Multiple sequence alignment - TraesCS7A01G332600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G332600 chr7A 100.000 2273 0 0 1 2273 486097731 486095459 0.000000e+00 4198
1 TraesCS7A01G332600 chr7A 94.805 539 26 2 1 537 674979348 674979886 0.000000e+00 839
2 TraesCS7A01G332600 chr7A 100.000 101 0 0 2173 2273 486088789 486088689 1.070000e-43 187
3 TraesCS7A01G332600 chr2D 90.156 833 78 2 1343 2172 566983633 566982802 0.000000e+00 1081
4 TraesCS7A01G332600 chr2D 84.802 783 102 9 538 1308 650477882 650477105 0.000000e+00 771
5 TraesCS7A01G332600 chr2D 83.553 760 116 2 553 1304 20873326 20872568 0.000000e+00 702
6 TraesCS7A01G332600 chr1A 89.336 844 88 2 1329 2172 510278229 510277388 0.000000e+00 1059
7 TraesCS7A01G332600 chr1A 94.630 540 26 3 1 538 126481132 126480594 0.000000e+00 833
8 TraesCS7A01G332600 chr4D 89.205 843 85 5 1330 2172 17070118 17069282 0.000000e+00 1048
9 TraesCS7A01G332600 chr4B 89.298 841 82 7 1336 2172 81363188 81362352 0.000000e+00 1048
10 TraesCS7A01G332600 chr4B 85.881 772 100 2 538 1300 654049750 654048979 0.000000e+00 813
11 TraesCS7A01G332600 chr4B 98.131 107 1 1 2168 2273 287123038 287122932 3.860000e-43 185
12 TraesCS7A01G332600 chr7D 89.020 847 85 7 1329 2172 611665656 611664815 0.000000e+00 1042
13 TraesCS7A01G332600 chr3B 89.061 841 84 7 1336 2172 621476195 621475359 0.000000e+00 1037
14 TraesCS7A01G332600 chr3B 88.968 843 85 8 1332 2172 824304202 824305038 0.000000e+00 1035
15 TraesCS7A01G332600 chr3B 84.891 781 104 7 538 1309 636765431 636766206 0.000000e+00 776
16 TraesCS7A01G332600 chr3B 80.180 777 141 6 553 1320 384336065 384335293 9.110000e-159 569
17 TraesCS7A01G332600 chr6B 88.902 847 85 9 1329 2172 26218595 26217755 0.000000e+00 1035
18 TraesCS7A01G332600 chr6B 81.770 757 128 3 553 1300 177406145 177405390 1.920000e-175 625
19 TraesCS7A01G332600 chr6B 100.000 101 0 0 2173 2273 518862190 518862290 1.070000e-43 187
20 TraesCS7A01G332600 chr1B 89.021 838 86 5 1336 2172 589133300 589132468 0.000000e+00 1033
21 TraesCS7A01G332600 chr1B 84.762 735 104 1 563 1289 642147483 642148217 0.000000e+00 730
22 TraesCS7A01G332600 chr1B 99.029 103 1 0 2171 2273 320306187 320306085 3.860000e-43 185
23 TraesCS7A01G332600 chr3A 95.185 540 23 3 1 537 174189410 174189949 0.000000e+00 850
24 TraesCS7A01G332600 chr3A 94.620 539 28 1 1 538 517055084 517054546 0.000000e+00 833
25 TraesCS7A01G332600 chr4A 94.824 541 25 3 1 538 261934938 261935478 0.000000e+00 841
26 TraesCS7A01G332600 chr4A 94.796 538 27 1 1 537 47192756 47192219 0.000000e+00 837
27 TraesCS7A01G332600 chr4A 80.423 756 138 3 553 1299 169683161 169682407 3.280000e-158 568
28 TraesCS7A01G332600 chr5A 94.669 544 22 6 1 539 366686047 366686588 0.000000e+00 837
29 TraesCS7A01G332600 chr5A 94.620 539 27 2 1 537 403803932 403804470 0.000000e+00 833
30 TraesCS7A01G332600 chr5A 83.290 766 115 5 553 1308 415261004 415260242 0.000000e+00 693
31 TraesCS7A01G332600 chr5A 100.000 102 0 0 2172 2273 487362195 487362094 2.980000e-44 189
32 TraesCS7A01G332600 chr6A 94.640 541 26 3 1 538 96727374 96727914 0.000000e+00 835
33 TraesCS7A01G332600 chr5D 85.013 774 102 6 538 1300 240522818 240522048 0.000000e+00 774
34 TraesCS7A01G332600 chr3D 84.704 778 102 9 538 1304 570310345 570311116 0.000000e+00 761
35 TraesCS7A01G332600 chr3D 84.347 773 107 6 538 1299 406418106 406418875 0.000000e+00 745
36 TraesCS7A01G332600 chr1D 84.596 779 105 7 538 1305 431515976 431516750 0.000000e+00 760
37 TraesCS7A01G332600 chr2B 83.596 762 110 8 553 1304 109881069 109880313 0.000000e+00 701
38 TraesCS7A01G332600 chr2B 80.824 777 136 6 538 1304 296058968 296059741 4.180000e-167 597
39 TraesCS7A01G332600 chr2B 82.917 240 41 0 553 792 774546238 774545999 1.370000e-52 217
40 TraesCS7A01G332600 chr2B 97.248 109 2 1 2165 2273 561456390 561456497 1.390000e-42 183
41 TraesCS7A01G332600 chr5B 84.344 511 79 1 790 1300 450467956 450467447 1.210000e-137 499
42 TraesCS7A01G332600 chr7B 100.000 101 0 0 2173 2273 550878174 550878274 1.070000e-43 187
43 TraesCS7A01G332600 chr7B 100.000 101 0 0 2173 2273 550885122 550885222 1.070000e-43 187
44 TraesCS7A01G332600 chrUn 98.113 106 2 0 2168 2273 444076387 444076492 3.860000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G332600 chr7A 486095459 486097731 2272 True 4198 4198 100.000 1 2273 1 chr7A.!!$R2 2272
1 TraesCS7A01G332600 chr7A 674979348 674979886 538 False 839 839 94.805 1 537 1 chr7A.!!$F1 536
2 TraesCS7A01G332600 chr2D 566982802 566983633 831 True 1081 1081 90.156 1343 2172 1 chr2D.!!$R2 829
3 TraesCS7A01G332600 chr2D 650477105 650477882 777 True 771 771 84.802 538 1308 1 chr2D.!!$R3 770
4 TraesCS7A01G332600 chr2D 20872568 20873326 758 True 702 702 83.553 553 1304 1 chr2D.!!$R1 751
5 TraesCS7A01G332600 chr1A 510277388 510278229 841 True 1059 1059 89.336 1329 2172 1 chr1A.!!$R2 843
6 TraesCS7A01G332600 chr1A 126480594 126481132 538 True 833 833 94.630 1 538 1 chr1A.!!$R1 537
7 TraesCS7A01G332600 chr4D 17069282 17070118 836 True 1048 1048 89.205 1330 2172 1 chr4D.!!$R1 842
8 TraesCS7A01G332600 chr4B 81362352 81363188 836 True 1048 1048 89.298 1336 2172 1 chr4B.!!$R1 836
9 TraesCS7A01G332600 chr4B 654048979 654049750 771 True 813 813 85.881 538 1300 1 chr4B.!!$R3 762
10 TraesCS7A01G332600 chr7D 611664815 611665656 841 True 1042 1042 89.020 1329 2172 1 chr7D.!!$R1 843
11 TraesCS7A01G332600 chr3B 621475359 621476195 836 True 1037 1037 89.061 1336 2172 1 chr3B.!!$R2 836
12 TraesCS7A01G332600 chr3B 824304202 824305038 836 False 1035 1035 88.968 1332 2172 1 chr3B.!!$F2 840
13 TraesCS7A01G332600 chr3B 636765431 636766206 775 False 776 776 84.891 538 1309 1 chr3B.!!$F1 771
14 TraesCS7A01G332600 chr3B 384335293 384336065 772 True 569 569 80.180 553 1320 1 chr3B.!!$R1 767
15 TraesCS7A01G332600 chr6B 26217755 26218595 840 True 1035 1035 88.902 1329 2172 1 chr6B.!!$R1 843
16 TraesCS7A01G332600 chr6B 177405390 177406145 755 True 625 625 81.770 553 1300 1 chr6B.!!$R2 747
17 TraesCS7A01G332600 chr1B 589132468 589133300 832 True 1033 1033 89.021 1336 2172 1 chr1B.!!$R2 836
18 TraesCS7A01G332600 chr1B 642147483 642148217 734 False 730 730 84.762 563 1289 1 chr1B.!!$F1 726
19 TraesCS7A01G332600 chr3A 174189410 174189949 539 False 850 850 95.185 1 537 1 chr3A.!!$F1 536
20 TraesCS7A01G332600 chr3A 517054546 517055084 538 True 833 833 94.620 1 538 1 chr3A.!!$R1 537
21 TraesCS7A01G332600 chr4A 261934938 261935478 540 False 841 841 94.824 1 538 1 chr4A.!!$F1 537
22 TraesCS7A01G332600 chr4A 47192219 47192756 537 True 837 837 94.796 1 537 1 chr4A.!!$R1 536
23 TraesCS7A01G332600 chr4A 169682407 169683161 754 True 568 568 80.423 553 1299 1 chr4A.!!$R2 746
24 TraesCS7A01G332600 chr5A 366686047 366686588 541 False 837 837 94.669 1 539 1 chr5A.!!$F1 538
25 TraesCS7A01G332600 chr5A 403803932 403804470 538 False 833 833 94.620 1 537 1 chr5A.!!$F2 536
26 TraesCS7A01G332600 chr5A 415260242 415261004 762 True 693 693 83.290 553 1308 1 chr5A.!!$R1 755
27 TraesCS7A01G332600 chr6A 96727374 96727914 540 False 835 835 94.640 1 538 1 chr6A.!!$F1 537
28 TraesCS7A01G332600 chr5D 240522048 240522818 770 True 774 774 85.013 538 1300 1 chr5D.!!$R1 762
29 TraesCS7A01G332600 chr3D 570310345 570311116 771 False 761 761 84.704 538 1304 1 chr3D.!!$F2 766
30 TraesCS7A01G332600 chr3D 406418106 406418875 769 False 745 745 84.347 538 1299 1 chr3D.!!$F1 761
31 TraesCS7A01G332600 chr1D 431515976 431516750 774 False 760 760 84.596 538 1305 1 chr1D.!!$F1 767
32 TraesCS7A01G332600 chr2B 109880313 109881069 756 True 701 701 83.596 553 1304 1 chr2B.!!$R1 751
33 TraesCS7A01G332600 chr2B 296058968 296059741 773 False 597 597 80.824 538 1304 1 chr2B.!!$F1 766
34 TraesCS7A01G332600 chr5B 450467447 450467956 509 True 499 499 84.344 790 1300 1 chr5B.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 384 0.311165 AGTCACTCCGTGAAGTGTCG 59.689 55.0 8.97 0.0 44.49 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 1551 0.03213 AGTGTTGTCATCGTCGCTGT 59.968 50.0 0.0 0.0 0.0 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
375 381 3.194861 TGAAAAGTCACTCCGTGAAGTG 58.805 45.455 0.00 4.04 44.49 3.16
378 384 0.311165 AGTCACTCCGTGAAGTGTCG 59.689 55.000 8.97 0.00 44.49 4.35
381 387 2.432628 CTCCGTGAAGTGTCGGGC 60.433 66.667 3.85 0.00 45.79 6.13
423 429 5.504853 TCCTGCACATAAATAACACCATGA 58.495 37.500 0.00 0.00 0.00 3.07
451 457 1.871080 CTGAAAACAGCGTCAGTCCT 58.129 50.000 0.00 0.00 37.16 3.85
546 552 4.023980 TGGAGACGTATCAAGATTCCAGT 58.976 43.478 12.92 0.00 0.00 4.00
560 566 1.189524 TCCAGTTACACCTCCCACGG 61.190 60.000 0.00 0.00 0.00 4.94
561 567 1.375523 CAGTTACACCTCCCACGGC 60.376 63.158 0.00 0.00 0.00 5.68
594 600 0.884704 GTGGGCACGTGACATCTTGT 60.885 55.000 25.47 0.00 0.00 3.16
781 788 1.006805 GGAGATCGATGGCTGGTCG 60.007 63.158 0.54 2.00 40.30 4.79
795 810 1.525077 GGTCGGTGTTGGTGAAGCA 60.525 57.895 0.00 0.00 0.00 3.91
807 822 0.465460 GTGAAGCAGGTTGGGTCACA 60.465 55.000 0.00 0.00 0.00 3.58
852 867 3.048600 TGTTGAGGATATGAAGGGAGGG 58.951 50.000 0.00 0.00 0.00 4.30
857 872 1.416013 GGATATGAAGGGAGGGGTGGA 60.416 57.143 0.00 0.00 0.00 4.02
881 896 2.347490 GGCCAGGTCACACATCGT 59.653 61.111 0.00 0.00 0.00 3.73
891 906 1.414550 TCACACATCGTGTTCCTTGGA 59.585 47.619 0.00 0.00 45.08 3.53
910 925 0.537371 AGCCTGGTGCAAACCACTAC 60.537 55.000 0.00 0.00 44.08 2.73
911 926 0.821711 GCCTGGTGCAAACCACTACA 60.822 55.000 0.00 0.00 44.08 2.74
939 954 2.582436 GACCCCTTCATCGCGGAA 59.418 61.111 6.13 1.29 0.00 4.30
954 969 1.930371 GCGGAATTGCTTGCTTTTCGT 60.930 47.619 0.00 0.00 0.00 3.85
957 972 3.578688 GGAATTGCTTGCTTTTCGTGAT 58.421 40.909 0.00 0.00 0.00 3.06
984 1000 1.603456 TCTTTGCGCAACTTCATGGA 58.397 45.000 24.99 4.29 0.00 3.41
1042 1058 6.412362 AGCTAGTTGATCTATGGAAATCGT 57.588 37.500 0.00 0.00 0.00 3.73
1056 1072 0.667993 AATCGTGCAACAACACCAGG 59.332 50.000 0.00 0.00 37.25 4.45
1125 1141 4.822350 ACCTTTGCTTCTCTTTCTGTTACC 59.178 41.667 0.00 0.00 0.00 2.85
1140 1156 3.711704 CTGTTACCCATGTCAGTAGGGAT 59.288 47.826 13.23 2.81 45.80 3.85
1148 1164 1.312815 GTCAGTAGGGATGCCAATGC 58.687 55.000 5.86 0.00 38.26 3.56
1264 1280 4.377021 GGCGGATTGTAACACTATGATCA 58.623 43.478 0.00 0.00 0.00 2.92
1290 1306 9.698617 ATACGTTAATAAAGTTCTTGAATTCGC 57.301 29.630 0.00 0.00 0.00 4.70
1345 1361 5.408604 GCAAGTAAGATCGTTTTTCCTCTCA 59.591 40.000 0.00 0.00 0.00 3.27
1369 1385 3.400054 GGCGGCTGGAACCCTAGT 61.400 66.667 0.00 0.00 0.00 2.57
1374 1390 2.359967 GCTGGAACCCTAGTCGCCT 61.360 63.158 0.00 0.00 0.00 5.52
1376 1392 2.005960 CTGGAACCCTAGTCGCCTCG 62.006 65.000 0.00 0.00 0.00 4.63
1397 1416 1.038130 GGAGGCCAGTCTTCTAGCGA 61.038 60.000 5.01 0.00 0.00 4.93
1402 1421 0.247735 CCAGTCTTCTAGCGACGTCG 60.248 60.000 32.57 32.57 43.27 5.12
1406 1425 0.390866 TCTTCTAGCGACGTCGTCCT 60.391 55.000 35.48 26.99 42.22 3.85
1436 1455 3.432588 CGCCGACGACCTCAGTCT 61.433 66.667 0.00 0.00 43.93 3.24
1447 1466 0.244994 CCTCAGTCTTCGGTGGTGAG 59.755 60.000 0.00 0.00 35.42 3.51
1531 1551 1.071542 TGTTCATCACCTTGGCTTCGA 59.928 47.619 0.00 0.00 0.00 3.71
1533 1556 0.684535 TCATCACCTTGGCTTCGACA 59.315 50.000 0.00 0.00 0.00 4.35
1688 1711 4.126908 CCTGTGTCCTCAGGCTCT 57.873 61.111 2.71 0.00 46.53 4.09
1717 1740 2.594962 CGACGTTTGCTCCAGCGTT 61.595 57.895 0.00 0.00 45.83 4.84
1761 1784 1.123077 AGGAGCGGATGCAGATTGTA 58.877 50.000 0.00 0.00 46.23 2.41
1805 1828 4.475527 GGAACGTCTGCTGGGTTT 57.524 55.556 0.00 0.00 0.00 3.27
1855 1878 0.522915 CCTTCGGCGTCTTAGTCGTC 60.523 60.000 6.85 0.00 40.52 4.20
1926 1949 3.742369 GGTCTGATTCGTTCAACGGTAAA 59.258 43.478 10.69 0.00 42.81 2.01
2027 2050 4.253685 GAGGTGATCCGTCATTCTTTTCA 58.746 43.478 0.00 0.00 36.60 2.69
2053 2076 4.108299 TGCTATGGTGGTGCCGGG 62.108 66.667 2.18 0.00 41.21 5.73
2068 2091 3.249189 GGGGGCAGGTGACAGACA 61.249 66.667 0.00 0.00 0.00 3.41
2104 2127 8.757877 AGCTCAGAGATGTTCTACTATCTTTTT 58.242 33.333 0.00 0.00 33.97 1.94
2128 2151 5.680619 AGTTTTGTCATGTCTGTCCTTACA 58.319 37.500 0.00 0.00 0.00 2.41
2178 2201 1.898902 TGGGACACGTATTTGTTGGG 58.101 50.000 0.00 0.00 0.00 4.12
2179 2202 1.170442 GGGACACGTATTTGTTGGGG 58.830 55.000 0.00 0.00 0.00 4.96
2180 2203 1.271488 GGGACACGTATTTGTTGGGGA 60.271 52.381 0.00 0.00 0.00 4.81
2181 2204 2.506444 GGACACGTATTTGTTGGGGAA 58.494 47.619 0.00 0.00 0.00 3.97
2182 2205 2.227149 GGACACGTATTTGTTGGGGAAC 59.773 50.000 0.00 0.00 0.00 3.62
2183 2206 1.874872 ACACGTATTTGTTGGGGAACG 59.125 47.619 0.00 0.00 36.48 3.95
2184 2207 1.874872 CACGTATTTGTTGGGGAACGT 59.125 47.619 0.00 0.00 43.62 3.99
2185 2208 3.065655 CACGTATTTGTTGGGGAACGTA 58.934 45.455 0.00 0.00 41.17 3.57
2186 2209 3.123959 CACGTATTTGTTGGGGAACGTAG 59.876 47.826 0.00 0.00 41.17 3.51
2187 2210 2.094734 CGTATTTGTTGGGGAACGTAGC 59.905 50.000 0.00 0.00 0.00 3.58
2188 2211 2.279935 ATTTGTTGGGGAACGTAGCA 57.720 45.000 0.00 0.00 0.00 3.49
2189 2212 1.600023 TTTGTTGGGGAACGTAGCAG 58.400 50.000 0.00 0.00 0.00 4.24
2190 2213 0.759959 TTGTTGGGGAACGTAGCAGA 59.240 50.000 0.00 0.00 0.00 4.26
2191 2214 0.759959 TGTTGGGGAACGTAGCAGAA 59.240 50.000 0.00 0.00 0.00 3.02
2192 2215 1.141254 TGTTGGGGAACGTAGCAGAAA 59.859 47.619 0.00 0.00 0.00 2.52
2193 2216 2.224670 TGTTGGGGAACGTAGCAGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
2194 2217 2.817844 GTTGGGGAACGTAGCAGAAATT 59.182 45.455 0.00 0.00 0.00 1.82
2195 2218 2.706890 TGGGGAACGTAGCAGAAATTC 58.293 47.619 0.00 0.00 0.00 2.17
2196 2219 2.039216 TGGGGAACGTAGCAGAAATTCA 59.961 45.455 0.00 0.00 0.00 2.57
2197 2220 3.078837 GGGGAACGTAGCAGAAATTCAA 58.921 45.455 0.00 0.00 0.00 2.69
2198 2221 3.504520 GGGGAACGTAGCAGAAATTCAAA 59.495 43.478 0.00 0.00 0.00 2.69
2199 2222 4.022676 GGGGAACGTAGCAGAAATTCAAAA 60.023 41.667 0.00 0.00 0.00 2.44
2200 2223 5.508320 GGGGAACGTAGCAGAAATTCAAAAA 60.508 40.000 0.00 0.00 0.00 1.94
2201 2224 6.156519 GGGAACGTAGCAGAAATTCAAAAAT 58.843 36.000 0.00 0.00 0.00 1.82
2202 2225 6.645003 GGGAACGTAGCAGAAATTCAAAAATT 59.355 34.615 0.00 0.00 36.64 1.82
2203 2226 7.170828 GGGAACGTAGCAGAAATTCAAAAATTT 59.829 33.333 0.00 0.00 45.55 1.82
2204 2227 8.547894 GGAACGTAGCAGAAATTCAAAAATTTT 58.452 29.630 0.00 0.00 43.48 1.82
2205 2228 9.567917 GAACGTAGCAGAAATTCAAAAATTTTC 57.432 29.630 3.41 0.00 43.48 2.29
2206 2229 8.072238 ACGTAGCAGAAATTCAAAAATTTTCC 57.928 30.769 3.41 0.00 43.48 3.13
2207 2230 7.926018 ACGTAGCAGAAATTCAAAAATTTTCCT 59.074 29.630 3.41 0.00 43.48 3.36
2208 2231 9.405587 CGTAGCAGAAATTCAAAAATTTTCCTA 57.594 29.630 3.41 0.00 43.48 2.94
2210 2233 8.298030 AGCAGAAATTCAAAAATTTTCCTACG 57.702 30.769 3.41 0.00 43.48 3.51
2211 2234 7.926018 AGCAGAAATTCAAAAATTTTCCTACGT 59.074 29.630 3.41 0.00 43.48 3.57
2212 2235 9.187455 GCAGAAATTCAAAAATTTTCCTACGTA 57.813 29.630 3.41 0.00 43.48 3.57
2217 2240 9.634163 AATTCAAAAATTTTCCTACGTATCACC 57.366 29.630 3.41 0.00 30.79 4.02
2218 2241 7.747155 TCAAAAATTTTCCTACGTATCACCA 57.253 32.000 3.41 0.00 0.00 4.17
2219 2242 8.167605 TCAAAAATTTTCCTACGTATCACCAA 57.832 30.769 3.41 0.00 0.00 3.67
2220 2243 8.293867 TCAAAAATTTTCCTACGTATCACCAAG 58.706 33.333 3.41 0.00 0.00 3.61
2221 2244 7.989416 AAAATTTTCCTACGTATCACCAAGA 57.011 32.000 0.00 0.00 0.00 3.02
2222 2245 8.575649 AAAATTTTCCTACGTATCACCAAGAT 57.424 30.769 0.00 0.00 40.86 2.40
2223 2246 7.787725 AATTTTCCTACGTATCACCAAGATC 57.212 36.000 0.00 0.00 38.19 2.75
2224 2247 6.540438 TTTTCCTACGTATCACCAAGATCT 57.460 37.500 0.00 0.00 38.19 2.75
2225 2248 7.649533 TTTTCCTACGTATCACCAAGATCTA 57.350 36.000 0.00 0.00 38.19 1.98
2226 2249 7.834881 TTTCCTACGTATCACCAAGATCTAT 57.165 36.000 0.00 0.00 38.19 1.98
2227 2250 7.450124 TTCCTACGTATCACCAAGATCTATC 57.550 40.000 0.00 0.00 38.19 2.08
2228 2251 6.780901 TCCTACGTATCACCAAGATCTATCT 58.219 40.000 0.00 0.00 38.19 1.98
2229 2252 7.914859 TCCTACGTATCACCAAGATCTATCTA 58.085 38.462 0.00 0.00 38.19 1.98
2230 2253 8.549731 TCCTACGTATCACCAAGATCTATCTAT 58.450 37.037 0.00 0.00 38.19 1.98
2231 2254 8.616942 CCTACGTATCACCAAGATCTATCTATG 58.383 40.741 0.00 0.00 38.19 2.23
2232 2255 7.397892 ACGTATCACCAAGATCTATCTATGG 57.602 40.000 8.57 8.57 39.18 2.74
2233 2256 7.175797 ACGTATCACCAAGATCTATCTATGGA 58.824 38.462 15.80 0.00 37.92 3.41
2234 2257 7.338196 ACGTATCACCAAGATCTATCTATGGAG 59.662 40.741 15.80 8.98 37.92 3.86
2235 2258 7.554476 CGTATCACCAAGATCTATCTATGGAGA 59.446 40.741 15.80 13.49 38.10 3.71
2236 2259 7.959658 ATCACCAAGATCTATCTATGGAGAG 57.040 40.000 15.80 6.64 37.68 3.20
2237 2260 7.096402 TCACCAAGATCTATCTATGGAGAGA 57.904 40.000 15.80 5.84 42.87 3.10
2238 2261 6.945435 TCACCAAGATCTATCTATGGAGAGAC 59.055 42.308 15.80 1.08 41.74 3.36
2239 2262 6.152661 CACCAAGATCTATCTATGGAGAGACC 59.847 46.154 15.80 0.00 41.74 3.85
2240 2263 6.183361 ACCAAGATCTATCTATGGAGAGACCA 60.183 42.308 15.80 0.00 41.74 4.02
2241 2264 6.377996 CCAAGATCTATCTATGGAGAGACCAG 59.622 46.154 5.47 0.00 43.76 4.00
2242 2265 5.951747 AAGATCTATCTATGGAGAGACCAGC 59.048 44.000 5.47 0.00 43.76 4.85
2243 2266 6.468505 AAGATCTATCTATGGAGAGACCAGCA 60.469 42.308 5.47 0.00 43.76 4.41
2244 2267 7.915671 AAGATCTATCTATGGAGAGACCAGCAA 60.916 40.741 5.47 0.00 43.76 3.91
2247 2270 4.191243 TGGAGAGACCAGCAACGA 57.809 55.556 0.00 0.00 44.64 3.85
2248 2271 1.967535 TGGAGAGACCAGCAACGAG 59.032 57.895 0.00 0.00 44.64 4.18
2249 2272 0.827925 TGGAGAGACCAGCAACGAGT 60.828 55.000 0.00 0.00 44.64 4.18
2250 2273 1.174783 GGAGAGACCAGCAACGAGTA 58.825 55.000 0.00 0.00 38.79 2.59
2251 2274 1.133407 GGAGAGACCAGCAACGAGTAG 59.867 57.143 0.00 0.00 38.79 2.57
2252 2275 2.085320 GAGAGACCAGCAACGAGTAGA 58.915 52.381 0.00 0.00 0.00 2.59
2253 2276 2.488545 GAGAGACCAGCAACGAGTAGAA 59.511 50.000 0.00 0.00 0.00 2.10
2254 2277 2.891580 AGAGACCAGCAACGAGTAGAAA 59.108 45.455 0.00 0.00 0.00 2.52
2255 2278 3.057174 AGAGACCAGCAACGAGTAGAAAG 60.057 47.826 0.00 0.00 0.00 2.62
2256 2279 2.028930 AGACCAGCAACGAGTAGAAAGG 60.029 50.000 0.00 0.00 0.00 3.11
2257 2280 1.968493 ACCAGCAACGAGTAGAAAGGA 59.032 47.619 0.00 0.00 0.00 3.36
2258 2281 2.028930 ACCAGCAACGAGTAGAAAGGAG 60.029 50.000 0.00 0.00 0.00 3.69
2259 2282 2.231478 CCAGCAACGAGTAGAAAGGAGA 59.769 50.000 0.00 0.00 0.00 3.71
2260 2283 3.506810 CAGCAACGAGTAGAAAGGAGAG 58.493 50.000 0.00 0.00 0.00 3.20
2261 2284 2.494073 AGCAACGAGTAGAAAGGAGAGG 59.506 50.000 0.00 0.00 0.00 3.69
2262 2285 2.492484 GCAACGAGTAGAAAGGAGAGGA 59.508 50.000 0.00 0.00 0.00 3.71
2263 2286 3.428316 GCAACGAGTAGAAAGGAGAGGAG 60.428 52.174 0.00 0.00 0.00 3.69
2264 2287 4.011023 CAACGAGTAGAAAGGAGAGGAGA 58.989 47.826 0.00 0.00 0.00 3.71
2265 2288 3.881220 ACGAGTAGAAAGGAGAGGAGAG 58.119 50.000 0.00 0.00 0.00 3.20
2266 2289 3.264964 ACGAGTAGAAAGGAGAGGAGAGT 59.735 47.826 0.00 0.00 0.00 3.24
2267 2290 4.263594 ACGAGTAGAAAGGAGAGGAGAGTT 60.264 45.833 0.00 0.00 0.00 3.01
2268 2291 4.703093 CGAGTAGAAAGGAGAGGAGAGTTT 59.297 45.833 0.00 0.00 0.00 2.66
2269 2292 5.392595 CGAGTAGAAAGGAGAGGAGAGTTTG 60.393 48.000 0.00 0.00 0.00 2.93
2270 2293 3.694043 AGAAAGGAGAGGAGAGTTTGC 57.306 47.619 0.00 0.00 0.00 3.68
2271 2294 2.975489 AGAAAGGAGAGGAGAGTTTGCA 59.025 45.455 0.00 0.00 0.00 4.08
2272 2295 3.586618 AGAAAGGAGAGGAGAGTTTGCAT 59.413 43.478 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 3.490419 GCGTGAGTAATTCCATCGTAGGT 60.490 47.826 0.00 0.00 0.00 3.08
289 293 1.852157 ACCTTGCCATGAGGGTGGA 60.852 57.895 0.00 0.00 42.02 4.02
378 384 0.958876 AAACGTTCTCGGAATGGCCC 60.959 55.000 0.00 0.00 41.85 5.80
381 387 1.128692 GAGCAAACGTTCTCGGAATGG 59.871 52.381 0.00 0.69 41.85 3.16
451 457 5.479724 TGCATGATTTGAATGGAACTAACCA 59.520 36.000 0.00 0.00 44.41 3.67
546 552 3.065306 CAGCCGTGGGAGGTGTAA 58.935 61.111 0.00 0.00 0.00 2.41
560 566 1.369091 CCCACGTATCTTGGTGCAGC 61.369 60.000 9.47 9.47 32.85 5.25
561 567 1.369091 GCCCACGTATCTTGGTGCAG 61.369 60.000 0.00 0.00 33.13 4.41
590 596 6.573664 TCAATGAACATAGGGTCAAACAAG 57.426 37.500 0.00 0.00 0.00 3.16
594 600 5.887598 CCTCATCAATGAACATAGGGTCAAA 59.112 40.000 0.00 0.00 36.18 2.69
698 705 3.307691 CCCATTTCAGAGCTTGTACAGGA 60.308 47.826 9.51 0.00 0.00 3.86
772 779 3.484806 ACCAACACCGACCAGCCA 61.485 61.111 0.00 0.00 0.00 4.75
781 788 0.385390 CAACCTGCTTCACCAACACC 59.615 55.000 0.00 0.00 0.00 4.16
795 810 3.888930 CAGTGTTTATTGTGACCCAACCT 59.111 43.478 0.00 0.00 35.44 3.50
807 822 2.436417 AGTGCGCCATCAGTGTTTATT 58.564 42.857 4.18 0.00 0.00 1.40
852 867 2.282462 CTGGCCACACCTTCCACC 60.282 66.667 0.00 0.00 40.22 4.61
857 872 2.382770 TGTGACCTGGCCACACCTT 61.383 57.895 19.22 0.00 39.36 3.50
881 896 1.455849 CACCAGGCTCCAAGGAACA 59.544 57.895 4.71 0.00 0.00 3.18
910 925 2.436542 TGAAGGGGTCCGTTATACCATG 59.563 50.000 0.00 0.00 38.87 3.66
911 926 2.766736 TGAAGGGGTCCGTTATACCAT 58.233 47.619 0.00 0.00 38.87 3.55
915 930 1.342174 GCGATGAAGGGGTCCGTTATA 59.658 52.381 0.00 0.00 0.00 0.98
939 954 2.353011 CCCATCACGAAAAGCAAGCAAT 60.353 45.455 0.00 0.00 0.00 3.56
954 969 1.311859 GCGCAAAGATCATCCCATCA 58.688 50.000 0.30 0.00 0.00 3.07
957 972 0.810648 GTTGCGCAAAGATCATCCCA 59.189 50.000 26.87 0.00 0.00 4.37
984 1000 8.215736 TCAATCTCCATAATCACATGTGAGAAT 58.784 33.333 30.63 22.84 43.61 2.40
1042 1058 0.034574 ACTGACCTGGTGTTGTTGCA 60.035 50.000 2.82 0.00 0.00 4.08
1056 1072 0.460987 AGATAGGCGCTGCAACTGAC 60.461 55.000 7.64 0.00 0.00 3.51
1125 1141 0.839277 TGGCATCCCTACTGACATGG 59.161 55.000 0.00 0.00 0.00 3.66
1148 1164 2.747822 GCACACTGATGCGCCAGAG 61.748 63.158 18.81 13.71 37.59 3.35
1169 1185 5.817816 GTGCCATCAAGTGTACTAGCTAAAT 59.182 40.000 0.00 0.00 0.00 1.40
1218 1234 3.971032 AGGCAAGAAACAAGAAACTCG 57.029 42.857 0.00 0.00 0.00 4.18
1264 1280 9.698617 GCGAATTCAAGAACTTTATTAACGTAT 57.301 29.630 6.22 0.00 0.00 3.06
1309 1325 6.534079 ACGATCTTACTTGCACTGGTAATTAC 59.466 38.462 7.09 7.09 0.00 1.89
1310 1326 6.636705 ACGATCTTACTTGCACTGGTAATTA 58.363 36.000 0.00 0.00 0.00 1.40
1311 1327 5.488341 ACGATCTTACTTGCACTGGTAATT 58.512 37.500 0.00 0.00 0.00 1.40
1313 1329 4.530710 ACGATCTTACTTGCACTGGTAA 57.469 40.909 0.00 0.00 0.00 2.85
1314 1330 4.530710 AACGATCTTACTTGCACTGGTA 57.469 40.909 0.00 0.00 0.00 3.25
1316 1332 4.749245 AAAACGATCTTACTTGCACTGG 57.251 40.909 0.00 0.00 0.00 4.00
1317 1333 5.049405 AGGAAAAACGATCTTACTTGCACTG 60.049 40.000 0.00 0.00 0.00 3.66
1318 1334 5.063880 AGGAAAAACGATCTTACTTGCACT 58.936 37.500 0.00 0.00 0.00 4.40
1319 1335 5.179555 AGAGGAAAAACGATCTTACTTGCAC 59.820 40.000 0.00 0.00 0.00 4.57
1320 1336 5.305585 AGAGGAAAAACGATCTTACTTGCA 58.694 37.500 0.00 0.00 0.00 4.08
1321 1337 5.408604 TGAGAGGAAAAACGATCTTACTTGC 59.591 40.000 0.00 0.00 0.00 4.01
1322 1338 6.400091 CGTGAGAGGAAAAACGATCTTACTTG 60.400 42.308 0.00 0.00 38.27 3.16
1323 1339 5.634020 CGTGAGAGGAAAAACGATCTTACTT 59.366 40.000 0.00 0.00 38.27 2.24
1324 1340 5.162075 CGTGAGAGGAAAAACGATCTTACT 58.838 41.667 0.00 0.00 38.27 2.24
1325 1341 4.922103 ACGTGAGAGGAAAAACGATCTTAC 59.078 41.667 0.57 0.00 39.27 2.34
1326 1342 5.048224 AGACGTGAGAGGAAAAACGATCTTA 60.048 40.000 0.00 0.00 39.27 2.10
1327 1343 3.988517 GACGTGAGAGGAAAAACGATCTT 59.011 43.478 0.00 0.00 39.27 2.40
1328 1344 3.256136 AGACGTGAGAGGAAAAACGATCT 59.744 43.478 0.00 0.00 39.27 2.75
1345 1361 3.936203 TTCCAGCCGCCAAGACGT 61.936 61.111 0.00 0.00 0.00 4.34
1374 1390 0.624254 TAGAAGACTGGCCTCCTCGA 59.376 55.000 3.32 0.00 0.00 4.04
1376 1392 0.750249 GCTAGAAGACTGGCCTCCTC 59.250 60.000 3.32 0.00 43.30 3.71
1424 1443 1.524863 CCACCGAAGACTGAGGTCGT 61.525 60.000 0.00 0.00 46.29 4.34
1471 1491 8.012957 ACTACGAGAGAGTAAAAATGATCCAT 57.987 34.615 0.00 0.00 0.00 3.41
1531 1551 0.032130 AGTGTTGTCATCGTCGCTGT 59.968 50.000 0.00 0.00 0.00 4.40
1533 1556 0.313987 TCAGTGTTGTCATCGTCGCT 59.686 50.000 0.00 0.00 0.00 4.93
1565 1588 2.526432 GCCTCGTTAGGGATGGATCTA 58.474 52.381 0.00 0.00 43.87 1.98
1761 1784 1.098869 AGATGTCGTCGATGCAGACT 58.901 50.000 0.00 3.43 38.90 3.24
1805 1828 1.302431 CTGCCATCCACGAACCACA 60.302 57.895 0.00 0.00 0.00 4.17
1855 1878 1.443407 CCAGATCTGGCACCCTACG 59.557 63.158 28.45 2.08 44.73 3.51
1875 1898 1.153369 CCCAGACACGCCATCGAAT 60.153 57.895 0.00 0.00 39.41 3.34
1926 1949 2.239400 GGCTCACCAAAAGTAAAGCCT 58.761 47.619 4.00 0.00 46.23 4.58
2027 2050 1.146930 CACCATAGCAGCCACCGAT 59.853 57.895 0.00 0.00 0.00 4.18
2053 2076 0.962356 CCAATGTCTGTCACCTGCCC 60.962 60.000 0.00 0.00 0.00 5.36
2066 2089 2.369860 TCTCTGAGCTTGACACCAATGT 59.630 45.455 0.00 0.00 43.71 2.71
2068 2091 3.008813 ACATCTCTGAGCTTGACACCAAT 59.991 43.478 12.47 0.00 0.00 3.16
2104 2127 6.822442 TGTAAGGACAGACATGACAAAACTA 58.178 36.000 0.00 0.00 0.00 2.24
2161 2184 2.188062 TCCCCAACAAATACGTGTCC 57.812 50.000 0.00 0.00 0.00 4.02
2172 2195 0.759959 TTCTGCTACGTTCCCCAACA 59.240 50.000 0.00 0.00 32.14 3.33
2173 2196 1.886886 TTTCTGCTACGTTCCCCAAC 58.113 50.000 0.00 0.00 0.00 3.77
2174 2197 2.871096 ATTTCTGCTACGTTCCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
2175 2198 2.039216 TGAATTTCTGCTACGTTCCCCA 59.961 45.455 0.00 0.00 0.00 4.96
2176 2199 2.706890 TGAATTTCTGCTACGTTCCCC 58.293 47.619 0.00 0.00 0.00 4.81
2177 2200 4.759516 TTTGAATTTCTGCTACGTTCCC 57.240 40.909 0.00 0.00 0.00 3.97
2178 2201 7.637709 AATTTTTGAATTTCTGCTACGTTCC 57.362 32.000 0.00 0.00 0.00 3.62
2179 2202 9.567917 GAAAATTTTTGAATTTCTGCTACGTTC 57.432 29.630 4.63 0.00 31.66 3.95
2180 2203 8.547894 GGAAAATTTTTGAATTTCTGCTACGTT 58.452 29.630 4.63 0.00 34.34 3.99
2181 2204 7.926018 AGGAAAATTTTTGAATTTCTGCTACGT 59.074 29.630 4.63 0.00 34.34 3.57
2182 2205 8.298030 AGGAAAATTTTTGAATTTCTGCTACG 57.702 30.769 4.63 0.00 34.34 3.51
2184 2207 9.405587 CGTAGGAAAATTTTTGAATTTCTGCTA 57.594 29.630 4.63 0.00 34.34 3.49
2185 2208 7.926018 ACGTAGGAAAATTTTTGAATTTCTGCT 59.074 29.630 4.63 0.00 34.34 4.24
2186 2209 8.072238 ACGTAGGAAAATTTTTGAATTTCTGC 57.928 30.769 4.63 0.00 34.34 4.26
2191 2214 9.634163 GGTGATACGTAGGAAAATTTTTGAATT 57.366 29.630 4.63 0.00 0.00 2.17
2192 2215 8.798402 TGGTGATACGTAGGAAAATTTTTGAAT 58.202 29.630 4.63 0.00 0.00 2.57
2193 2216 8.167605 TGGTGATACGTAGGAAAATTTTTGAA 57.832 30.769 4.63 0.00 0.00 2.69
2194 2217 7.747155 TGGTGATACGTAGGAAAATTTTTGA 57.253 32.000 4.63 0.00 0.00 2.69
2195 2218 8.293867 TCTTGGTGATACGTAGGAAAATTTTTG 58.706 33.333 4.63 0.00 0.00 2.44
2196 2219 8.398878 TCTTGGTGATACGTAGGAAAATTTTT 57.601 30.769 4.63 0.00 0.00 1.94
2197 2220 7.989416 TCTTGGTGATACGTAGGAAAATTTT 57.011 32.000 2.28 2.28 0.00 1.82
2198 2221 8.047310 AGATCTTGGTGATACGTAGGAAAATTT 58.953 33.333 0.08 0.00 35.14 1.82
2199 2222 7.565680 AGATCTTGGTGATACGTAGGAAAATT 58.434 34.615 0.08 0.00 35.14 1.82
2200 2223 7.125792 AGATCTTGGTGATACGTAGGAAAAT 57.874 36.000 0.08 0.00 35.14 1.82
2201 2224 6.540438 AGATCTTGGTGATACGTAGGAAAA 57.460 37.500 0.08 0.00 35.14 2.29
2202 2225 7.724506 AGATAGATCTTGGTGATACGTAGGAAA 59.275 37.037 0.00 0.00 35.14 3.13
2203 2226 7.232188 AGATAGATCTTGGTGATACGTAGGAA 58.768 38.462 0.00 0.00 35.14 3.36
2204 2227 6.780901 AGATAGATCTTGGTGATACGTAGGA 58.219 40.000 0.00 0.00 35.14 2.94
2205 2228 8.616942 CATAGATAGATCTTGGTGATACGTAGG 58.383 40.741 0.00 0.00 38.32 3.18
2206 2229 8.616942 CCATAGATAGATCTTGGTGATACGTAG 58.383 40.741 0.00 0.00 38.32 3.51
2207 2230 8.326529 TCCATAGATAGATCTTGGTGATACGTA 58.673 37.037 0.00 0.00 38.32 3.57
2208 2231 7.175797 TCCATAGATAGATCTTGGTGATACGT 58.824 38.462 0.00 0.00 38.32 3.57
2209 2232 7.554476 TCTCCATAGATAGATCTTGGTGATACG 59.446 40.741 0.00 0.00 38.32 3.06
2210 2233 8.815565 TCTCCATAGATAGATCTTGGTGATAC 57.184 38.462 0.00 0.00 38.32 2.24
2211 2234 8.840751 TCTCTCCATAGATAGATCTTGGTGATA 58.159 37.037 13.06 6.19 37.20 2.15
2212 2235 7.615365 GTCTCTCCATAGATAGATCTTGGTGAT 59.385 40.741 13.06 0.00 37.20 3.06
2213 2236 6.945435 GTCTCTCCATAGATAGATCTTGGTGA 59.055 42.308 0.00 7.70 38.32 4.02
2214 2237 6.152661 GGTCTCTCCATAGATAGATCTTGGTG 59.847 46.154 0.00 3.27 36.89 4.17
2215 2238 6.183361 TGGTCTCTCCATAGATAGATCTTGGT 60.183 42.308 0.00 0.00 41.93 3.67
2216 2239 6.252233 TGGTCTCTCCATAGATAGATCTTGG 58.748 44.000 0.00 1.69 41.93 3.61
2217 2240 6.127647 GCTGGTCTCTCCATAGATAGATCTTG 60.128 46.154 0.00 0.00 46.12 3.02
2218 2241 5.951747 GCTGGTCTCTCCATAGATAGATCTT 59.048 44.000 0.00 0.00 46.12 2.40
2219 2242 5.015072 TGCTGGTCTCTCCATAGATAGATCT 59.985 44.000 0.00 0.00 46.12 2.75
2220 2243 5.260424 TGCTGGTCTCTCCATAGATAGATC 58.740 45.833 0.00 0.00 46.12 2.75
2221 2244 5.268131 TGCTGGTCTCTCCATAGATAGAT 57.732 43.478 0.00 0.00 46.12 1.98
2222 2245 4.731313 TGCTGGTCTCTCCATAGATAGA 57.269 45.455 0.00 0.00 46.12 1.98
2223 2246 4.320861 CGTTGCTGGTCTCTCCATAGATAG 60.321 50.000 0.00 0.00 46.12 2.08
2224 2247 3.570125 CGTTGCTGGTCTCTCCATAGATA 59.430 47.826 0.00 0.00 46.12 1.98
2225 2248 2.363680 CGTTGCTGGTCTCTCCATAGAT 59.636 50.000 0.00 0.00 46.12 1.98
2226 2249 1.751351 CGTTGCTGGTCTCTCCATAGA 59.249 52.381 0.00 0.00 46.12 1.98
2227 2250 1.751351 TCGTTGCTGGTCTCTCCATAG 59.249 52.381 0.00 0.00 46.12 2.23
2228 2251 1.751351 CTCGTTGCTGGTCTCTCCATA 59.249 52.381 0.00 0.00 46.12 2.74
2229 2252 0.534412 CTCGTTGCTGGTCTCTCCAT 59.466 55.000 0.00 0.00 46.12 3.41
2230 2253 0.827925 ACTCGTTGCTGGTCTCTCCA 60.828 55.000 0.00 0.00 45.01 3.86
2231 2254 1.133407 CTACTCGTTGCTGGTCTCTCC 59.867 57.143 0.00 0.00 0.00 3.71
2232 2255 2.085320 TCTACTCGTTGCTGGTCTCTC 58.915 52.381 0.00 0.00 0.00 3.20
2233 2256 2.201921 TCTACTCGTTGCTGGTCTCT 57.798 50.000 0.00 0.00 0.00 3.10
2234 2257 3.246619 CTTTCTACTCGTTGCTGGTCTC 58.753 50.000 0.00 0.00 0.00 3.36
2235 2258 2.028930 CCTTTCTACTCGTTGCTGGTCT 60.029 50.000 0.00 0.00 0.00 3.85
2236 2259 2.029290 TCCTTTCTACTCGTTGCTGGTC 60.029 50.000 0.00 0.00 0.00 4.02
2237 2260 1.968493 TCCTTTCTACTCGTTGCTGGT 59.032 47.619 0.00 0.00 0.00 4.00
2238 2261 2.231478 TCTCCTTTCTACTCGTTGCTGG 59.769 50.000 0.00 0.00 0.00 4.85
2239 2262 3.506810 CTCTCCTTTCTACTCGTTGCTG 58.493 50.000 0.00 0.00 0.00 4.41
2240 2263 2.494073 CCTCTCCTTTCTACTCGTTGCT 59.506 50.000 0.00 0.00 0.00 3.91
2241 2264 2.492484 TCCTCTCCTTTCTACTCGTTGC 59.508 50.000 0.00 0.00 0.00 4.17
2242 2265 4.011023 TCTCCTCTCCTTTCTACTCGTTG 58.989 47.826 0.00 0.00 0.00 4.10
2243 2266 4.263594 ACTCTCCTCTCCTTTCTACTCGTT 60.264 45.833 0.00 0.00 0.00 3.85
2244 2267 3.264964 ACTCTCCTCTCCTTTCTACTCGT 59.735 47.826 0.00 0.00 0.00 4.18
2245 2268 3.881220 ACTCTCCTCTCCTTTCTACTCG 58.119 50.000 0.00 0.00 0.00 4.18
2246 2269 5.623596 GCAAACTCTCCTCTCCTTTCTACTC 60.624 48.000 0.00 0.00 0.00 2.59
2247 2270 4.221924 GCAAACTCTCCTCTCCTTTCTACT 59.778 45.833 0.00 0.00 0.00 2.57
2248 2271 4.021016 TGCAAACTCTCCTCTCCTTTCTAC 60.021 45.833 0.00 0.00 0.00 2.59
2249 2272 4.160329 TGCAAACTCTCCTCTCCTTTCTA 58.840 43.478 0.00 0.00 0.00 2.10
2250 2273 2.975489 TGCAAACTCTCCTCTCCTTTCT 59.025 45.455 0.00 0.00 0.00 2.52
2251 2274 3.409026 TGCAAACTCTCCTCTCCTTTC 57.591 47.619 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.