Multiple sequence alignment - TraesCS7A01G332300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G332300 chr7A 100.000 1502 0 0 763 2264 485690014 485688513 0.000000e+00 2774
1 TraesCS7A01G332300 chr7A 96.203 1185 44 1 776 1959 485698119 485696935 0.000000e+00 1938
2 TraesCS7A01G332300 chr7A 100.000 316 0 0 1 316 485690776 485690461 3.240000e-163 584
3 TraesCS7A01G332300 chr7A 96.845 317 8 2 1 315 485698868 485698552 1.540000e-146 529
4 TraesCS7A01G332300 chr7A 92.787 305 22 0 1960 2264 568804145 568803841 2.060000e-120 442
5 TraesCS7A01G332300 chr2A 96.578 1198 40 1 763 1959 485967432 485968629 0.000000e+00 1984
6 TraesCS7A01G332300 chr5A 96.324 1197 44 0 763 1959 334649849 334648653 0.000000e+00 1967
7 TraesCS7A01G332300 chr5A 97.468 316 7 1 1 315 334650559 334650244 2.560000e-149 538
8 TraesCS7A01G332300 chr5A 96.530 317 9 2 1 315 334642228 334641912 7.160000e-145 523
9 TraesCS7A01G332300 chr3B 95.750 1200 47 3 763 1959 234961609 234960411 0.000000e+00 1930
10 TraesCS7A01G332300 chr3B 93.755 1201 67 7 763 1959 116637933 116636737 0.000000e+00 1796
11 TraesCS7A01G332300 chr3B 95.166 1117 50 3 847 1960 234953080 234951965 0.000000e+00 1760
12 TraesCS7A01G332300 chr3B 95.372 1102 47 3 763 1862 116649417 116648318 0.000000e+00 1749
13 TraesCS7A01G332300 chr3A 94.240 1198 63 4 763 1959 174791242 174790050 0.000000e+00 1825
14 TraesCS7A01G332300 chr3A 96.190 315 12 0 1 315 174792014 174791700 1.200000e-142 516
15 TraesCS7A01G332300 chr3A 95.886 316 12 1 1 315 174769094 174768779 5.580000e-141 510
16 TraesCS7A01G332300 chr3A 95.625 320 8 3 2 315 595748816 595749135 2.010000e-140 508
17 TraesCS7A01G332300 chr3A 83.854 192 26 5 1770 1957 585285939 585286129 6.430000e-41 178
18 TraesCS7A01G332300 chr7B 93.781 1206 62 8 763 1959 388612809 388614010 0.000000e+00 1799
19 TraesCS7A01G332300 chr1A 95.820 311 12 1 1 310 39076430 39076120 3.360000e-138 501
20 TraesCS7A01G332300 chr1A 95.253 316 14 1 1 315 39063668 39063353 1.210000e-137 499
21 TraesCS7A01G332300 chr1B 94.322 317 15 2 2 315 217618089 217618405 1.220000e-132 483
22 TraesCS7A01G332300 chr6D 92.787 305 22 0 1960 2264 223348213 223348517 2.060000e-120 442
23 TraesCS7A01G332300 chr6D 92.459 305 23 0 1960 2264 109656491 109656795 9.600000e-119 436
24 TraesCS7A01G332300 chr6D 92.459 305 23 0 1960 2264 128724681 128724377 9.600000e-119 436
25 TraesCS7A01G332300 chr6D 92.459 305 23 0 1960 2264 223374232 223374536 9.600000e-119 436
26 TraesCS7A01G332300 chr6D 92.459 305 23 0 1960 2264 226804101 226803797 9.600000e-119 436
27 TraesCS7A01G332300 chr3D 92.787 305 22 0 1960 2264 256311776 256312080 2.060000e-120 442
28 TraesCS7A01G332300 chr3D 92.459 305 23 0 1960 2264 346378462 346378766 9.600000e-119 436
29 TraesCS7A01G332300 chr4D 92.739 303 22 0 1962 2264 202480352 202480050 2.670000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G332300 chr7A 485688513 485690776 2263 True 1679.0 2774 100.000 1 2264 2 chr7A.!!$R2 2263
1 TraesCS7A01G332300 chr7A 485696935 485698868 1933 True 1233.5 1938 96.524 1 1959 2 chr7A.!!$R3 1958
2 TraesCS7A01G332300 chr2A 485967432 485968629 1197 False 1984.0 1984 96.578 763 1959 1 chr2A.!!$F1 1196
3 TraesCS7A01G332300 chr5A 334648653 334650559 1906 True 1252.5 1967 96.896 1 1959 2 chr5A.!!$R2 1958
4 TraesCS7A01G332300 chr3B 234960411 234961609 1198 True 1930.0 1930 95.750 763 1959 1 chr3B.!!$R4 1196
5 TraesCS7A01G332300 chr3B 116636737 116637933 1196 True 1796.0 1796 93.755 763 1959 1 chr3B.!!$R1 1196
6 TraesCS7A01G332300 chr3B 234951965 234953080 1115 True 1760.0 1760 95.166 847 1960 1 chr3B.!!$R3 1113
7 TraesCS7A01G332300 chr3B 116648318 116649417 1099 True 1749.0 1749 95.372 763 1862 1 chr3B.!!$R2 1099
8 TraesCS7A01G332300 chr3A 174790050 174792014 1964 True 1170.5 1825 95.215 1 1959 2 chr3A.!!$R2 1958
9 TraesCS7A01G332300 chr7B 388612809 388614010 1201 False 1799.0 1799 93.781 763 1959 1 chr7B.!!$F1 1196

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 295 1.071857 GGGGCCCACTAGTTAGTATGC 59.928 57.143 26.86 0.0 34.13 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2151 2433 0.108992 CAGCATGTTGGTGCCATGTC 60.109 55.0 0.85 0.0 46.19 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 86 1.339055 GCTAGCCACAGTGGATGACAA 60.339 52.381 24.96 0.10 40.96 3.18
97 98 2.290896 TGGATGACAAATGGGTCCAGAC 60.291 50.000 0.00 0.00 36.97 3.51
293 295 1.071857 GGGGCCCACTAGTTAGTATGC 59.928 57.143 26.86 0.00 34.13 3.14
315 318 4.729868 CAATTAGCAGGGGTAGCCTAATT 58.270 43.478 11.48 10.04 31.63 1.40
1292 1565 1.005394 GACGAGCGAGGGGAAAACA 60.005 57.895 0.00 0.00 0.00 2.83
1308 1581 1.145571 AACAGTGGGCTAGGGTTTCA 58.854 50.000 0.00 0.00 0.00 2.69
1334 1608 1.276622 GGAGGGAGCAACCTTGTAGA 58.723 55.000 0.40 0.00 42.10 2.59
1356 1630 2.311854 CCAAGGGGAGTGGATGGCT 61.312 63.158 0.00 0.00 38.54 4.75
1434 1708 0.708802 AGAGGAAGGGGAACGACCTA 59.291 55.000 0.00 0.00 37.35 3.08
1727 2009 7.349598 AGATGCTGGACCACTAAATAATTTCT 58.650 34.615 0.00 0.00 0.00 2.52
1758 2040 5.007682 CCTTCGGAATCCAAAAGAGGTTTA 58.992 41.667 11.66 0.00 0.00 2.01
1778 2060 9.479549 AGGTTTATTCCAACATGACAAATATCT 57.520 29.630 0.00 0.00 0.00 1.98
1818 2100 9.462174 CACACTTTGAACATTTTAGCTTTCATA 57.538 29.630 0.00 0.00 0.00 2.15
1960 2242 2.038387 AATTATCAGGGCGTCACACC 57.962 50.000 0.00 0.00 0.00 4.16
1961 2243 0.908910 ATTATCAGGGCGTCACACCA 59.091 50.000 0.00 0.00 0.00 4.17
1962 2244 0.249120 TTATCAGGGCGTCACACCAG 59.751 55.000 0.00 0.00 0.00 4.00
1963 2245 0.902984 TATCAGGGCGTCACACCAGT 60.903 55.000 0.00 0.00 0.00 4.00
1965 2247 4.626081 AGGGCGTCACACCAGTGC 62.626 66.667 0.00 0.00 45.49 4.40
1966 2248 4.927782 GGGCGTCACACCAGTGCA 62.928 66.667 0.00 0.00 45.49 4.57
1967 2249 3.649986 GGCGTCACACCAGTGCAC 61.650 66.667 9.40 9.40 45.49 4.57
1968 2250 3.649986 GCGTCACACCAGTGCACC 61.650 66.667 14.63 0.00 45.49 5.01
1969 2251 2.203001 CGTCACACCAGTGCACCA 60.203 61.111 14.63 0.00 45.49 4.17
1970 2252 1.817520 CGTCACACCAGTGCACCAA 60.818 57.895 14.63 0.00 45.49 3.67
1971 2253 1.372838 CGTCACACCAGTGCACCAAA 61.373 55.000 14.63 0.00 45.49 3.28
1972 2254 0.381801 GTCACACCAGTGCACCAAAG 59.618 55.000 14.63 4.23 45.49 2.77
1973 2255 0.034574 TCACACCAGTGCACCAAAGT 60.035 50.000 14.63 4.93 45.49 2.66
1974 2256 0.817013 CACACCAGTGCACCAAAGTT 59.183 50.000 14.63 0.00 39.21 2.66
1975 2257 0.817013 ACACCAGTGCACCAAAGTTG 59.183 50.000 14.63 3.66 0.00 3.16
1976 2258 0.528249 CACCAGTGCACCAAAGTTGC 60.528 55.000 14.63 0.00 0.00 4.17
1977 2259 0.684153 ACCAGTGCACCAAAGTTGCT 60.684 50.000 14.63 0.00 0.00 3.91
1978 2260 0.031178 CCAGTGCACCAAAGTTGCTC 59.969 55.000 14.63 0.00 0.00 4.26
1979 2261 0.740149 CAGTGCACCAAAGTTGCTCA 59.260 50.000 14.63 0.00 0.00 4.26
1980 2262 1.134753 CAGTGCACCAAAGTTGCTCAA 59.865 47.619 14.63 0.00 0.00 3.02
1981 2263 1.824230 AGTGCACCAAAGTTGCTCAAA 59.176 42.857 14.63 0.00 0.00 2.69
1982 2264 2.233431 AGTGCACCAAAGTTGCTCAAAA 59.767 40.909 14.63 0.00 0.00 2.44
1983 2265 2.999355 GTGCACCAAAGTTGCTCAAAAA 59.001 40.909 5.22 0.00 0.00 1.94
2001 2283 2.995466 AAATCGCATGTGTGTCCTTG 57.005 45.000 6.09 0.00 0.00 3.61
2002 2284 1.167851 AATCGCATGTGTGTCCTTGG 58.832 50.000 6.09 0.00 0.00 3.61
2003 2285 0.677731 ATCGCATGTGTGTCCTTGGG 60.678 55.000 6.09 0.00 0.00 4.12
2004 2286 1.600636 CGCATGTGTGTCCTTGGGT 60.601 57.895 0.00 0.00 0.00 4.51
2005 2287 1.855213 CGCATGTGTGTCCTTGGGTG 61.855 60.000 0.00 0.00 0.00 4.61
2006 2288 0.537143 GCATGTGTGTCCTTGGGTGA 60.537 55.000 0.00 0.00 0.00 4.02
2007 2289 1.979855 CATGTGTGTCCTTGGGTGAA 58.020 50.000 0.00 0.00 0.00 3.18
2008 2290 2.517959 CATGTGTGTCCTTGGGTGAAT 58.482 47.619 0.00 0.00 0.00 2.57
2009 2291 2.746279 TGTGTGTCCTTGGGTGAATT 57.254 45.000 0.00 0.00 0.00 2.17
2010 2292 3.025322 TGTGTGTCCTTGGGTGAATTT 57.975 42.857 0.00 0.00 0.00 1.82
2011 2293 2.955660 TGTGTGTCCTTGGGTGAATTTC 59.044 45.455 0.00 0.00 0.00 2.17
2012 2294 3.222603 GTGTGTCCTTGGGTGAATTTCT 58.777 45.455 0.00 0.00 0.00 2.52
2013 2295 4.141367 TGTGTGTCCTTGGGTGAATTTCTA 60.141 41.667 0.00 0.00 0.00 2.10
2014 2296 4.455877 GTGTGTCCTTGGGTGAATTTCTAG 59.544 45.833 0.00 0.00 0.00 2.43
2015 2297 4.010349 GTGTCCTTGGGTGAATTTCTAGG 58.990 47.826 0.00 0.00 0.00 3.02
2016 2298 3.655777 TGTCCTTGGGTGAATTTCTAGGT 59.344 43.478 0.00 0.00 0.00 3.08
2017 2299 4.262617 GTCCTTGGGTGAATTTCTAGGTC 58.737 47.826 0.00 0.00 0.00 3.85
2018 2300 4.019231 GTCCTTGGGTGAATTTCTAGGTCT 60.019 45.833 0.00 0.00 0.00 3.85
2019 2301 4.225267 TCCTTGGGTGAATTTCTAGGTCTC 59.775 45.833 0.00 0.00 0.00 3.36
2020 2302 4.019321 CCTTGGGTGAATTTCTAGGTCTCA 60.019 45.833 0.00 0.00 0.00 3.27
2021 2303 5.339530 CCTTGGGTGAATTTCTAGGTCTCAT 60.340 44.000 0.00 0.00 0.00 2.90
2022 2304 5.102953 TGGGTGAATTTCTAGGTCTCATG 57.897 43.478 0.00 0.00 0.00 3.07
2023 2305 3.879892 GGGTGAATTTCTAGGTCTCATGC 59.120 47.826 0.00 0.00 0.00 4.06
2024 2306 4.517285 GGTGAATTTCTAGGTCTCATGCA 58.483 43.478 0.00 0.00 0.00 3.96
2025 2307 4.943705 GGTGAATTTCTAGGTCTCATGCAA 59.056 41.667 0.00 0.00 0.00 4.08
2026 2308 5.065731 GGTGAATTTCTAGGTCTCATGCAAG 59.934 44.000 0.00 0.00 0.00 4.01
2027 2309 5.877012 GTGAATTTCTAGGTCTCATGCAAGA 59.123 40.000 0.00 0.00 0.00 3.02
2028 2310 6.036953 GTGAATTTCTAGGTCTCATGCAAGAG 59.963 42.308 12.75 12.75 36.97 2.85
2029 2311 5.946942 ATTTCTAGGTCTCATGCAAGAGA 57.053 39.130 17.33 17.33 42.12 3.10
2030 2312 5.946942 TTTCTAGGTCTCATGCAAGAGAT 57.053 39.130 23.25 11.92 45.61 2.75
2031 2313 5.946942 TTCTAGGTCTCATGCAAGAGATT 57.053 39.130 23.25 16.77 45.61 2.40
2032 2314 5.273674 TCTAGGTCTCATGCAAGAGATTG 57.726 43.478 23.25 13.74 45.61 2.67
2033 2315 3.278668 AGGTCTCATGCAAGAGATTGG 57.721 47.619 23.25 0.00 45.61 3.16
2034 2316 2.842496 AGGTCTCATGCAAGAGATTGGA 59.158 45.455 23.25 0.00 45.61 3.53
2035 2317 3.118334 AGGTCTCATGCAAGAGATTGGAG 60.118 47.826 23.25 5.51 45.61 3.86
2036 2318 3.370315 GGTCTCATGCAAGAGATTGGAGT 60.370 47.826 23.25 0.00 45.61 3.85
2037 2319 3.622163 GTCTCATGCAAGAGATTGGAGTG 59.378 47.826 23.25 0.00 45.61 3.51
2038 2320 3.516700 TCTCATGCAAGAGATTGGAGTGA 59.483 43.478 17.33 0.00 39.62 3.41
2039 2321 4.019950 TCTCATGCAAGAGATTGGAGTGAA 60.020 41.667 17.33 0.00 39.62 3.18
2040 2322 4.654915 TCATGCAAGAGATTGGAGTGAAA 58.345 39.130 0.00 0.00 0.00 2.69
2041 2323 5.258841 TCATGCAAGAGATTGGAGTGAAAT 58.741 37.500 0.00 0.00 0.00 2.17
2042 2324 5.713389 TCATGCAAGAGATTGGAGTGAAATT 59.287 36.000 0.00 0.00 0.00 1.82
2043 2325 5.633830 TGCAAGAGATTGGAGTGAAATTC 57.366 39.130 0.00 0.00 0.00 2.17
2044 2326 5.072055 TGCAAGAGATTGGAGTGAAATTCA 58.928 37.500 0.00 0.00 0.00 2.57
2045 2327 5.535783 TGCAAGAGATTGGAGTGAAATTCAA 59.464 36.000 0.00 0.00 0.00 2.69
2046 2328 6.040729 TGCAAGAGATTGGAGTGAAATTCAAA 59.959 34.615 0.00 0.00 0.00 2.69
2047 2329 6.364435 GCAAGAGATTGGAGTGAAATTCAAAC 59.636 38.462 0.00 0.00 0.00 2.93
2048 2330 7.428020 CAAGAGATTGGAGTGAAATTCAAACA 58.572 34.615 0.00 0.00 0.00 2.83
2049 2331 7.771927 AGAGATTGGAGTGAAATTCAAACAT 57.228 32.000 0.00 0.00 0.00 2.71
2050 2332 7.824672 AGAGATTGGAGTGAAATTCAAACATC 58.175 34.615 0.00 0.00 0.00 3.06
2051 2333 7.668886 AGAGATTGGAGTGAAATTCAAACATCT 59.331 33.333 0.00 1.20 0.00 2.90
2052 2334 7.600065 AGATTGGAGTGAAATTCAAACATCTG 58.400 34.615 0.00 0.00 0.00 2.90
2053 2335 5.710513 TGGAGTGAAATTCAAACATCTGG 57.289 39.130 0.00 0.00 0.00 3.86
2054 2336 4.523943 TGGAGTGAAATTCAAACATCTGGG 59.476 41.667 0.00 0.00 0.00 4.45
2055 2337 4.488879 GAGTGAAATTCAAACATCTGGGC 58.511 43.478 0.00 0.00 0.00 5.36
2056 2338 3.057315 AGTGAAATTCAAACATCTGGGCG 60.057 43.478 0.00 0.00 0.00 6.13
2057 2339 2.890311 TGAAATTCAAACATCTGGGCGT 59.110 40.909 0.00 0.00 0.00 5.68
2058 2340 3.057596 TGAAATTCAAACATCTGGGCGTC 60.058 43.478 0.00 0.00 0.00 5.19
2059 2341 1.086696 ATTCAAACATCTGGGCGTCG 58.913 50.000 0.00 0.00 0.00 5.12
2060 2342 0.250124 TTCAAACATCTGGGCGTCGT 60.250 50.000 0.00 0.00 0.00 4.34
2061 2343 0.948623 TCAAACATCTGGGCGTCGTG 60.949 55.000 0.00 0.00 0.00 4.35
2062 2344 1.671054 AAACATCTGGGCGTCGTGG 60.671 57.895 0.00 0.00 0.00 4.94
2063 2345 4.760047 ACATCTGGGCGTCGTGGC 62.760 66.667 0.00 0.00 43.88 5.01
2064 2346 4.457496 CATCTGGGCGTCGTGGCT 62.457 66.667 0.00 0.00 44.11 4.75
2065 2347 4.148825 ATCTGGGCGTCGTGGCTC 62.149 66.667 0.00 0.00 44.11 4.70
2078 2360 2.504519 GGCTCGGCCGGTAAGATT 59.495 61.111 27.83 0.00 39.62 2.40
2079 2361 1.887707 GGCTCGGCCGGTAAGATTG 60.888 63.158 27.83 6.63 39.62 2.67
2080 2362 1.143183 GCTCGGCCGGTAAGATTGA 59.857 57.895 27.83 0.26 0.00 2.57
2081 2363 0.876342 GCTCGGCCGGTAAGATTGAG 60.876 60.000 27.83 13.02 0.00 3.02
2082 2364 0.744874 CTCGGCCGGTAAGATTGAGA 59.255 55.000 27.83 0.00 0.00 3.27
2083 2365 1.136305 CTCGGCCGGTAAGATTGAGAA 59.864 52.381 27.83 0.00 0.00 2.87
2084 2366 1.760613 TCGGCCGGTAAGATTGAGAAT 59.239 47.619 27.83 0.00 0.00 2.40
2085 2367 2.169769 TCGGCCGGTAAGATTGAGAATT 59.830 45.455 27.83 0.00 0.00 2.17
2086 2368 2.544267 CGGCCGGTAAGATTGAGAATTC 59.456 50.000 20.10 0.00 0.00 2.17
2087 2369 3.741388 CGGCCGGTAAGATTGAGAATTCT 60.741 47.826 20.10 7.95 0.00 2.40
2088 2370 3.561725 GGCCGGTAAGATTGAGAATTCTG 59.438 47.826 14.00 0.00 0.00 3.02
2089 2371 4.442706 GCCGGTAAGATTGAGAATTCTGA 58.557 43.478 14.00 0.14 0.00 3.27
2090 2372 5.059833 GCCGGTAAGATTGAGAATTCTGAT 58.940 41.667 14.00 6.66 0.00 2.90
2091 2373 5.529060 GCCGGTAAGATTGAGAATTCTGATT 59.471 40.000 14.00 0.04 0.00 2.57
2092 2374 6.038714 GCCGGTAAGATTGAGAATTCTGATTT 59.961 38.462 14.00 2.69 0.00 2.17
2093 2375 7.415653 GCCGGTAAGATTGAGAATTCTGATTTT 60.416 37.037 14.00 10.33 0.00 1.82
2094 2376 8.462016 CCGGTAAGATTGAGAATTCTGATTTTT 58.538 33.333 14.00 5.35 0.00 1.94
2118 2400 8.804688 TTTAATTCCTGTAAATCCAAAACACG 57.195 30.769 0.00 0.00 0.00 4.49
2119 2401 3.907894 TCCTGTAAATCCAAAACACGC 57.092 42.857 0.00 0.00 0.00 5.34
2120 2402 2.554893 TCCTGTAAATCCAAAACACGCC 59.445 45.455 0.00 0.00 0.00 5.68
2121 2403 2.556622 CCTGTAAATCCAAAACACGCCT 59.443 45.455 0.00 0.00 0.00 5.52
2122 2404 3.564511 CTGTAAATCCAAAACACGCCTG 58.435 45.455 0.00 0.00 0.00 4.85
2123 2405 3.215151 TGTAAATCCAAAACACGCCTGA 58.785 40.909 0.00 0.00 0.00 3.86
2124 2406 3.632604 TGTAAATCCAAAACACGCCTGAA 59.367 39.130 0.00 0.00 0.00 3.02
2125 2407 3.810310 AAATCCAAAACACGCCTGAAA 57.190 38.095 0.00 0.00 0.00 2.69
2126 2408 3.810310 AATCCAAAACACGCCTGAAAA 57.190 38.095 0.00 0.00 0.00 2.29
2127 2409 4.335400 AATCCAAAACACGCCTGAAAAT 57.665 36.364 0.00 0.00 0.00 1.82
2128 2410 3.810310 TCCAAAACACGCCTGAAAATT 57.190 38.095 0.00 0.00 0.00 1.82
2129 2411 4.920640 TCCAAAACACGCCTGAAAATTA 57.079 36.364 0.00 0.00 0.00 1.40
2130 2412 5.461032 TCCAAAACACGCCTGAAAATTAT 57.539 34.783 0.00 0.00 0.00 1.28
2131 2413 5.226396 TCCAAAACACGCCTGAAAATTATG 58.774 37.500 0.00 0.00 0.00 1.90
2132 2414 5.010112 TCCAAAACACGCCTGAAAATTATGA 59.990 36.000 0.00 0.00 0.00 2.15
2133 2415 5.345741 CCAAAACACGCCTGAAAATTATGAG 59.654 40.000 0.00 0.00 0.00 2.90
2134 2416 5.957842 AAACACGCCTGAAAATTATGAGA 57.042 34.783 0.00 0.00 0.00 3.27
2135 2417 4.946784 ACACGCCTGAAAATTATGAGAC 57.053 40.909 0.00 0.00 0.00 3.36
2136 2418 4.579869 ACACGCCTGAAAATTATGAGACT 58.420 39.130 0.00 0.00 0.00 3.24
2137 2419 5.003804 ACACGCCTGAAAATTATGAGACTT 58.996 37.500 0.00 0.00 0.00 3.01
2138 2420 5.106555 ACACGCCTGAAAATTATGAGACTTG 60.107 40.000 0.00 0.00 0.00 3.16
2139 2421 4.396166 ACGCCTGAAAATTATGAGACTTGG 59.604 41.667 0.00 0.00 0.00 3.61
2140 2422 4.676546 GCCTGAAAATTATGAGACTTGGC 58.323 43.478 0.00 0.00 0.00 4.52
2141 2423 4.158394 GCCTGAAAATTATGAGACTTGGCA 59.842 41.667 0.00 0.00 35.94 4.92
2142 2424 5.163478 GCCTGAAAATTATGAGACTTGGCAT 60.163 40.000 0.00 0.00 35.94 4.40
2143 2425 6.270815 CCTGAAAATTATGAGACTTGGCATG 58.729 40.000 0.00 0.00 0.00 4.06
2144 2426 6.211587 TGAAAATTATGAGACTTGGCATGG 57.788 37.500 5.31 0.00 0.00 3.66
2145 2427 5.716228 TGAAAATTATGAGACTTGGCATGGT 59.284 36.000 5.31 0.00 0.00 3.55
2146 2428 5.587388 AAATTATGAGACTTGGCATGGTG 57.413 39.130 5.31 0.00 0.00 4.17
2147 2429 2.042686 TATGAGACTTGGCATGGTGC 57.957 50.000 5.31 0.00 44.08 5.01
2165 2447 2.656049 CCATGACATGGCACCAACA 58.344 52.632 21.35 0.00 44.70 3.33
2166 2448 1.187974 CCATGACATGGCACCAACAT 58.812 50.000 21.35 0.00 44.70 2.71
2170 2452 4.902308 CATGGCACCAACATGCTG 57.098 55.556 0.00 0.00 45.38 4.41
2171 2453 1.216977 CATGGCACCAACATGCTGG 59.783 57.895 13.73 13.73 45.38 4.85
2172 2454 2.652095 ATGGCACCAACATGCTGGC 61.652 57.895 15.21 7.38 45.38 4.85
2173 2455 3.304721 GGCACCAACATGCTGGCA 61.305 61.111 15.21 0.00 45.38 4.92
2174 2456 2.652095 GGCACCAACATGCTGGCAT 61.652 57.895 15.21 1.86 45.38 4.40
2175 2457 1.321805 GGCACCAACATGCTGGCATA 61.322 55.000 15.21 0.00 45.38 3.14
2176 2458 0.531657 GCACCAACATGCTGGCATAA 59.468 50.000 15.21 0.00 42.62 1.90
2177 2459 1.137479 GCACCAACATGCTGGCATAAT 59.863 47.619 15.21 0.00 42.62 1.28
2178 2460 2.419021 GCACCAACATGCTGGCATAATT 60.419 45.455 15.21 3.49 42.62 1.40
2179 2461 3.864243 CACCAACATGCTGGCATAATTT 58.136 40.909 15.21 0.00 40.45 1.82
2180 2462 4.255301 CACCAACATGCTGGCATAATTTT 58.745 39.130 15.21 0.00 40.45 1.82
2181 2463 4.696402 CACCAACATGCTGGCATAATTTTT 59.304 37.500 15.21 0.00 40.45 1.94
2198 2480 1.414158 TTTTTGGCCGAATTGGGACA 58.586 45.000 11.61 11.61 45.62 4.02
2200 2482 4.413928 TGGCCGAATTGGGACAAG 57.586 55.556 13.42 0.00 43.87 3.16
2201 2483 1.976474 TGGCCGAATTGGGACAAGC 60.976 57.895 13.42 0.00 43.87 4.01
2202 2484 2.424842 TGGCCGAATTGGGACAAGCT 62.425 55.000 13.42 0.00 43.87 3.74
2203 2485 3.894560 TGGCCGAATTGGGACAAGCTT 62.895 52.381 13.42 0.00 43.87 3.74
2211 2493 2.738587 TGGGACAAGCTTTGGTGTAA 57.261 45.000 0.00 0.00 31.92 2.41
2212 2494 2.582052 TGGGACAAGCTTTGGTGTAAG 58.418 47.619 0.00 0.00 31.92 2.34
2220 2502 2.666026 GCTTTGGTGTAAGCTTCTTGC 58.334 47.619 0.00 0.00 45.50 4.01
2221 2503 2.034558 GCTTTGGTGTAAGCTTCTTGCA 59.965 45.455 0.00 0.00 45.50 4.08
2222 2504 3.490761 GCTTTGGTGTAAGCTTCTTGCAA 60.491 43.478 0.00 0.00 45.50 4.08
2223 2505 4.681744 CTTTGGTGTAAGCTTCTTGCAAA 58.318 39.130 0.00 0.00 45.94 3.68
2224 2506 4.935352 TTGGTGTAAGCTTCTTGCAAAT 57.065 36.364 0.00 0.00 45.94 2.32
2225 2507 4.503741 TGGTGTAAGCTTCTTGCAAATC 57.496 40.909 0.00 0.00 45.94 2.17
2226 2508 3.888323 TGGTGTAAGCTTCTTGCAAATCA 59.112 39.130 0.00 0.00 45.94 2.57
2227 2509 4.022935 TGGTGTAAGCTTCTTGCAAATCAG 60.023 41.667 0.00 0.00 45.94 2.90
2228 2510 4.216257 GGTGTAAGCTTCTTGCAAATCAGA 59.784 41.667 0.00 0.00 45.94 3.27
2229 2511 5.388944 GTGTAAGCTTCTTGCAAATCAGAG 58.611 41.667 0.00 0.00 45.94 3.35
2230 2512 3.572604 AAGCTTCTTGCAAATCAGAGC 57.427 42.857 0.00 5.89 45.94 4.09
2231 2513 2.792878 AGCTTCTTGCAAATCAGAGCT 58.207 42.857 0.00 8.08 45.94 4.09
2232 2514 3.155501 AGCTTCTTGCAAATCAGAGCTT 58.844 40.909 0.00 0.00 45.94 3.74
2233 2515 3.190953 AGCTTCTTGCAAATCAGAGCTTC 59.809 43.478 0.00 0.00 45.94 3.86
2234 2516 3.672781 GCTTCTTGCAAATCAGAGCTTCC 60.673 47.826 0.00 0.00 42.31 3.46
2235 2517 2.440409 TCTTGCAAATCAGAGCTTCCC 58.560 47.619 0.00 0.00 0.00 3.97
2236 2518 2.040813 TCTTGCAAATCAGAGCTTCCCT 59.959 45.455 0.00 0.00 0.00 4.20
2237 2519 2.119801 TGCAAATCAGAGCTTCCCTC 57.880 50.000 0.00 0.00 41.07 4.30
2248 2530 2.616842 GAGCTTCCCTCTAGAAGACTCG 59.383 54.545 5.50 0.00 45.08 4.18
2249 2531 2.025699 AGCTTCCCTCTAGAAGACTCGT 60.026 50.000 5.50 0.00 45.08 4.18
2250 2532 2.098443 GCTTCCCTCTAGAAGACTCGTG 59.902 54.545 5.50 0.00 45.08 4.35
2251 2533 2.421751 TCCCTCTAGAAGACTCGTGG 57.578 55.000 0.00 0.00 0.00 4.94
2252 2534 1.634459 TCCCTCTAGAAGACTCGTGGT 59.366 52.381 0.00 0.00 0.00 4.16
2253 2535 2.041350 TCCCTCTAGAAGACTCGTGGTT 59.959 50.000 0.00 0.00 0.00 3.67
2254 2536 2.424246 CCCTCTAGAAGACTCGTGGTTC 59.576 54.545 0.00 0.00 0.00 3.62
2255 2537 2.424246 CCTCTAGAAGACTCGTGGTTCC 59.576 54.545 0.00 0.00 0.00 3.62
2256 2538 2.082231 TCTAGAAGACTCGTGGTTCCG 58.918 52.381 0.00 0.00 0.00 4.30
2257 2539 2.082231 CTAGAAGACTCGTGGTTCCGA 58.918 52.381 0.00 0.00 35.22 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 3.901797 GACTGGGTCAACTGGGCCG 62.902 68.421 0.00 0.00 32.09 6.13
195 197 6.394640 TGTGGGTCCCCCTTATTTTAGATTAT 59.605 38.462 5.13 0.00 45.70 1.28
293 295 3.857157 TTAGGCTACCCCTGCTAATTG 57.143 47.619 0.00 0.00 45.91 2.32
1292 1565 0.693049 CTGTGAAACCCTAGCCCACT 59.307 55.000 0.00 0.00 34.36 4.00
1790 2072 6.463995 AAGCTAAAATGTTCAAAGTGTGGA 57.536 33.333 0.00 0.00 0.00 4.02
1844 2126 7.441836 ACCTGGTCCAAATTCAAATTTAACTC 58.558 34.615 0.00 0.26 36.52 3.01
1960 2242 0.740149 TGAGCAACTTTGGTGCACTG 59.260 50.000 17.98 6.99 39.30 3.66
1961 2243 1.473258 TTGAGCAACTTTGGTGCACT 58.527 45.000 17.98 0.00 39.30 4.40
1962 2244 2.292103 TTTGAGCAACTTTGGTGCAC 57.708 45.000 8.80 8.80 39.30 4.57
1963 2245 3.325293 TTTTTGAGCAACTTTGGTGCA 57.675 38.095 10.30 0.00 39.30 4.57
1980 2262 3.552684 CCAAGGACACACATGCGATTTTT 60.553 43.478 0.00 0.00 0.00 1.94
1981 2263 2.030007 CCAAGGACACACATGCGATTTT 60.030 45.455 0.00 0.00 0.00 1.82
1982 2264 1.541147 CCAAGGACACACATGCGATTT 59.459 47.619 0.00 0.00 0.00 2.17
1983 2265 1.167851 CCAAGGACACACATGCGATT 58.832 50.000 0.00 0.00 0.00 3.34
1984 2266 0.677731 CCCAAGGACACACATGCGAT 60.678 55.000 0.00 0.00 0.00 4.58
1985 2267 1.302431 CCCAAGGACACACATGCGA 60.302 57.895 0.00 0.00 0.00 5.10
1986 2268 1.600636 ACCCAAGGACACACATGCG 60.601 57.895 0.00 0.00 0.00 4.73
1987 2269 0.537143 TCACCCAAGGACACACATGC 60.537 55.000 0.00 0.00 0.00 4.06
1988 2270 1.979855 TTCACCCAAGGACACACATG 58.020 50.000 0.00 0.00 0.00 3.21
1989 2271 2.978156 ATTCACCCAAGGACACACAT 57.022 45.000 0.00 0.00 0.00 3.21
1990 2272 2.746279 AATTCACCCAAGGACACACA 57.254 45.000 0.00 0.00 0.00 3.72
1991 2273 3.222603 AGAAATTCACCCAAGGACACAC 58.777 45.455 0.00 0.00 0.00 3.82
1992 2274 3.593442 AGAAATTCACCCAAGGACACA 57.407 42.857 0.00 0.00 0.00 3.72
1993 2275 4.010349 CCTAGAAATTCACCCAAGGACAC 58.990 47.826 0.00 0.00 0.00 3.67
1994 2276 3.655777 ACCTAGAAATTCACCCAAGGACA 59.344 43.478 0.00 0.00 0.00 4.02
1995 2277 4.019231 AGACCTAGAAATTCACCCAAGGAC 60.019 45.833 0.00 0.00 0.00 3.85
1996 2278 4.175962 AGACCTAGAAATTCACCCAAGGA 58.824 43.478 0.00 0.00 0.00 3.36
1997 2279 4.019321 TGAGACCTAGAAATTCACCCAAGG 60.019 45.833 0.00 0.00 0.00 3.61
1998 2280 5.165961 TGAGACCTAGAAATTCACCCAAG 57.834 43.478 0.00 0.00 0.00 3.61
1999 2281 5.500234 CATGAGACCTAGAAATTCACCCAA 58.500 41.667 0.00 0.00 0.00 4.12
2000 2282 4.626287 GCATGAGACCTAGAAATTCACCCA 60.626 45.833 0.00 0.00 0.00 4.51
2001 2283 3.879892 GCATGAGACCTAGAAATTCACCC 59.120 47.826 0.00 0.00 0.00 4.61
2002 2284 4.517285 TGCATGAGACCTAGAAATTCACC 58.483 43.478 0.00 0.00 0.00 4.02
2003 2285 5.877012 TCTTGCATGAGACCTAGAAATTCAC 59.123 40.000 0.00 0.00 0.00 3.18
2004 2286 6.053632 TCTTGCATGAGACCTAGAAATTCA 57.946 37.500 0.00 0.00 0.00 2.57
2005 2287 6.344500 TCTCTTGCATGAGACCTAGAAATTC 58.656 40.000 24.24 0.00 38.08 2.17
2006 2288 6.305272 TCTCTTGCATGAGACCTAGAAATT 57.695 37.500 24.24 0.00 38.08 1.82
2007 2289 5.946942 TCTCTTGCATGAGACCTAGAAAT 57.053 39.130 24.24 0.00 38.08 2.17
2008 2290 5.946942 ATCTCTTGCATGAGACCTAGAAA 57.053 39.130 28.75 9.54 44.64 2.52
2009 2291 5.396101 CCAATCTCTTGCATGAGACCTAGAA 60.396 44.000 28.75 10.19 44.64 2.10
2010 2292 4.100653 CCAATCTCTTGCATGAGACCTAGA 59.899 45.833 28.75 11.04 44.64 2.43
2011 2293 4.100653 TCCAATCTCTTGCATGAGACCTAG 59.899 45.833 28.75 19.09 44.64 3.02
2012 2294 4.033009 TCCAATCTCTTGCATGAGACCTA 58.967 43.478 28.75 15.07 44.64 3.08
2013 2295 2.842496 TCCAATCTCTTGCATGAGACCT 59.158 45.455 28.75 18.48 44.64 3.85
2014 2296 3.204526 CTCCAATCTCTTGCATGAGACC 58.795 50.000 28.75 0.00 44.64 3.85
2015 2297 3.622163 CACTCCAATCTCTTGCATGAGAC 59.378 47.826 28.75 0.00 44.64 3.36
2016 2298 3.516700 TCACTCCAATCTCTTGCATGAGA 59.483 43.478 28.44 28.44 45.71 3.27
2017 2299 3.870274 TCACTCCAATCTCTTGCATGAG 58.130 45.455 20.70 20.70 35.52 2.90
2018 2300 3.986996 TCACTCCAATCTCTTGCATGA 57.013 42.857 0.00 1.92 0.00 3.07
2019 2301 5.578005 ATTTCACTCCAATCTCTTGCATG 57.422 39.130 0.00 0.00 0.00 4.06
2020 2302 5.713389 TGAATTTCACTCCAATCTCTTGCAT 59.287 36.000 0.00 0.00 0.00 3.96
2021 2303 5.072055 TGAATTTCACTCCAATCTCTTGCA 58.928 37.500 0.00 0.00 0.00 4.08
2022 2304 5.633830 TGAATTTCACTCCAATCTCTTGC 57.366 39.130 0.00 0.00 0.00 4.01
2023 2305 7.428020 TGTTTGAATTTCACTCCAATCTCTTG 58.572 34.615 0.00 0.00 0.00 3.02
2024 2306 7.587037 TGTTTGAATTTCACTCCAATCTCTT 57.413 32.000 0.00 0.00 0.00 2.85
2025 2307 7.668886 AGATGTTTGAATTTCACTCCAATCTCT 59.331 33.333 0.00 0.00 0.00 3.10
2026 2308 7.754027 CAGATGTTTGAATTTCACTCCAATCTC 59.246 37.037 0.00 0.00 0.00 2.75
2027 2309 7.309621 CCAGATGTTTGAATTTCACTCCAATCT 60.310 37.037 0.00 1.91 0.00 2.40
2028 2310 6.810182 CCAGATGTTTGAATTTCACTCCAATC 59.190 38.462 0.00 0.00 0.00 2.67
2029 2311 6.295462 CCCAGATGTTTGAATTTCACTCCAAT 60.295 38.462 0.00 0.00 0.00 3.16
2030 2312 5.010922 CCCAGATGTTTGAATTTCACTCCAA 59.989 40.000 0.00 0.00 0.00 3.53
2031 2313 4.523943 CCCAGATGTTTGAATTTCACTCCA 59.476 41.667 0.00 0.00 0.00 3.86
2032 2314 4.619160 GCCCAGATGTTTGAATTTCACTCC 60.619 45.833 0.00 0.00 0.00 3.85
2033 2315 4.488879 GCCCAGATGTTTGAATTTCACTC 58.511 43.478 0.00 0.00 0.00 3.51
2034 2316 3.057315 CGCCCAGATGTTTGAATTTCACT 60.057 43.478 0.00 0.00 0.00 3.41
2035 2317 3.244976 CGCCCAGATGTTTGAATTTCAC 58.755 45.455 0.00 0.00 0.00 3.18
2036 2318 2.890311 ACGCCCAGATGTTTGAATTTCA 59.110 40.909 0.00 0.00 0.00 2.69
2037 2319 3.501950 GACGCCCAGATGTTTGAATTTC 58.498 45.455 0.00 0.00 0.00 2.17
2038 2320 2.095263 CGACGCCCAGATGTTTGAATTT 60.095 45.455 0.00 0.00 0.00 1.82
2039 2321 1.468520 CGACGCCCAGATGTTTGAATT 59.531 47.619 0.00 0.00 0.00 2.17
2040 2322 1.086696 CGACGCCCAGATGTTTGAAT 58.913 50.000 0.00 0.00 0.00 2.57
2041 2323 0.250124 ACGACGCCCAGATGTTTGAA 60.250 50.000 0.00 0.00 0.00 2.69
2042 2324 0.948623 CACGACGCCCAGATGTTTGA 60.949 55.000 0.00 0.00 0.00 2.69
2043 2325 1.497278 CACGACGCCCAGATGTTTG 59.503 57.895 0.00 0.00 0.00 2.93
2044 2326 1.671054 CCACGACGCCCAGATGTTT 60.671 57.895 0.00 0.00 0.00 2.83
2045 2327 2.047274 CCACGACGCCCAGATGTT 60.047 61.111 0.00 0.00 0.00 2.71
2046 2328 4.760047 GCCACGACGCCCAGATGT 62.760 66.667 0.00 0.00 0.00 3.06
2047 2329 4.457496 AGCCACGACGCCCAGATG 62.457 66.667 0.00 0.00 0.00 2.90
2048 2330 4.148825 GAGCCACGACGCCCAGAT 62.149 66.667 0.00 0.00 0.00 2.90
2061 2343 1.887707 CAATCTTACCGGCCGAGCC 60.888 63.158 30.73 4.96 46.75 4.70
2062 2344 0.876342 CTCAATCTTACCGGCCGAGC 60.876 60.000 30.73 0.00 0.00 5.03
2063 2345 0.744874 TCTCAATCTTACCGGCCGAG 59.255 55.000 30.73 19.69 0.00 4.63
2064 2346 1.187974 TTCTCAATCTTACCGGCCGA 58.812 50.000 30.73 6.25 0.00 5.54
2065 2347 2.240493 ATTCTCAATCTTACCGGCCG 57.760 50.000 21.04 21.04 0.00 6.13
2066 2348 3.561725 CAGAATTCTCAATCTTACCGGCC 59.438 47.826 4.57 0.00 0.00 6.13
2067 2349 4.442706 TCAGAATTCTCAATCTTACCGGC 58.557 43.478 4.57 0.00 0.00 6.13
2068 2350 7.559590 AAATCAGAATTCTCAATCTTACCGG 57.440 36.000 4.57 0.00 0.00 5.28
2092 2374 9.250624 CGTGTTTTGGATTTACAGGAATTAAAA 57.749 29.630 0.00 0.00 31.29 1.52
2093 2375 7.382759 GCGTGTTTTGGATTTACAGGAATTAAA 59.617 33.333 0.00 0.00 31.29 1.52
2094 2376 6.864165 GCGTGTTTTGGATTTACAGGAATTAA 59.136 34.615 0.00 0.00 31.29 1.40
2095 2377 6.383415 GCGTGTTTTGGATTTACAGGAATTA 58.617 36.000 0.00 0.00 31.29 1.40
2096 2378 5.227152 GCGTGTTTTGGATTTACAGGAATT 58.773 37.500 0.00 0.00 31.29 2.17
2097 2379 4.321675 GGCGTGTTTTGGATTTACAGGAAT 60.322 41.667 0.00 0.00 31.29 3.01
2098 2380 3.004944 GGCGTGTTTTGGATTTACAGGAA 59.995 43.478 0.00 0.00 31.29 3.36
2099 2381 2.554893 GGCGTGTTTTGGATTTACAGGA 59.445 45.455 0.00 0.00 31.29 3.86
2100 2382 2.556622 AGGCGTGTTTTGGATTTACAGG 59.443 45.455 0.00 0.00 0.00 4.00
2101 2383 3.252215 TCAGGCGTGTTTTGGATTTACAG 59.748 43.478 6.26 0.00 0.00 2.74
2102 2384 3.215151 TCAGGCGTGTTTTGGATTTACA 58.785 40.909 6.26 0.00 0.00 2.41
2103 2385 3.907894 TCAGGCGTGTTTTGGATTTAC 57.092 42.857 6.26 0.00 0.00 2.01
2104 2386 4.920640 TTTCAGGCGTGTTTTGGATTTA 57.079 36.364 6.26 0.00 0.00 1.40
2105 2387 3.810310 TTTCAGGCGTGTTTTGGATTT 57.190 38.095 6.26 0.00 0.00 2.17
2106 2388 3.810310 TTTTCAGGCGTGTTTTGGATT 57.190 38.095 6.26 0.00 0.00 3.01
2107 2389 4.335400 AATTTTCAGGCGTGTTTTGGAT 57.665 36.364 6.26 0.00 0.00 3.41
2108 2390 3.810310 AATTTTCAGGCGTGTTTTGGA 57.190 38.095 6.26 0.00 0.00 3.53
2109 2391 5.226396 TCATAATTTTCAGGCGTGTTTTGG 58.774 37.500 6.26 0.00 0.00 3.28
2110 2392 6.088085 GTCTCATAATTTTCAGGCGTGTTTTG 59.912 38.462 6.26 0.00 0.00 2.44
2111 2393 6.016276 AGTCTCATAATTTTCAGGCGTGTTTT 60.016 34.615 6.26 0.00 0.00 2.43
2112 2394 5.473504 AGTCTCATAATTTTCAGGCGTGTTT 59.526 36.000 6.26 0.00 0.00 2.83
2113 2395 5.003804 AGTCTCATAATTTTCAGGCGTGTT 58.996 37.500 6.26 0.00 0.00 3.32
2114 2396 4.579869 AGTCTCATAATTTTCAGGCGTGT 58.420 39.130 6.26 0.00 0.00 4.49
2115 2397 5.327091 CAAGTCTCATAATTTTCAGGCGTG 58.673 41.667 0.00 0.00 0.00 5.34
2116 2398 4.396166 CCAAGTCTCATAATTTTCAGGCGT 59.604 41.667 0.00 0.00 0.00 5.68
2117 2399 4.731773 GCCAAGTCTCATAATTTTCAGGCG 60.732 45.833 0.00 0.00 0.00 5.52
2118 2400 4.158394 TGCCAAGTCTCATAATTTTCAGGC 59.842 41.667 0.00 0.00 37.75 4.85
2119 2401 5.902613 TGCCAAGTCTCATAATTTTCAGG 57.097 39.130 0.00 0.00 0.00 3.86
2120 2402 6.127535 ACCATGCCAAGTCTCATAATTTTCAG 60.128 38.462 0.00 0.00 0.00 3.02
2121 2403 5.716228 ACCATGCCAAGTCTCATAATTTTCA 59.284 36.000 0.00 0.00 0.00 2.69
2122 2404 6.038356 CACCATGCCAAGTCTCATAATTTTC 58.962 40.000 0.00 0.00 0.00 2.29
2123 2405 5.625197 GCACCATGCCAAGTCTCATAATTTT 60.625 40.000 0.00 0.00 37.42 1.82
2124 2406 4.142093 GCACCATGCCAAGTCTCATAATTT 60.142 41.667 0.00 0.00 37.42 1.82
2125 2407 3.382546 GCACCATGCCAAGTCTCATAATT 59.617 43.478 0.00 0.00 37.42 1.40
2126 2408 2.954318 GCACCATGCCAAGTCTCATAAT 59.046 45.455 0.00 0.00 37.42 1.28
2127 2409 2.368439 GCACCATGCCAAGTCTCATAA 58.632 47.619 0.00 0.00 37.42 1.90
2128 2410 2.042686 GCACCATGCCAAGTCTCATA 57.957 50.000 0.00 0.00 37.42 2.15
2129 2411 2.877975 GCACCATGCCAAGTCTCAT 58.122 52.632 0.00 0.00 37.42 2.90
2130 2412 4.402851 GCACCATGCCAAGTCTCA 57.597 55.556 0.00 0.00 37.42 3.27
2148 2430 1.737696 GCATGTTGGTGCCATGTCATG 60.738 52.381 18.13 18.13 41.38 3.07
2149 2431 0.533491 GCATGTTGGTGCCATGTCAT 59.467 50.000 0.00 0.00 41.38 3.06
2150 2432 0.540133 AGCATGTTGGTGCCATGTCA 60.540 50.000 0.00 0.00 46.19 3.58
2151 2433 0.108992 CAGCATGTTGGTGCCATGTC 60.109 55.000 0.85 0.00 46.19 3.06
2152 2434 1.537814 CCAGCATGTTGGTGCCATGT 61.538 55.000 19.77 0.00 46.19 3.21
2153 2435 1.216977 CCAGCATGTTGGTGCCATG 59.783 57.895 19.77 0.00 46.19 3.66
2154 2436 2.652095 GCCAGCATGTTGGTGCCAT 61.652 57.895 27.01 0.00 46.19 4.40
2155 2437 3.304721 GCCAGCATGTTGGTGCCA 61.305 61.111 27.01 0.00 46.19 4.92
2156 2438 1.321805 TATGCCAGCATGTTGGTGCC 61.322 55.000 27.01 13.08 46.19 5.01
2157 2439 0.531657 TTATGCCAGCATGTTGGTGC 59.468 50.000 27.01 15.59 43.92 5.01
2158 2440 3.530265 AATTATGCCAGCATGTTGGTG 57.470 42.857 27.01 5.99 44.79 4.17
2159 2441 4.556592 AAAATTATGCCAGCATGTTGGT 57.443 36.364 27.01 12.92 40.49 3.67
2179 2461 1.414158 TGTCCCAATTCGGCCAAAAA 58.586 45.000 2.24 0.00 0.00 1.94
2180 2462 1.342819 CTTGTCCCAATTCGGCCAAAA 59.657 47.619 2.24 0.00 0.00 2.44
2181 2463 0.965439 CTTGTCCCAATTCGGCCAAA 59.035 50.000 2.24 0.00 0.00 3.28
2182 2464 1.531739 GCTTGTCCCAATTCGGCCAA 61.532 55.000 2.24 0.00 0.00 4.52
2183 2465 1.976474 GCTTGTCCCAATTCGGCCA 60.976 57.895 2.24 0.00 0.00 5.36
2184 2466 1.250840 AAGCTTGTCCCAATTCGGCC 61.251 55.000 0.00 0.00 0.00 6.13
2185 2467 0.603065 AAAGCTTGTCCCAATTCGGC 59.397 50.000 0.00 0.00 0.00 5.54
2186 2468 1.067635 CCAAAGCTTGTCCCAATTCGG 60.068 52.381 0.00 0.00 0.00 4.30
2187 2469 1.613437 ACCAAAGCTTGTCCCAATTCG 59.387 47.619 0.00 0.00 0.00 3.34
2188 2470 2.365293 ACACCAAAGCTTGTCCCAATTC 59.635 45.455 0.00 0.00 0.00 2.17
2189 2471 2.397597 ACACCAAAGCTTGTCCCAATT 58.602 42.857 0.00 0.00 0.00 2.32
2190 2472 2.086610 ACACCAAAGCTTGTCCCAAT 57.913 45.000 0.00 0.00 0.00 3.16
2191 2473 2.738587 TACACCAAAGCTTGTCCCAA 57.261 45.000 0.00 0.00 0.00 4.12
2192 2474 2.582052 CTTACACCAAAGCTTGTCCCA 58.418 47.619 0.00 0.00 0.00 4.37
2193 2475 1.269723 GCTTACACCAAAGCTTGTCCC 59.730 52.381 0.00 0.00 46.74 4.46
2194 2476 2.706555 GCTTACACCAAAGCTTGTCC 57.293 50.000 0.00 0.00 46.74 4.02
2201 2483 3.988379 TGCAAGAAGCTTACACCAAAG 57.012 42.857 0.00 0.00 45.94 2.77
2202 2484 4.727507 TTTGCAAGAAGCTTACACCAAA 57.272 36.364 0.00 4.92 45.94 3.28
2203 2485 4.340666 TGATTTGCAAGAAGCTTACACCAA 59.659 37.500 0.00 0.00 45.94 3.67
2204 2486 3.888323 TGATTTGCAAGAAGCTTACACCA 59.112 39.130 0.00 0.00 45.94 4.17
2205 2487 4.216257 TCTGATTTGCAAGAAGCTTACACC 59.784 41.667 0.00 0.00 45.94 4.16
2206 2488 5.362556 TCTGATTTGCAAGAAGCTTACAC 57.637 39.130 0.00 0.00 45.94 2.90
2207 2489 4.083110 GCTCTGATTTGCAAGAAGCTTACA 60.083 41.667 0.00 0.00 45.94 2.41
2208 2490 4.155644 AGCTCTGATTTGCAAGAAGCTTAC 59.844 41.667 0.00 0.00 45.94 2.34
2209 2491 4.330250 AGCTCTGATTTGCAAGAAGCTTA 58.670 39.130 0.00 0.00 45.94 3.09
2210 2492 3.155501 AGCTCTGATTTGCAAGAAGCTT 58.844 40.909 0.00 0.00 45.94 3.74
2211 2493 2.792878 AGCTCTGATTTGCAAGAAGCT 58.207 42.857 13.80 13.80 45.94 3.74
2212 2494 3.500014 GAAGCTCTGATTTGCAAGAAGC 58.500 45.455 0.00 5.93 45.96 3.86
2213 2495 3.119566 GGGAAGCTCTGATTTGCAAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
2214 2496 2.821969 GGGAAGCTCTGATTTGCAAGAA 59.178 45.455 0.00 0.00 0.00 2.52
2215 2497 2.040813 AGGGAAGCTCTGATTTGCAAGA 59.959 45.455 0.00 0.00 0.00 3.02
2216 2498 2.422832 GAGGGAAGCTCTGATTTGCAAG 59.577 50.000 0.00 0.00 0.00 4.01
2217 2499 2.040813 AGAGGGAAGCTCTGATTTGCAA 59.959 45.455 0.00 0.00 0.00 4.08
2218 2500 1.632409 AGAGGGAAGCTCTGATTTGCA 59.368 47.619 0.00 0.00 0.00 4.08
2219 2501 2.416680 AGAGGGAAGCTCTGATTTGC 57.583 50.000 0.00 0.00 0.00 3.68
2220 2502 5.128499 TCTTCTAGAGGGAAGCTCTGATTTG 59.872 44.000 1.52 0.00 41.55 2.32
2221 2503 5.128663 GTCTTCTAGAGGGAAGCTCTGATTT 59.871 44.000 1.52 0.00 41.55 2.17
2222 2504 4.649218 GTCTTCTAGAGGGAAGCTCTGATT 59.351 45.833 1.52 0.00 41.55 2.57
2223 2505 4.079212 AGTCTTCTAGAGGGAAGCTCTGAT 60.079 45.833 1.52 0.00 41.55 2.90
2224 2506 3.268334 AGTCTTCTAGAGGGAAGCTCTGA 59.732 47.826 1.52 0.00 41.55 3.27
2225 2507 3.631250 AGTCTTCTAGAGGGAAGCTCTG 58.369 50.000 1.52 0.00 41.55 3.35
2226 2508 3.684413 CGAGTCTTCTAGAGGGAAGCTCT 60.684 52.174 1.52 0.00 41.55 4.09
2227 2509 2.616842 CGAGTCTTCTAGAGGGAAGCTC 59.383 54.545 1.52 13.34 41.55 4.09
2228 2510 2.025699 ACGAGTCTTCTAGAGGGAAGCT 60.026 50.000 1.52 0.00 41.55 3.74
2229 2511 2.098443 CACGAGTCTTCTAGAGGGAAGC 59.902 54.545 1.52 0.00 41.55 3.86
2230 2512 2.685897 CCACGAGTCTTCTAGAGGGAAG 59.314 54.545 1.52 0.00 42.72 3.46
2231 2513 2.041350 ACCACGAGTCTTCTAGAGGGAA 59.959 50.000 1.52 0.00 33.14 3.97
2232 2514 1.634459 ACCACGAGTCTTCTAGAGGGA 59.366 52.381 1.52 0.00 33.14 4.20
2233 2515 2.131776 ACCACGAGTCTTCTAGAGGG 57.868 55.000 1.52 0.00 33.14 4.30
2234 2516 2.424246 GGAACCACGAGTCTTCTAGAGG 59.576 54.545 0.00 0.00 34.47 3.69
2235 2517 2.096174 CGGAACCACGAGTCTTCTAGAG 59.904 54.545 0.00 0.00 35.47 2.43
2236 2518 2.082231 CGGAACCACGAGTCTTCTAGA 58.918 52.381 0.00 0.00 35.47 2.43
2237 2519 2.082231 TCGGAACCACGAGTCTTCTAG 58.918 52.381 0.00 0.00 38.06 2.43
2238 2520 2.189594 TCGGAACCACGAGTCTTCTA 57.810 50.000 0.00 0.00 38.06 2.10
2239 2521 3.031916 TCGGAACCACGAGTCTTCT 57.968 52.632 0.00 0.00 38.06 2.85
2246 2528 2.437449 TCCCTCTCGGAACCACGA 59.563 61.111 0.00 0.00 37.88 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.