Multiple sequence alignment - TraesCS7A01G332200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G332200 chr7A 100.000 2270 0 0 1 2270 485609822 485612091 0.000000e+00 4193.0
1 TraesCS7A01G332200 chr7A 83.168 101 17 0 2082 2182 649479421 649479521 2.400000e-15 93.5
2 TraesCS7A01G332200 chr7D 95.559 698 23 5 767 1461 436949874 436949182 0.000000e+00 1110.0
3 TraesCS7A01G332200 chr7D 95.375 627 12 9 1470 2084 436949125 436948504 0.000000e+00 981.0
4 TraesCS7A01G332200 chr7D 97.578 289 6 1 192 480 436950510 436950223 5.630000e-136 494.0
5 TraesCS7A01G332200 chr7D 89.527 296 19 6 479 763 436950131 436949837 4.610000e-97 364.0
6 TraesCS7A01G332200 chr7D 97.727 176 4 0 1 176 436950764 436950589 1.020000e-78 303.0
7 TraesCS7A01G332200 chr7B 94.754 629 14 8 1470 2084 453443459 453442836 0.000000e+00 961.0
8 TraesCS7A01G332200 chr7B 96.047 506 16 2 767 1272 453444129 453443628 0.000000e+00 821.0
9 TraesCS7A01G332200 chr7B 95.502 289 12 1 192 480 453444764 453444477 5.710000e-126 460.0
10 TraesCS7A01G332200 chr7B 91.246 297 14 7 479 763 453444388 453444092 5.880000e-106 394.0
11 TraesCS7A01G332200 chr7B 98.374 123 1 1 54 176 453444964 453444843 4.910000e-52 215.0
12 TraesCS7A01G332200 chr7B 95.575 113 2 1 1352 1461 453443628 453443516 6.440000e-41 178.0
13 TraesCS7A01G332200 chr5A 98.198 111 1 1 1864 1974 674210418 674210527 2.300000e-45 193.0
14 TraesCS7A01G332200 chr5D 84.146 82 9 4 2082 2161 361172501 361172422 2.420000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G332200 chr7A 485609822 485612091 2269 False 4193.000000 4193 100.000000 1 2270 1 chr7A.!!$F1 2269
1 TraesCS7A01G332200 chr7D 436948504 436950764 2260 True 650.400000 1110 95.153200 1 2084 5 chr7D.!!$R1 2083
2 TraesCS7A01G332200 chr7B 453442836 453444964 2128 True 504.833333 961 95.249667 54 2084 6 chr7B.!!$R1 2030

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 953 0.256752 TGAGGAAGGTGCCATGATGG 59.743 55.0 7.21 7.21 41.55 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 2384 0.102481 CCTCCCGAGTGATGTAACCG 59.898 60.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
187 188 3.996480 AGTCAAAGAAGTCAGTACTGGC 58.004 45.455 19.98 19.98 35.62 4.85
188 189 3.388024 AGTCAAAGAAGTCAGTACTGGCA 59.612 43.478 28.22 5.14 37.73 4.92
189 190 3.743396 GTCAAAGAAGTCAGTACTGGCAG 59.257 47.826 28.22 14.16 37.73 4.85
190 191 3.641436 TCAAAGAAGTCAGTACTGGCAGA 59.359 43.478 28.22 13.01 37.73 4.26
338 402 1.130561 GCACCGTCTTTATTCTGCACC 59.869 52.381 0.00 0.00 0.00 5.01
348 412 2.086054 ATTCTGCACCTCACGAGAAC 57.914 50.000 0.00 0.00 0.00 3.01
551 708 1.069596 GGTTGGTTTGGCTGCCAAG 59.930 57.895 30.63 0.00 44.84 3.61
602 767 7.337480 TGCCGTCTTGTAGTGATACTTTATA 57.663 36.000 0.00 0.00 0.00 0.98
603 768 7.423199 TGCCGTCTTGTAGTGATACTTTATAG 58.577 38.462 0.00 0.00 0.00 1.31
644 811 9.677567 TTTTGCACATTCTAGAAACAAAGATAC 57.322 29.630 9.71 0.00 0.00 2.24
645 812 7.377766 TGCACATTCTAGAAACAAAGATACC 57.622 36.000 9.71 0.00 0.00 2.73
649 816 7.545965 CACATTCTAGAAACAAAGATACCGACT 59.454 37.037 9.71 0.00 0.00 4.18
694 861 5.474825 TGTTGATACTTGATACGAGCACAA 58.525 37.500 0.00 0.00 0.00 3.33
763 932 2.611971 GGTACACAAGTTGATCGCTCCA 60.612 50.000 10.54 0.00 0.00 3.86
764 933 2.479566 ACACAAGTTGATCGCTCCAT 57.520 45.000 10.54 0.00 0.00 3.41
765 934 2.783135 ACACAAGTTGATCGCTCCATT 58.217 42.857 10.54 0.00 0.00 3.16
766 935 2.485426 ACACAAGTTGATCGCTCCATTG 59.515 45.455 10.54 0.00 0.00 2.82
767 936 2.743664 CACAAGTTGATCGCTCCATTGA 59.256 45.455 10.54 0.00 0.00 2.57
768 937 3.005554 ACAAGTTGATCGCTCCATTGAG 58.994 45.455 10.54 0.00 41.84 3.02
769 938 2.322355 AGTTGATCGCTCCATTGAGG 57.678 50.000 0.00 0.00 39.14 3.86
770 939 1.833630 AGTTGATCGCTCCATTGAGGA 59.166 47.619 0.00 0.00 46.75 3.71
778 947 2.473768 TCCATTGAGGAAGGTGCCA 58.526 52.632 0.00 0.00 45.65 4.92
779 948 1.002069 TCCATTGAGGAAGGTGCCAT 58.998 50.000 0.00 0.00 45.65 4.40
780 949 1.108776 CCATTGAGGAAGGTGCCATG 58.891 55.000 0.00 0.00 41.22 3.66
781 950 1.341285 CCATTGAGGAAGGTGCCATGA 60.341 52.381 0.00 0.00 41.22 3.07
782 951 2.662866 CATTGAGGAAGGTGCCATGAT 58.337 47.619 0.00 0.00 0.00 2.45
783 952 2.133281 TTGAGGAAGGTGCCATGATG 57.867 50.000 0.00 0.00 0.00 3.07
784 953 0.256752 TGAGGAAGGTGCCATGATGG 59.743 55.000 7.21 7.21 41.55 3.51
785 954 0.257039 GAGGAAGGTGCCATGATGGT 59.743 55.000 13.84 0.00 40.46 3.55
786 955 1.490490 GAGGAAGGTGCCATGATGGTA 59.510 52.381 13.84 5.59 40.46 3.25
801 970 2.831685 TGGTACACAAGTTGATCGCT 57.168 45.000 10.54 0.00 0.00 4.93
802 971 2.683968 TGGTACACAAGTTGATCGCTC 58.316 47.619 10.54 0.00 0.00 5.03
803 972 2.000447 GGTACACAAGTTGATCGCTCC 59.000 52.381 10.54 0.87 0.00 4.70
804 973 2.611971 GGTACACAAGTTGATCGCTCCA 60.612 50.000 10.54 0.00 0.00 3.86
824 993 5.080337 TCCATCTAGCCACTTGGACTATAG 58.920 45.833 0.00 0.00 37.39 1.31
825 994 4.835615 CCATCTAGCCACTTGGACTATAGT 59.164 45.833 4.68 4.68 37.39 2.12
826 995 6.010850 CCATCTAGCCACTTGGACTATAGTA 58.989 44.000 5.09 0.00 37.39 1.82
838 1007 8.968969 ACTTGGACTATAGTAGTAAGTTTCTGG 58.031 37.037 16.91 1.62 35.25 3.86
925 1094 3.194116 CACATTTGGTGCCTAGCATTCTT 59.806 43.478 0.00 0.00 41.91 2.52
988 1157 2.478894 CGGTAAAAAGAGCGAGCTTTGA 59.521 45.455 0.00 0.00 42.83 2.69
1080 1249 1.774217 TGACCCTGGCCTTCCAACT 60.774 57.895 3.32 0.00 42.91 3.16
1190 1359 1.447317 AAAAGTGGCAGCGGTGAGTG 61.447 55.000 20.69 0.00 0.00 3.51
1225 1394 8.994429 TTGCTTTCTTACTCAATTTTTCAACA 57.006 26.923 0.00 0.00 0.00 3.33
1286 1455 6.018588 CCGAATTAACGGCACTATATTGAACA 60.019 38.462 0.00 0.00 46.20 3.18
1339 1508 3.738982 TGTTTGAATGTCACGTCCTCAT 58.261 40.909 0.00 0.00 0.00 2.90
1370 1539 4.322080 AGGCAAACCAACTAAAAAGAGC 57.678 40.909 0.00 0.00 39.06 4.09
1381 1550 7.084486 CCAACTAAAAAGAGCTTTTATTCGCT 58.916 34.615 8.48 0.00 41.45 4.93
1461 1633 7.015195 ACAGGATGCAACCAGTTAATTAAAGTT 59.985 33.333 16.21 2.04 42.53 2.66
1462 1634 8.519526 CAGGATGCAACCAGTTAATTAAAGTTA 58.480 33.333 16.21 0.00 0.00 2.24
1464 1636 9.869757 GGATGCAACCAGTTAATTAAAGTTAAT 57.130 29.630 8.36 2.88 34.98 1.40
1466 1638 8.527567 TGCAACCAGTTAATTAAAGTTAATGC 57.472 30.769 0.00 7.61 33.85 3.56
1467 1639 8.364142 TGCAACCAGTTAATTAAAGTTAATGCT 58.636 29.630 16.94 1.68 33.85 3.79
1468 1640 9.849166 GCAACCAGTTAATTAAAGTTAATGCTA 57.151 29.630 0.00 0.00 33.85 3.49
1553 1773 5.630680 CAGTTGTTTATTGGATGCTTGTGAC 59.369 40.000 0.00 0.00 0.00 3.67
1613 1833 4.690748 CGGATAAGTTCTTGTTCTGCTTCA 59.309 41.667 0.00 0.00 0.00 3.02
1674 1894 1.065345 TGTTTGTTCCCAGTTCGGTCA 60.065 47.619 0.00 0.00 0.00 4.02
1786 2006 8.948631 AAGTATGGATATATGGCTTGAATACG 57.051 34.615 0.00 0.00 0.00 3.06
1936 2164 4.437682 TGTTGAGGTGAAATGAAGACCT 57.562 40.909 0.00 0.00 43.06 3.85
1937 2165 5.560722 TGTTGAGGTGAAATGAAGACCTA 57.439 39.130 0.00 0.00 40.33 3.08
1966 2194 3.441572 GCAGTGTGGAGTGCATATTCTTT 59.558 43.478 0.00 0.00 46.40 2.52
1967 2195 4.437930 GCAGTGTGGAGTGCATATTCTTTC 60.438 45.833 0.00 0.00 46.40 2.62
2007 2241 5.429957 GCTTGGGAGCTATTTACATGAAG 57.570 43.478 0.00 0.00 45.65 3.02
2009 2243 5.008118 GCTTGGGAGCTATTTACATGAAGAC 59.992 44.000 0.00 0.00 45.65 3.01
2033 2267 4.715297 GGGAGAAGGAGTGGAGTATTACAA 59.285 45.833 0.00 0.00 0.00 2.41
2034 2268 5.395435 GGGAGAAGGAGTGGAGTATTACAAC 60.395 48.000 0.00 0.00 0.00 3.32
2035 2269 5.422650 GGAGAAGGAGTGGAGTATTACAACT 59.577 44.000 0.00 0.00 0.00 3.16
2036 2270 6.070710 GGAGAAGGAGTGGAGTATTACAACTT 60.071 42.308 0.00 0.00 0.00 2.66
2037 2271 7.317722 AGAAGGAGTGGAGTATTACAACTTT 57.682 36.000 0.00 0.00 0.00 2.66
2038 2272 7.162082 AGAAGGAGTGGAGTATTACAACTTTG 58.838 38.462 0.00 0.00 0.00 2.77
2049 2283 2.082366 CAACTTTGTGCCGCATCGC 61.082 57.895 0.00 0.00 0.00 4.58
2089 2323 6.857777 TGGCAAACCATACAATTTTTCTTG 57.142 33.333 0.00 0.00 42.67 3.02
2090 2324 6.586344 TGGCAAACCATACAATTTTTCTTGA 58.414 32.000 0.00 0.00 42.67 3.02
2091 2325 7.050377 TGGCAAACCATACAATTTTTCTTGAA 58.950 30.769 0.00 0.00 42.67 2.69
2092 2326 7.011857 TGGCAAACCATACAATTTTTCTTGAAC 59.988 33.333 0.00 0.00 42.67 3.18
2093 2327 7.226523 GGCAAACCATACAATTTTTCTTGAACT 59.773 33.333 0.00 0.00 35.26 3.01
2094 2328 8.063630 GCAAACCATACAATTTTTCTTGAACTG 58.936 33.333 0.00 0.00 0.00 3.16
2095 2329 8.550376 CAAACCATACAATTTTTCTTGAACTGG 58.450 33.333 0.00 0.00 33.16 4.00
2096 2330 7.595819 ACCATACAATTTTTCTTGAACTGGA 57.404 32.000 0.00 0.00 32.26 3.86
2097 2331 8.017418 ACCATACAATTTTTCTTGAACTGGAA 57.983 30.769 0.00 0.00 32.26 3.53
2098 2332 7.926018 ACCATACAATTTTTCTTGAACTGGAAC 59.074 33.333 0.00 0.00 32.26 3.62
2099 2333 7.925483 CCATACAATTTTTCTTGAACTGGAACA 59.075 33.333 0.00 0.00 30.86 3.18
2100 2334 8.755018 CATACAATTTTTCTTGAACTGGAACAC 58.245 33.333 0.00 0.00 0.00 3.32
2101 2335 6.106003 ACAATTTTTCTTGAACTGGAACACC 58.894 36.000 0.00 0.00 0.00 4.16
2102 2336 6.070824 ACAATTTTTCTTGAACTGGAACACCT 60.071 34.615 0.00 0.00 0.00 4.00
2103 2337 5.993748 TTTTTCTTGAACTGGAACACCTT 57.006 34.783 0.00 0.00 0.00 3.50
2104 2338 4.981806 TTTCTTGAACTGGAACACCTTG 57.018 40.909 0.00 0.00 0.00 3.61
2105 2339 2.297701 TCTTGAACTGGAACACCTTGC 58.702 47.619 0.00 0.00 0.00 4.01
2106 2340 2.023673 CTTGAACTGGAACACCTTGCA 58.976 47.619 0.00 0.00 0.00 4.08
2107 2341 2.363306 TGAACTGGAACACCTTGCAT 57.637 45.000 0.00 0.00 0.00 3.96
2108 2342 2.665165 TGAACTGGAACACCTTGCATT 58.335 42.857 0.00 0.00 0.00 3.56
2109 2343 2.622942 TGAACTGGAACACCTTGCATTC 59.377 45.455 0.00 0.00 0.00 2.67
2110 2344 1.620822 ACTGGAACACCTTGCATTCC 58.379 50.000 8.78 8.78 42.00 3.01
2112 2346 2.079170 TGGAACACCTTGCATTCCAA 57.921 45.000 14.84 1.33 46.93 3.53
2113 2347 2.392662 TGGAACACCTTGCATTCCAAA 58.607 42.857 14.84 0.00 46.93 3.28
2114 2348 2.768527 TGGAACACCTTGCATTCCAAAA 59.231 40.909 14.84 0.00 46.93 2.44
2115 2349 3.390639 TGGAACACCTTGCATTCCAAAAT 59.609 39.130 14.84 0.00 46.93 1.82
2116 2350 3.996363 GGAACACCTTGCATTCCAAAATC 59.004 43.478 10.52 0.00 41.40 2.17
2117 2351 4.502950 GGAACACCTTGCATTCCAAAATCA 60.503 41.667 10.52 0.00 41.40 2.57
2118 2352 3.993920 ACACCTTGCATTCCAAAATCAC 58.006 40.909 0.00 0.00 31.94 3.06
2119 2353 3.244181 ACACCTTGCATTCCAAAATCACC 60.244 43.478 0.00 0.00 31.94 4.02
2120 2354 3.007182 CACCTTGCATTCCAAAATCACCT 59.993 43.478 0.00 0.00 31.94 4.00
2121 2355 3.007182 ACCTTGCATTCCAAAATCACCTG 59.993 43.478 0.00 0.00 31.94 4.00
2122 2356 3.592059 CTTGCATTCCAAAATCACCTGG 58.408 45.455 0.00 0.00 31.94 4.45
2123 2357 1.901159 TGCATTCCAAAATCACCTGGG 59.099 47.619 0.00 0.00 33.19 4.45
2124 2358 2.178580 GCATTCCAAAATCACCTGGGA 58.821 47.619 0.00 0.00 33.19 4.37
2125 2359 2.767960 GCATTCCAAAATCACCTGGGAT 59.232 45.455 0.00 0.00 30.30 3.85
2126 2360 3.181472 GCATTCCAAAATCACCTGGGATC 60.181 47.826 0.00 0.00 27.34 3.36
2127 2361 2.418368 TCCAAAATCACCTGGGATCG 57.582 50.000 0.00 0.00 33.19 3.69
2128 2362 1.912731 TCCAAAATCACCTGGGATCGA 59.087 47.619 0.00 0.00 33.19 3.59
2129 2363 2.017049 CCAAAATCACCTGGGATCGAC 58.983 52.381 0.00 0.00 0.00 4.20
2130 2364 2.017049 CAAAATCACCTGGGATCGACC 58.983 52.381 0.00 0.00 38.08 4.79
2131 2365 1.285280 AAATCACCTGGGATCGACCA 58.715 50.000 0.00 0.88 41.20 4.02
2132 2366 1.285280 AATCACCTGGGATCGACCAA 58.715 50.000 0.00 0.00 40.68 3.67
2133 2367 1.285280 ATCACCTGGGATCGACCAAA 58.715 50.000 0.00 0.00 40.68 3.28
2134 2368 1.285280 TCACCTGGGATCGACCAAAT 58.715 50.000 0.00 0.00 40.68 2.32
2135 2369 1.209504 TCACCTGGGATCGACCAAATC 59.790 52.381 0.00 0.00 40.68 2.17
2145 2379 1.636340 GACCAAATCGGCGATCACG 59.364 57.895 24.20 14.78 39.03 4.35
2146 2380 0.804544 GACCAAATCGGCGATCACGA 60.805 55.000 24.20 11.29 45.19 4.35
2147 2381 1.082117 ACCAAATCGGCGATCACGAC 61.082 55.000 24.20 0.00 43.78 4.34
2154 2388 4.088421 GCGATCACGACATCGGTT 57.912 55.556 18.05 0.00 44.89 4.44
2155 2389 3.245443 GCGATCACGACATCGGTTA 57.755 52.632 18.05 0.00 44.89 2.85
2156 2390 0.844503 GCGATCACGACATCGGTTAC 59.155 55.000 18.05 2.94 44.89 2.50
2157 2391 1.796253 GCGATCACGACATCGGTTACA 60.796 52.381 18.05 0.00 44.89 2.41
2158 2392 2.727777 CGATCACGACATCGGTTACAT 58.272 47.619 6.21 0.00 41.71 2.29
2159 2393 2.719556 CGATCACGACATCGGTTACATC 59.280 50.000 6.21 0.00 41.71 3.06
2160 2394 3.702330 GATCACGACATCGGTTACATCA 58.298 45.455 6.21 0.00 44.95 3.07
2161 2395 2.871133 TCACGACATCGGTTACATCAC 58.129 47.619 6.21 0.00 44.95 3.06
2162 2396 2.490509 TCACGACATCGGTTACATCACT 59.509 45.455 6.21 0.00 44.95 3.41
2163 2397 2.852413 CACGACATCGGTTACATCACTC 59.148 50.000 6.21 0.00 44.95 3.51
2164 2398 2.109463 CGACATCGGTTACATCACTCG 58.891 52.381 0.00 0.00 35.37 4.18
2165 2399 2.460918 GACATCGGTTACATCACTCGG 58.539 52.381 0.00 0.00 0.00 4.63
2166 2400 1.136305 ACATCGGTTACATCACTCGGG 59.864 52.381 0.00 0.00 0.00 5.14
2167 2401 1.407618 CATCGGTTACATCACTCGGGA 59.592 52.381 0.00 0.00 0.00 5.14
2168 2402 1.100510 TCGGTTACATCACTCGGGAG 58.899 55.000 0.00 0.00 0.00 4.30
2169 2403 0.102481 CGGTTACATCACTCGGGAGG 59.898 60.000 0.00 0.00 0.00 4.30
2170 2404 1.192428 GGTTACATCACTCGGGAGGT 58.808 55.000 0.00 0.00 35.72 3.85
2171 2405 1.553704 GGTTACATCACTCGGGAGGTT 59.446 52.381 0.00 0.00 33.35 3.50
2172 2406 2.762327 GGTTACATCACTCGGGAGGTTA 59.238 50.000 0.00 0.00 33.35 2.85
2173 2407 3.196254 GGTTACATCACTCGGGAGGTTAA 59.804 47.826 0.00 0.00 33.35 2.01
2174 2408 4.179298 GTTACATCACTCGGGAGGTTAAC 58.821 47.826 0.00 0.00 33.35 2.01
2175 2409 1.553704 ACATCACTCGGGAGGTTAACC 59.446 52.381 17.41 17.41 0.00 2.85
2176 2410 1.553248 CATCACTCGGGAGGTTAACCA 59.447 52.381 26.26 4.41 38.89 3.67
2177 2411 1.719529 TCACTCGGGAGGTTAACCAA 58.280 50.000 26.26 5.59 38.89 3.67
2178 2412 1.345415 TCACTCGGGAGGTTAACCAAC 59.655 52.381 26.26 18.23 38.89 3.77
2194 2428 2.490328 CAACCACACATGTTGGACAC 57.510 50.000 24.75 0.00 39.48 3.67
2195 2429 1.066908 CAACCACACATGTTGGACACC 59.933 52.381 24.75 0.00 39.48 4.16
2196 2430 0.257328 ACCACACATGTTGGACACCA 59.743 50.000 24.75 0.00 0.00 4.17
2197 2431 1.133513 ACCACACATGTTGGACACCAT 60.134 47.619 24.75 6.83 31.53 3.55
2198 2432 2.107378 ACCACACATGTTGGACACCATA 59.893 45.455 24.75 0.00 31.53 2.74
2199 2433 3.153130 CCACACATGTTGGACACCATAA 58.847 45.455 17.28 0.00 31.53 1.90
2200 2434 3.571828 CCACACATGTTGGACACCATAAA 59.428 43.478 17.28 0.00 31.53 1.40
2201 2435 4.545610 CACACATGTTGGACACCATAAAC 58.454 43.478 0.00 0.00 31.53 2.01
2202 2436 4.037327 CACACATGTTGGACACCATAAACA 59.963 41.667 0.00 0.00 31.53 2.83
2203 2437 4.037446 ACACATGTTGGACACCATAAACAC 59.963 41.667 0.00 0.00 31.53 3.32
2204 2438 3.572255 ACATGTTGGACACCATAAACACC 59.428 43.478 0.00 0.00 31.53 4.16
2205 2439 3.298686 TGTTGGACACCATAAACACCA 57.701 42.857 0.00 0.00 31.53 4.17
2206 2440 2.952978 TGTTGGACACCATAAACACCAC 59.047 45.455 0.00 0.00 31.53 4.16
2207 2441 1.885560 TGGACACCATAAACACCACG 58.114 50.000 0.00 0.00 0.00 4.94
2208 2442 0.519961 GGACACCATAAACACCACGC 59.480 55.000 0.00 0.00 0.00 5.34
2209 2443 0.519961 GACACCATAAACACCACGCC 59.480 55.000 0.00 0.00 0.00 5.68
2210 2444 0.109723 ACACCATAAACACCACGCCT 59.890 50.000 0.00 0.00 0.00 5.52
2211 2445 1.348366 ACACCATAAACACCACGCCTA 59.652 47.619 0.00 0.00 0.00 3.93
2212 2446 1.735571 CACCATAAACACCACGCCTAC 59.264 52.381 0.00 0.00 0.00 3.18
2213 2447 1.339342 ACCATAAACACCACGCCTACC 60.339 52.381 0.00 0.00 0.00 3.18
2214 2448 1.339247 CCATAAACACCACGCCTACCA 60.339 52.381 0.00 0.00 0.00 3.25
2215 2449 2.006888 CATAAACACCACGCCTACCAG 58.993 52.381 0.00 0.00 0.00 4.00
2216 2450 0.322322 TAAACACCACGCCTACCAGG 59.678 55.000 0.00 0.00 38.80 4.45
2217 2451 1.412453 AAACACCACGCCTACCAGGA 61.412 55.000 0.00 0.00 37.67 3.86
2218 2452 1.827399 AACACCACGCCTACCAGGAG 61.827 60.000 0.00 0.00 41.31 3.69
2219 2453 3.391382 ACCACGCCTACCAGGAGC 61.391 66.667 0.00 0.00 38.91 4.70
2220 2454 3.077556 CCACGCCTACCAGGAGCT 61.078 66.667 0.00 0.00 38.91 4.09
2221 2455 2.185350 CACGCCTACCAGGAGCTG 59.815 66.667 0.00 0.00 38.91 4.24
2222 2456 3.775654 ACGCCTACCAGGAGCTGC 61.776 66.667 0.00 0.00 38.91 5.25
2223 2457 3.465403 CGCCTACCAGGAGCTGCT 61.465 66.667 0.00 0.00 37.67 4.24
2224 2458 2.127869 CGCCTACCAGGAGCTGCTA 61.128 63.158 7.70 0.00 37.67 3.49
2225 2459 1.745264 GCCTACCAGGAGCTGCTAG 59.255 63.158 7.70 2.44 37.67 3.42
2226 2460 1.745264 CCTACCAGGAGCTGCTAGC 59.255 63.158 7.70 8.10 42.84 3.42
2227 2461 1.045350 CCTACCAGGAGCTGCTAGCA 61.045 60.000 18.22 18.22 45.56 3.49
2228 2462 0.103937 CTACCAGGAGCTGCTAGCAC 59.896 60.000 14.93 11.12 45.56 4.40
2229 2463 0.614697 TACCAGGAGCTGCTAGCACA 60.615 55.000 14.93 0.00 45.56 4.57
2230 2464 1.270414 ACCAGGAGCTGCTAGCACAT 61.270 55.000 14.93 4.78 45.56 3.21
2231 2465 0.814410 CCAGGAGCTGCTAGCACATG 60.814 60.000 14.93 12.26 45.56 3.21
2232 2466 0.107800 CAGGAGCTGCTAGCACATGT 60.108 55.000 14.93 0.00 45.56 3.21
2233 2467 0.107800 AGGAGCTGCTAGCACATGTG 60.108 55.000 21.83 21.83 45.56 3.21
2247 2481 2.554806 CATGTGCTGGCATGTTACAG 57.445 50.000 0.00 9.05 40.81 2.74
2248 2482 2.086094 CATGTGCTGGCATGTTACAGA 58.914 47.619 15.32 0.23 40.81 3.41
2249 2483 1.522668 TGTGCTGGCATGTTACAGAC 58.477 50.000 15.32 11.35 36.86 3.51
2250 2484 1.072173 TGTGCTGGCATGTTACAGACT 59.928 47.619 15.32 0.00 36.86 3.24
2251 2485 2.301583 TGTGCTGGCATGTTACAGACTA 59.698 45.455 15.32 2.07 36.86 2.59
2252 2486 3.055167 TGTGCTGGCATGTTACAGACTAT 60.055 43.478 15.32 0.00 36.86 2.12
2253 2487 4.161377 TGTGCTGGCATGTTACAGACTATA 59.839 41.667 15.32 1.08 36.86 1.31
2254 2488 4.747108 GTGCTGGCATGTTACAGACTATAG 59.253 45.833 15.32 0.00 36.86 1.31
2255 2489 4.202253 TGCTGGCATGTTACAGACTATAGG 60.202 45.833 15.32 0.00 36.86 2.57
2256 2490 4.039245 GCTGGCATGTTACAGACTATAGGA 59.961 45.833 15.32 0.00 36.86 2.94
2257 2491 5.531122 TGGCATGTTACAGACTATAGGAC 57.469 43.478 4.43 0.00 0.00 3.85
2258 2492 4.959839 TGGCATGTTACAGACTATAGGACA 59.040 41.667 4.43 0.10 0.00 4.02
2259 2493 5.069119 TGGCATGTTACAGACTATAGGACAG 59.931 44.000 4.43 0.00 0.00 3.51
2260 2494 4.985409 GCATGTTACAGACTATAGGACAGC 59.015 45.833 4.43 2.55 0.00 4.40
2261 2495 5.451937 GCATGTTACAGACTATAGGACAGCA 60.452 44.000 4.43 0.00 0.00 4.41
2262 2496 5.836821 TGTTACAGACTATAGGACAGCAG 57.163 43.478 4.43 0.00 0.00 4.24
2263 2497 4.645136 TGTTACAGACTATAGGACAGCAGG 59.355 45.833 4.43 0.00 0.00 4.85
2264 2498 3.390175 ACAGACTATAGGACAGCAGGT 57.610 47.619 4.43 0.00 0.00 4.00
2265 2499 3.714144 ACAGACTATAGGACAGCAGGTT 58.286 45.455 4.43 0.00 0.00 3.50
2266 2500 4.868268 ACAGACTATAGGACAGCAGGTTA 58.132 43.478 4.43 0.00 0.00 2.85
2267 2501 4.645588 ACAGACTATAGGACAGCAGGTTAC 59.354 45.833 4.43 0.00 0.00 2.50
2268 2502 4.645136 CAGACTATAGGACAGCAGGTTACA 59.355 45.833 4.43 0.00 0.00 2.41
2269 2503 5.303078 CAGACTATAGGACAGCAGGTTACAT 59.697 44.000 4.43 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.227614 AGAGCATCATATGGCAATGCAA 58.772 40.909 22.71 0.00 46.43 4.08
176 177 4.154918 CCTTTTCAATCTGCCAGTACTGAC 59.845 45.833 24.68 13.81 0.00 3.51
178 179 4.074970 ACCTTTTCAATCTGCCAGTACTG 58.925 43.478 16.34 16.34 0.00 2.74
179 180 4.373156 ACCTTTTCAATCTGCCAGTACT 57.627 40.909 0.00 0.00 0.00 2.73
180 181 5.066505 CCATACCTTTTCAATCTGCCAGTAC 59.933 44.000 0.00 0.00 0.00 2.73
182 183 4.019174 CCATACCTTTTCAATCTGCCAGT 58.981 43.478 0.00 0.00 0.00 4.00
183 184 3.181483 GCCATACCTTTTCAATCTGCCAG 60.181 47.826 0.00 0.00 0.00 4.85
185 186 2.223572 CGCCATACCTTTTCAATCTGCC 60.224 50.000 0.00 0.00 0.00 4.85
186 187 2.682856 TCGCCATACCTTTTCAATCTGC 59.317 45.455 0.00 0.00 0.00 4.26
187 188 4.155826 TGTTCGCCATACCTTTTCAATCTG 59.844 41.667 0.00 0.00 0.00 2.90
188 189 4.331968 TGTTCGCCATACCTTTTCAATCT 58.668 39.130 0.00 0.00 0.00 2.40
189 190 4.695217 TGTTCGCCATACCTTTTCAATC 57.305 40.909 0.00 0.00 0.00 2.67
190 191 5.659440 ATTGTTCGCCATACCTTTTCAAT 57.341 34.783 0.00 0.00 0.00 2.57
303 367 2.292292 ACGGTGCCATTTTGTCTGTTAC 59.708 45.455 0.00 0.00 0.00 2.50
338 402 5.207768 CAAATGTTGGAAAGTTCTCGTGAG 58.792 41.667 0.00 0.00 0.00 3.51
348 412 4.520492 AGTGCTCCTACAAATGTTGGAAAG 59.480 41.667 15.72 8.09 46.28 2.62
512 669 3.443681 CCACCACAACTGAAACAGAAAGT 59.556 43.478 5.76 0.00 35.18 2.66
551 708 2.157738 ACTTGCCAAGATCAGTGAAGC 58.842 47.619 12.25 0.00 0.00 3.86
557 714 4.387862 GCAATTCAAACTTGCCAAGATCAG 59.612 41.667 12.25 0.00 42.47 2.90
602 767 6.163476 TGTGCAAAAGACGTGTATCTATTCT 58.837 36.000 0.00 0.00 0.00 2.40
603 768 6.403333 TGTGCAAAAGACGTGTATCTATTC 57.597 37.500 0.00 0.00 0.00 1.75
615 780 7.915397 TCTTTGTTTCTAGAATGTGCAAAAGAC 59.085 33.333 5.89 0.00 0.00 3.01
665 832 6.422100 GCTCGTATCAAGTATCAACATCACAT 59.578 38.462 0.00 0.00 0.00 3.21
687 854 1.980844 CATGTGCGACAAATTGTGCTC 59.019 47.619 2.20 9.09 0.00 4.26
694 861 3.429272 CCAATAAGGCATGTGCGACAAAT 60.429 43.478 0.00 0.00 43.26 2.32
763 932 2.662866 CATCATGGCACCTTCCTCAAT 58.337 47.619 0.00 0.00 0.00 2.57
764 933 1.341285 CCATCATGGCACCTTCCTCAA 60.341 52.381 0.00 0.00 0.00 3.02
765 934 0.256752 CCATCATGGCACCTTCCTCA 59.743 55.000 0.00 0.00 0.00 3.86
766 935 0.257039 ACCATCATGGCACCTTCCTC 59.743 55.000 2.52 0.00 42.67 3.71
767 936 1.212935 GTACCATCATGGCACCTTCCT 59.787 52.381 2.52 0.00 42.67 3.36
768 937 1.064758 TGTACCATCATGGCACCTTCC 60.065 52.381 2.52 0.00 42.67 3.46
769 938 2.017049 GTGTACCATCATGGCACCTTC 58.983 52.381 2.52 0.00 42.67 3.46
770 939 1.354031 TGTGTACCATCATGGCACCTT 59.646 47.619 2.52 0.00 42.67 3.50
771 940 0.991146 TGTGTACCATCATGGCACCT 59.009 50.000 2.52 0.00 42.67 4.00
772 941 1.745087 CTTGTGTACCATCATGGCACC 59.255 52.381 2.52 0.00 42.67 5.01
773 942 2.436417 ACTTGTGTACCATCATGGCAC 58.564 47.619 2.52 0.70 42.67 5.01
774 943 2.819019 CAACTTGTGTACCATCATGGCA 59.181 45.455 2.52 0.00 42.67 4.92
775 944 3.081061 TCAACTTGTGTACCATCATGGC 58.919 45.455 2.52 0.00 42.67 4.40
776 945 4.034394 CGATCAACTTGTGTACCATCATGG 59.966 45.833 0.54 0.54 45.02 3.66
777 946 4.494690 GCGATCAACTTGTGTACCATCATG 60.495 45.833 0.00 0.00 0.00 3.07
778 947 3.623060 GCGATCAACTTGTGTACCATCAT 59.377 43.478 0.00 0.00 0.00 2.45
779 948 3.000041 GCGATCAACTTGTGTACCATCA 59.000 45.455 0.00 0.00 0.00 3.07
780 949 3.262420 AGCGATCAACTTGTGTACCATC 58.738 45.455 0.00 0.00 0.00 3.51
781 950 3.262420 GAGCGATCAACTTGTGTACCAT 58.738 45.455 0.00 0.00 0.00 3.55
782 951 2.611971 GGAGCGATCAACTTGTGTACCA 60.612 50.000 1.84 0.00 0.00 3.25
783 952 2.000447 GGAGCGATCAACTTGTGTACC 59.000 52.381 1.84 0.00 0.00 3.34
784 953 2.683968 TGGAGCGATCAACTTGTGTAC 58.316 47.619 1.84 0.00 0.00 2.90
785 954 3.195610 AGATGGAGCGATCAACTTGTGTA 59.804 43.478 1.84 0.00 0.00 2.90
786 955 2.027745 AGATGGAGCGATCAACTTGTGT 60.028 45.455 1.84 0.00 0.00 3.72
787 956 2.625737 AGATGGAGCGATCAACTTGTG 58.374 47.619 1.84 0.00 0.00 3.33
788 957 3.739519 GCTAGATGGAGCGATCAACTTGT 60.740 47.826 1.84 0.00 31.57 3.16
789 958 2.799412 GCTAGATGGAGCGATCAACTTG 59.201 50.000 1.84 0.90 31.57 3.16
790 959 2.224161 GGCTAGATGGAGCGATCAACTT 60.224 50.000 1.84 0.00 43.83 2.66
791 960 1.342819 GGCTAGATGGAGCGATCAACT 59.657 52.381 1.84 0.78 43.83 3.16
792 961 1.069204 TGGCTAGATGGAGCGATCAAC 59.931 52.381 1.84 0.00 43.83 3.18
793 962 1.069204 GTGGCTAGATGGAGCGATCAA 59.931 52.381 1.84 0.00 43.83 2.57
794 963 0.676184 GTGGCTAGATGGAGCGATCA 59.324 55.000 1.84 0.00 43.83 2.92
795 964 0.965439 AGTGGCTAGATGGAGCGATC 59.035 55.000 0.00 0.00 43.83 3.69
796 965 1.069823 CAAGTGGCTAGATGGAGCGAT 59.930 52.381 0.00 0.00 43.83 4.58
797 966 0.461548 CAAGTGGCTAGATGGAGCGA 59.538 55.000 0.00 0.00 43.83 4.93
798 967 0.531532 CCAAGTGGCTAGATGGAGCG 60.532 60.000 0.00 0.00 43.83 5.03
799 968 0.833287 TCCAAGTGGCTAGATGGAGC 59.167 55.000 0.00 0.00 42.05 4.70
800 969 2.114616 AGTCCAAGTGGCTAGATGGAG 58.885 52.381 4.21 0.00 42.35 3.86
801 970 2.254152 AGTCCAAGTGGCTAGATGGA 57.746 50.000 0.00 0.10 39.57 3.41
802 971 4.835615 ACTATAGTCCAAGTGGCTAGATGG 59.164 45.833 0.00 0.00 34.44 3.51
803 972 6.717540 ACTACTATAGTCCAAGTGGCTAGATG 59.282 42.308 9.12 0.00 32.47 2.90
804 973 6.854578 ACTACTATAGTCCAAGTGGCTAGAT 58.145 40.000 9.12 0.00 32.47 1.98
824 993 5.334182 GCAGTTGAAGCCAGAAACTTACTAC 60.334 44.000 0.00 0.00 31.88 2.73
825 994 4.755123 GCAGTTGAAGCCAGAAACTTACTA 59.245 41.667 0.00 0.00 31.88 1.82
826 995 3.565902 GCAGTTGAAGCCAGAAACTTACT 59.434 43.478 0.00 0.00 31.88 2.24
838 1007 2.751259 TCATCCATTGAGCAGTTGAAGC 59.249 45.455 0.00 0.00 0.00 3.86
925 1094 1.527034 GCTTGATGAGGCACAAGTCA 58.473 50.000 0.00 1.17 43.41 3.41
988 1157 1.378911 TCGCCATTGCTGCCAATCT 60.379 52.632 0.00 0.00 39.60 2.40
1080 1249 2.195567 GCCTTGAGCAGCAACACCA 61.196 57.895 0.00 0.00 42.97 4.17
1190 1359 8.519492 TTGAGTAAGAAAGCAAAAACATATGC 57.481 30.769 1.58 0.00 42.87 3.14
1225 1394 3.256631 GCTGTGGATGACAAAGACCAAAT 59.743 43.478 0.00 0.00 36.45 2.32
1286 1455 7.883311 ACCAACAATTAGTTCAACAGTATAGCT 59.117 33.333 0.00 0.00 38.74 3.32
1310 1479 2.030805 GTGACATTCAAACAGCTCCACC 60.031 50.000 0.00 0.00 0.00 4.61
1339 1508 0.847373 TGGTTTGCCTAAGGTGTCCA 59.153 50.000 0.00 0.00 35.27 4.02
1350 1519 4.322080 AGCTCTTTTTAGTTGGTTTGCC 57.678 40.909 0.00 0.00 0.00 4.52
1462 1634 7.918536 AAGATGATCGCATAAGAATAGCATT 57.081 32.000 0.00 0.00 34.11 3.56
1464 1636 7.606349 ACTAAGATGATCGCATAAGAATAGCA 58.394 34.615 0.00 0.00 34.11 3.49
1465 1637 8.472683 AACTAAGATGATCGCATAAGAATAGC 57.527 34.615 0.00 0.00 34.11 2.97
1468 1640 9.988815 ACTTAACTAAGATGATCGCATAAGAAT 57.011 29.630 3.50 0.00 37.08 2.40
1477 1697 7.763172 AAGCTTCACTTAACTAAGATGATCG 57.237 36.000 0.00 0.00 36.62 3.69
1553 1773 1.117150 CCCAATTGGATTCCCTGCAG 58.883 55.000 26.60 6.78 37.39 4.41
1785 2005 7.434602 CCATAGATACTATTGATCAGATGTGCG 59.565 40.741 0.00 0.00 0.00 5.34
1786 2006 7.710044 CCCATAGATACTATTGATCAGATGTGC 59.290 40.741 0.00 0.00 0.00 4.57
1936 2164 2.493035 CACTCCACACTGCAACACATA 58.507 47.619 0.00 0.00 0.00 2.29
1937 2165 1.311859 CACTCCACACTGCAACACAT 58.688 50.000 0.00 0.00 0.00 3.21
1966 2194 2.372172 AGCCGAGAGAAAAGGGAAAAGA 59.628 45.455 0.00 0.00 0.00 2.52
1967 2195 2.784347 AGCCGAGAGAAAAGGGAAAAG 58.216 47.619 0.00 0.00 0.00 2.27
2004 2238 0.533032 CCACTCCTTCTCCCGTCTTC 59.467 60.000 0.00 0.00 0.00 2.87
2007 2241 0.612453 ACTCCACTCCTTCTCCCGTC 60.612 60.000 0.00 0.00 0.00 4.79
2009 2243 2.074729 ATACTCCACTCCTTCTCCCG 57.925 55.000 0.00 0.00 0.00 5.14
2049 2283 1.335872 GCCAATTTCACAGAACCCACG 60.336 52.381 0.00 0.00 0.00 4.94
2084 2318 2.687935 GCAAGGTGTTCCAGTTCAAGAA 59.312 45.455 0.00 0.00 35.89 2.52
2085 2319 2.297701 GCAAGGTGTTCCAGTTCAAGA 58.702 47.619 0.00 0.00 35.89 3.02
2086 2320 2.023673 TGCAAGGTGTTCCAGTTCAAG 58.976 47.619 0.00 0.00 35.89 3.02
2087 2321 2.136298 TGCAAGGTGTTCCAGTTCAA 57.864 45.000 0.00 0.00 35.89 2.69
2088 2322 2.363306 ATGCAAGGTGTTCCAGTTCA 57.637 45.000 0.00 0.00 35.89 3.18
2089 2323 2.029918 GGAATGCAAGGTGTTCCAGTTC 60.030 50.000 10.52 0.00 40.82 3.01
2090 2324 1.963515 GGAATGCAAGGTGTTCCAGTT 59.036 47.619 10.52 0.00 40.82 3.16
2091 2325 1.133513 TGGAATGCAAGGTGTTCCAGT 60.134 47.619 13.51 0.00 44.67 4.00
2092 2326 1.619654 TGGAATGCAAGGTGTTCCAG 58.380 50.000 13.51 0.00 44.67 3.86
2093 2327 3.837893 TGGAATGCAAGGTGTTCCA 57.162 47.368 13.51 13.51 46.67 3.53
2094 2328 3.467374 TTTTGGAATGCAAGGTGTTCC 57.533 42.857 8.78 8.78 41.37 3.62
2095 2329 4.448732 GTGATTTTGGAATGCAAGGTGTTC 59.551 41.667 0.00 0.00 0.00 3.18
2096 2330 4.379652 GTGATTTTGGAATGCAAGGTGTT 58.620 39.130 0.00 0.00 0.00 3.32
2097 2331 3.244181 GGTGATTTTGGAATGCAAGGTGT 60.244 43.478 0.00 0.00 0.00 4.16
2098 2332 3.007182 AGGTGATTTTGGAATGCAAGGTG 59.993 43.478 0.00 0.00 0.00 4.00
2099 2333 3.007182 CAGGTGATTTTGGAATGCAAGGT 59.993 43.478 0.00 0.00 0.00 3.50
2100 2334 3.592059 CAGGTGATTTTGGAATGCAAGG 58.408 45.455 0.00 0.00 0.00 3.61
2101 2335 3.592059 CCAGGTGATTTTGGAATGCAAG 58.408 45.455 0.00 0.00 36.55 4.01
2102 2336 2.302445 CCCAGGTGATTTTGGAATGCAA 59.698 45.455 0.00 0.00 36.55 4.08
2103 2337 1.901159 CCCAGGTGATTTTGGAATGCA 59.099 47.619 0.00 0.00 36.55 3.96
2104 2338 2.178580 TCCCAGGTGATTTTGGAATGC 58.821 47.619 0.00 0.00 36.55 3.56
2105 2339 3.067180 CGATCCCAGGTGATTTTGGAATG 59.933 47.826 0.00 0.00 36.55 2.67
2106 2340 3.053693 TCGATCCCAGGTGATTTTGGAAT 60.054 43.478 0.00 0.00 36.55 3.01
2107 2341 2.307392 TCGATCCCAGGTGATTTTGGAA 59.693 45.455 0.00 0.00 36.55 3.53
2108 2342 1.912731 TCGATCCCAGGTGATTTTGGA 59.087 47.619 0.00 0.00 36.55 3.53
2109 2343 2.017049 GTCGATCCCAGGTGATTTTGG 58.983 52.381 0.00 0.00 0.00 3.28
2110 2344 2.017049 GGTCGATCCCAGGTGATTTTG 58.983 52.381 0.00 0.00 0.00 2.44
2111 2345 1.633432 TGGTCGATCCCAGGTGATTTT 59.367 47.619 0.00 0.00 34.77 1.82
2112 2346 1.285280 TGGTCGATCCCAGGTGATTT 58.715 50.000 0.00 0.00 34.77 2.17
2113 2347 1.285280 TTGGTCGATCCCAGGTGATT 58.715 50.000 0.00 0.00 35.49 2.57
2114 2348 1.285280 TTTGGTCGATCCCAGGTGAT 58.715 50.000 0.00 0.00 35.49 3.06
2115 2349 1.209504 GATTTGGTCGATCCCAGGTGA 59.790 52.381 0.00 0.00 35.49 4.02
2116 2350 1.668419 GATTTGGTCGATCCCAGGTG 58.332 55.000 0.00 0.00 35.49 4.00
2127 2361 0.804544 TCGTGATCGCCGATTTGGTC 60.805 55.000 0.00 0.00 41.21 4.02
2128 2362 1.082117 GTCGTGATCGCCGATTTGGT 61.082 55.000 0.00 0.00 41.21 3.67
2129 2363 1.081556 TGTCGTGATCGCCGATTTGG 61.082 55.000 0.00 0.00 42.50 3.28
2130 2364 0.930310 ATGTCGTGATCGCCGATTTG 59.070 50.000 0.00 0.00 36.62 2.32
2131 2365 1.209128 GATGTCGTGATCGCCGATTT 58.791 50.000 0.00 2.30 36.62 2.17
2132 2366 0.934901 CGATGTCGTGATCGCCGATT 60.935 55.000 0.00 2.61 38.90 3.34
2133 2367 1.370535 CGATGTCGTGATCGCCGAT 60.371 57.895 0.00 0.00 38.90 4.18
2134 2368 2.024163 CGATGTCGTGATCGCCGA 59.976 61.111 0.00 1.72 38.90 5.54
2135 2369 3.024609 CCGATGTCGTGATCGCCG 61.025 66.667 11.69 0.00 43.22 6.46
2136 2370 0.248743 TAACCGATGTCGTGATCGCC 60.249 55.000 11.69 0.00 43.22 5.54
2137 2371 0.844503 GTAACCGATGTCGTGATCGC 59.155 55.000 11.69 0.00 43.22 4.58
2138 2372 2.182904 TGTAACCGATGTCGTGATCG 57.817 50.000 10.59 10.59 44.00 3.69
2139 2373 3.486108 GTGATGTAACCGATGTCGTGATC 59.514 47.826 1.44 0.00 37.74 2.92
2140 2374 3.130516 AGTGATGTAACCGATGTCGTGAT 59.869 43.478 1.44 0.00 37.74 3.06
2141 2375 2.490509 AGTGATGTAACCGATGTCGTGA 59.509 45.455 1.44 0.00 37.74 4.35
2142 2376 2.852413 GAGTGATGTAACCGATGTCGTG 59.148 50.000 1.44 0.00 37.74 4.35
2143 2377 2.477357 CGAGTGATGTAACCGATGTCGT 60.477 50.000 1.44 0.00 37.74 4.34
2144 2378 2.109463 CGAGTGATGTAACCGATGTCG 58.891 52.381 0.00 0.00 39.44 4.35
2145 2379 2.460918 CCGAGTGATGTAACCGATGTC 58.539 52.381 0.00 0.00 0.00 3.06
2146 2380 1.136305 CCCGAGTGATGTAACCGATGT 59.864 52.381 0.00 0.00 0.00 3.06
2147 2381 1.407618 TCCCGAGTGATGTAACCGATG 59.592 52.381 0.00 0.00 0.00 3.84
2148 2382 1.681793 CTCCCGAGTGATGTAACCGAT 59.318 52.381 0.00 0.00 0.00 4.18
2149 2383 1.100510 CTCCCGAGTGATGTAACCGA 58.899 55.000 0.00 0.00 0.00 4.69
2150 2384 0.102481 CCTCCCGAGTGATGTAACCG 59.898 60.000 0.00 0.00 0.00 4.44
2151 2385 1.192428 ACCTCCCGAGTGATGTAACC 58.808 55.000 0.00 0.00 0.00 2.85
2152 2386 4.179298 GTTAACCTCCCGAGTGATGTAAC 58.821 47.826 0.00 0.00 0.00 2.50
2153 2387 3.196254 GGTTAACCTCCCGAGTGATGTAA 59.804 47.826 17.83 0.00 0.00 2.41
2154 2388 2.762327 GGTTAACCTCCCGAGTGATGTA 59.238 50.000 17.83 0.00 0.00 2.29
2155 2389 1.553704 GGTTAACCTCCCGAGTGATGT 59.446 52.381 17.83 0.00 0.00 3.06
2156 2390 1.553248 TGGTTAACCTCCCGAGTGATG 59.447 52.381 24.78 0.00 36.82 3.07
2157 2391 1.946984 TGGTTAACCTCCCGAGTGAT 58.053 50.000 24.78 0.00 36.82 3.06
2158 2392 1.345415 GTTGGTTAACCTCCCGAGTGA 59.655 52.381 24.78 0.00 36.82 3.41
2159 2393 1.804601 GTTGGTTAACCTCCCGAGTG 58.195 55.000 24.78 0.00 36.82 3.51
2175 2409 1.066908 GGTGTCCAACATGTGTGGTTG 59.933 52.381 19.83 7.10 43.99 3.77
2176 2410 1.341482 TGGTGTCCAACATGTGTGGTT 60.341 47.619 19.83 0.00 0.00 3.67
2177 2411 0.257328 TGGTGTCCAACATGTGTGGT 59.743 50.000 19.83 0.00 0.00 4.16
2178 2412 1.619654 ATGGTGTCCAACATGTGTGG 58.380 50.000 16.49 16.49 37.35 4.17
2179 2413 4.037327 TGTTTATGGTGTCCAACATGTGTG 59.963 41.667 8.06 0.00 39.45 3.82
2180 2414 4.037446 GTGTTTATGGTGTCCAACATGTGT 59.963 41.667 8.06 0.00 39.45 3.72
2181 2415 4.545610 GTGTTTATGGTGTCCAACATGTG 58.454 43.478 8.06 0.00 39.45 3.21
2182 2416 3.572255 GGTGTTTATGGTGTCCAACATGT 59.428 43.478 8.06 0.00 39.45 3.21
2183 2417 3.571828 TGGTGTTTATGGTGTCCAACATG 59.428 43.478 8.06 0.00 39.45 3.21
2184 2418 3.572255 GTGGTGTTTATGGTGTCCAACAT 59.428 43.478 2.98 2.98 42.28 2.71
2185 2419 2.952978 GTGGTGTTTATGGTGTCCAACA 59.047 45.455 0.00 0.00 36.95 3.33
2186 2420 2.031508 CGTGGTGTTTATGGTGTCCAAC 60.032 50.000 0.00 0.00 36.95 3.77
2187 2421 2.222886 CGTGGTGTTTATGGTGTCCAA 58.777 47.619 0.00 0.00 36.95 3.53
2188 2422 1.885560 CGTGGTGTTTATGGTGTCCA 58.114 50.000 0.00 0.00 38.19 4.02
2189 2423 0.519961 GCGTGGTGTTTATGGTGTCC 59.480 55.000 0.00 0.00 0.00 4.02
2190 2424 0.519961 GGCGTGGTGTTTATGGTGTC 59.480 55.000 0.00 0.00 0.00 3.67
2191 2425 0.109723 AGGCGTGGTGTTTATGGTGT 59.890 50.000 0.00 0.00 0.00 4.16
2192 2426 1.735571 GTAGGCGTGGTGTTTATGGTG 59.264 52.381 0.00 0.00 0.00 4.17
2193 2427 1.339342 GGTAGGCGTGGTGTTTATGGT 60.339 52.381 0.00 0.00 0.00 3.55
2194 2428 1.339247 TGGTAGGCGTGGTGTTTATGG 60.339 52.381 0.00 0.00 0.00 2.74
2195 2429 2.006888 CTGGTAGGCGTGGTGTTTATG 58.993 52.381 0.00 0.00 0.00 1.90
2196 2430 1.065709 CCTGGTAGGCGTGGTGTTTAT 60.066 52.381 0.00 0.00 0.00 1.40
2197 2431 0.322322 CCTGGTAGGCGTGGTGTTTA 59.678 55.000 0.00 0.00 0.00 2.01
2198 2432 1.072505 CCTGGTAGGCGTGGTGTTT 59.927 57.895 0.00 0.00 0.00 2.83
2199 2433 1.827399 CTCCTGGTAGGCGTGGTGTT 61.827 60.000 0.00 0.00 34.61 3.32
2200 2434 2.203728 TCCTGGTAGGCGTGGTGT 60.204 61.111 0.00 0.00 34.61 4.16
2201 2435 2.579201 CTCCTGGTAGGCGTGGTG 59.421 66.667 0.00 0.00 34.61 4.17
2202 2436 3.391382 GCTCCTGGTAGGCGTGGT 61.391 66.667 0.00 0.00 34.61 4.16
2203 2437 3.077556 AGCTCCTGGTAGGCGTGG 61.078 66.667 0.00 0.00 34.61 4.94
2204 2438 2.185350 CAGCTCCTGGTAGGCGTG 59.815 66.667 0.00 0.00 34.61 5.34
2205 2439 2.856039 TAGCAGCTCCTGGTAGGCGT 62.856 60.000 0.00 0.00 42.44 5.68
2206 2440 2.127869 TAGCAGCTCCTGGTAGGCG 61.128 63.158 0.00 0.00 42.44 5.52
2207 2441 3.956377 TAGCAGCTCCTGGTAGGC 58.044 61.111 0.00 0.00 42.44 3.93
2210 2444 0.614697 TGTGCTAGCAGCTCCTGGTA 60.615 55.000 20.03 4.35 42.97 3.25
2211 2445 1.270414 ATGTGCTAGCAGCTCCTGGT 61.270 55.000 20.03 2.35 42.97 4.00
2212 2446 0.814410 CATGTGCTAGCAGCTCCTGG 60.814 60.000 20.03 0.00 42.97 4.45
2213 2447 0.107800 ACATGTGCTAGCAGCTCCTG 60.108 55.000 20.03 12.16 42.97 3.86
2214 2448 0.107800 CACATGTGCTAGCAGCTCCT 60.108 55.000 20.03 0.00 42.97 3.69
2215 2449 2.391469 CACATGTGCTAGCAGCTCC 58.609 57.895 20.03 6.91 42.97 4.70
2229 2463 2.086869 GTCTGTAACATGCCAGCACAT 58.913 47.619 0.00 0.00 0.00 3.21
2230 2464 1.072173 AGTCTGTAACATGCCAGCACA 59.928 47.619 0.00 0.00 0.00 4.57
2231 2465 1.813513 AGTCTGTAACATGCCAGCAC 58.186 50.000 0.00 0.00 0.00 4.40
2232 2466 3.912496 ATAGTCTGTAACATGCCAGCA 57.088 42.857 0.00 0.00 0.00 4.41
2233 2467 4.039245 TCCTATAGTCTGTAACATGCCAGC 59.961 45.833 0.00 0.00 0.00 4.85
2234 2468 5.069119 TGTCCTATAGTCTGTAACATGCCAG 59.931 44.000 0.00 0.00 0.00 4.85
2235 2469 4.959839 TGTCCTATAGTCTGTAACATGCCA 59.040 41.667 0.00 0.00 0.00 4.92
2236 2470 5.531122 TGTCCTATAGTCTGTAACATGCC 57.469 43.478 0.00 0.00 0.00 4.40
2237 2471 4.985409 GCTGTCCTATAGTCTGTAACATGC 59.015 45.833 0.00 0.00 0.00 4.06
2238 2472 6.149129 TGCTGTCCTATAGTCTGTAACATG 57.851 41.667 0.00 0.00 0.00 3.21
2239 2473 5.303078 CCTGCTGTCCTATAGTCTGTAACAT 59.697 44.000 0.00 0.00 0.00 2.71
2240 2474 4.645136 CCTGCTGTCCTATAGTCTGTAACA 59.355 45.833 0.00 0.00 0.00 2.41
2241 2475 4.645588 ACCTGCTGTCCTATAGTCTGTAAC 59.354 45.833 0.00 0.00 0.00 2.50
2242 2476 4.868268 ACCTGCTGTCCTATAGTCTGTAA 58.132 43.478 0.00 0.00 0.00 2.41
2243 2477 4.521536 ACCTGCTGTCCTATAGTCTGTA 57.478 45.455 0.00 0.00 0.00 2.74
2244 2478 3.390175 ACCTGCTGTCCTATAGTCTGT 57.610 47.619 0.00 0.00 0.00 3.41
2245 2479 4.645136 TGTAACCTGCTGTCCTATAGTCTG 59.355 45.833 0.00 0.00 0.00 3.51
2246 2480 4.868268 TGTAACCTGCTGTCCTATAGTCT 58.132 43.478 0.00 0.00 0.00 3.24
2247 2481 5.793030 ATGTAACCTGCTGTCCTATAGTC 57.207 43.478 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.