Multiple sequence alignment - TraesCS7A01G329400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G329400 chr7A 100.000 3986 0 0 1 3986 479834600 479838585 0.000000e+00 7361.0
1 TraesCS7A01G329400 chr7A 89.062 2569 191 35 627 3130 88935209 88932666 0.000000e+00 3107.0
2 TraesCS7A01G329400 chr7A 98.457 324 5 0 3305 3628 39430226 39429903 4.470000e-159 571.0
3 TraesCS7A01G329400 chrUn 86.982 1521 140 31 1677 3165 255438373 255439867 0.000000e+00 1659.0
4 TraesCS7A01G329400 chrUn 86.458 1152 132 14 535 1676 255437294 255438431 0.000000e+00 1242.0
5 TraesCS7A01G329400 chrUn 94.167 360 21 0 3627 3986 318688715 318688356 2.090000e-152 549.0
6 TraesCS7A01G329400 chrUn 94.167 360 21 0 3627 3986 318693740 318694099 2.090000e-152 549.0
7 TraesCS7A01G329400 chrUn 94.167 360 21 0 3627 3986 331715335 331715694 2.090000e-152 549.0
8 TraesCS7A01G329400 chrUn 93.056 360 25 0 3627 3986 255439921 255440280 9.810000e-146 527.0
9 TraesCS7A01G329400 chrUn 89.894 188 13 2 3130 3312 318688895 318688709 1.850000e-58 237.0
10 TraesCS7A01G329400 chrUn 89.894 188 13 2 3130 3312 318693560 318693746 1.850000e-58 237.0
11 TraesCS7A01G329400 chrUn 89.894 188 13 2 3130 3312 331715155 331715341 1.850000e-58 237.0
12 TraesCS7A01G329400 chr2A 86.917 1521 140 33 1677 3165 361210883 361209390 0.000000e+00 1652.0
13 TraesCS7A01G329400 chr2A 87.714 993 107 8 687 1676 361211805 361210825 0.000000e+00 1144.0
14 TraesCS7A01G329400 chr2A 93.056 360 25 0 3627 3986 361209336 361208977 9.810000e-146 527.0
15 TraesCS7A01G329400 chr2A 90.281 391 33 4 2779 3165 361207491 361207102 1.280000e-139 507.0
16 TraesCS7A01G329400 chr2A 91.944 360 29 0 3627 3986 361207049 361206690 4.600000e-139 505.0
17 TraesCS7A01G329400 chr2A 94.444 324 18 0 3305 3628 132704672 132704349 2.140000e-137 499.0
18 TraesCS7A01G329400 chr2A 90.671 343 21 6 3295 3630 95604375 95604713 2.830000e-121 446.0
19 TraesCS7A01G329400 chr3D 89.942 1034 96 6 2281 3308 36245950 36244919 0.000000e+00 1327.0
20 TraesCS7A01G329400 chr3D 91.667 360 28 2 3627 3986 36244930 36244573 7.690000e-137 497.0
21 TraesCS7A01G329400 chr3D 80.846 449 65 15 90 517 408324525 408324973 2.300000e-87 333.0
22 TraesCS7A01G329400 chr3D 96.667 90 1 1 1 90 301475970 301475883 8.920000e-32 148.0
23 TraesCS7A01G329400 chr3D 96.667 90 1 1 1 90 337719286 337719199 8.920000e-32 148.0
24 TraesCS7A01G329400 chr6B 89.286 1064 80 16 2273 3308 440778907 440777850 0.000000e+00 1303.0
25 TraesCS7A01G329400 chr6B 80.085 236 27 17 287 507 133452322 133452552 1.480000e-34 158.0
26 TraesCS7A01G329400 chr6B 100.000 30 0 0 98 127 529348128 529348099 5.560000e-04 56.5
27 TraesCS7A01G329400 chr5D 87.794 934 95 9 605 1535 179648196 179649113 0.000000e+00 1075.0
28 TraesCS7A01G329400 chr5D 85.833 720 58 20 651 1367 140007078 140007756 0.000000e+00 725.0
29 TraesCS7A01G329400 chr5D 89.834 482 44 5 2575 3055 179650166 179650643 7.320000e-172 614.0
30 TraesCS7A01G329400 chr5D 88.767 365 30 7 2744 3104 140007795 140008152 1.700000e-118 436.0
31 TraesCS7A01G329400 chr5D 83.607 427 30 15 1869 2264 179649747 179650164 8.140000e-97 364.0
32 TraesCS7A01G329400 chr5D 96.667 90 1 1 1 90 297729537 297729624 8.920000e-32 148.0
33 TraesCS7A01G329400 chr5D 96.629 89 1 1 1 89 407084968 407085054 3.210000e-31 147.0
34 TraesCS7A01G329400 chr6A 89.169 794 58 15 2273 3046 402957093 402956308 0.000000e+00 965.0
35 TraesCS7A01G329400 chr6A 89.418 378 31 3 2936 3308 402956285 402955912 6.030000e-128 468.0
36 TraesCS7A01G329400 chr6A 94.286 35 2 0 90 124 401280296 401280330 2.000000e-03 54.7
37 TraesCS7A01G329400 chr5B 79.434 1556 164 74 90 1586 406400221 406401679 0.000000e+00 957.0
38 TraesCS7A01G329400 chr5B 85.356 717 64 19 654 1367 579527906 579527228 0.000000e+00 704.0
39 TraesCS7A01G329400 chr5B 85.467 578 46 19 2752 3316 406401710 406402262 5.780000e-158 568.0
40 TraesCS7A01G329400 chr5B 90.556 360 33 1 3627 3986 406402251 406402609 3.600000e-130 475.0
41 TraesCS7A01G329400 chr6D 89.204 741 54 7 2325 3046 278645157 278644424 0.000000e+00 902.0
42 TraesCS7A01G329400 chr6D 86.173 716 62 17 654 1367 16088547 16087867 0.000000e+00 739.0
43 TraesCS7A01G329400 chr6D 91.389 360 30 1 3627 3986 16086448 16086090 3.580000e-135 492.0
44 TraesCS7A01G329400 chr6D 84.615 377 31 6 2936 3308 278644401 278644048 2.280000e-92 350.0
45 TraesCS7A01G329400 chr6D 95.556 90 2 1 1 90 365943498 365943585 4.150000e-30 143.0
46 TraesCS7A01G329400 chr7B 85.495 717 63 18 654 1367 7021701 7021023 0.000000e+00 710.0
47 TraesCS7A01G329400 chr2B 85.475 716 64 13 654 1367 189609277 189608600 0.000000e+00 710.0
48 TraesCS7A01G329400 chr1B 85.495 717 63 19 654 1367 321716306 321715628 0.000000e+00 710.0
49 TraesCS7A01G329400 chr1B 84.697 660 60 18 711 1367 235387571 235386950 4.380000e-174 621.0
50 TraesCS7A01G329400 chr1B 88.646 229 19 1 1865 2093 491241519 491241740 5.080000e-69 272.0
51 TraesCS7A01G329400 chr1A 95.679 324 14 0 3305 3628 37395297 37394974 4.560000e-144 521.0
52 TraesCS7A01G329400 chr1A 94.393 321 17 1 3309 3628 314952069 314952389 3.580000e-135 492.0
53 TraesCS7A01G329400 chr1A 79.951 409 49 14 1865 2248 465504586 465504986 1.830000e-68 270.0
54 TraesCS7A01G329400 chr4A 95.679 324 13 1 3305 3628 610429784 610430106 1.640000e-143 520.0
55 TraesCS7A01G329400 chr4A 77.628 371 54 14 163 518 102995764 102996120 8.740000e-47 198.0
56 TraesCS7A01G329400 chr4A 90.909 110 8 1 3 112 247544761 247544868 3.210000e-31 147.0
57 TraesCS7A01G329400 chr5A 95.385 325 15 0 3305 3629 581490320 581490644 5.900000e-143 518.0
58 TraesCS7A01G329400 chr5A 86.404 228 23 5 1865 2091 5427621 5427401 3.980000e-60 243.0
59 TraesCS7A01G329400 chr5A 89.691 97 7 3 1582 1676 5427934 5427839 1.950000e-23 121.0
60 TraesCS7A01G329400 chr3A 94.260 331 11 3 3304 3629 198839437 198839110 2.140000e-137 499.0
61 TraesCS7A01G329400 chr3A 87.826 230 20 5 1865 2093 671349410 671349632 3.050000e-66 263.0
62 TraesCS7A01G329400 chr3A 89.691 97 7 3 1582 1676 671349096 671349191 1.950000e-23 121.0
63 TraesCS7A01G329400 chr4D 92.284 324 18 7 3304 3623 304362198 304361878 1.690000e-123 453.0
64 TraesCS7A01G329400 chr4D 95.604 91 2 1 1 91 368817183 368817095 1.150000e-30 145.0
65 TraesCS7A01G329400 chr2D 79.050 463 78 17 77 523 453862947 453863406 2.330000e-77 300.0
66 TraesCS7A01G329400 chr2D 73.036 471 75 33 90 523 439655707 439656162 7.000000e-23 119.0
67 TraesCS7A01G329400 chr2D 92.105 38 3 0 87 124 131376728 131376765 2.000000e-03 54.7
68 TraesCS7A01G329400 chr7D 78.060 433 60 23 108 523 27125484 27125898 1.430000e-59 241.0
69 TraesCS7A01G329400 chr7D 95.604 91 2 1 1 91 367805624 367805536 1.150000e-30 145.0
70 TraesCS7A01G329400 chr1D 96.667 90 1 1 1 90 255262012 255262099 8.920000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G329400 chr7A 479834600 479838585 3985 False 7361.000000 7361 100.000000 1 3986 1 chr7A.!!$F1 3985
1 TraesCS7A01G329400 chr7A 88932666 88935209 2543 True 3107.000000 3107 89.062000 627 3130 1 chr7A.!!$R2 2503
2 TraesCS7A01G329400 chrUn 255437294 255440280 2986 False 1142.666667 1659 88.832000 535 3986 3 chrUn.!!$F1 3451
3 TraesCS7A01G329400 chrUn 318688356 318688895 539 True 393.000000 549 92.030500 3130 3986 2 chrUn.!!$R1 856
4 TraesCS7A01G329400 chrUn 318693560 318694099 539 False 393.000000 549 92.030500 3130 3986 2 chrUn.!!$F2 856
5 TraesCS7A01G329400 chrUn 331715155 331715694 539 False 393.000000 549 92.030500 3130 3986 2 chrUn.!!$F3 856
6 TraesCS7A01G329400 chr2A 361206690 361211805 5115 True 867.000000 1652 89.982400 687 3986 5 chr2A.!!$R2 3299
7 TraesCS7A01G329400 chr3D 36244573 36245950 1377 True 912.000000 1327 90.804500 2281 3986 2 chr3D.!!$R3 1705
8 TraesCS7A01G329400 chr6B 440777850 440778907 1057 True 1303.000000 1303 89.286000 2273 3308 1 chr6B.!!$R1 1035
9 TraesCS7A01G329400 chr5D 179648196 179650643 2447 False 684.333333 1075 87.078333 605 3055 3 chr5D.!!$F4 2450
10 TraesCS7A01G329400 chr5D 140007078 140008152 1074 False 580.500000 725 87.300000 651 3104 2 chr5D.!!$F3 2453
11 TraesCS7A01G329400 chr6A 402955912 402957093 1181 True 716.500000 965 89.293500 2273 3308 2 chr6A.!!$R1 1035
12 TraesCS7A01G329400 chr5B 579527228 579527906 678 True 704.000000 704 85.356000 654 1367 1 chr5B.!!$R1 713
13 TraesCS7A01G329400 chr5B 406400221 406402609 2388 False 666.666667 957 85.152333 90 3986 3 chr5B.!!$F1 3896
14 TraesCS7A01G329400 chr6D 278644048 278645157 1109 True 626.000000 902 86.909500 2325 3308 2 chr6D.!!$R2 983
15 TraesCS7A01G329400 chr6D 16086090 16088547 2457 True 615.500000 739 88.781000 654 3986 2 chr6D.!!$R1 3332
16 TraesCS7A01G329400 chr7B 7021023 7021701 678 True 710.000000 710 85.495000 654 1367 1 chr7B.!!$R1 713
17 TraesCS7A01G329400 chr2B 189608600 189609277 677 True 710.000000 710 85.475000 654 1367 1 chr2B.!!$R1 713
18 TraesCS7A01G329400 chr1B 321715628 321716306 678 True 710.000000 710 85.495000 654 1367 1 chr1B.!!$R2 713
19 TraesCS7A01G329400 chr1B 235386950 235387571 621 True 621.000000 621 84.697000 711 1367 1 chr1B.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
507 566 0.179094 GGACTTGACCGACACACACA 60.179 55.0 0.0 0.0 0.0 3.72 F
1035 1146 0.040499 ACTCTCGCCTTCTCCTCCTT 59.960 55.0 0.0 0.0 0.0 3.36 F
1577 1698 0.108424 TTTGGTGTTGGTGTTGCTGC 60.108 50.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1558 1679 0.108424 GCAGCAACACCAACACCAAA 60.108 50.0 0.0 0.0 0.00 3.28 R
2031 2605 0.609662 ATGATTGGTTGGCAGTTGGC 59.390 50.0 0.0 0.0 43.74 4.52 R
3320 5053 0.030101 AACATTCCCGCAACAACGTG 59.970 50.0 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 8.996024 AGTTTTATGTTAAAGTTTGTTGCTGT 57.004 26.923 0.00 0.00 0.00 4.40
80 81 9.430623 AGTTTTATGTTAAAGTTTGTTGCTGTT 57.569 25.926 0.00 0.00 0.00 3.16
136 139 4.819088 ACGGGCAAAAATTTAAACATGCTT 59.181 33.333 12.95 0.00 34.37 3.91
137 140 5.298026 ACGGGCAAAAATTTAAACATGCTTT 59.702 32.000 12.95 0.00 34.37 3.51
139 142 6.794636 CGGGCAAAAATTTAAACATGCTTTAC 59.205 34.615 12.95 1.60 34.37 2.01
140 143 7.519008 CGGGCAAAAATTTAAACATGCTTTACA 60.519 33.333 12.95 0.00 34.37 2.41
150 153 1.819928 ATGCTTTACATGGCGTCACA 58.180 45.000 0.00 0.00 37.70 3.58
157 160 0.463654 ACATGGCGTCACACAACACT 60.464 50.000 0.00 0.00 0.00 3.55
166 169 6.146898 GGCGTCACACAACACTTTTTATATT 58.853 36.000 0.00 0.00 0.00 1.28
167 170 6.304683 GGCGTCACACAACACTTTTTATATTC 59.695 38.462 0.00 0.00 0.00 1.75
199 202 9.533253 TGGCTAACGTTAGAAATAAGGTTATAC 57.467 33.333 33.89 13.68 38.65 1.47
213 222 9.826574 AATAAGGTTATACTAGCATTTTCGACA 57.173 29.630 0.00 0.00 0.00 4.35
227 236 6.504180 GCATTTTCGACAATAAAATTCGGACG 60.504 38.462 0.00 0.00 35.00 4.79
228 237 3.644805 TCGACAATAAAATTCGGACGC 57.355 42.857 0.00 0.00 33.50 5.19
232 241 3.739494 ACAATAAAATTCGGACGCGAAC 58.261 40.909 15.93 6.28 0.00 3.95
236 245 1.223187 AAATTCGGACGCGAACAAGT 58.777 45.000 15.93 0.00 0.00 3.16
237 246 0.511221 AATTCGGACGCGAACAAGTG 59.489 50.000 15.93 0.00 0.00 3.16
245 254 1.001633 ACGCGAACAAGTGACCCTAAT 59.998 47.619 15.93 0.00 0.00 1.73
247 256 2.695359 GCGAACAAGTGACCCTAATGA 58.305 47.619 0.00 0.00 0.00 2.57
250 259 4.253685 CGAACAAGTGACCCTAATGACAT 58.746 43.478 0.00 0.00 0.00 3.06
252 261 5.181245 CGAACAAGTGACCCTAATGACATTT 59.819 40.000 5.89 0.00 0.00 2.32
274 283 3.132289 TGTCAGGACCTAATTTAGCTCCG 59.868 47.826 10.72 7.36 36.00 4.63
275 284 3.132467 GTCAGGACCTAATTTAGCTCCGT 59.868 47.826 10.72 0.00 36.00 4.69
277 286 4.340381 TCAGGACCTAATTTAGCTCCGTAC 59.660 45.833 10.72 0.11 36.00 3.67
281 290 6.070366 AGGACCTAATTTAGCTCCGTACTTTT 60.070 38.462 10.72 0.00 36.00 2.27
284 293 8.658499 ACCTAATTTAGCTCCGTACTTTTATG 57.342 34.615 0.00 0.00 0.00 1.90
289 298 7.534085 TTTAGCTCCGTACTTTTATGTGATG 57.466 36.000 0.00 0.00 0.00 3.07
293 302 6.313905 AGCTCCGTACTTTTATGTGATGAAAG 59.686 38.462 0.00 0.00 40.49 2.62
299 308 9.355215 CGTACTTTTATGTGATGAAAGAGTAGT 57.645 33.333 7.59 0.00 37.89 2.73
308 317 5.409520 GTGATGAAAGAGTAGTTGTGCATGA 59.590 40.000 0.00 0.00 0.00 3.07
313 322 8.389779 TGAAAGAGTAGTTGTGCATGAAATAA 57.610 30.769 0.00 0.00 0.00 1.40
507 566 0.179094 GGACTTGACCGACACACACA 60.179 55.000 0.00 0.00 0.00 3.72
508 567 1.540363 GGACTTGACCGACACACACAT 60.540 52.381 0.00 0.00 0.00 3.21
509 568 2.288579 GGACTTGACCGACACACACATA 60.289 50.000 0.00 0.00 0.00 2.29
510 569 2.729882 GACTTGACCGACACACACATAC 59.270 50.000 0.00 0.00 0.00 2.39
511 570 2.101750 ACTTGACCGACACACACATACA 59.898 45.455 0.00 0.00 0.00 2.29
512 571 2.143008 TGACCGACACACACATACAC 57.857 50.000 0.00 0.00 0.00 2.90
513 572 1.409427 TGACCGACACACACATACACA 59.591 47.619 0.00 0.00 0.00 3.72
514 573 2.159085 TGACCGACACACACATACACAA 60.159 45.455 0.00 0.00 0.00 3.33
515 574 2.206750 ACCGACACACACATACACAAC 58.793 47.619 0.00 0.00 0.00 3.32
516 575 2.205911 CCGACACACACATACACAACA 58.794 47.619 0.00 0.00 0.00 3.33
517 576 2.033236 CCGACACACACATACACAACAC 60.033 50.000 0.00 0.00 0.00 3.32
518 577 2.347200 CGACACACACATACACAACACG 60.347 50.000 0.00 0.00 0.00 4.49
519 578 2.605818 GACACACACATACACAACACGT 59.394 45.455 0.00 0.00 0.00 4.49
520 579 3.783191 ACACACACATACACAACACGTA 58.217 40.909 0.00 0.00 0.00 3.57
521 580 3.552699 ACACACACATACACAACACGTAC 59.447 43.478 0.00 0.00 0.00 3.67
522 581 3.799963 CACACACATACACAACACGTACT 59.200 43.478 0.00 0.00 0.00 2.73
523 582 3.799963 ACACACATACACAACACGTACTG 59.200 43.478 0.00 0.00 0.00 2.74
524 583 3.183574 CACACATACACAACACGTACTGG 59.816 47.826 0.00 0.00 0.00 4.00
525 584 2.156891 CACATACACAACACGTACTGGC 59.843 50.000 0.00 0.00 0.00 4.85
526 585 1.730064 CATACACAACACGTACTGGCC 59.270 52.381 0.00 0.00 0.00 5.36
527 586 1.042229 TACACAACACGTACTGGCCT 58.958 50.000 3.32 0.00 0.00 5.19
528 587 1.042229 ACACAACACGTACTGGCCTA 58.958 50.000 3.32 0.00 0.00 3.93
529 588 1.413445 ACACAACACGTACTGGCCTAA 59.587 47.619 3.32 0.00 0.00 2.69
530 589 2.158928 ACACAACACGTACTGGCCTAAA 60.159 45.455 3.32 0.00 0.00 1.85
531 590 2.873472 CACAACACGTACTGGCCTAAAA 59.127 45.455 3.32 0.00 0.00 1.52
532 591 3.312973 CACAACACGTACTGGCCTAAAAA 59.687 43.478 3.32 0.00 0.00 1.94
555 614 5.548706 ACATACAACACGTACTCTCTCTC 57.451 43.478 0.00 0.00 31.27 3.20
557 616 6.404708 ACATACAACACGTACTCTCTCTCTA 58.595 40.000 0.00 0.00 31.27 2.43
559 618 7.553402 ACATACAACACGTACTCTCTCTCTATT 59.447 37.037 0.00 0.00 31.27 1.73
620 696 1.685180 GCACCCCTTTCTATTCCCCAC 60.685 57.143 0.00 0.00 0.00 4.61
649 728 2.632996 CACTTCTCCCTAGTGGACAACA 59.367 50.000 0.00 0.00 38.61 3.33
658 737 3.798511 TGGACAACACCACCGCCA 61.799 61.111 0.00 0.00 34.77 5.69
681 760 2.164624 CTCCCATCTTCTCGTCGTTCTT 59.835 50.000 0.00 0.00 0.00 2.52
778 857 1.557269 AATCTTGCGTGGCTCCCTCT 61.557 55.000 0.00 0.00 0.00 3.69
798 877 0.326595 TTATTTCAGCTCCACCCGCA 59.673 50.000 0.00 0.00 0.00 5.69
837 939 0.763652 TCCTCTCCGACGCCTATAGT 59.236 55.000 0.00 0.00 0.00 2.12
847 949 0.753262 CGCCTATAGTGCCTCCTTGT 59.247 55.000 0.00 0.00 0.00 3.16
893 1001 2.531483 TAGAGGAGGTGTGGGAGGCC 62.531 65.000 0.00 0.00 0.00 5.19
896 1004 3.721706 GAGGTGTGGGAGGCCCTG 61.722 72.222 0.00 0.00 45.70 4.45
899 1007 4.416738 GTGTGGGAGGCCCTGCTC 62.417 72.222 1.05 0.00 45.70 4.26
969 1077 2.283532 AGACGGCTCCACTGCTCT 60.284 61.111 0.00 0.00 0.00 4.09
1035 1146 0.040499 ACTCTCGCCTTCTCCTCCTT 59.960 55.000 0.00 0.00 0.00 3.36
1062 1173 2.048222 GTACCGCACTGCAGCAGA 60.048 61.111 29.70 1.74 35.18 4.26
1063 1174 1.667830 GTACCGCACTGCAGCAGAA 60.668 57.895 29.70 4.02 35.18 3.02
1066 1177 1.359833 CCGCACTGCAGCAGAAAAA 59.640 52.632 29.70 0.00 35.18 1.94
1083 1194 9.401058 AGCAGAAAAATTAGTACTAATCTGCAT 57.599 29.630 38.88 29.75 46.41 3.96
1098 1209 8.887717 ACTAATCTGCATGAAAGATTACTGAAC 58.112 33.333 19.58 0.00 41.49 3.18
1103 1214 9.283768 TCTGCATGAAAGATTACTGAACTTAAA 57.716 29.630 0.00 0.00 0.00 1.52
1120 1231 4.772100 ACTTAAACTGGGCAATAACATGCT 59.228 37.500 0.00 0.00 45.68 3.79
1131 1250 4.787563 GCAATAACATGCTCTCGTCCATTG 60.788 45.833 0.00 0.00 43.06 2.82
1145 1264 4.033932 TCGTCCATTGACATTTTAGATGCG 59.966 41.667 0.00 0.00 41.85 4.73
1167 1286 5.535333 CGAAGTTTAGGACTAACTGAACCA 58.465 41.667 0.00 0.00 37.60 3.67
1207 1326 1.813178 GGCAAGGAACTGGTTAGAAGC 59.187 52.381 0.00 0.00 40.86 3.86
1212 1331 4.706842 AGGAACTGGTTAGAAGCTTCAA 57.293 40.909 27.57 16.39 37.18 2.69
1228 1347 9.077885 AGAAGCTTCAATTATGTAACTTTTGGA 57.922 29.630 27.57 0.00 0.00 3.53
1288 1407 2.111384 CACCTGTCCCTAGTAGCACAT 58.889 52.381 0.00 0.00 0.00 3.21
1291 1410 4.345257 CACCTGTCCCTAGTAGCACATAAT 59.655 45.833 0.00 0.00 0.00 1.28
1349 1469 9.453572 TTTCTGAATAAAATGCAGAGTGTAGAT 57.546 29.630 0.00 0.00 39.56 1.98
1384 1504 3.898529 AGAGAGGACGAAACTTGTTACG 58.101 45.455 0.00 0.00 0.00 3.18
1411 1531 0.890996 GGCTGGGTGTCTCCTGTTTG 60.891 60.000 0.00 0.00 36.25 2.93
1421 1541 5.297547 GTGTCTCCTGTTTGTTCATAGTCA 58.702 41.667 0.00 0.00 0.00 3.41
1430 1550 9.770097 CCTGTTTGTTCATAGTCATAGATGTAT 57.230 33.333 0.00 0.00 0.00 2.29
1456 1576 3.568007 TCATTCTGGTTACTTGTTGCCAC 59.432 43.478 0.00 0.00 0.00 5.01
1482 1602 2.351726 AGAAATAACATGCCTTCGTCGC 59.648 45.455 0.00 0.00 0.00 5.19
1550 1671 1.350351 AGCTGCAGTTGGAGTTGATCT 59.650 47.619 16.64 0.00 35.78 2.75
1558 1679 3.580458 AGTTGGAGTTGATCTAGCTGTGT 59.420 43.478 0.00 0.00 28.59 3.72
1571 1692 0.530288 GCTGTGTTTGGTGTTGGTGT 59.470 50.000 0.00 0.00 0.00 4.16
1577 1698 0.108424 TTTGGTGTTGGTGTTGCTGC 60.108 50.000 0.00 0.00 0.00 5.25
1604 1733 3.897239 TCGTTCCTTGGCATCCATTAAT 58.103 40.909 0.00 0.00 31.53 1.40
1635 1764 0.389426 CTCAAATGGCTTGCCTGCAC 60.389 55.000 13.18 0.00 34.76 4.57
1658 1789 6.797033 CACGAGTTTTGGAATGTGTAAGAATC 59.203 38.462 0.00 0.00 0.00 2.52
1660 1791 7.876068 ACGAGTTTTGGAATGTGTAAGAATCTA 59.124 33.333 0.00 0.00 0.00 1.98
1690 1821 8.729805 TTAATAAAAATAAATGGCTTGCCTGG 57.270 30.769 13.18 0.00 0.00 4.45
1773 2038 7.041780 AGGATCGATAAATGTATCAGCAACAAC 60.042 37.037 0.00 0.00 36.65 3.32
1775 2040 5.579119 TCGATAAATGTATCAGCAACAACGT 59.421 36.000 3.79 0.00 36.65 3.99
1790 2055 7.640630 CAGCAACAACGTTTAGTGTGTTATTTA 59.359 33.333 0.00 0.00 34.63 1.40
1791 2056 8.182881 AGCAACAACGTTTAGTGTGTTATTTAA 58.817 29.630 0.00 0.00 34.63 1.52
1845 2300 0.390866 ATCAGCACAGGTCTTGAGCG 60.391 55.000 0.00 0.00 46.44 5.03
1852 2424 0.795085 CAGGTCTTGAGCGCTTGAAG 59.205 55.000 13.26 17.14 0.00 3.02
1901 2473 8.134202 ACCGATGAACCATGTGATATCTAATA 57.866 34.615 3.98 0.00 0.00 0.98
1998 2572 6.170846 TCTATCATTGCATCACAGACTGAT 57.829 37.500 10.08 0.00 40.59 2.90
2001 2575 8.373220 TCTATCATTGCATCACAGACTGATAAT 58.627 33.333 10.08 0.00 37.53 1.28
2031 2605 9.457110 GATGAAGAACTATGTAGTGTCTATGTG 57.543 37.037 0.00 0.00 36.50 3.21
2032 2606 7.258441 TGAAGAACTATGTAGTGTCTATGTGC 58.742 38.462 0.00 0.00 36.50 4.57
2033 2607 6.150396 AGAACTATGTAGTGTCTATGTGCC 57.850 41.667 0.00 0.00 36.50 5.01
2034 2608 5.656859 AGAACTATGTAGTGTCTATGTGCCA 59.343 40.000 0.00 0.00 36.50 4.92
2035 2609 5.932619 ACTATGTAGTGTCTATGTGCCAA 57.067 39.130 0.00 0.00 34.72 4.52
2036 2610 5.661458 ACTATGTAGTGTCTATGTGCCAAC 58.339 41.667 0.00 0.00 34.72 3.77
2037 2611 4.826274 ATGTAGTGTCTATGTGCCAACT 57.174 40.909 0.00 0.00 0.00 3.16
2085 2661 4.518970 TGGTATCTTTTTGGTGAACTCTGC 59.481 41.667 0.00 0.00 0.00 4.26
2086 2662 3.904136 ATCTTTTTGGTGAACTCTGCG 57.096 42.857 0.00 0.00 0.00 5.18
2087 2663 1.946768 TCTTTTTGGTGAACTCTGCGG 59.053 47.619 0.00 0.00 0.00 5.69
2093 2696 1.879380 TGGTGAACTCTGCGGAAATTG 59.121 47.619 0.00 0.00 0.00 2.32
2094 2697 2.151202 GGTGAACTCTGCGGAAATTGA 58.849 47.619 0.00 0.00 0.00 2.57
2140 2743 4.434713 TCTGCGGAAATTTTAAGCTTCC 57.565 40.909 0.00 0.00 36.12 3.46
2169 2772 8.477256 TCATTTCCACTGTTTTCTTCAAAAGAT 58.523 29.630 0.00 0.00 37.38 2.40
2205 2810 8.135382 TGTCTTCTAGTAGCTCCTTTAAATGT 57.865 34.615 0.00 0.00 0.00 2.71
2342 2953 4.827789 AGTACCTCTATGCCCTATTTGGA 58.172 43.478 0.00 0.00 38.35 3.53
2429 3040 6.152661 TCGTTTCATAATTTTTGCTCCCAGAT 59.847 34.615 0.00 0.00 0.00 2.90
2479 3090 4.940654 TGTGAAGTCTGATGTTGTTGTGAA 59.059 37.500 0.00 0.00 0.00 3.18
2494 3105 6.499234 TGTTGTGAACTACATCCATCATTG 57.501 37.500 0.00 0.00 39.48 2.82
2496 3107 6.149308 TGTTGTGAACTACATCCATCATTGTC 59.851 38.462 0.00 0.00 39.48 3.18
2519 3130 7.776618 TCTCTCCACTTAGAGATAAACACAA 57.223 36.000 0.00 0.00 45.54 3.33
2658 3278 3.554934 TGCCATTGTCCATTCTCATACC 58.445 45.455 0.00 0.00 0.00 2.73
2707 3327 4.081406 TCTCGGTGGCTACAAAAGTACTA 58.919 43.478 1.52 0.00 0.00 1.82
2764 3384 6.127281 TGTTGTCAGGGCTTTTATCGTATCTA 60.127 38.462 0.00 0.00 0.00 1.98
2789 3409 0.034670 ATGAAACCTGAGGAGGCTGC 60.035 55.000 4.99 0.00 44.33 5.25
2793 3413 2.121992 AACCTGAGGAGGCTGCTGTG 62.122 60.000 15.18 5.54 44.33 3.66
2831 3451 6.841229 TCTCTACCAGATGAAGTTGTGGATAT 59.159 38.462 0.00 0.00 33.95 1.63
2837 3457 8.109634 ACCAGATGAAGTTGTGGATATAGTTTT 58.890 33.333 0.00 0.00 33.95 2.43
2934 4522 8.498054 AACTTATCAAGGTGATGTATGTCTTG 57.502 34.615 0.94 0.00 37.70 3.02
2943 4531 8.297470 AGGTGATGTATGTCTTGCAAATATTT 57.703 30.769 0.00 0.00 0.00 1.40
2992 4581 3.998341 GCAAATGCAACCATGATCTTGTT 59.002 39.130 7.73 0.00 41.59 2.83
3030 4749 5.046878 TCACATTGGTCGTACTTCTGGTAAT 60.047 40.000 0.00 0.00 31.56 1.89
3031 4750 5.642063 CACATTGGTCGTACTTCTGGTAATT 59.358 40.000 0.00 0.00 31.56 1.40
3037 4757 8.931385 TGGTCGTACTTCTGGTAATTTAATAC 57.069 34.615 0.00 0.00 31.56 1.89
3062 4782 1.985159 TGGGGCATGTAGTCACTCTTT 59.015 47.619 0.00 0.00 0.00 2.52
3138 4862 4.584874 TGTCTAACACCCCATGTAACATG 58.415 43.478 0.00 0.00 42.31 3.21
3143 4867 1.031571 ACCCCATGTAACATGCGCTG 61.032 55.000 9.73 7.16 0.00 5.18
3147 4871 1.003545 CCATGTAACATGCGCTGCTAC 60.004 52.381 9.73 10.70 0.00 3.58
3247 4971 3.638160 GCATTTCATGGATTGGGAAGCTA 59.362 43.478 0.00 0.00 0.00 3.32
3300 5033 4.650972 ACTCTTGGTAACCCTGCATTTA 57.349 40.909 0.00 0.00 0.00 1.40
3305 5038 5.417580 TCTTGGTAACCCTGCATTTATGAAC 59.582 40.000 0.00 0.00 0.00 3.18
3306 5039 4.929479 TGGTAACCCTGCATTTATGAACT 58.071 39.130 0.00 0.00 0.00 3.01
3307 5040 6.068461 TGGTAACCCTGCATTTATGAACTA 57.932 37.500 0.00 0.00 0.00 2.24
3308 5041 6.119536 TGGTAACCCTGCATTTATGAACTAG 58.880 40.000 0.00 0.00 0.00 2.57
3309 5042 6.069905 TGGTAACCCTGCATTTATGAACTAGA 60.070 38.462 0.00 0.00 0.00 2.43
3310 5043 6.998673 GGTAACCCTGCATTTATGAACTAGAT 59.001 38.462 0.00 0.00 0.00 1.98
3311 5044 6.949352 AACCCTGCATTTATGAACTAGATG 57.051 37.500 0.00 0.00 0.00 2.90
3312 5045 6.252599 ACCCTGCATTTATGAACTAGATGA 57.747 37.500 0.00 0.00 0.00 2.92
3313 5046 6.845908 ACCCTGCATTTATGAACTAGATGAT 58.154 36.000 0.00 0.00 0.00 2.45
3314 5047 7.977818 ACCCTGCATTTATGAACTAGATGATA 58.022 34.615 0.00 0.00 0.00 2.15
3315 5048 7.880195 ACCCTGCATTTATGAACTAGATGATAC 59.120 37.037 0.00 0.00 0.00 2.24
3316 5049 7.335422 CCCTGCATTTATGAACTAGATGATACC 59.665 40.741 0.00 0.00 0.00 2.73
3317 5050 7.335422 CCTGCATTTATGAACTAGATGATACCC 59.665 40.741 0.00 0.00 0.00 3.69
3318 5051 7.168219 TGCATTTATGAACTAGATGATACCCC 58.832 38.462 0.00 0.00 0.00 4.95
3319 5052 6.313905 GCATTTATGAACTAGATGATACCCCG 59.686 42.308 0.00 0.00 0.00 5.73
3320 5053 3.963428 ATGAACTAGATGATACCCCGC 57.037 47.619 0.00 0.00 0.00 6.13
3321 5054 2.673258 TGAACTAGATGATACCCCGCA 58.327 47.619 0.00 0.00 0.00 5.69
3322 5055 2.364324 TGAACTAGATGATACCCCGCAC 59.636 50.000 0.00 0.00 0.00 5.34
3323 5056 0.959553 ACTAGATGATACCCCGCACG 59.040 55.000 0.00 0.00 0.00 5.34
3324 5057 0.959553 CTAGATGATACCCCGCACGT 59.040 55.000 0.00 0.00 0.00 4.49
3325 5058 1.340248 CTAGATGATACCCCGCACGTT 59.660 52.381 0.00 0.00 0.00 3.99
3326 5059 0.179084 AGATGATACCCCGCACGTTG 60.179 55.000 0.00 0.00 0.00 4.10
3327 5060 0.461339 GATGATACCCCGCACGTTGT 60.461 55.000 0.00 0.00 0.00 3.32
3328 5061 0.035820 ATGATACCCCGCACGTTGTT 60.036 50.000 0.00 0.00 0.00 2.83
3329 5062 0.951525 TGATACCCCGCACGTTGTTG 60.952 55.000 0.00 0.00 0.00 3.33
3330 5063 2.248274 GATACCCCGCACGTTGTTGC 62.248 60.000 0.00 0.00 39.28 4.17
3336 5069 2.642700 GCACGTTGTTGCGGGAAT 59.357 55.556 0.00 0.00 37.48 3.01
3337 5070 1.729131 GCACGTTGTTGCGGGAATG 60.729 57.895 0.00 0.00 37.48 2.67
3338 5071 1.652012 CACGTTGTTGCGGGAATGT 59.348 52.632 0.00 0.00 37.48 2.71
3339 5072 0.030101 CACGTTGTTGCGGGAATGTT 59.970 50.000 0.00 0.00 37.48 2.71
3340 5073 0.741915 ACGTTGTTGCGGGAATGTTT 59.258 45.000 0.00 0.00 35.98 2.83
3341 5074 1.135333 ACGTTGTTGCGGGAATGTTTT 59.865 42.857 0.00 0.00 35.98 2.43
3342 5075 1.520590 CGTTGTTGCGGGAATGTTTTG 59.479 47.619 0.00 0.00 0.00 2.44
3343 5076 1.260297 GTTGTTGCGGGAATGTTTTGC 59.740 47.619 0.00 0.00 0.00 3.68
3344 5077 0.461548 TGTTGCGGGAATGTTTTGCA 59.538 45.000 0.00 0.00 0.00 4.08
3345 5078 1.134699 TGTTGCGGGAATGTTTTGCAA 60.135 42.857 0.00 0.00 42.68 4.08
3346 5079 2.142319 GTTGCGGGAATGTTTTGCAAT 58.858 42.857 0.00 0.00 45.95 3.56
3347 5080 3.243873 TGTTGCGGGAATGTTTTGCAATA 60.244 39.130 0.00 0.00 45.95 1.90
3348 5081 3.883830 TGCGGGAATGTTTTGCAATAT 57.116 38.095 0.00 0.00 31.69 1.28
3349 5082 4.991153 TGCGGGAATGTTTTGCAATATA 57.009 36.364 0.00 0.00 31.69 0.86
3350 5083 5.528043 TGCGGGAATGTTTTGCAATATAT 57.472 34.783 0.00 0.00 31.69 0.86
3351 5084 5.911752 TGCGGGAATGTTTTGCAATATATT 58.088 33.333 10.74 10.74 31.69 1.28
3352 5085 5.982516 TGCGGGAATGTTTTGCAATATATTC 59.017 36.000 22.39 22.39 31.69 1.75
3353 5086 5.982516 GCGGGAATGTTTTGCAATATATTCA 59.017 36.000 27.57 9.89 0.00 2.57
3354 5087 6.144402 GCGGGAATGTTTTGCAATATATTCAG 59.856 38.462 27.57 23.01 0.00 3.02
3355 5088 7.202526 CGGGAATGTTTTGCAATATATTCAGT 58.797 34.615 27.57 8.97 0.00 3.41
3356 5089 7.706179 CGGGAATGTTTTGCAATATATTCAGTT 59.294 33.333 27.57 5.72 0.00 3.16
3367 5100 8.773645 TGCAATATATTCAGTTAGAATTGGTCG 58.226 33.333 0.00 0.00 44.48 4.79
3368 5101 8.774586 GCAATATATTCAGTTAGAATTGGTCGT 58.225 33.333 0.00 0.00 44.48 4.34
3372 5105 8.833231 ATATTCAGTTAGAATTGGTCGTATGG 57.167 34.615 0.00 0.00 44.48 2.74
3373 5106 5.925506 TCAGTTAGAATTGGTCGTATGGA 57.074 39.130 0.00 0.00 0.00 3.41
3374 5107 6.288941 TCAGTTAGAATTGGTCGTATGGAA 57.711 37.500 0.00 0.00 0.00 3.53
3375 5108 6.103997 TCAGTTAGAATTGGTCGTATGGAAC 58.896 40.000 0.00 0.00 0.00 3.62
3432 5165 9.590451 AGCTGAAAATAAATATGATTTGTGGTG 57.410 29.630 0.00 0.00 0.00 4.17
3433 5166 8.330302 GCTGAAAATAAATATGATTTGTGGTGC 58.670 33.333 0.00 0.00 0.00 5.01
3434 5167 9.590451 CTGAAAATAAATATGATTTGTGGTGCT 57.410 29.630 0.00 0.00 0.00 4.40
3435 5168 9.941325 TGAAAATAAATATGATTTGTGGTGCTT 57.059 25.926 0.00 0.00 0.00 3.91
3437 5170 9.941325 AAAATAAATATGATTTGTGGTGCTTGA 57.059 25.926 0.00 0.00 0.00 3.02
3443 5176 9.537192 AATATGATTTGTGGTGCTTGATTATTG 57.463 29.630 0.00 0.00 0.00 1.90
3444 5177 6.343716 TGATTTGTGGTGCTTGATTATTGT 57.656 33.333 0.00 0.00 0.00 2.71
3445 5178 7.459795 TGATTTGTGGTGCTTGATTATTGTA 57.540 32.000 0.00 0.00 0.00 2.41
3446 5179 8.065473 TGATTTGTGGTGCTTGATTATTGTAT 57.935 30.769 0.00 0.00 0.00 2.29
3447 5180 9.183368 TGATTTGTGGTGCTTGATTATTGTATA 57.817 29.630 0.00 0.00 0.00 1.47
3450 5183 9.800433 TTTGTGGTGCTTGATTATTGTATAATG 57.200 29.630 0.00 0.00 0.00 1.90
3451 5184 8.518430 TGTGGTGCTTGATTATTGTATAATGT 57.482 30.769 0.00 0.00 0.00 2.71
3452 5185 9.620259 TGTGGTGCTTGATTATTGTATAATGTA 57.380 29.630 0.00 0.00 0.00 2.29
3490 5223 9.793252 AGAATGTAAATTCTCATGCATGTTTAC 57.207 29.630 27.47 27.47 36.20 2.01
3491 5224 9.571810 GAATGTAAATTCTCATGCATGTTTACA 57.428 29.630 32.98 32.98 42.57 2.41
3504 5237 5.452078 CATGTTTACATGTTGAGGTGGTT 57.548 39.130 2.30 0.00 46.40 3.67
3505 5238 5.841810 CATGTTTACATGTTGAGGTGGTTT 58.158 37.500 2.30 0.00 46.40 3.27
3506 5239 5.923733 TGTTTACATGTTGAGGTGGTTTT 57.076 34.783 2.30 0.00 0.00 2.43
3507 5240 6.287589 TGTTTACATGTTGAGGTGGTTTTT 57.712 33.333 2.30 0.00 0.00 1.94
3535 5268 1.996898 CATGATTGCATGTTGTGGTGC 59.003 47.619 0.00 0.00 45.41 5.01
3538 5271 3.127451 TGCATGTTGTGGTGCACC 58.873 55.556 29.67 29.67 45.60 5.01
3539 5272 1.455402 TGCATGTTGTGGTGCACCT 60.455 52.632 34.75 12.54 45.60 4.00
3540 5273 1.042003 TGCATGTTGTGGTGCACCTT 61.042 50.000 34.75 11.22 45.60 3.50
3541 5274 0.318955 GCATGTTGTGGTGCACCTTC 60.319 55.000 34.75 26.27 40.94 3.46
3542 5275 0.314935 CATGTTGTGGTGCACCTTCC 59.685 55.000 34.75 22.51 36.82 3.46
3543 5276 0.185901 ATGTTGTGGTGCACCTTCCT 59.814 50.000 34.75 13.15 36.82 3.36
3544 5277 0.465460 TGTTGTGGTGCACCTTCCTC 60.465 55.000 34.75 20.79 36.82 3.71
3545 5278 1.150536 TTGTGGTGCACCTTCCTCC 59.849 57.895 34.75 16.22 36.82 4.30
3546 5279 1.640593 TTGTGGTGCACCTTCCTCCA 61.641 55.000 34.75 18.38 36.82 3.86
3547 5280 1.380302 GTGGTGCACCTTCCTCCAT 59.620 57.895 34.75 0.00 36.82 3.41
3548 5281 0.962356 GTGGTGCACCTTCCTCCATG 60.962 60.000 34.75 0.00 36.82 3.66
3549 5282 2.048603 GGTGCACCTTCCTCCATGC 61.049 63.158 29.12 0.00 38.59 4.06
3550 5283 1.303561 GTGCACCTTCCTCCATGCA 60.304 57.895 5.22 0.00 45.45 3.96
3551 5284 1.693034 TGCACCTTCCTCCATGCAT 59.307 52.632 0.00 0.00 42.92 3.96
3552 5285 0.681887 TGCACCTTCCTCCATGCATG 60.682 55.000 20.19 20.19 42.92 4.06
3553 5286 0.682209 GCACCTTCCTCCATGCATGT 60.682 55.000 24.58 0.95 38.00 3.21
3554 5287 1.843368 CACCTTCCTCCATGCATGTT 58.157 50.000 24.58 0.00 0.00 2.71
3555 5288 1.475280 CACCTTCCTCCATGCATGTTG 59.525 52.381 24.58 15.92 0.00 3.33
3556 5289 1.355381 ACCTTCCTCCATGCATGTTGA 59.645 47.619 24.58 14.65 0.00 3.18
3557 5290 2.225091 ACCTTCCTCCATGCATGTTGAA 60.225 45.455 24.58 20.04 0.00 2.69
3558 5291 3.028850 CCTTCCTCCATGCATGTTGAAT 58.971 45.455 24.58 0.00 0.00 2.57
3559 5292 3.181479 CCTTCCTCCATGCATGTTGAATG 60.181 47.826 24.58 15.47 33.06 2.67
3560 5293 3.369242 TCCTCCATGCATGTTGAATGA 57.631 42.857 24.58 12.58 35.34 2.57
3561 5294 3.905968 TCCTCCATGCATGTTGAATGAT 58.094 40.909 24.58 0.00 35.34 2.45
3562 5295 3.634910 TCCTCCATGCATGTTGAATGATG 59.365 43.478 24.58 10.76 35.34 3.07
3563 5296 3.634910 CCTCCATGCATGTTGAATGATGA 59.365 43.478 24.58 10.55 35.34 2.92
3564 5297 4.261614 CCTCCATGCATGTTGAATGATGAG 60.262 45.833 24.58 18.27 35.34 2.90
3565 5298 3.634910 TCCATGCATGTTGAATGATGAGG 59.365 43.478 24.58 5.28 35.34 3.86
3566 5299 3.383505 CCATGCATGTTGAATGATGAGGT 59.616 43.478 24.58 0.00 35.34 3.85
3567 5300 4.359706 CATGCATGTTGAATGATGAGGTG 58.640 43.478 18.91 0.00 35.34 4.00
3568 5301 2.756207 TGCATGTTGAATGATGAGGTGG 59.244 45.455 0.00 0.00 0.00 4.61
3569 5302 2.480759 GCATGTTGAATGATGAGGTGGC 60.481 50.000 0.00 0.00 0.00 5.01
3570 5303 2.583024 TGTTGAATGATGAGGTGGCA 57.417 45.000 0.00 0.00 0.00 4.92
3571 5304 3.090210 TGTTGAATGATGAGGTGGCAT 57.910 42.857 0.00 0.00 0.00 4.40
3572 5305 4.233632 TGTTGAATGATGAGGTGGCATA 57.766 40.909 0.00 0.00 0.00 3.14
3573 5306 3.947196 TGTTGAATGATGAGGTGGCATAC 59.053 43.478 0.00 0.00 0.00 2.39
3574 5307 4.202441 GTTGAATGATGAGGTGGCATACT 58.798 43.478 0.00 0.00 0.00 2.12
3575 5308 4.508551 TGAATGATGAGGTGGCATACTT 57.491 40.909 0.00 0.00 0.00 2.24
3576 5309 4.201657 TGAATGATGAGGTGGCATACTTG 58.798 43.478 0.00 0.00 0.00 3.16
3594 5327 7.637229 CATACTTGCATGTTGAGAGAAATAGG 58.363 38.462 10.85 0.00 0.00 2.57
3595 5328 4.397417 ACTTGCATGTTGAGAGAAATAGGC 59.603 41.667 0.00 0.00 0.00 3.93
3596 5329 4.226427 TGCATGTTGAGAGAAATAGGCT 57.774 40.909 0.00 0.00 30.51 4.58
3597 5330 5.357742 TGCATGTTGAGAGAAATAGGCTA 57.642 39.130 0.00 0.00 30.51 3.93
3598 5331 5.363101 TGCATGTTGAGAGAAATAGGCTAG 58.637 41.667 0.00 0.00 30.51 3.42
3599 5332 5.104776 TGCATGTTGAGAGAAATAGGCTAGT 60.105 40.000 0.00 0.00 30.51 2.57
3600 5333 5.236047 GCATGTTGAGAGAAATAGGCTAGTG 59.764 44.000 0.00 0.00 0.00 2.74
3601 5334 5.344743 TGTTGAGAGAAATAGGCTAGTGG 57.655 43.478 0.00 0.00 0.00 4.00
3602 5335 4.162320 TGTTGAGAGAAATAGGCTAGTGGG 59.838 45.833 0.00 0.00 0.00 4.61
3603 5336 3.309296 TGAGAGAAATAGGCTAGTGGGG 58.691 50.000 0.00 0.00 0.00 4.96
3604 5337 2.635427 GAGAGAAATAGGCTAGTGGGGG 59.365 54.545 0.00 0.00 0.00 5.40
3605 5338 1.072489 GAGAAATAGGCTAGTGGGGGC 59.928 57.143 0.00 0.00 0.00 5.80
3606 5339 1.141185 GAAATAGGCTAGTGGGGGCT 58.859 55.000 0.00 0.00 42.25 5.19
3607 5340 2.090153 AGAAATAGGCTAGTGGGGGCTA 60.090 50.000 0.00 0.00 43.94 3.93
3608 5341 2.031495 AATAGGCTAGTGGGGGCTAG 57.969 55.000 0.00 0.00 43.27 3.42
3616 5349 4.810191 CTAGTGGGGGCTAGCTATTTAG 57.190 50.000 15.72 6.00 33.04 1.85
3617 5350 3.346146 AGTGGGGGCTAGCTATTTAGA 57.654 47.619 15.72 0.00 0.00 2.10
3618 5351 2.973406 AGTGGGGGCTAGCTATTTAGAC 59.027 50.000 15.72 2.98 0.00 2.59
3619 5352 2.704065 GTGGGGGCTAGCTATTTAGACA 59.296 50.000 15.72 0.39 29.77 3.41
3620 5353 3.328050 GTGGGGGCTAGCTATTTAGACAT 59.672 47.826 15.72 0.00 29.77 3.06
3621 5354 4.530946 GTGGGGGCTAGCTATTTAGACATA 59.469 45.833 15.72 0.00 29.77 2.29
3622 5355 4.777896 TGGGGGCTAGCTATTTAGACATAG 59.222 45.833 15.72 0.00 29.77 2.23
3623 5356 5.024118 GGGGGCTAGCTATTTAGACATAGA 58.976 45.833 15.72 0.00 29.77 1.98
3624 5357 5.484290 GGGGGCTAGCTATTTAGACATAGAA 59.516 44.000 15.72 0.00 29.77 2.10
3625 5358 6.351456 GGGGGCTAGCTATTTAGACATAGAAG 60.351 46.154 15.72 0.00 29.77 2.85
3626 5359 6.437793 GGGGCTAGCTATTTAGACATAGAAGA 59.562 42.308 15.72 0.00 29.77 2.87
3639 5372 9.698309 TTAGACATAGAAGATTAGTGCAATAGC 57.302 33.333 0.00 0.00 42.57 2.97
3685 5418 5.082251 TCATCTCATCTTGTCTGAACCAG 57.918 43.478 0.00 0.00 0.00 4.00
3692 5425 7.124750 TCTCATCTTGTCTGAACCAGATCAATA 59.875 37.037 0.00 1.51 42.73 1.90
3700 5433 6.820656 GTCTGAACCAGATCAATATTCACACT 59.179 38.462 0.00 0.00 42.73 3.55
3763 5496 6.613271 TGCTTTAGGGCCATCCATAATAAAAA 59.387 34.615 6.18 0.00 38.29 1.94
3924 5657 4.111255 TGATGTCCTCTATAGCAGCTCT 57.889 45.455 0.00 0.00 0.00 4.09
3949 5682 9.674824 CTTTTAAATGCTAAATCCTATCAGCAG 57.325 33.333 1.38 0.00 46.35 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 9.430623 ACAGCAACAAACTTTAACATAAAACTT 57.569 25.926 0.00 0.00 0.00 2.66
54 55 8.996024 ACAGCAACAAACTTTAACATAAAACT 57.004 26.923 0.00 0.00 0.00 2.66
81 82 9.872757 CGCACGGACATTTAAACTAATTATTAT 57.127 29.630 0.00 0.00 0.00 1.28
82 83 8.881743 ACGCACGGACATTTAAACTAATTATTA 58.118 29.630 0.00 0.00 0.00 0.98
83 84 7.754625 ACGCACGGACATTTAAACTAATTATT 58.245 30.769 0.00 0.00 0.00 1.40
84 85 7.311364 ACGCACGGACATTTAAACTAATTAT 57.689 32.000 0.00 0.00 0.00 1.28
85 86 6.724694 ACGCACGGACATTTAAACTAATTA 57.275 33.333 0.00 0.00 0.00 1.40
86 87 5.616488 ACGCACGGACATTTAAACTAATT 57.384 34.783 0.00 0.00 0.00 1.40
87 88 5.387279 CAACGCACGGACATTTAAACTAAT 58.613 37.500 0.00 0.00 0.00 1.73
88 89 4.774586 CAACGCACGGACATTTAAACTAA 58.225 39.130 0.00 0.00 0.00 2.24
93 94 0.945099 TGCAACGCACGGACATTTAA 59.055 45.000 0.00 0.00 31.71 1.52
94 95 0.945099 TTGCAACGCACGGACATTTA 59.055 45.000 0.00 0.00 38.71 1.40
136 139 1.600013 GTGTTGTGTGACGCCATGTAA 59.400 47.619 0.00 0.00 0.00 2.41
137 140 1.202592 AGTGTTGTGTGACGCCATGTA 60.203 47.619 0.00 0.00 0.00 2.29
139 142 0.662619 AAGTGTTGTGTGACGCCATG 59.337 50.000 0.00 0.00 0.00 3.66
140 143 1.388547 AAAGTGTTGTGTGACGCCAT 58.611 45.000 0.00 0.00 0.00 4.40
143 146 6.853872 TGAATATAAAAAGTGTTGTGTGACGC 59.146 34.615 0.00 0.00 0.00 5.19
166 169 9.834628 CTTATTTCTAACGTTAGCCAAAATTGA 57.165 29.630 27.01 17.40 0.00 2.57
167 170 9.072294 CCTTATTTCTAACGTTAGCCAAAATTG 57.928 33.333 27.01 20.13 0.00 2.32
199 202 7.908082 TCCGAATTTTATTGTCGAAAATGCTAG 59.092 33.333 11.24 0.00 36.77 3.42
202 211 6.504180 CGTCCGAATTTTATTGTCGAAAATGC 60.504 38.462 11.24 0.00 36.77 3.56
209 218 2.028284 TCGCGTCCGAATTTTATTGTCG 59.972 45.455 5.77 0.00 41.17 4.35
221 230 1.659335 GTCACTTGTTCGCGTCCGA 60.659 57.895 5.77 0.00 42.66 4.55
227 236 2.415512 GTCATTAGGGTCACTTGTTCGC 59.584 50.000 0.00 0.00 0.00 4.70
228 237 3.659786 TGTCATTAGGGTCACTTGTTCG 58.340 45.455 0.00 0.00 0.00 3.95
232 241 5.942872 GACAAATGTCATTAGGGTCACTTG 58.057 41.667 8.63 4.22 44.18 3.16
247 256 6.485171 AGCTAAATTAGGTCCTGACAAATGT 58.515 36.000 0.00 0.00 0.00 2.71
260 269 8.548721 CACATAAAAGTACGGAGCTAAATTAGG 58.451 37.037 1.88 0.00 0.00 2.69
262 271 9.826574 ATCACATAAAAGTACGGAGCTAAATTA 57.173 29.630 0.00 0.00 0.00 1.40
267 276 6.459670 TCATCACATAAAAGTACGGAGCTA 57.540 37.500 0.00 0.00 0.00 3.32
277 286 9.817365 CACAACTACTCTTTCATCACATAAAAG 57.183 33.333 0.00 0.00 0.00 2.27
281 290 6.463360 TGCACAACTACTCTTTCATCACATA 58.537 36.000 0.00 0.00 0.00 2.29
284 293 5.409520 TCATGCACAACTACTCTTTCATCAC 59.590 40.000 0.00 0.00 0.00 3.06
289 298 9.495754 GATTATTTCATGCACAACTACTCTTTC 57.504 33.333 0.00 0.00 0.00 2.62
479 538 1.151668 CGGTCAAGTCCTTCTGCTTG 58.848 55.000 0.00 0.00 42.32 4.01
485 544 1.202486 TGTGTGTCGGTCAAGTCCTTC 60.202 52.381 0.00 0.00 0.00 3.46
507 566 1.621814 AGGCCAGTACGTGTTGTGTAT 59.378 47.619 5.01 0.00 0.00 2.29
508 567 1.042229 AGGCCAGTACGTGTTGTGTA 58.958 50.000 5.01 0.00 0.00 2.90
509 568 1.042229 TAGGCCAGTACGTGTTGTGT 58.958 50.000 5.01 0.00 0.00 3.72
510 569 2.157834 TTAGGCCAGTACGTGTTGTG 57.842 50.000 5.01 0.00 0.00 3.33
511 570 2.914695 TTTAGGCCAGTACGTGTTGT 57.085 45.000 5.01 0.00 0.00 3.32
529 588 7.208080 AGAGAGAGTACGTGTTGTATGTTTTT 58.792 34.615 0.00 0.00 35.02 1.94
530 589 6.746120 AGAGAGAGTACGTGTTGTATGTTTT 58.254 36.000 0.00 0.00 35.02 2.43
531 590 6.207025 AGAGAGAGAGTACGTGTTGTATGTTT 59.793 38.462 0.00 0.00 35.02 2.83
532 591 5.706369 AGAGAGAGAGTACGTGTTGTATGTT 59.294 40.000 0.00 0.00 35.02 2.71
533 592 5.247084 AGAGAGAGAGTACGTGTTGTATGT 58.753 41.667 0.00 0.00 35.02 2.29
596 664 1.209747 GGAATAGAAAGGGGTGCGTCT 59.790 52.381 0.00 0.00 0.00 4.18
598 666 0.255033 GGGAATAGAAAGGGGTGCGT 59.745 55.000 0.00 0.00 0.00 5.24
599 667 0.465642 GGGGAATAGAAAGGGGTGCG 60.466 60.000 0.00 0.00 0.00 5.34
600 668 0.629058 TGGGGAATAGAAAGGGGTGC 59.371 55.000 0.00 0.00 0.00 5.01
601 669 1.923148 AGTGGGGAATAGAAAGGGGTG 59.077 52.381 0.00 0.00 0.00 4.61
603 671 2.439880 GAGAGTGGGGAATAGAAAGGGG 59.560 54.545 0.00 0.00 0.00 4.79
609 685 3.011821 AGTGAGTGAGAGTGGGGAATAGA 59.988 47.826 0.00 0.00 0.00 1.98
620 696 3.694072 CACTAGGGAGAAGTGAGTGAGAG 59.306 52.174 0.00 0.00 45.89 3.20
652 731 2.610859 AAGATGGGAGGTGGCGGT 60.611 61.111 0.00 0.00 0.00 5.68
658 737 0.323542 ACGACGAGAAGATGGGAGGT 60.324 55.000 0.00 0.00 0.00 3.85
681 760 3.539593 TTCCTGCCCTCGTCCTCCA 62.540 63.158 0.00 0.00 0.00 3.86
755 834 3.100862 GAGCCACGCAAGATTCCGC 62.101 63.158 0.00 0.00 43.62 5.54
759 838 1.078143 GAGGGAGCCACGCAAGATT 60.078 57.895 0.00 0.00 43.62 2.40
761 840 1.768684 AAAGAGGGAGCCACGCAAGA 61.769 55.000 0.00 0.00 43.62 3.02
778 857 1.271652 TGCGGGTGGAGCTGAAATAAA 60.272 47.619 0.00 0.00 35.28 1.40
837 939 2.046023 CATCCGCACAAGGAGGCA 60.046 61.111 0.00 0.00 44.55 4.75
897 1005 2.578178 CGAGGAAGCAGCGACGAG 60.578 66.667 0.00 0.00 0.00 4.18
898 1006 4.116328 CCGAGGAAGCAGCGACGA 62.116 66.667 0.00 0.00 0.00 4.20
1025 1136 5.280521 GGTACATGGAAAGAAAGGAGGAGAA 60.281 44.000 0.00 0.00 0.00 2.87
1035 1146 2.422597 CAGTGCGGTACATGGAAAGAA 58.577 47.619 0.00 0.00 0.00 2.52
1083 1194 7.040686 GCCCAGTTTAAGTTCAGTAATCTTTCA 60.041 37.037 0.00 0.00 0.00 2.69
1098 1209 5.126061 AGAGCATGTTATTGCCCAGTTTAAG 59.874 40.000 0.00 0.00 43.83 1.85
1103 1214 2.648059 GAGAGCATGTTATTGCCCAGT 58.352 47.619 0.00 0.00 43.83 4.00
1131 1250 7.064728 AGTCCTAAACTTCGCATCTAAAATGTC 59.935 37.037 0.00 0.00 33.03 3.06
1145 1264 7.981102 ATTGGTTCAGTTAGTCCTAAACTTC 57.019 36.000 0.00 0.00 39.55 3.01
1167 1286 3.818180 CCCTCTGCTCTGCAAATCTATT 58.182 45.455 0.00 0.00 38.41 1.73
1357 1477 7.803279 AACAAGTTTCGTCCTCTCTTATTTT 57.197 32.000 0.00 0.00 0.00 1.82
1430 1550 5.009610 GGCAACAAGTAACCAGAATGAAAGA 59.990 40.000 0.00 0.00 39.69 2.52
1456 1576 4.804139 ACGAAGGCATGTTATTTCTAGACG 59.196 41.667 0.00 0.00 0.00 4.18
1502 1622 1.956477 GTCTTGGTGCACAGGTTGAAT 59.044 47.619 20.43 0.00 0.00 2.57
1550 1671 2.020720 CACCAACACCAAACACAGCTA 58.979 47.619 0.00 0.00 0.00 3.32
1558 1679 0.108424 GCAGCAACACCAACACCAAA 60.108 50.000 0.00 0.00 0.00 3.28
1571 1692 1.388547 AGGAACGAAACAAGCAGCAA 58.611 45.000 0.00 0.00 0.00 3.91
1577 1698 2.351738 GGATGCCAAGGAACGAAACAAG 60.352 50.000 0.00 0.00 0.00 3.16
1604 1733 2.231964 GCCATTTGAGTTGCAATCTCCA 59.768 45.455 19.60 10.81 36.15 3.86
1635 1764 7.133891 AGATTCTTACACATTCCAAAACTCG 57.866 36.000 0.00 0.00 0.00 4.18
1680 1811 1.172812 AACTTTCGTCCAGGCAAGCC 61.173 55.000 2.02 2.02 0.00 4.35
1690 1821 6.721321 TCTTACACATTCCAAAACTTTCGTC 58.279 36.000 0.00 0.00 0.00 4.20
1752 2017 5.795766 ACGTTGTTGCTGATACATTTATCG 58.204 37.500 0.00 0.00 37.51 2.92
1761 2026 4.812091 ACACACTAAACGTTGTTGCTGATA 59.188 37.500 0.00 0.00 0.00 2.15
1877 2449 8.253810 ACTATTAGATATCACATGGTTCATCGG 58.746 37.037 5.32 0.00 0.00 4.18
1901 2473 3.838317 TGCTAACCATGTGGACTTAGACT 59.162 43.478 5.96 0.00 38.94 3.24
1998 2572 8.758829 ACACTACATAGTTCTTCATCACCATTA 58.241 33.333 0.00 0.00 33.46 1.90
2001 2575 6.437477 AGACACTACATAGTTCTTCATCACCA 59.563 38.462 0.00 0.00 33.46 4.17
2031 2605 0.609662 ATGATTGGTTGGCAGTTGGC 59.390 50.000 0.00 0.00 43.74 4.52
2032 2606 2.173519 AGATGATTGGTTGGCAGTTGG 58.826 47.619 0.00 0.00 0.00 3.77
2033 2607 6.889301 ATATAGATGATTGGTTGGCAGTTG 57.111 37.500 0.00 0.00 0.00 3.16
2034 2608 9.017509 CAATATATAGATGATTGGTTGGCAGTT 57.982 33.333 0.00 0.00 0.00 3.16
2035 2609 7.613022 CCAATATATAGATGATTGGTTGGCAGT 59.387 37.037 6.15 0.00 43.09 4.40
2036 2610 7.993101 CCAATATATAGATGATTGGTTGGCAG 58.007 38.462 6.15 0.00 43.09 4.85
2037 2611 7.943079 CCAATATATAGATGATTGGTTGGCA 57.057 36.000 6.15 0.00 43.09 4.92
2085 2661 8.931385 AAAAGATATCACCAATTCAATTTCCG 57.069 30.769 5.32 0.00 0.00 4.30
2093 2696 9.657419 AATTCACCAAAAAGATATCACCAATTC 57.343 29.630 5.32 0.00 0.00 2.17
2094 2697 9.657419 GAATTCACCAAAAAGATATCACCAATT 57.343 29.630 5.32 0.00 0.00 2.32
2140 2743 9.748708 TTTTGAAGAAAACAGTGGAAATGATAG 57.251 29.630 0.00 0.00 34.17 2.08
2205 2810 9.378551 AGTATTCAAAGTGCTGATACGATTTAA 57.621 29.630 0.00 0.00 0.00 1.52
2294 2905 4.911610 CAGATAGCACAAACAAAGAAACGG 59.088 41.667 0.00 0.00 0.00 4.44
2295 2906 5.510671 ACAGATAGCACAAACAAAGAAACG 58.489 37.500 0.00 0.00 0.00 3.60
2342 2953 5.968167 TGGACTAGGATAAGTAACCATGGTT 59.032 40.000 31.85 31.85 41.65 3.67
2379 2990 8.503428 AGATCATATAGAAGGGACAACTGATT 57.497 34.615 0.00 0.00 0.00 2.57
2421 3032 7.893302 ACTACAGAAGGAATATAGATCTGGGAG 59.107 40.741 5.18 5.28 41.34 4.30
2479 3090 4.964897 TGGAGAGACAATGATGGATGTAGT 59.035 41.667 0.00 0.00 0.00 2.73
2689 3309 5.124936 CCCAAATAGTACTTTTGTAGCCACC 59.875 44.000 19.81 0.00 35.28 4.61
2764 3384 2.843113 CCTCCTCAGGTTTCATTCTCCT 59.157 50.000 0.00 0.00 34.60 3.69
2789 3409 5.525378 GGTAGAGAAGACAATATTGCCACAG 59.475 44.000 15.48 0.00 0.00 3.66
2793 3413 5.918608 TCTGGTAGAGAAGACAATATTGCC 58.081 41.667 15.48 4.31 0.00 4.52
2840 4278 9.905713 AAACTGAATCTTTAGATGGCAATACTA 57.094 29.630 0.00 0.00 34.49 1.82
2992 4581 6.756542 CGACCAATGTGAGTTTCATATCTACA 59.243 38.462 0.00 0.00 27.67 2.74
3030 4749 4.584638 ACATGCCCCACTCAGTATTAAA 57.415 40.909 0.00 0.00 0.00 1.52
3031 4750 4.719773 ACTACATGCCCCACTCAGTATTAA 59.280 41.667 0.00 0.00 0.00 1.40
3037 4757 0.904649 TGACTACATGCCCCACTCAG 59.095 55.000 0.00 0.00 0.00 3.35
3078 4802 7.707624 ATATGAATGACTTTTGAGCCAAGAA 57.292 32.000 0.00 0.00 0.00 2.52
3121 4845 1.173043 CGCATGTTACATGGGGTGTT 58.827 50.000 27.63 0.00 42.29 3.32
3138 4862 2.029828 ACAGGATATGTAGTAGCAGCGC 60.030 50.000 0.00 0.00 41.60 5.92
3143 4867 4.169508 CGCATGACAGGATATGTAGTAGC 58.830 47.826 0.00 0.00 44.17 3.58
3147 4871 3.309961 AGCGCATGACAGGATATGTAG 57.690 47.619 11.47 0.00 44.17 2.74
3231 4955 4.321750 GCATGAATAGCTTCCCAATCCATG 60.322 45.833 0.00 0.00 33.92 3.66
3300 5033 3.006967 GTGCGGGGTATCATCTAGTTCAT 59.993 47.826 0.00 0.00 0.00 2.57
3305 5038 0.959553 ACGTGCGGGGTATCATCTAG 59.040 55.000 0.00 0.00 0.00 2.43
3306 5039 1.067974 CAACGTGCGGGGTATCATCTA 59.932 52.381 0.00 0.00 0.00 1.98
3307 5040 0.179084 CAACGTGCGGGGTATCATCT 60.179 55.000 0.00 0.00 0.00 2.90
3308 5041 0.461339 ACAACGTGCGGGGTATCATC 60.461 55.000 0.00 0.00 0.00 2.92
3309 5042 0.035820 AACAACGTGCGGGGTATCAT 60.036 50.000 0.00 0.00 0.00 2.45
3310 5043 0.951525 CAACAACGTGCGGGGTATCA 60.952 55.000 0.00 0.00 0.00 2.15
3311 5044 1.791662 CAACAACGTGCGGGGTATC 59.208 57.895 0.00 0.00 0.00 2.24
3312 5045 2.329614 GCAACAACGTGCGGGGTAT 61.330 57.895 0.00 0.00 34.21 2.73
3313 5046 2.973600 GCAACAACGTGCGGGGTA 60.974 61.111 0.00 0.00 34.21 3.69
3319 5052 1.729131 CATTCCCGCAACAACGTGC 60.729 57.895 0.00 0.00 41.32 5.34
3320 5053 0.030101 AACATTCCCGCAACAACGTG 59.970 50.000 0.00 0.00 0.00 4.49
3321 5054 0.741915 AAACATTCCCGCAACAACGT 59.258 45.000 0.00 0.00 0.00 3.99
3322 5055 1.520590 CAAAACATTCCCGCAACAACG 59.479 47.619 0.00 0.00 0.00 4.10
3323 5056 1.260297 GCAAAACATTCCCGCAACAAC 59.740 47.619 0.00 0.00 0.00 3.32
3324 5057 1.134699 TGCAAAACATTCCCGCAACAA 60.135 42.857 0.00 0.00 0.00 2.83
3325 5058 0.461548 TGCAAAACATTCCCGCAACA 59.538 45.000 0.00 0.00 0.00 3.33
3326 5059 1.576356 TTGCAAAACATTCCCGCAAC 58.424 45.000 0.00 0.00 37.64 4.17
3327 5060 2.540265 ATTGCAAAACATTCCCGCAA 57.460 40.000 1.71 0.00 45.70 4.85
3328 5061 3.883830 ATATTGCAAAACATTCCCGCA 57.116 38.095 1.71 0.00 0.00 5.69
3329 5062 5.982516 TGAATATATTGCAAAACATTCCCGC 59.017 36.000 19.35 4.78 0.00 6.13
3330 5063 7.202526 ACTGAATATATTGCAAAACATTCCCG 58.797 34.615 19.35 14.97 0.00 5.14
3331 5064 8.947055 AACTGAATATATTGCAAAACATTCCC 57.053 30.769 19.35 5.51 0.00 3.97
3341 5074 8.773645 CGACCAATTCTAACTGAATATATTGCA 58.226 33.333 1.78 0.62 43.99 4.08
3342 5075 8.774586 ACGACCAATTCTAACTGAATATATTGC 58.225 33.333 1.78 0.00 43.99 3.56
3346 5079 9.923143 CCATACGACCAATTCTAACTGAATATA 57.077 33.333 0.00 0.00 43.99 0.86
3347 5080 8.647796 TCCATACGACCAATTCTAACTGAATAT 58.352 33.333 0.00 0.00 43.99 1.28
3348 5081 8.014070 TCCATACGACCAATTCTAACTGAATA 57.986 34.615 0.00 0.00 43.99 1.75
3349 5082 6.884832 TCCATACGACCAATTCTAACTGAAT 58.115 36.000 0.00 0.00 46.49 2.57
3350 5083 6.288941 TCCATACGACCAATTCTAACTGAA 57.711 37.500 0.00 0.00 39.24 3.02
3351 5084 5.925506 TCCATACGACCAATTCTAACTGA 57.074 39.130 0.00 0.00 0.00 3.41
3352 5085 5.872617 TGTTCCATACGACCAATTCTAACTG 59.127 40.000 0.00 0.00 0.00 3.16
3353 5086 6.045072 TGTTCCATACGACCAATTCTAACT 57.955 37.500 0.00 0.00 0.00 2.24
3354 5087 6.537301 TCATGTTCCATACGACCAATTCTAAC 59.463 38.462 0.00 0.00 0.00 2.34
3355 5088 6.645306 TCATGTTCCATACGACCAATTCTAA 58.355 36.000 0.00 0.00 0.00 2.10
3356 5089 6.228616 TCATGTTCCATACGACCAATTCTA 57.771 37.500 0.00 0.00 0.00 2.10
3357 5090 5.097742 TCATGTTCCATACGACCAATTCT 57.902 39.130 0.00 0.00 0.00 2.40
3358 5091 5.811399 TTCATGTTCCATACGACCAATTC 57.189 39.130 0.00 0.00 0.00 2.17
3359 5092 8.463930 AATATTCATGTTCCATACGACCAATT 57.536 30.769 0.00 0.00 0.00 2.32
3360 5093 8.352201 CAAATATTCATGTTCCATACGACCAAT 58.648 33.333 0.00 0.00 0.00 3.16
3361 5094 7.201776 CCAAATATTCATGTTCCATACGACCAA 60.202 37.037 0.00 0.00 0.00 3.67
3362 5095 6.262049 CCAAATATTCATGTTCCATACGACCA 59.738 38.462 0.00 0.00 0.00 4.02
3363 5096 6.485313 TCCAAATATTCATGTTCCATACGACC 59.515 38.462 0.00 0.00 0.00 4.79
3364 5097 7.441157 TCTCCAAATATTCATGTTCCATACGAC 59.559 37.037 0.00 0.00 0.00 4.34
3365 5098 7.505258 TCTCCAAATATTCATGTTCCATACGA 58.495 34.615 0.00 0.00 0.00 3.43
3366 5099 7.728847 TCTCCAAATATTCATGTTCCATACG 57.271 36.000 0.00 0.00 0.00 3.06
3406 5139 9.590451 CACCACAAATCATATTTATTTTCAGCT 57.410 29.630 0.00 0.00 0.00 4.24
3407 5140 8.330302 GCACCACAAATCATATTTATTTTCAGC 58.670 33.333 0.00 0.00 0.00 4.26
3408 5141 9.590451 AGCACCACAAATCATATTTATTTTCAG 57.410 29.630 0.00 0.00 0.00 3.02
3409 5142 9.941325 AAGCACCACAAATCATATTTATTTTCA 57.059 25.926 0.00 0.00 0.00 2.69
3411 5144 9.941325 TCAAGCACCACAAATCATATTTATTTT 57.059 25.926 0.00 0.00 0.00 1.82
3417 5150 9.537192 CAATAATCAAGCACCACAAATCATATT 57.463 29.630 0.00 0.00 0.00 1.28
3418 5151 8.698210 ACAATAATCAAGCACCACAAATCATAT 58.302 29.630 0.00 0.00 0.00 1.78
3419 5152 8.065473 ACAATAATCAAGCACCACAAATCATA 57.935 30.769 0.00 0.00 0.00 2.15
3420 5153 6.938507 ACAATAATCAAGCACCACAAATCAT 58.061 32.000 0.00 0.00 0.00 2.45
3421 5154 6.343716 ACAATAATCAAGCACCACAAATCA 57.656 33.333 0.00 0.00 0.00 2.57
3424 5157 9.800433 CATTATACAATAATCAAGCACCACAAA 57.200 29.630 0.00 0.00 0.00 2.83
3425 5158 8.965819 ACATTATACAATAATCAAGCACCACAA 58.034 29.630 0.00 0.00 0.00 3.33
3426 5159 8.518430 ACATTATACAATAATCAAGCACCACA 57.482 30.769 0.00 0.00 0.00 4.17
3465 5198 9.571810 TGTAAACATGCATGAGAATTTACATTC 57.428 29.630 30.29 16.83 37.51 2.67
3467 5200 9.524106 CATGTAAACATGCATGAGAATTTACAT 57.476 29.630 33.74 33.74 46.44 2.29
3468 5201 8.914328 CATGTAAACATGCATGAGAATTTACA 57.086 30.769 32.98 32.98 45.92 2.41
3483 5216 6.478512 AAAACCACCTCAACATGTAAACAT 57.521 33.333 0.00 0.00 36.96 2.71
3484 5217 5.923733 AAAACCACCTCAACATGTAAACA 57.076 34.783 0.00 0.00 0.00 2.83
3516 5249 2.373540 GCACCACAACATGCAATCAT 57.626 45.000 0.00 0.00 41.65 2.45
3517 5250 3.890145 GCACCACAACATGCAATCA 57.110 47.368 0.00 0.00 41.65 2.57
3522 5255 0.318955 GAAGGTGCACCACAACATGC 60.319 55.000 36.39 10.88 39.04 4.06
3523 5256 0.314935 GGAAGGTGCACCACAACATG 59.685 55.000 36.39 0.00 39.04 3.21
3524 5257 0.185901 AGGAAGGTGCACCACAACAT 59.814 50.000 36.39 18.76 39.04 2.71
3525 5258 0.465460 GAGGAAGGTGCACCACAACA 60.465 55.000 36.39 0.00 39.04 3.33
3526 5259 1.172812 GGAGGAAGGTGCACCACAAC 61.173 60.000 36.39 22.52 38.89 3.32
3527 5260 1.150536 GGAGGAAGGTGCACCACAA 59.849 57.895 36.39 0.00 38.89 3.33
3528 5261 1.426251 ATGGAGGAAGGTGCACCACA 61.426 55.000 36.39 23.19 38.89 4.17
3529 5262 0.962356 CATGGAGGAAGGTGCACCAC 60.962 60.000 36.39 27.42 38.89 4.16
3530 5263 1.379916 CATGGAGGAAGGTGCACCA 59.620 57.895 36.39 15.61 38.89 4.17
3531 5264 2.048603 GCATGGAGGAAGGTGCACC 61.049 63.158 29.22 29.22 37.52 5.01
3532 5265 1.303561 TGCATGGAGGAAGGTGCAC 60.304 57.895 8.80 8.80 42.13 4.57
3533 5266 3.169378 TGCATGGAGGAAGGTGCA 58.831 55.556 0.00 0.00 44.50 4.57
3534 5267 0.682209 ACATGCATGGAGGAAGGTGC 60.682 55.000 29.41 0.00 38.05 5.01
3535 5268 1.475280 CAACATGCATGGAGGAAGGTG 59.525 52.381 29.41 6.61 0.00 4.00
3536 5269 1.355381 TCAACATGCATGGAGGAAGGT 59.645 47.619 29.41 3.93 0.00 3.50
3537 5270 2.133281 TCAACATGCATGGAGGAAGG 57.867 50.000 29.41 10.99 0.00 3.46
3538 5271 3.697542 TCATTCAACATGCATGGAGGAAG 59.302 43.478 29.41 19.41 0.00 3.46
3539 5272 3.699413 TCATTCAACATGCATGGAGGAA 58.301 40.909 29.41 25.79 0.00 3.36
3540 5273 3.369242 TCATTCAACATGCATGGAGGA 57.631 42.857 29.41 19.79 0.00 3.71
3541 5274 3.634910 TCATCATTCAACATGCATGGAGG 59.365 43.478 29.41 17.13 0.00 4.30
3542 5275 4.261614 CCTCATCATTCAACATGCATGGAG 60.262 45.833 29.41 20.60 0.00 3.86
3543 5276 3.634910 CCTCATCATTCAACATGCATGGA 59.365 43.478 29.41 15.79 0.00 3.41
3544 5277 3.383505 ACCTCATCATTCAACATGCATGG 59.616 43.478 29.41 13.66 0.00 3.66
3545 5278 4.359706 CACCTCATCATTCAACATGCATG 58.640 43.478 25.09 25.09 0.00 4.06
3546 5279 3.383505 CCACCTCATCATTCAACATGCAT 59.616 43.478 0.00 0.00 0.00 3.96
3547 5280 2.756207 CCACCTCATCATTCAACATGCA 59.244 45.455 0.00 0.00 0.00 3.96
3548 5281 2.480759 GCCACCTCATCATTCAACATGC 60.481 50.000 0.00 0.00 0.00 4.06
3549 5282 2.756207 TGCCACCTCATCATTCAACATG 59.244 45.455 0.00 0.00 0.00 3.21
3550 5283 3.090210 TGCCACCTCATCATTCAACAT 57.910 42.857 0.00 0.00 0.00 2.71
3551 5284 2.583024 TGCCACCTCATCATTCAACA 57.417 45.000 0.00 0.00 0.00 3.33
3552 5285 4.202441 AGTATGCCACCTCATCATTCAAC 58.798 43.478 0.00 0.00 0.00 3.18
3553 5286 4.508551 AGTATGCCACCTCATCATTCAA 57.491 40.909 0.00 0.00 0.00 2.69
3554 5287 4.201657 CAAGTATGCCACCTCATCATTCA 58.798 43.478 0.00 0.00 0.00 2.57
3555 5288 4.825546 CAAGTATGCCACCTCATCATTC 57.174 45.455 0.00 0.00 0.00 2.67
3569 5302 7.637229 CCTATTTCTCTCAACATGCAAGTATG 58.363 38.462 0.00 0.00 0.00 2.39
3570 5303 6.261826 GCCTATTTCTCTCAACATGCAAGTAT 59.738 38.462 0.00 0.00 0.00 2.12
3571 5304 5.586243 GCCTATTTCTCTCAACATGCAAGTA 59.414 40.000 0.00 0.00 0.00 2.24
3572 5305 4.397417 GCCTATTTCTCTCAACATGCAAGT 59.603 41.667 0.00 0.00 0.00 3.16
3573 5306 4.639310 AGCCTATTTCTCTCAACATGCAAG 59.361 41.667 0.00 0.00 0.00 4.01
3574 5307 4.592942 AGCCTATTTCTCTCAACATGCAA 58.407 39.130 0.00 0.00 0.00 4.08
3575 5308 4.226427 AGCCTATTTCTCTCAACATGCA 57.774 40.909 0.00 0.00 0.00 3.96
3576 5309 5.236047 CACTAGCCTATTTCTCTCAACATGC 59.764 44.000 0.00 0.00 0.00 4.06
3577 5310 5.757320 CCACTAGCCTATTTCTCTCAACATG 59.243 44.000 0.00 0.00 0.00 3.21
3578 5311 5.163258 CCCACTAGCCTATTTCTCTCAACAT 60.163 44.000 0.00 0.00 0.00 2.71
3579 5312 4.162320 CCCACTAGCCTATTTCTCTCAACA 59.838 45.833 0.00 0.00 0.00 3.33
3580 5313 4.443598 CCCCACTAGCCTATTTCTCTCAAC 60.444 50.000 0.00 0.00 0.00 3.18
3581 5314 3.711704 CCCCACTAGCCTATTTCTCTCAA 59.288 47.826 0.00 0.00 0.00 3.02
3582 5315 3.309296 CCCCACTAGCCTATTTCTCTCA 58.691 50.000 0.00 0.00 0.00 3.27
3583 5316 2.635427 CCCCCACTAGCCTATTTCTCTC 59.365 54.545 0.00 0.00 0.00 3.20
3584 5317 2.695585 CCCCCACTAGCCTATTTCTCT 58.304 52.381 0.00 0.00 0.00 3.10
3585 5318 1.072489 GCCCCCACTAGCCTATTTCTC 59.928 57.143 0.00 0.00 0.00 2.87
3586 5319 1.141185 GCCCCCACTAGCCTATTTCT 58.859 55.000 0.00 0.00 0.00 2.52
3587 5320 1.141185 AGCCCCCACTAGCCTATTTC 58.859 55.000 0.00 0.00 0.00 2.17
3588 5321 2.339769 CTAGCCCCCACTAGCCTATTT 58.660 52.381 0.00 0.00 33.69 1.40
3589 5322 2.031495 CTAGCCCCCACTAGCCTATT 57.969 55.000 0.00 0.00 33.69 1.73
3590 5323 3.796866 CTAGCCCCCACTAGCCTAT 57.203 57.895 0.00 0.00 33.69 2.57
3595 5328 4.221041 GTCTAAATAGCTAGCCCCCACTAG 59.779 50.000 12.13 5.56 42.20 2.57
3596 5329 4.158015 GTCTAAATAGCTAGCCCCCACTA 58.842 47.826 12.13 0.00 0.00 2.74
3597 5330 2.973406 GTCTAAATAGCTAGCCCCCACT 59.027 50.000 12.13 0.00 0.00 4.00
3598 5331 2.704065 TGTCTAAATAGCTAGCCCCCAC 59.296 50.000 12.13 0.02 0.00 4.61
3599 5332 3.054779 TGTCTAAATAGCTAGCCCCCA 57.945 47.619 12.13 0.00 0.00 4.96
3600 5333 5.024118 TCTATGTCTAAATAGCTAGCCCCC 58.976 45.833 12.13 0.00 31.33 5.40
3601 5334 6.437793 TCTTCTATGTCTAAATAGCTAGCCCC 59.562 42.308 12.13 0.00 31.33 5.80
3602 5335 7.469537 TCTTCTATGTCTAAATAGCTAGCCC 57.530 40.000 12.13 0.00 31.33 5.19
3607 5340 9.921637 GCACTAATCTTCTATGTCTAAATAGCT 57.078 33.333 0.00 0.00 31.33 3.32
3608 5341 9.698309 TGCACTAATCTTCTATGTCTAAATAGC 57.302 33.333 0.00 0.00 31.33 2.97
3613 5346 9.698309 GCTATTGCACTAATCTTCTATGTCTAA 57.302 33.333 0.00 0.00 39.41 2.10
3614 5347 8.307483 GGCTATTGCACTAATCTTCTATGTCTA 58.693 37.037 0.66 0.00 41.91 2.59
3615 5348 7.016072 AGGCTATTGCACTAATCTTCTATGTCT 59.984 37.037 0.66 0.00 41.91 3.41
3616 5349 7.117523 CAGGCTATTGCACTAATCTTCTATGTC 59.882 40.741 0.66 0.00 41.91 3.06
3617 5350 6.933521 CAGGCTATTGCACTAATCTTCTATGT 59.066 38.462 0.66 0.00 41.91 2.29
3618 5351 6.933521 ACAGGCTATTGCACTAATCTTCTATG 59.066 38.462 0.66 0.00 41.91 2.23
3619 5352 7.072263 ACAGGCTATTGCACTAATCTTCTAT 57.928 36.000 0.66 0.00 41.91 1.98
3620 5353 6.485830 ACAGGCTATTGCACTAATCTTCTA 57.514 37.500 0.66 0.00 41.91 2.10
3621 5354 5.365021 ACAGGCTATTGCACTAATCTTCT 57.635 39.130 0.66 0.00 41.91 2.85
3622 5355 6.284459 ACTACAGGCTATTGCACTAATCTTC 58.716 40.000 0.66 0.00 41.91 2.87
3623 5356 6.098982 AGACTACAGGCTATTGCACTAATCTT 59.901 38.462 0.66 0.00 41.91 2.40
3624 5357 5.600484 AGACTACAGGCTATTGCACTAATCT 59.400 40.000 0.66 0.00 41.91 2.40
3625 5358 5.848406 AGACTACAGGCTATTGCACTAATC 58.152 41.667 0.66 0.00 41.91 1.75
3626 5359 5.363868 TGAGACTACAGGCTATTGCACTAAT 59.636 40.000 0.66 0.00 41.91 1.73
3630 5363 3.526931 TGAGACTACAGGCTATTGCAC 57.473 47.619 0.66 0.00 41.91 4.57
3638 5371 5.298347 AGTTTTACAGTTGAGACTACAGGC 58.702 41.667 0.00 0.00 33.90 4.85
3639 5372 8.304596 TGATAGTTTTACAGTTGAGACTACAGG 58.695 37.037 0.00 0.00 33.90 4.00
3685 5418 4.763793 CCCCATCCAGTGTGAATATTGATC 59.236 45.833 0.00 0.00 0.00 2.92
3692 5425 3.541242 TTTTCCCCATCCAGTGTGAAT 57.459 42.857 0.00 0.00 0.00 2.57
3700 5433 9.722317 ATAAACTAATACAATTTTCCCCATCCA 57.278 29.630 0.00 0.00 0.00 3.41
3735 5468 0.034186 TGGATGGCCCTAAAGCACAG 60.034 55.000 0.00 0.00 35.38 3.66
3763 5496 6.012745 GGGCTAATAGATCCCATGAAACAAT 58.987 40.000 0.00 0.00 39.82 2.71
3780 5513 8.793592 CAACTAAAAGTCTAAAACTGGGCTAAT 58.206 33.333 0.00 0.00 38.58 1.73
3924 5657 9.189156 ACTGCTGATAGGATTTAGCATTTAAAA 57.811 29.630 0.00 0.00 44.27 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.