTCA 57.395 37.500 14.67 4.13 36.76 3.02
3375 4584 1.952296 CTCTGGTTGCATAAGCCCATC 59.048 52.381 0.00 0.00 41.13 3.51
3386 4597 5.046448 TGCATAAGCCCATCAAATGTTCTTT 60.046 36.000 0.00 0.00 41.13 2.52
3394 4605 8.055181 AGCCCATCAAATGTTCTTTTCTATCTA 58.945 33.333 0.00 0.00 0.00 1.98
3421 4632 9.971922 CTATGTGAATCTATGATACACAAGACA 57.028 33.333 0.00 0.00 43.02 3.41
3426 4637 8.093927 TGAATCTATGATACACAAGACACACAA 58.906 33.333 0.00 0.00 0.00 3.33
3429 4640 4.143986 TGATACACAAGACACACAACCA 57.856 40.909 0.00 0.00 0.00 3.67
3430 4641 4.126437 TGATACACAAGACACACAACCAG 58.874 43.478 0.00 0.00 0.00 4.00
3431 4642 2.779755 ACACAAGACACACAACCAGA 57.220 45.000 0.00 0.00 0.00 3.86
3432 4643 2.632377 ACACAAGACACACAACCAGAG 58.368 47.619 0.00 0.00 0.00 3.35
3446 4657 3.386932 ACCAGAGAGAGAGAGAATGCT 57.613 47.619 0.00 0.00 0.00 3.79
3462 4673 6.036517 AGAGAATGCTAATCGAACAACATGAC 59.963 38.462 0.00 0.00 0.00 3.06
3463 4674 5.643348 AGAATGCTAATCGAACAACATGACA 59.357 36.000 0.00 0.00 0.00 3.58
3511 4723 6.238566 GCTAGAACATGCATGCAGAGAAATAA 60.239 38.462 26.69 6.40 0.00 1.40
3537 4750 7.829725 TGTCATTTTTCTTACCATCTGGAATG 58.170 34.615 2.55 1.25 38.94 2.67
3538 4751 7.093814 TGTCATTTTTCTTACCATCTGGAATGG 60.094 37.037 2.55 2.52 44.54 3.16
3550 4763 5.450965 CCATCTGGAATGGAAAACATGCTAC 60.451 44.000 0.00 0.00 41.64 3.58
3557 4770 6.313658 GGAATGGAAAACATGCTACAATTTCC 59.686 38.462 8.30 8.30 45.86 3.13
3563 4776 4.789012 ACATGCTACAATTTCCAGTTGG 57.211 40.909 0.00 0.00 0.00 3.77
3608 4822 2.037772 TGAAGAGGAAGTCTGGAGTTGC 59.962 50.000 2.17 2.17 34.84 4.17
3614 4828 3.259625 AGGAAGTCTGGAGTTGCTTCTAC 59.740 47.826 6.40 0.00 38.98 2.59
3615 4829 3.591023 GAAGTCTGGAGTTGCTTCTACC 58.409 50.000 0.00 0.00 35.69 3.18
3616 4830 2.609747 AGTCTGGAGTTGCTTCTACCA 58.390 47.619 0.00 0.00 0.00 3.25
3617 4831 2.300437 AGTCTGGAGTTGCTTCTACCAC 59.700 50.000 0.00 0.00 0.00 4.16
3619 4833 1.625818 CTGGAGTTGCTTCTACCACCT 59.374 52.381 0.00 0.00 0.00 4.00
3620 4834 1.623811 TGGAGTTGCTTCTACCACCTC 59.376 52.381 0.00 0.00 0.00 3.85
3621 4835 1.903183 GGAGTTGCTTCTACCACCTCT 59.097 52.381 0.00 0.00 0.00 3.69
3622 4836 2.354203 GGAGTTGCTTCTACCACCTCTG 60.354 54.545 0.00 0.00 0.00 3.35
3623 4837 2.300437 GAGTTGCTTCTACCACCTCTGT 59.700 50.000 0.00 0.00 0.00 3.41
3624 4838 2.706190 AGTTGCTTCTACCACCTCTGTT 59.294 45.455 0.00 0.00 0.00 3.16
3625 4839 3.067833 GTTGCTTCTACCACCTCTGTTC 58.932 50.000 0.00 0.00 0.00 3.18
3626 4840 1.623811 TGCTTCTACCACCTCTGTTCC 59.376 52.381 0.00 0.00 0.00 3.62
3627 4841 1.903183 GCTTCTACCACCTCTGTTCCT 59.097 52.381 0.00 0.00 0.00 3.36
3628 4842 3.097614 GCTTCTACCACCTCTGTTCCTA 58.902 50.000 0.00 0.00 0.00 2.94
3629 4843 3.514309 GCTTCTACCACCTCTGTTCCTAA 59.486 47.826 0.00 0.00 0.00 2.69
3630 4844 4.020485 GCTTCTACCACCTCTGTTCCTAAA 60.020 45.833 0.00 0.00 0.00 1.85
3631 4845 5.338463 GCTTCTACCACCTCTGTTCCTAAAT 60.338 44.000 0.00 0.00 0.00 1.40
3632 4846 5.677319 TCTACCACCTCTGTTCCTAAATG 57.323 43.478 0.00 0.00 0.00 2.32
3633 4847 5.091552 TCTACCACCTCTGTTCCTAAATGT 58.908 41.667 0.00 0.00 0.00 2.71
3634 4848 6.258354 TCTACCACCTCTGTTCCTAAATGTA 58.742 40.000 0.00 0.00 0.00 2.29
3635 4849 5.836024 ACCACCTCTGTTCCTAAATGTAA 57.164 39.130 0.00 0.00 0.00 2.41
3636 4850 6.195600 ACCACCTCTGTTCCTAAATGTAAA 57.804 37.500 0.00 0.00 0.00 2.01
3637 4851 6.238648 ACCACCTCTGTTCCTAAATGTAAAG 58.761 40.000 0.00 0.00 0.00 1.85
3638 4852 6.043938 ACCACCTCTGTTCCTAAATGTAAAGA 59.956 38.462 0.00 0.00 0.00 2.52
3639 4853 6.371825 CCACCTCTGTTCCTAAATGTAAAGAC 59.628 42.308 0.00 0.00 0.00 3.01
3640 4854 7.162082 CACCTCTGTTCCTAAATGTAAAGACT 58.838 38.462 0.00 0.00 0.00 3.24
3641 4855 7.661847 CACCTCTGTTCCTAAATGTAAAGACTT 59.338 37.037 0.00 0.00 0.00 3.01
3642 4856 8.218488 ACCTCTGTTCCTAAATGTAAAGACTTT 58.782 33.333 5.62 5.62 0.00 2.66
3643 4857 9.067986 CCTCTGTTCCTAAATGTAAAGACTTTT 57.932 33.333 5.61 0.00 36.95 2.27
3661 4875 9.720769 AAGACTTTTTAGAGATTTCAATACGGA 57.279 29.630 0.00 0.00 0.00 4.69
3662 4876 9.152595 AGACTTTTTAGAGATTTCAATACGGAC 57.847 33.333 0.00 0.00 0.00 4.79
3663 4877 9.152595 GACTTTTTAGAGATTTCAATACGGACT 57.847 33.333 0.00 0.00 0.00 3.85
3666 4880 9.932207 TTTTTAGAGATTTCAATACGGACTACA 57.068 29.630 0.00 0.00 0.00 2.74
3670 4884 7.361127 AGAGATTTCAATACGGACTACATACG 58.639 38.462 0.00 0.00 0.00 3.06
3671 4885 6.444633 AGATTTCAATACGGACTACATACGG 58.555 40.000 0.00 0.00 0.00 4.02
3672 4886 5.833406 TTTCAATACGGACTACATACGGA 57.167 39.130 0.00 0.00 0.00 4.69
3673 4887 5.428496 TTCAATACGGACTACATACGGAG 57.572 43.478 0.00 0.00 0.00 4.63
3674 4888 3.251729 TCAATACGGACTACATACGGAGC 59.748 47.826 0.00 0.00 0.00 4.70
3675 4889 2.330440 TACGGACTACATACGGAGCA 57.670 50.000 0.00 0.00 0.00 4.26
3676 4890 1.466856 ACGGACTACATACGGAGCAA 58.533 50.000 0.00 0.00 0.00 3.91
3677 4891 1.820519 ACGGACTACATACGGAGCAAA 59.179 47.619 0.00 0.00 0.00 3.68
3678 4892 2.231964 ACGGACTACATACGGAGCAAAA 59.768 45.455 0.00 0.00 0.00 2.44
3679 4893 3.118884 ACGGACTACATACGGAGCAAAAT 60.119 43.478 0.00 0.00 0.00 1.82
3680 4894 3.245284 CGGACTACATACGGAGCAAAATG 59.755 47.826 0.00 0.00 0.00 2.32
3681 4895 4.439057 GGACTACATACGGAGCAAAATGA 58.561 43.478 0.00 0.00 0.00 2.57
3682 4896 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
3683 4897 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3684 4898 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3685 4899 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3686 4900 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3687 4901 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3688 4902 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3689 4903 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3690 4904 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3691 4905 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3692 4906 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3693 4907 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3732 4946 5.117355 ACATCCGTATGTAGTCCGTATTG 57.883 43.478 0.00 0.00 44.66 1.90
3733 4947 4.823442 ACATCCGTATGTAGTCCGTATTGA 59.177 41.667 0.00 0.00 44.66 2.57
3734 4948 5.475909 ACATCCGTATGTAGTCCGTATTGAT 59.524 40.000 0.00 0.00 44.66 2.57
3735 4949 5.366829 TCCGTATGTAGTCCGTATTGATG 57.633 43.478 0.00 0.00 0.00 3.07
3736 4950 5.065235 TCCGTATGTAGTCCGTATTGATGA 58.935 41.667 0.00 0.00 0.00 2.92
3737 4951 5.532032 TCCGTATGTAGTCCGTATTGATGAA 59.468 40.000 0.00 0.00 0.00 2.57
3738 4952 6.039605 TCCGTATGTAGTCCGTATTGATGAAA 59.960 38.462 0.00 0.00 0.00 2.69
3739 4953 6.866770 CCGTATGTAGTCCGTATTGATGAAAT 59.133 38.462 0.00 0.00 0.00 2.17
3740 4954 8.024865 CCGTATGTAGTCCGTATTGATGAAATA 58.975 37.037 0.00 0.00 0.00 1.40
3741 4955 9.569167 CGTATGTAGTCCGTATTGATGAAATAT 57.431 33.333 0.00 0.00 33.32 1.28
3750 4964 9.929180 TCCGTATTGATGAAATATCTAAGAAGG 57.071 33.333 0.00 0.00 33.32 3.46
3751 4965 8.660373 CCGTATTGATGAAATATCTAAGAAGGC 58.340 37.037 0.00 0.00 33.32 4.35
3752 4966 9.429359 CGTATTGATGAAATATCTAAGAAGGCT 57.571 33.333 0.00 0.00 33.32 4.58
3770 4984 9.620259 AAGAAGGCTTATATTTAGAAACAGAGG 57.380 33.333 0.00 0.00 31.07 3.69
3771 4985 8.214364 AGAAGGCTTATATTTAGAAACAGAGGG 58.786 37.037 0.00 0.00 0.00 4.30
3772 4986 7.691993 AGGCTTATATTTAGAAACAGAGGGA 57.308 36.000 0.00 0.00 0.00 4.20
3773 4987 7.740805 AGGCTTATATTTAGAAACAGAGGGAG 58.259 38.462 0.00 0.00 0.00 4.30
3774 4988 7.348537 AGGCTTATATTTAGAAACAGAGGGAGT 59.651 37.037 0.00 0.00 0.00 3.85
3775 4989 8.648693 GGCTTATATTTAGAAACAGAGGGAGTA 58.351 37.037 0.00 0.00 0.00 2.59
3776 4990 9.699703 GCTTATATTTAGAAACAGAGGGAGTAG 57.300 37.037 0.00 0.00 0.00 2.57
3782 4996 8.488308 TTTAGAAACAGAGGGAGTAGTTTAGT 57.512 34.615 0.00 0.00 34.62 2.24
3783 4997 9.592196 TTTAGAAACAGAGGGAGTAGTTTAGTA 57.408 33.333 0.00 0.00 34.62 1.82
3784 4998 9.765295 TTAGAAACAGAGGGAGTAGTTTAGTAT 57.235 33.333 0.00 0.00 34.62 2.12
3829 5043 5.468592 TGTTTTTCGCGTAGACTTGGTATA 58.531 37.500 5.77 0.00 0.00 1.47
3834 5048 5.314923 TCGCGTAGACTTGGTATAACTTT 57.685 39.130 5.77 0.00 0.00 2.66
3839 5053 7.232300 GCGTAGACTTGGTATAACTTTTTGAC 58.768 38.462 0.00 0.00 0.00 3.18
3870 5084 7.118245 GGCTGAAATTCCTTGATTTGTTTTAGG 59.882 37.037 0.00 0.00 29.75 2.69
3881 5095 8.816640 TTGATTTGTTTTAGGCAAGAATTCTC 57.183 30.769 8.78 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 1.607148 GCTTTGTTTTCCCGTAGCACT 59.393 47.619 0.00 0.00 0.00 4.40
66 67 1.607148 AGTGCTTTGTTTTCCCGTAGC 59.393 47.619 0.00 0.00 0.00 3.58
77 78 3.181440 TGGATCCAGAAGAAGTGCTTTGT 60.181 43.478 11.44 0.00 36.83 2.83
113 146 1.713005 ATATGTGCAGGGCAGGGGAG 61.713 60.000 0.00 0.00 40.08 4.30
119 152 3.643199 TCACTAAATATGTGCAGGGCA 57.357 42.857 0.00 0.00 35.58 5.36
174 207 9.698309 CAAACTCTAAAGATACTCTTCTCAACA 57.302 33.333 0.00 0.00 35.27 3.33
175 208 9.699703 ACAAACTCTAAAGATACTCTTCTCAAC 57.300 33.333 0.00 0.00 35.27 3.18
176 209 9.698309 CACAAACTCTAAAGATACTCTTCTCAA 57.302 33.333 0.00 0.00 35.27 3.02
177 210 9.078990 TCACAAACTCTAAAGATACTCTTCTCA 57.921 33.333 0.00 0.00 35.27 3.27
212 245 2.821366 GACCATGCTGCTGGGTCG 60.821 66.667 21.37 0.00 41.43 4.79
215 248 1.077285 TCATGACCATGCTGCTGGG 60.077 57.895 18.12 13.70 40.85 4.45
223 256 0.179026 CAGCCCTCCTCATGACCATG 60.179 60.000 3.70 3.70 40.09 3.66
258 291 1.271871 TGTTCATCATTTCTGCCCCGT 60.272 47.619 0.00 0.00 0.00 5.28
259 292 1.133025 GTGTTCATCATTTCTGCCCCG 59.867 52.381 0.00 0.00 0.00 5.73
282 316 4.624015 TGCTTTCTTTTCTTTCCATGCAG 58.376 39.130 0.00 0.00 0.00 4.41
283 317 4.669206 TGCTTTCTTTTCTTTCCATGCA 57.331 36.364 0.00 0.00 0.00 3.96
284 318 4.212004 GGTTGCTTTCTTTTCTTTCCATGC 59.788 41.667 0.00 0.00 0.00 4.06
318 352 3.091545 GAGATTTGGTTGGGATGCTGAA 58.908 45.455 0.00 0.00 0.00 3.02
319 353 2.041485 TGAGATTTGGTTGGGATGCTGA 59.959 45.455 0.00 0.00 0.00 4.26
320 354 2.449464 TGAGATTTGGTTGGGATGCTG 58.551 47.619 0.00 0.00 0.00 4.41
321 355 2.905415 TGAGATTTGGTTGGGATGCT 57.095 45.000 0.00 0.00 0.00 3.79
322 356 2.363359 GGATGAGATTTGGTTGGGATGC 59.637 50.000 0.00 0.00 0.00 3.91
323 357 3.635373 CAGGATGAGATTTGGTTGGGATG 59.365 47.826 0.00 0.00 39.69 3.51
324 358 3.528905 TCAGGATGAGATTTGGTTGGGAT 59.471 43.478 0.00 0.00 42.56 3.85
325 359 2.918934 TCAGGATGAGATTTGGTTGGGA 59.081 45.455 0.00 0.00 42.56 4.37
326 360 3.370840 TCAGGATGAGATTTGGTTGGG 57.629 47.619 0.00 0.00 42.56 4.12
348 382 7.040548 AGGCTCAAATCAAAAGAAAAGAGAGAG 60.041 37.037 0.00 0.00 0.00 3.20
381 415 0.700564 AGTGTGCATCCATCCAGGTT 59.299 50.000 0.00 0.00 39.02 3.50
461 495 2.276853 GGTAGGGCTAGCCGGCTAG 61.277 68.421 45.39 45.39 46.41 3.42
462 496 2.203596 GGTAGGGCTAGCCGGCTA 60.204 66.667 33.24 33.24 38.46 3.93
465 499 3.603671 GTCGGTAGGGCTAGCCGG 61.604 72.222 27.24 13.43 44.97 6.13
466 500 2.073037 GAAGTCGGTAGGGCTAGCCG 62.073 65.000 27.24 15.34 46.12 5.52
467 501 1.041447 TGAAGTCGGTAGGGCTAGCC 61.041 60.000 26.55 26.55 0.00 3.93
468 502 0.102663 GTGAAGTCGGTAGGGCTAGC 59.897 60.000 6.04 6.04 0.00 3.42
542 581 4.151689 CGGCTATGGTGGTAATACATTTCG 59.848 45.833 0.00 0.00 0.00 3.46
567 606 3.825585 GCTAGTCTACTACATGTACCCCC 59.174 52.174 0.08 0.00 0.00 5.40
754 807 6.365839 CAACGGCAGAAACAGCATATAATAG 58.634 40.000 0.00 0.00 0.00 1.73
872 1902 2.097954 GCACTCATGGCGATGAATTCAA 59.902 45.455 13.09 0.00 38.17 2.69
923 1953 4.160329 TGGATGGGAGTACAGGATGATAC 58.840 47.826 0.00 0.00 39.69 2.24
924 1954 4.420206 CTGGATGGGAGTACAGGATGATA 58.580 47.826 0.00 0.00 39.69 2.15
928 1958 1.061812 AGCTGGATGGGAGTACAGGAT 60.062 52.381 0.00 0.00 0.00 3.24
930 1960 1.139853 GAAGCTGGATGGGAGTACAGG 59.860 57.143 0.00 0.00 0.00 4.00
931 1961 1.139853 GGAAGCTGGATGGGAGTACAG 59.860 57.143 0.00 0.00 0.00 2.74
932 1962 1.204146 GGAAGCTGGATGGGAGTACA 58.796 55.000 0.00 0.00 0.00 2.90
933 1963 1.414550 GAGGAAGCTGGATGGGAGTAC 59.585 57.143 0.00 0.00 0.00 2.73
935 1965 0.252881 TGAGGAAGCTGGATGGGAGT 60.253 55.000 0.00 0.00 0.00 3.85
937 1967 1.135094 GATGAGGAAGCTGGATGGGA 58.865 55.000 0.00 0.00 0.00 4.37
953 1983 3.428725 CCTCTCTCAGGTCTCGTTTGATG 60.429 52.174 0.00 0.00 37.53 3.07
980 2010 1.359474 TCCTGACTAGCCCTCTGTTCT 59.641 52.381 0.00 0.00 0.00 3.01
999 2033 2.438434 CCCACCGCTTCCACCATC 60.438 66.667 0.00 0.00 0.00 3.51
1019 2053 1.303317 GCGCCTCTTCCCTGGAAAA 60.303 57.895 0.00 0.00 33.34 2.29
1065 2099 2.765807 ATCTGCACCTCCTCCGGG 60.766 66.667 0.00 0.00 0.00 5.73
1129 2168 5.324697 GGAGAAACACGAGCATAATTTGAC 58.675 41.667 0.00 0.00 0.00 3.18
1152 2191 4.566488 GGTGCATCATTCTAGGGGAATAGG 60.566 50.000 0.00 0.00 42.20 2.57
1155 2200 3.059097 AGGTGCATCATTCTAGGGGAAT 58.941 45.455 0.00 0.00 44.66 3.01
1164 2209 1.064463 TGGAGGGAAGGTGCATCATTC 60.064 52.381 0.00 2.45 36.29 2.67
1174 2219 3.182152 TCTAAAGAAGGTGGAGGGAAGG 58.818 50.000 0.00 0.00 0.00 3.46
1184 2229 5.335504 CCGTCGAGTTAGTTCTAAAGAAGGT 60.336 44.000 0.00 0.00 34.27 3.50
1185 2230 5.094134 CCGTCGAGTTAGTTCTAAAGAAGG 58.906 45.833 0.00 3.73 34.27 3.46
1208 2253 2.715737 TTAAAGCATTTGGGCGTGAC 57.284 45.000 0.00 0.00 39.63 3.67
1209 2254 3.735237 TTTTAAAGCATTTGGGCGTGA 57.265 38.095 0.00 0.00 39.63 4.35
1210 2255 5.445806 GCTATTTTTAAAGCATTTGGGCGTG 60.446 40.000 0.00 0.00 39.63 5.34
1211 2256 4.629634 GCTATTTTTAAAGCATTTGGGCGT 59.370 37.500 0.00 0.00 39.63 5.68
1212 2257 4.629200 TGCTATTTTTAAAGCATTTGGGCG 59.371 37.500 0.00 0.00 43.56 6.13
1223 2268 6.763355 TGCCTGATTTGGTGCTATTTTTAAA 58.237 32.000 0.00 0.00 0.00 1.52
1242 2287 4.238761 CAATATCTGCTCCAAATGCCTG 57.761 45.455 0.00 0.00 0.00 4.85
1272 2317 5.879223 AGAGAGGTTGCTGTTGATATGAAAG 59.121 40.000 0.00 0.00 0.00 2.62
1350 2401 2.466846 TCCTGCATGTAGGCTAGTTCA 58.533 47.619 23.91 3.00 37.76 3.18
1398 2450 0.179018 ATACGGGAGGAAGCAATGGC 60.179 55.000 0.00 0.00 41.61 4.40
1420 2472 0.098200 CAGCCACATGATCTTGTGCG 59.902 55.000 27.90 22.49 44.53 5.34
1439 2500 1.023513 AGCGTGGAAGCTTGCTGATC 61.024 55.000 19.34 5.85 46.80 2.92
1468 2532 2.754946 AAATGAGCAAACCAGGCATG 57.245 45.000 0.00 0.00 0.00 4.06
1535 2633 1.997669 CCTTCACAGCGTACTCCTTC 58.002 55.000 0.00 0.00 0.00 3.46
1690 2788 2.349886 CACGGAAATTACTGCTGAGCTC 59.650 50.000 6.82 6.82 0.00 4.09
1693 2791 7.715265 ATATTACACGGAAATTACTGCTGAG 57.285 36.000 0.00 0.00 0.00 3.35
1719 2818 3.063997 CCGCTTCGTTAATCTGAAAGCAT 59.936 43.478 9.41 0.00 0.00 3.79
1721 2820 2.415512 ACCGCTTCGTTAATCTGAAAGC 59.584 45.455 0.00 0.00 0.00 3.51
1722 2821 4.394795 CAACCGCTTCGTTAATCTGAAAG 58.605 43.478 0.00 0.00 0.00 2.62
1723 2822 3.187637 CCAACCGCTTCGTTAATCTGAAA 59.812 43.478 0.00 0.00 0.00 2.69
1727 2826 2.467566 ACCAACCGCTTCGTTAATCT 57.532 45.000 0.00 0.00 0.00 2.40
1820 2923 5.160607 TGTACCTCTTGTGATACTTTGGG 57.839 43.478 0.00 0.00 0.00 4.12
1875 2978 2.687935 GAGTCACAGGAAAGGCACAAAA 59.312 45.455 0.00 0.00 0.00 2.44
1914 3017 3.111853 TCTCTTGCATCTTCAACGTGT 57.888 42.857 0.00 0.00 0.00 4.49
1918 3021 5.679734 TTCACTTCTCTTGCATCTTCAAC 57.320 39.130 0.00 0.00 0.00 3.18
1921 3024 7.548780 ACTCTTATTCACTTCTCTTGCATCTTC 59.451 37.037 0.00 0.00 0.00 2.87
1933 3036 4.938226 CCCAGGTTGACTCTTATTCACTTC 59.062 45.833 0.00 0.00 0.00 3.01
1957 3061 3.195825 ACTTAAGGGGTCAAGATGTCTCG 59.804 47.826 7.53 0.00 0.00 4.04
1970 3074 3.019564 CCTGCTGAAATCACTTAAGGGG 58.980 50.000 4.54 0.00 0.00 4.79
2007 3123 1.342174 CTGAAGTTGGGCACAGCATTT 59.658 47.619 5.33 0.00 0.00 2.32
2043 3159 2.910688 TCTGTGTGGTCCTGTTCTTC 57.089 50.000 0.00 0.00 0.00 2.87
2055 3171 0.393944 AGGCTGGATGCATCTGTGTG 60.394 55.000 25.28 12.21 45.15 3.82
2080 3196 7.649533 AATTCATGAATTGCAGATCCTTACA 57.350 32.000 28.57 0.00 39.36 2.41
2096 3212 6.764379 TCTAATACACGCCCATAATTCATGA 58.236 36.000 0.00 0.00 36.69 3.07
2103 3219 6.268158 TCAAGGTATCTAATACACGCCCATAA 59.732 38.462 0.03 0.00 37.48 1.90
2104 3220 5.776208 TCAAGGTATCTAATACACGCCCATA 59.224 40.000 0.03 0.00 37.48 2.74
2109 3225 6.755141 TCAAGTTCAAGGTATCTAATACACGC 59.245 38.462 0.03 0.00 37.48 5.34
2119 3242 7.174946 TCAGGTCAAAATCAAGTTCAAGGTATC 59.825 37.037 0.00 0.00 0.00 2.24
2123 3246 5.772825 TCAGGTCAAAATCAAGTTCAAGG 57.227 39.130 0.00 0.00 0.00 3.61
2235 3364 3.391506 AAGAAACCCAAGCTGATTTGC 57.608 42.857 0.00 0.00 0.00 3.68
2285 3416 1.133790 GGAGCTTGCTGCAAATGGTAG 59.866 52.381 16.74 4.45 45.94 3.18
2337 3468 1.086634 GTGCTGGAGAGGATGAACGC 61.087 60.000 0.00 0.00 0.00 4.84
2411 3542 9.436957 AGTTGTTGATTGGACTTATTACTACTG 57.563 33.333 0.00 0.00 0.00 2.74
2492 3677 5.240891 TGTTTCACAGAAACAAAATTGGCA 58.759 33.333 19.54 0.00 37.22 4.92
2536 3721 4.150804 GTGAGTGGAGTTGTCGAAGAAATC 59.849 45.833 0.00 0.00 39.69 2.17
2560 3745 1.342074 TTGAGAGTGACCCAGACCTG 58.658 55.000 0.00 0.00 0.00 4.00
2611 3796 4.325344 CCATCTTGATTTACCTGGACCCTT 60.325 45.833 0.00 0.00 0.00 3.95
2642 3827 6.569226 GCATATCATTCCTGGTAATCTTGTGC 60.569 42.308 0.00 0.24 0.00 4.57
2671 3856 5.562917 CATGAAATATCGTGTCAGTGTTGG 58.437 41.667 0.00 0.00 37.72 3.77
2697 3882 4.223700 TCTGAAGGTGTCTGCATATTCAGT 59.776 41.667 16.71 0.00 43.24 3.41
2703 3888 2.435805 GGGATCTGAAGGTGTCTGCATA 59.564 50.000 0.00 0.00 0.00 3.14
2766 3951 3.201290 CTCACTTTCCTTGGGATCATCG 58.799 50.000 0.00 0.00 0.00 3.84
2784 3969 0.541998 TCTTCTTCGGGGTCTGCTCA 60.542 55.000 0.00 0.00 0.00 4.26
2793 3978 2.464157 ACTTCTTGCTCTTCTTCGGG 57.536 50.000 0.00 0.00 0.00 5.14
2874 4059 3.759086 GTGTCAGGAGTCAGTAGTCATCA 59.241 47.826 0.00 0.00 0.00 3.07
2930 4117 2.205022 TTGCCATGGAAAGACTGAGG 57.795 50.000 18.40 0.00 0.00 3.86
2932 4119 2.886523 CACTTTGCCATGGAAAGACTGA 59.113 45.455 28.53 8.24 34.94 3.41
2933 4120 2.608752 GCACTTTGCCATGGAAAGACTG 60.609 50.000 28.53 21.66 37.42 3.51
2934 4121 1.615392 GCACTTTGCCATGGAAAGACT 59.385 47.619 28.53 14.31 37.42 3.24
2935 4122 1.666888 CGCACTTTGCCATGGAAAGAC 60.667 52.381 28.53 21.61 41.12 3.01
2937 4124 0.597568 TCGCACTTTGCCATGGAAAG 59.402 50.000 18.40 22.06 41.12 2.62
2939 4126 0.810648 GATCGCACTTTGCCATGGAA 59.189 50.000 18.40 0.00 41.12 3.53
2940 4127 1.368345 CGATCGCACTTTGCCATGGA 61.368 55.000 18.40 0.00 41.12 3.41
2941 4128 1.063006 CGATCGCACTTTGCCATGG 59.937 57.895 7.63 7.63 41.12 3.66
2942 4129 1.063006 CCGATCGCACTTTGCCATG 59.937 57.895 10.32 0.00 41.12 3.66
2943 4130 2.764314 GCCGATCGCACTTTGCCAT 61.764 57.895 10.32 0.00 41.12 4.40
2944 4131 3.430862 GCCGATCGCACTTTGCCA 61.431 61.111 10.32 0.00 41.12 4.92
2945 4132 4.179579 GGCCGATCGCACTTTGCC 62.180 66.667 10.32 12.36 41.12 4.52
2946 4133 4.179579 GGGCCGATCGCACTTTGC 62.180 66.667 10.32 6.40 38.16 3.68
2951 4138 0.320771 ATATCAAGGGCCGATCGCAC 60.321 55.000 10.32 6.64 43.45 5.34
2952 4139 1.262417 TATATCAAGGGCCGATCGCA 58.738 50.000 10.32 0.00 40.31 5.10
2953 4140 2.380084 TTATATCAAGGGCCGATCGC 57.620 50.000 10.32 5.23 0.00 4.58
2954 4141 4.188247 TCTTTATATCAAGGGCCGATCG 57.812 45.455 8.51 8.51 0.00 3.69
2955 4142 5.983540 AGATCTTTATATCAAGGGCCGATC 58.016 41.667 0.00 0.00 0.00 3.69
2956 4143 6.013379 TGAAGATCTTTATATCAAGGGCCGAT 60.013 38.462 9.87 0.00 0.00 4.18
2957 4144 5.306937 TGAAGATCTTTATATCAAGGGCCGA 59.693 40.000 9.87 0.00 0.00 5.54
2958 4145 5.551233 TGAAGATCTTTATATCAAGGGCCG 58.449 41.667 9.87 0.00 0.00 6.13
2959 4146 7.449704 ACAATGAAGATCTTTATATCAAGGGCC 59.550 37.037 12.69 0.00 0.00 5.80
2960 4147 8.401490 ACAATGAAGATCTTTATATCAAGGGC 57.599 34.615 12.69 0.00 0.00 5.19
2982 4179 8.731275 AGCTGTAATTGTGTTGCTATATACAA 57.269 30.769 0.00 0.00 37.43 2.41
2989 4186 3.659786 ACGAGCTGTAATTGTGTTGCTA 58.340 40.909 0.00 0.00 0.00 3.49
2990 4187 2.494059 ACGAGCTGTAATTGTGTTGCT 58.506 42.857 0.00 0.00 0.00 3.91
2991 4188 2.969443 ACGAGCTGTAATTGTGTTGC 57.031 45.000 0.00 0.00 0.00 4.17
2992 4189 6.370593 ACATTAACGAGCTGTAATTGTGTTG 58.629 36.000 0.00 0.00 0.00 3.33
2993 4190 6.554334 ACATTAACGAGCTGTAATTGTGTT 57.446 33.333 0.00 0.00 0.00 3.32
3027 4224 1.301716 GAACTCCCTGTCTTGCGCA 60.302 57.895 5.66 5.66 0.00 6.09
3037 4234 0.252742 ACATCTTCCCGGAACTCCCT 60.253 55.000 0.73 0.00 0.00 4.20
3098 4295 2.228059 AGGCTAACTCATGATGCATGC 58.772 47.619 11.82 11.82 41.18 4.06
3111 4308 4.822350 AGGAGAGTGAACAAAAAGGCTAAC 59.178 41.667 0.00 0.00 0.00 2.34
3114 4311 3.117888 TCAGGAGAGTGAACAAAAAGGCT 60.118 43.478 0.00 0.00 0.00 4.58
3118 4315 8.156820 TGAGATTATCAGGAGAGTGAACAAAAA 58.843 33.333 0.00 0.00 32.77 1.94
3134 4331 5.032327 ACTGCTGATTGCTGAGATTATCA 57.968 39.130 0.00 0.00 42.27 2.15
3162 4359 6.127897 GCTCACAGCTACATATTCCAAGTTTT 60.128 38.462 0.00 0.00 38.45 2.43
3181 4378 1.072806 ACTTCCTGATTGCTGCTCACA 59.927 47.619 0.00 0.00 0.00 3.58
3182 4379 1.818642 ACTTCCTGATTGCTGCTCAC 58.181 50.000 0.00 0.00 0.00 3.51
3223 4420 5.901884 GTGACGACAAAATACTTGAACACTG 59.098 40.000 0.00 0.00 0.00 3.66
3243 4451 3.332034 GTGGTACATACACCCAAGTGAC 58.668 50.000 0.00 0.00 44.62 3.67
3250 4458 0.896923 TGTCCGTGGTACATACACCC 59.103 55.000 0.00 0.00 44.52 4.61
3266 4474 3.246226 CGTTGGCAGCATTATACTCTGTC 59.754 47.826 1.39 0.00 33.39 3.51
3267 4475 3.198068 CGTTGGCAGCATTATACTCTGT 58.802 45.455 1.39 0.00 0.00 3.41
3268 4476 2.032549 GCGTTGGCAGCATTATACTCTG 60.033 50.000 1.39 0.00 39.62 3.35
3269 4477 2.213499 GCGTTGGCAGCATTATACTCT 58.787 47.619 1.39 0.00 39.62 3.24
3288 4496 3.591979 CAGAGGAGAGCTGCTATGC 57.408 57.895 7.77 7.77 33.78 3.14
3321 4529 1.540363 CGTGTGGCTACTGTTTCAGGT 60.540 52.381 0.64 0.00 35.51 4.00
3370 4579 9.401058 AGTAGATAGAAAAGAACATTTGATGGG 57.599 33.333 0.00 0.00 33.60 4.00
3394 4605 9.973450 GTCTTGTGTATCATAGATTCACATAGT 57.027 33.333 16.51 0.00 38.50 2.12
3421 4632 3.517296 TCTCTCTCTCTCTGGTTGTGT 57.483 47.619 0.00 0.00 0.00 3.72
3426 4637 3.386932 AGCATTCTCTCTCTCTCTGGT 57.613 47.619 0.00 0.00 0.00 4.00
3429 4640 5.620206 TCGATTAGCATTCTCTCTCTCTCT 58.380 41.667 0.00 0.00 0.00 3.10
3430 4641 5.940192 TCGATTAGCATTCTCTCTCTCTC 57.060 43.478 0.00 0.00 0.00 3.20
3431 4642 5.592282 TGTTCGATTAGCATTCTCTCTCTCT 59.408 40.000 0.00 0.00 0.00 3.10
3432 4643 5.826586 TGTTCGATTAGCATTCTCTCTCTC 58.173 41.667 0.00 0.00 0.00 3.20
3446 4657 4.006319 TGGCATGTCATGTTGTTCGATTA 58.994 39.130 14.26 0.00 0.00 1.75
3462 4673 3.446161 ACTGTCCAATCAGATTTGGCATG 59.554 43.478 2.13 0.83 44.85 4.06
3463 4674 3.705051 ACTGTCCAATCAGATTTGGCAT 58.295 40.909 2.13 0.00 44.85 4.40
3511 4723 8.472413 CATTCCAGATGGTAAGAAAAATGACAT 58.528 33.333 0.00 0.00 36.34 3.06
3527 4740 4.730949 AGCATGTTTTCCATTCCAGATG 57.269 40.909 0.00 0.00 0.00 2.90
3537 4750 5.783111 ACTGGAAATTGTAGCATGTTTTCC 58.217 37.500 5.92 5.92 43.56 3.13
3538 4751 6.146021 CCAACTGGAAATTGTAGCATGTTTTC 59.854 38.462 0.00 0.00 37.39 2.29
3550 4763 1.614903 TGAGCTGCCAACTGGAAATTG 59.385 47.619 0.00 0.00 37.39 2.32
3557 4770 2.949106 CGGTTGAGCTGCCAACTG 59.051 61.111 23.52 22.04 44.24 3.16
3563 4776 2.747460 TCATGCCGGTTGAGCTGC 60.747 61.111 1.90 0.00 0.00 5.25
3588 4802 2.301583 AGCAACTCCAGACTTCCTCTTC 59.698 50.000 0.00 0.00 0.00 2.87
3590 4804 2.022718 AGCAACTCCAGACTTCCTCT 57.977 50.000 0.00 0.00 0.00 3.69
3608 4822 5.740290 TTTAGGAACAGAGGTGGTAGAAG 57.260 43.478 0.00 0.00 0.00 2.85
3614 4828 6.371825 GTCTTTACATTTAGGAACAGAGGTGG 59.628 42.308 0.00 0.00 0.00 4.61
3615 4829 7.162082 AGTCTTTACATTTAGGAACAGAGGTG 58.838 38.462 0.00 0.00 0.00 4.00
3616 4830 7.317722 AGTCTTTACATTTAGGAACAGAGGT 57.682 36.000 0.00 0.00 0.00 3.85
3617 4831 8.622948 AAAGTCTTTACATTTAGGAACAGAGG 57.377 34.615 0.00 0.00 0.00 3.69
3635 4849 9.720769 TCCGTATTGAAATCTCTAAAAAGTCTT 57.279 29.630 0.00 0.00 0.00 3.01
3636 4850 9.152595 GTCCGTATTGAAATCTCTAAAAAGTCT 57.847 33.333 0.00 0.00 0.00 3.24
3637 4851 9.152595 AGTCCGTATTGAAATCTCTAAAAAGTC 57.847 33.333 0.00 0.00 0.00 3.01
3640 4854 9.932207 TGTAGTCCGTATTGAAATCTCTAAAAA 57.068 29.630 0.00 0.00 0.00 1.94
3644 4858 8.501580 CGTATGTAGTCCGTATTGAAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
3645 4859 7.361127 CGTATGTAGTCCGTATTGAAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
3646 4860 6.581542 CCGTATGTAGTCCGTATTGAAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
3647 4861 6.263842 TCCGTATGTAGTCCGTATTGAAATCT 59.736 38.462 0.00 0.00 0.00 2.40
3648 4862 6.441274 TCCGTATGTAGTCCGTATTGAAATC 58.559 40.000 0.00 0.00 0.00 2.17
3649 4863 6.395426 TCCGTATGTAGTCCGTATTGAAAT 57.605 37.500 0.00 0.00 0.00 2.17
3650 4864 5.734220 GCTCCGTATGTAGTCCGTATTGAAA 60.734 44.000 0.00 0.00 0.00 2.69
3651 4865 4.261322 GCTCCGTATGTAGTCCGTATTGAA 60.261 45.833 0.00 0.00 0.00 2.69
3652 4866 3.251729 GCTCCGTATGTAGTCCGTATTGA 59.748 47.826 0.00 0.00 0.00 2.57
3653 4867 3.004002 TGCTCCGTATGTAGTCCGTATTG 59.996 47.826 0.00 0.00 0.00 1.90
3654 4868 3.216800 TGCTCCGTATGTAGTCCGTATT 58.783 45.455 0.00 0.00 0.00 1.89
3655 4869 2.854963 TGCTCCGTATGTAGTCCGTAT 58.145 47.619 0.00 0.00 0.00 3.06
3656 4870 2.330440 TGCTCCGTATGTAGTCCGTA 57.670 50.000 0.00 0.00 0.00 4.02
3657 4871 1.466856 TTGCTCCGTATGTAGTCCGT 58.533 50.000 0.00 0.00 0.00 4.69
3658 4872 2.572191 TTTGCTCCGTATGTAGTCCG 57.428 50.000 0.00 0.00 0.00 4.79
3659 4873 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
3660 4874 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3661 4875 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3662 4876 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3663 4877 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3664 4878 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3665 4879 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3666 4880 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3667 4881 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3668 4882 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3669 4883 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3670 4884 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3671 4885 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3672 4886 8.621532 TTTAGTGTAGATTCACTCATTTTGCT 57.378 30.769 2.59 0.00 45.79 3.91
3673 4887 9.846248 ATTTTAGTGTAGATTCACTCATTTTGC 57.154 29.630 2.59 0.00 45.79 3.68
3700 4914 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
3701 4915 7.493645 CGGACTACATACGGATGTATATAGACA 59.506 40.741 20.64 2.07 45.42 3.41
3702 4916 7.493971 ACGGACTACATACGGATGTATATAGAC 59.506 40.741 20.64 10.95 45.42 2.59
3703 4917 7.559486 ACGGACTACATACGGATGTATATAGA 58.441 38.462 20.64 0.00 45.42 1.98
3704 4918 7.783090 ACGGACTACATACGGATGTATATAG 57.217 40.000 20.64 13.28 45.42 1.31
3705 4919 9.836864 AATACGGACTACATACGGATGTATATA 57.163 33.333 20.64 9.35 45.42 0.86
3706 4920 8.618677 CAATACGGACTACATACGGATGTATAT 58.381 37.037 20.64 12.15 45.42 0.86
3707 4921 7.823799 TCAATACGGACTACATACGGATGTATA 59.176 37.037 20.64 10.32 45.42 1.47
3708 4922 6.656270 TCAATACGGACTACATACGGATGTAT 59.344 38.462 20.64 11.04 45.42 2.29
3709 4923 5.997129 TCAATACGGACTACATACGGATGTA 59.003 40.000 19.32 19.32 44.77 2.29
3711 4925 5.366829 TCAATACGGACTACATACGGATG 57.633 43.478 5.94 5.94 39.16 3.51
3712 4926 5.708697 TCATCAATACGGACTACATACGGAT 59.291 40.000 0.00 0.00 31.40 4.18
3713 4927 5.065235 TCATCAATACGGACTACATACGGA 58.935 41.667 0.00 0.00 0.00 4.69
3714 4928 5.366829 TCATCAATACGGACTACATACGG 57.633 43.478 0.00 0.00 0.00 4.02
3715 4929 7.869016 ATTTCATCAATACGGACTACATACG 57.131 36.000 0.00 0.00 0.00 3.06
3724 4938 9.929180 CCTTCTTAGATATTTCATCAATACGGA 57.071 33.333 0.00 0.00 29.65 4.69
3725 4939 8.660373 GCCTTCTTAGATATTTCATCAATACGG 58.340 37.037 0.00 0.00 29.65 4.02
3726 4940 9.429359 AGCCTTCTTAGATATTTCATCAATACG 57.571 33.333 0.00 0.00 29.65 3.06
3744 4958 9.620259 CCTCTGTTTCTAAATATAAGCCTTCTT 57.380 33.333 0.00 0.00 36.35 2.52
3745 4959 8.214364 CCCTCTGTTTCTAAATATAAGCCTTCT 58.786 37.037 0.00 0.00 0.00 2.85
3746 4960 8.211629 TCCCTCTGTTTCTAAATATAAGCCTTC 58.788 37.037 0.00 0.00 0.00 3.46
3747 4961 8.102484 TCCCTCTGTTTCTAAATATAAGCCTT 57.898 34.615 0.00 0.00 0.00 4.35
3748 4962 7.348537 ACTCCCTCTGTTTCTAAATATAAGCCT 59.651 37.037 0.00 0.00 0.00 4.58
3749 4963 7.510407 ACTCCCTCTGTTTCTAAATATAAGCC 58.490 38.462 0.00 0.00 0.00 4.35
3750 4964 9.699703 CTACTCCCTCTGTTTCTAAATATAAGC 57.300 37.037 0.00 0.00 0.00 3.09
3756 4970 9.102453 ACTAAACTACTCCCTCTGTTTCTAAAT 57.898 33.333 0.00 0.00 34.88 1.40
3757 4971 8.488308 ACTAAACTACTCCCTCTGTTTCTAAA 57.512 34.615 0.00 0.00 34.88 1.85
3758 4972 9.765295 ATACTAAACTACTCCCTCTGTTTCTAA 57.235 33.333 0.00 0.00 34.88 2.10
3759 4973 9.765295 AATACTAAACTACTCCCTCTGTTTCTA 57.235 33.333 0.00 0.00 34.88 2.10
3760 4974 8.667592 AATACTAAACTACTCCCTCTGTTTCT 57.332 34.615 0.00 0.00 34.88 2.52
3761 4975 9.800433 GTAATACTAAACTACTCCCTCTGTTTC 57.200 37.037 0.00 0.00 34.88 2.78
3762 4976 9.317827 TGTAATACTAAACTACTCCCTCTGTTT 57.682 33.333 0.00 0.00 36.69 2.83
3763 4977 8.890410 TGTAATACTAAACTACTCCCTCTGTT 57.110 34.615 0.00 0.00 0.00 3.16
3764 4978 8.890410 TTGTAATACTAAACTACTCCCTCTGT 57.110 34.615 0.00 0.00 0.00 3.41
3765 4979 8.968969 ACTTGTAATACTAAACTACTCCCTCTG 58.031 37.037 0.00 0.00 0.00 3.35
3766 4980 9.544579 AACTTGTAATACTAAACTACTCCCTCT 57.455 33.333 0.00 0.00 0.00 3.69
3768 4982 9.939802 CAAACTTGTAATACTAAACTACTCCCT 57.060 33.333 0.00 0.00 0.00 4.20
3769 4983 8.663025 GCAAACTTGTAATACTAAACTACTCCC 58.337 37.037 0.00 0.00 0.00 4.30
3770 4984 9.211485 TGCAAACTTGTAATACTAAACTACTCC 57.789 33.333 0.00 0.00 0.00 3.85
3778 4992 9.685828 GTCCAAATTGCAAACTTGTAATACTAA 57.314 29.630 18.23 0.00 41.58 2.24
3779 4993 9.073475 AGTCCAAATTGCAAACTTGTAATACTA 57.927 29.630 18.23 0.00 41.58 1.82
3780 4994 7.951591 AGTCCAAATTGCAAACTTGTAATACT 58.048 30.769 18.23 13.82 41.58 2.12
3781 4995 8.487176 CAAGTCCAAATTGCAAACTTGTAATAC 58.513 33.333 23.66 15.02 41.58 1.89
3782 4996 8.586570 CAAGTCCAAATTGCAAACTTGTAATA 57.413 30.769 23.66 7.17 41.58 0.98
3783 4997 7.481275 CAAGTCCAAATTGCAAACTTGTAAT 57.519 32.000 23.66 8.07 43.75 1.89
3784 4998 6.900568 CAAGTCCAAATTGCAAACTTGTAA 57.099 33.333 23.66 10.79 41.05 2.41
3834 5048 5.612725 AGGAATTTCAGCCTTTTGTCAAA 57.387 34.783 0.00 0.00 0.00 2.69
3839 5053 6.484308 ACAAATCAAGGAATTTCAGCCTTTTG 59.516 34.615 0.00 0.00 42.41 2.44
3848 5062 7.961325 TGCCTAAAACAAATCAAGGAATTTC 57.039 32.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.