Multiple sequence alignment - TraesCS7A01G329100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G329100 chr7A 100.000 6033 0 0 1 6033 478579637 478585669 0.000000e+00 11141
1 TraesCS7A01G329100 chr7D 92.646 2638 145 30 2627 5240 416249554 416252166 0.000000e+00 3751
2 TraesCS7A01G329100 chr7D 92.663 1472 75 17 162 1623 416247108 416248556 0.000000e+00 2089
3 TraesCS7A01G329100 chr7D 94.775 957 48 2 1626 2581 416248590 416249545 0.000000e+00 1489
4 TraesCS7A01G329100 chr7D 84.871 661 56 27 4601 5240 416270684 416271321 1.430000e-175 627
5 TraesCS7A01G329100 chr7D 84.418 661 58 27 4601 5240 416268562 416269198 5.170000e-170 608
6 TraesCS7A01G329100 chr7D 84.091 660 62 27 4601 5240 416269626 416270262 1.120000e-166 597
7 TraesCS7A01G329100 chr7D 82.853 659 66 26 4601 5240 416271772 416272402 1.140000e-151 547
8 TraesCS7A01G329100 chr7D 92.429 317 19 4 4820 5132 416252797 416253112 1.190000e-121 448
9 TraesCS7A01G329100 chr7D 89.443 341 22 9 5699 6033 416273135 416273467 9.350000e-113 418
10 TraesCS7A01G329100 chr7D 92.029 138 10 1 4601 4737 416252587 416252724 6.170000e-45 193
11 TraesCS7A01G329100 chr7D 88.608 158 11 4 5480 5636 416272879 416273030 1.030000e-42 185
12 TraesCS7A01G329100 chr7D 92.593 108 8 0 21 128 416246919 416247026 8.100000e-34 156
13 TraesCS7A01G329100 chr7D 82.126 207 12 6 5242 5442 416272615 416272802 2.910000e-33 154
14 TraesCS7A01G329100 chr7B 91.006 2724 161 45 2746 5441 431687239 431689906 0.000000e+00 3596
15 TraesCS7A01G329100 chr7B 92.467 1500 79 18 134 1623 431684638 431686113 0.000000e+00 2113
16 TraesCS7A01G329100 chr7B 94.602 1093 54 4 1622 2711 431686142 431687232 0.000000e+00 1687
17 TraesCS7A01G329100 chr7B 86.571 350 27 6 5686 6033 431690216 431690547 9.550000e-98 368
18 TraesCS7A01G329100 chr7B 91.667 144 7 3 5487 5629 431689988 431690127 1.720000e-45 195
19 TraesCS7A01G329100 chr7B 93.519 108 7 0 21 128 431684486 431684593 1.740000e-35 161
20 TraesCS7A01G329100 chr2D 88.703 239 25 2 4489 4725 651315631 651315393 2.130000e-74 291
21 TraesCS7A01G329100 chr2D 82.812 192 27 6 4848 5036 651315288 651315100 3.740000e-37 167
22 TraesCS7A01G329100 chr2D 90.164 122 12 0 1076 1197 651319397 651319276 6.260000e-35 159
23 TraesCS7A01G329100 chr2B 88.511 235 27 0 4489 4723 780785824 780785590 9.900000e-73 285
24 TraesCS7A01G329100 chr2B 84.896 192 23 6 4848 5036 780785513 780785325 7.980000e-44 189
25 TraesCS7A01G329100 chr2B 88.525 122 14 0 1076 1197 780789598 780789477 1.350000e-31 148
26 TraesCS7A01G329100 chr2A 88.511 235 27 0 4486 4720 776290372 776290606 9.900000e-73 285
27 TraesCS7A01G329100 chr2A 87.597 129 14 1 1071 1197 776286718 776286846 1.350000e-31 148
28 TraesCS7A01G329100 chr6B 91.026 78 7 0 1904 1981 310218305 310218228 8.270000e-19 106
29 TraesCS7A01G329100 chr1B 90.909 77 7 0 1904 1980 347578977 347578901 2.970000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G329100 chr7A 478579637 478585669 6032 False 11141.000000 11141 100.000000 1 6033 1 chr7A.!!$F1 6032
1 TraesCS7A01G329100 chr7D 416246919 416253112 6193 False 1354.333333 3751 92.855833 21 5240 6 chr7D.!!$F1 5219
2 TraesCS7A01G329100 chr7D 416268562 416273467 4905 False 448.000000 627 85.201429 4601 6033 7 chr7D.!!$F2 1432
3 TraesCS7A01G329100 chr7B 431684486 431690547 6061 False 1353.333333 3596 91.638667 21 6033 6 chr7B.!!$F1 6012
4 TraesCS7A01G329100 chr2D 651315100 651319397 4297 True 205.666667 291 87.226333 1076 5036 3 chr2D.!!$R1 3960
5 TraesCS7A01G329100 chr2B 780785325 780789598 4273 True 207.333333 285 87.310667 1076 5036 3 chr2B.!!$R1 3960
6 TraesCS7A01G329100 chr2A 776286718 776290606 3888 False 216.500000 285 88.054000 1071 4720 2 chr2A.!!$F1 3649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
210 260 0.038744 AAGTGAGGGCTGGACATTGG 59.961 55.000 0.00 0.0 0.00 3.16 F
924 978 0.108585 GCTCCTTTCACCTGTGACCA 59.891 55.000 0.00 0.0 39.66 4.02 F
926 980 0.472471 TCCTTTCACCTGTGACCACC 59.528 55.000 0.00 0.0 39.66 4.61 F
2451 3566 1.604593 GCAGCAGATGGGTGGTGTT 60.605 57.895 5.09 0.0 45.77 3.32 F
4087 5551 0.400213 AGGCAGTGTTTTCCATCCGA 59.600 50.000 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1353 2112 1.343069 CCTAGGCTGTACCCATCCTC 58.657 60.000 0.0 0.0 38.21 3.71 R
2097 3126 1.403679 TCACAAACAAAGTTCAGCCCG 59.596 47.619 0.0 0.0 0.00 6.13 R
2697 4139 2.283298 CATGCGGCTGATAGTGTTTCT 58.717 47.619 0.0 0.0 0.00 2.52 R
4216 5682 0.179092 GTATACACCGCACCCACTCC 60.179 60.000 0.0 0.0 0.00 3.85 R
5660 9999 0.036577 CTCCCTCATCCATCATCCGC 60.037 60.000 0.0 0.0 0.00 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.253810 TCAAATATGGCCGAATTTTCAATGTAA 58.746 29.630 11.38 0.00 0.00 2.41
89 90 2.014010 AATTGTTGGGACTGCCACAT 57.986 45.000 0.00 0.00 35.15 3.21
92 93 2.666272 TGTTGGGACTGCCACATTAA 57.334 45.000 0.00 0.00 35.15 1.40
93 94 2.513753 TGTTGGGACTGCCACATTAAG 58.486 47.619 0.00 0.00 35.15 1.85
120 121 7.339976 GTCTGAAACCTACAGGAGAGTACTAAT 59.660 40.741 1.29 0.00 38.94 1.73
171 220 6.915349 ACAGCTGAAGATATTAGTATCGTCC 58.085 40.000 23.35 4.77 41.95 4.79
181 230 2.935481 AGTATCGTCCGAGGTTTGTC 57.065 50.000 0.00 0.00 0.00 3.18
185 234 1.168407 TCGTCCGAGGTTTGTCGACT 61.168 55.000 17.92 0.00 42.85 4.18
210 260 0.038744 AAGTGAGGGCTGGACATTGG 59.961 55.000 0.00 0.00 0.00 3.16
282 332 2.577593 GCGTCGTTAGAAGCCCCT 59.422 61.111 0.00 0.00 44.32 4.79
399 449 0.394625 GGAGCAGGGAGTAGACGAGT 60.395 60.000 0.00 0.00 0.00 4.18
473 523 4.783764 GGAAGAACCGATGAAACCAAAT 57.216 40.909 0.00 0.00 0.00 2.32
485 535 5.428184 TGAAACCAAATCAAACCAAACCT 57.572 34.783 0.00 0.00 0.00 3.50
555 605 1.446272 CACGACGAGGAAGGGAAGC 60.446 63.158 0.00 0.00 0.00 3.86
556 606 2.184579 CGACGAGGAAGGGAAGCC 59.815 66.667 0.00 0.00 0.00 4.35
677 727 1.520342 GCGATCTGGTCTGGACTGC 60.520 63.158 0.67 0.00 0.00 4.40
723 776 1.657487 ACGACTTCACGTGACGCAG 60.657 57.895 19.90 15.86 44.84 5.18
924 978 0.108585 GCTCCTTTCACCTGTGACCA 59.891 55.000 0.00 0.00 39.66 4.02
925 979 1.884235 CTCCTTTCACCTGTGACCAC 58.116 55.000 0.00 0.00 39.66 4.16
926 980 0.472471 TCCTTTCACCTGTGACCACC 59.528 55.000 0.00 0.00 39.66 4.61
1353 2112 9.561270 TCTCGCATATTTAGATTAGATCTTTCG 57.439 33.333 0.00 0.00 40.76 3.46
1440 2199 6.934645 TCACTTTTGATGTTTACTACCTCCAG 59.065 38.462 0.00 0.00 0.00 3.86
1552 2312 6.518208 AGTCTCACTAACTGTAGGATTGTC 57.482 41.667 0.00 0.00 0.00 3.18
1606 2366 6.267471 TGCTTACATTTTCTCCTCCAATTGTT 59.733 34.615 4.43 0.00 0.00 2.83
1624 2421 8.729756 CCAATTGTTGACACTCATCAAGTAATA 58.270 33.333 4.43 0.00 38.84 0.98
1770 2567 2.042433 CCCACAAAGGAAGGGGTGATTA 59.958 50.000 0.00 0.00 41.22 1.75
1784 2581 3.714798 GGGTGATTATACAGGGTGGAAGA 59.285 47.826 0.00 0.00 0.00 2.87
1801 2598 5.004535 GTGGAAGATGAATAGAACGTCGTTC 59.995 44.000 26.86 26.86 42.25 3.95
1826 2624 2.502510 CATTTCGTGTGCCGCTGC 60.503 61.111 0.00 0.00 36.19 5.25
2097 3126 1.749033 CCCCTATCCTGCGGAAGAC 59.251 63.158 0.00 0.00 34.34 3.01
2253 3282 3.496884 CGTGTTACCCCATCATATTTCCG 59.503 47.826 0.00 0.00 0.00 4.30
2353 3468 2.888594 ACGTGAAGTACATGCGCTAAT 58.111 42.857 9.73 0.00 38.94 1.73
2451 3566 1.604593 GCAGCAGATGGGTGGTGTT 60.605 57.895 5.09 0.00 45.77 3.32
2463 3578 2.684881 GGGTGGTGTTAGCATTGATGAG 59.315 50.000 0.00 0.00 0.00 2.90
2631 4073 9.710900 TGTCTGTCCATATATAGTTAAAGCATG 57.289 33.333 0.00 0.00 0.00 4.06
2689 4131 6.160664 AGTTACACGACATTAAATGTTCCG 57.839 37.500 0.00 0.00 45.03 4.30
2697 4139 6.424509 ACGACATTAAATGTTCCGTCAGTAAA 59.575 34.615 0.00 0.00 45.03 2.01
2707 4149 6.518493 TGTTCCGTCAGTAAAGAAACACTAT 58.482 36.000 0.00 0.00 0.00 2.12
2713 4155 5.062308 GTCAGTAAAGAAACACTATCAGCCG 59.938 44.000 0.00 0.00 0.00 5.52
2742 4184 3.486383 TGCTAAAACAAAGTAGCAGCCT 58.514 40.909 1.36 0.00 45.93 4.58
2964 4413 7.996758 ACTCCCTCTTTTCCTATCTTTGATA 57.003 36.000 0.00 0.00 0.00 2.15
2982 4431 3.761752 TGATATGGTTAGCGATGATCCGA 59.238 43.478 0.00 0.00 0.00 4.55
2997 4446 4.269183 TGATCCGATATTTTGTTGCTGGT 58.731 39.130 0.00 0.00 0.00 4.00
3082 4533 9.610104 TCTATATAAAAGGTAGGATGCTTACCA 57.390 33.333 12.84 0.00 42.47 3.25
3150 4606 5.349817 GGCGTCATGTGATATTTATCAGGAG 59.650 44.000 0.52 0.00 42.84 3.69
3337 4793 6.476243 TCTTTGCTACACTTTTCGTTATCC 57.524 37.500 0.00 0.00 0.00 2.59
3519 4975 1.072173 ACTAGCTTCACATGCACACCA 59.928 47.619 0.00 0.00 0.00 4.17
3847 5311 4.228912 AGTAAATTGTGACAGCTGTTGC 57.771 40.909 22.65 16.79 40.05 4.17
3880 5344 4.104102 GTCCATTACACCCCTCATATTGGA 59.896 45.833 0.00 0.00 0.00 3.53
4002 5466 1.275657 CGCGTGGTGAAATATCGGC 59.724 57.895 0.00 0.00 0.00 5.54
4071 5535 5.537188 TGTCATGTTTTAACATTGGAAGGC 58.463 37.500 5.40 0.00 46.95 4.35
4073 5537 5.634859 GTCATGTTTTAACATTGGAAGGCAG 59.365 40.000 5.40 0.00 46.95 4.85
4087 5551 0.400213 AGGCAGTGTTTTCCATCCGA 59.600 50.000 0.00 0.00 0.00 4.55
4104 5568 1.159285 CGACTGATTGTGTGGCACAT 58.841 50.000 24.95 7.92 44.16 3.21
4151 5617 1.141019 CATACCGTGGTGTCCTCCG 59.859 63.158 0.72 0.00 0.00 4.63
4202 5668 1.895798 CTGTGGCTCTAGGTTCACTGA 59.104 52.381 10.11 0.00 33.04 3.41
4210 5676 4.320641 GCTCTAGGTTCACTGATCGTATCC 60.321 50.000 0.00 0.00 0.00 2.59
4216 5682 1.065551 TCACTGATCGTATCCAGCGTG 59.934 52.381 0.00 0.00 33.90 5.34
4400 5866 3.195182 GGTAAGTACCAACAGTCCTCCTC 59.805 52.174 2.47 0.00 45.73 3.71
4404 5870 1.079543 CCAACAGTCCTCCTCGCTG 60.080 63.158 0.00 0.00 36.41 5.18
4405 5871 1.668294 CAACAGTCCTCCTCGCTGT 59.332 57.895 0.00 0.00 44.31 4.40
4406 5872 0.888619 CAACAGTCCTCCTCGCTGTA 59.111 55.000 0.00 0.00 41.94 2.74
4570 6161 0.391130 ACAACATACTGCGCATCGGT 60.391 50.000 12.24 8.52 38.08 4.69
4606 6197 2.091837 GGGGACGTGATCCTCTACCTC 61.092 61.905 0.00 0.00 45.95 3.85
4738 6329 1.197036 GTAAGCAAGCGGTGTCCTTTC 59.803 52.381 0.00 0.00 0.00 2.62
4739 6330 1.507141 AAGCAAGCGGTGTCCTTTCG 61.507 55.000 0.00 0.00 0.00 3.46
4749 6340 1.395954 GTGTCCTTTCGAAATACGGCC 59.604 52.381 11.70 0.00 42.82 6.13
4750 6341 0.648958 GTCCTTTCGAAATACGGCCG 59.351 55.000 26.86 26.86 42.82 6.13
4751 6342 0.531657 TCCTTTCGAAATACGGCCGA 59.468 50.000 35.90 16.57 42.82 5.54
4752 6343 1.067000 TCCTTTCGAAATACGGCCGAA 60.067 47.619 35.90 11.19 42.82 4.30
4753 6344 1.733360 CCTTTCGAAATACGGCCGAAA 59.267 47.619 35.90 20.35 45.97 3.46
4754 6345 2.160022 CCTTTCGAAATACGGCCGAAAA 59.840 45.455 35.90 17.45 46.88 2.29
4755 6346 2.878906 TTCGAAATACGGCCGAAAAC 57.121 45.000 35.90 17.07 39.03 2.43
4756 6347 1.077915 TCGAAATACGGCCGAAAACC 58.922 50.000 35.90 16.29 42.82 3.27
5036 8861 3.204827 CGCAGGGGCCTTGATTCG 61.205 66.667 21.24 9.82 36.38 3.34
5037 8862 2.272146 GCAGGGGCCTTGATTCGA 59.728 61.111 21.24 0.00 0.00 3.71
5039 8864 1.452108 CAGGGGCCTTGATTCGACC 60.452 63.158 10.68 0.00 0.00 4.79
5040 8865 2.124278 GGGGCCTTGATTCGACCC 60.124 66.667 0.84 0.00 40.05 4.46
5042 8867 1.452108 GGGCCTTGATTCGACCCAG 60.452 63.158 0.84 0.00 40.52 4.45
5046 8871 1.373570 CCTTGATTCGACCCAGCTTC 58.626 55.000 0.00 0.00 0.00 3.86
5048 8873 2.275318 CTTGATTCGACCCAGCTTCTC 58.725 52.381 0.00 0.00 0.00 2.87
5126 8951 5.126779 TGGCTTTGACCATAATAATACGCA 58.873 37.500 0.00 0.00 33.75 5.24
5127 8952 5.008217 TGGCTTTGACCATAATAATACGCAC 59.992 40.000 0.00 0.00 33.75 5.34
5129 8954 6.425721 GGCTTTGACCATAATAATACGCACTA 59.574 38.462 0.00 0.00 0.00 2.74
5131 8956 9.146984 GCTTTGACCATAATAATACGCACTATA 57.853 33.333 0.00 0.00 0.00 1.31
5171 9002 2.224426 ACTGCGTTGTTAGGTGGAATGA 60.224 45.455 0.00 0.00 0.00 2.57
5193 9028 4.489771 ATGCCTGGCTACGGTGGC 62.490 66.667 21.03 8.09 45.10 5.01
5225 9060 7.383029 CCTCTACTACTAGTAGTGTCGATGAAG 59.617 44.444 35.52 24.72 46.31 3.02
5240 9077 3.127548 CGATGAAGTTCTTTGTGATGGGG 59.872 47.826 4.17 0.00 0.00 4.96
5255 9303 1.236869 GGGGATGGGGATGGCAATT 59.763 57.895 0.00 0.00 0.00 2.32
5258 9306 0.105555 GGATGGGGATGGCAATTGGA 60.106 55.000 7.72 0.00 0.00 3.53
5263 9311 1.133199 GGGGATGGCAATTGGATACCA 60.133 52.381 7.72 6.28 36.43 3.25
5289 9337 0.697658 TGGTGGATGTTGCTCCATGA 59.302 50.000 0.00 0.00 46.67 3.07
5295 9343 1.662629 GATGTTGCTCCATGACTGACG 59.337 52.381 0.00 0.00 0.00 4.35
5363 9456 7.819900 GGTTCAACCTATATCAATGCTAGGTAG 59.180 40.741 0.00 0.00 43.45 3.18
5364 9457 8.368668 GTTCAACCTATATCAATGCTAGGTAGT 58.631 37.037 8.65 0.00 43.45 2.73
5365 9458 9.596308 TTCAACCTATATCAATGCTAGGTAGTA 57.404 33.333 8.65 0.00 43.45 1.82
5369 9487 9.683870 ACCTATATCAATGCTAGGTAGTAGTAC 57.316 37.037 7.07 0.00 42.65 2.73
5394 9512 5.431765 ACGGAAGTCTAGCAATGATGAAAT 58.568 37.500 0.00 0.00 44.19 2.17
5433 9551 1.946768 TGAGCACTGGTGTAAAGCAAC 59.053 47.619 2.64 0.00 34.76 4.17
5434 9552 1.266989 GAGCACTGGTGTAAAGCAACC 59.733 52.381 2.64 0.00 32.70 3.77
5473 9617 7.179076 ACCAAATACTAGGTGGTACAAGTAG 57.821 40.000 7.63 0.00 43.90 2.57
5475 9619 7.093596 ACCAAATACTAGGTGGTACAAGTAGTC 60.094 40.741 7.63 0.00 43.90 2.59
5476 9620 6.690194 AATACTAGGTGGTACAAGTAGTCG 57.310 41.667 0.00 0.00 44.16 4.18
5477 9621 4.026356 ACTAGGTGGTACAAGTAGTCGT 57.974 45.455 0.00 0.00 44.16 4.34
5478 9622 3.755378 ACTAGGTGGTACAAGTAGTCGTG 59.245 47.826 0.00 0.00 44.16 4.35
5479 9623 2.590821 AGGTGGTACAAGTAGTCGTGT 58.409 47.619 0.00 0.00 44.16 4.49
5480 9624 2.555757 AGGTGGTACAAGTAGTCGTGTC 59.444 50.000 0.00 0.00 44.16 3.67
5481 9625 2.578495 GTGGTACAAGTAGTCGTGTCG 58.422 52.381 0.00 0.00 44.16 4.35
5482 9626 2.031682 GTGGTACAAGTAGTCGTGTCGT 60.032 50.000 0.00 0.00 44.16 4.34
5485 9644 2.396160 ACAAGTAGTCGTGTCGTGTC 57.604 50.000 0.00 0.00 31.17 3.67
5525 9684 6.653320 TGTGAATAATCCTAAGAAAACGTGCT 59.347 34.615 0.00 0.00 0.00 4.40
5545 9764 3.238788 TGGTGGTCAACAGAGACTAGA 57.761 47.619 0.00 0.00 38.57 2.43
5547 9766 3.321111 TGGTGGTCAACAGAGACTAGAAC 59.679 47.826 0.00 0.00 38.57 3.01
5548 9767 3.321111 GGTGGTCAACAGAGACTAGAACA 59.679 47.826 0.00 0.00 38.57 3.18
5552 9771 6.483640 GTGGTCAACAGAGACTAGAACAAAAT 59.516 38.462 0.00 0.00 38.57 1.82
5553 9772 7.656137 GTGGTCAACAGAGACTAGAACAAAATA 59.344 37.037 0.00 0.00 38.57 1.40
5554 9773 8.375506 TGGTCAACAGAGACTAGAACAAAATAT 58.624 33.333 0.00 0.00 38.57 1.28
5555 9774 8.874816 GGTCAACAGAGACTAGAACAAAATATC 58.125 37.037 0.00 0.00 38.57 1.63
5556 9775 8.587950 GTCAACAGAGACTAGAACAAAATATCG 58.412 37.037 0.00 0.00 35.65 2.92
5557 9776 8.304596 TCAACAGAGACTAGAACAAAATATCGT 58.695 33.333 0.00 0.00 0.00 3.73
5558 9777 8.926710 CAACAGAGACTAGAACAAAATATCGTT 58.073 33.333 0.00 0.00 0.00 3.85
5566 9785 9.570488 ACTAGAACAAAATATCGTTAGTGAGAC 57.430 33.333 0.00 0.00 0.00 3.36
5637 9976 6.368805 GGTTTAGATGGATGAGGGAGATTTT 58.631 40.000 0.00 0.00 0.00 1.82
5638 9977 6.836007 GGTTTAGATGGATGAGGGAGATTTTT 59.164 38.462 0.00 0.00 0.00 1.94
5672 10011 4.533919 TTTGTTTTTGCGGATGATGGAT 57.466 36.364 0.00 0.00 0.00 3.41
5673 10012 3.507103 TGTTTTTGCGGATGATGGATG 57.493 42.857 0.00 0.00 0.00 3.51
5676 10015 1.971481 TTTGCGGATGATGGATGAGG 58.029 50.000 0.00 0.00 0.00 3.86
5678 10017 0.763986 TGCGGATGATGGATGAGGGA 60.764 55.000 0.00 0.00 0.00 4.20
5679 10018 0.036577 GCGGATGATGGATGAGGGAG 60.037 60.000 0.00 0.00 0.00 4.30
5681 10020 2.186243 CGGATGATGGATGAGGGAGAT 58.814 52.381 0.00 0.00 0.00 2.75
5682 10021 2.570752 CGGATGATGGATGAGGGAGATT 59.429 50.000 0.00 0.00 0.00 2.40
5683 10022 3.619242 CGGATGATGGATGAGGGAGATTG 60.619 52.174 0.00 0.00 0.00 2.67
5686 10025 2.977580 TGATGGATGAGGGAGATTGGAG 59.022 50.000 0.00 0.00 0.00 3.86
5687 10026 2.575921 TGGATGAGGGAGATTGGAGT 57.424 50.000 0.00 0.00 0.00 3.85
5690 10029 2.402564 GATGAGGGAGATTGGAGTGGA 58.597 52.381 0.00 0.00 0.00 4.02
5691 10030 1.573108 TGAGGGAGATTGGAGTGGAC 58.427 55.000 0.00 0.00 0.00 4.02
5793 10180 4.338118 GTCGGCCATCTGAAATGGAAATTA 59.662 41.667 2.24 0.00 41.64 1.40
5799 10186 4.963276 TCTGAAATGGAAATTACCTGCG 57.037 40.909 0.00 0.00 0.00 5.18
5835 10222 3.565482 CGCCACCATTTAATCTAGTGCAT 59.435 43.478 0.00 0.00 0.00 3.96
5836 10223 4.754618 CGCCACCATTTAATCTAGTGCATA 59.245 41.667 0.00 0.00 0.00 3.14
5837 10224 5.412594 CGCCACCATTTAATCTAGTGCATAT 59.587 40.000 0.00 0.00 0.00 1.78
5838 10225 6.593770 CGCCACCATTTAATCTAGTGCATATA 59.406 38.462 0.00 0.00 0.00 0.86
5839 10226 7.413000 CGCCACCATTTAATCTAGTGCATATAC 60.413 40.741 0.00 0.00 0.00 1.47
5840 10227 7.607991 GCCACCATTTAATCTAGTGCATATACT 59.392 37.037 0.00 0.00 34.71 2.12
5916 10303 1.235724 ACACAACGCCTCCTAAAAGC 58.764 50.000 0.00 0.00 0.00 3.51
5917 10304 1.234821 CACAACGCCTCCTAAAAGCA 58.765 50.000 0.00 0.00 0.00 3.91
5919 10306 0.165944 CAACGCCTCCTAAAAGCACG 59.834 55.000 0.00 0.00 0.00 5.34
5922 10309 1.377333 GCCTCCTAAAAGCACGCCT 60.377 57.895 0.00 0.00 0.00 5.52
5944 10331 2.766828 AGTCCTAGCTAGGCGTCATTTT 59.233 45.455 31.76 9.89 43.31 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.709613 GCCATATTTGATTCTTTTGCTCAAGAT 59.290 33.333 0.00 0.00 32.69 2.40
2 3 6.257193 GGCCATATTTGATTCTTTTGCTCAAG 59.743 38.462 0.00 0.00 31.11 3.02
3 4 6.108015 GGCCATATTTGATTCTTTTGCTCAA 58.892 36.000 0.00 0.00 0.00 3.02
4 5 5.663456 GGCCATATTTGATTCTTTTGCTCA 58.337 37.500 0.00 0.00 0.00 4.26
5 6 4.741676 CGGCCATATTTGATTCTTTTGCTC 59.258 41.667 2.24 0.00 0.00 4.26
6 7 4.402155 TCGGCCATATTTGATTCTTTTGCT 59.598 37.500 2.24 0.00 0.00 3.91
8 9 7.775397 AATTCGGCCATATTTGATTCTTTTG 57.225 32.000 2.24 0.00 0.00 2.44
9 10 8.791327 AAAATTCGGCCATATTTGATTCTTTT 57.209 26.923 2.24 0.00 0.00 2.27
12 13 7.111247 TGAAAATTCGGCCATATTTGATTCT 57.889 32.000 2.24 0.00 0.00 2.40
13 14 7.769272 TTGAAAATTCGGCCATATTTGATTC 57.231 32.000 2.24 3.53 0.00 2.52
14 15 7.769970 ACATTGAAAATTCGGCCATATTTGATT 59.230 29.630 2.24 0.00 0.00 2.57
15 16 7.274447 ACATTGAAAATTCGGCCATATTTGAT 58.726 30.769 2.24 1.38 0.00 2.57
17 18 6.907206 ACATTGAAAATTCGGCCATATTTG 57.093 33.333 2.24 0.00 0.00 2.32
18 19 9.612066 AATTACATTGAAAATTCGGCCATATTT 57.388 25.926 2.24 4.80 0.00 1.40
19 20 9.044150 CAATTACATTGAAAATTCGGCCATATT 57.956 29.630 2.24 0.00 42.83 1.28
42 43 2.225019 CAGTTCGAGTTGCTTGCTCAAT 59.775 45.455 0.00 0.00 33.45 2.57
46 47 0.106708 TCCAGTTCGAGTTGCTTGCT 59.893 50.000 0.00 0.00 0.00 3.91
143 144 9.456147 ACGATACTAATATCTTCAGCTGTAGAT 57.544 33.333 30.86 30.86 35.88 1.98
144 145 8.850007 ACGATACTAATATCTTCAGCTGTAGA 57.150 34.615 23.22 23.22 35.88 2.59
154 195 7.014038 ACAAACCTCGGACGATACTAATATCTT 59.986 37.037 0.00 0.00 35.88 2.40
157 198 6.567321 CGACAAACCTCGGACGATACTAATAT 60.567 42.308 0.00 0.00 0.00 1.28
171 220 2.734670 TGTTACAGTCGACAAACCTCG 58.265 47.619 19.50 0.00 34.83 4.63
181 230 1.000955 AGCCCTCACTTGTTACAGTCG 59.999 52.381 0.00 0.00 0.00 4.18
185 234 1.071699 GTCCAGCCCTCACTTGTTACA 59.928 52.381 0.00 0.00 0.00 2.41
210 260 2.737376 GAACACGCCCGACAGGTC 60.737 66.667 0.00 0.00 38.26 3.85
282 332 4.966787 GGCGGGAAAGGTGGTGCA 62.967 66.667 0.00 0.00 0.00 4.57
473 523 1.104577 GCCGTGGAGGTTTGGTTTGA 61.105 55.000 0.00 0.00 43.70 2.69
555 605 1.519455 GTCCTTCGATCGCAGGTGG 60.519 63.158 28.96 16.59 30.54 4.61
556 606 1.874019 CGTCCTTCGATCGCAGGTG 60.874 63.158 28.96 20.15 42.86 4.00
695 745 2.126031 GAAGTCGTGACGGCTCCC 60.126 66.667 14.17 4.20 42.48 4.30
924 978 2.231540 CTCCTCCTTCCTCCTCGGGT 62.232 65.000 0.00 0.00 0.00 5.28
925 979 1.456705 CTCCTCCTTCCTCCTCGGG 60.457 68.421 0.00 0.00 0.00 5.14
926 980 1.456705 CCTCCTCCTTCCTCCTCGG 60.457 68.421 0.00 0.00 0.00 4.63
987 1041 2.332514 CGCATTATGCCCTTGCCG 59.667 61.111 11.90 0.00 41.12 5.69
1226 1377 1.587946 GCGGCGGAAAAATAAATGCAG 59.412 47.619 9.78 0.00 0.00 4.41
1229 1380 2.851824 GACAGCGGCGGAAAAATAAATG 59.148 45.455 9.78 0.00 0.00 2.32
1230 1381 2.477189 CGACAGCGGCGGAAAAATAAAT 60.477 45.455 9.78 0.00 0.00 1.40
1353 2112 1.343069 CCTAGGCTGTACCCATCCTC 58.657 60.000 0.00 0.00 38.21 3.71
1440 2199 5.294552 CCCACAAGCTATTTCTACTGTTAGC 59.705 44.000 0.00 1.18 37.84 3.09
1552 2312 4.638421 TCATCACCTTATTTGGCTAAACCG 59.362 41.667 0.00 0.00 43.94 4.44
1606 2366 7.278646 GCATCACTTATTACTTGATGAGTGTCA 59.721 37.037 13.63 0.00 46.45 3.58
1624 2421 6.449698 CAACAGACCATTTTAAGCATCACTT 58.550 36.000 0.00 0.00 42.76 3.16
1770 2567 6.463049 CGTTCTATTCATCTTCCACCCTGTAT 60.463 42.308 0.00 0.00 0.00 2.29
1826 2624 9.927668 ACCACTATAAATTCCAAAAACAATGAG 57.072 29.630 0.00 0.00 0.00 2.90
2097 3126 1.403679 TCACAAACAAAGTTCAGCCCG 59.596 47.619 0.00 0.00 0.00 6.13
2253 3282 7.145985 TCATGCGAGACTTACCATTTATACTC 58.854 38.462 0.00 0.00 0.00 2.59
2353 3468 5.125356 TGCAGTGACAGAAAGAGATCAAAA 58.875 37.500 0.00 0.00 0.00 2.44
2451 3566 8.370182 TCTATTAGCATGTTCTCATCAATGCTA 58.630 33.333 11.16 11.16 33.63 3.49
2463 3578 8.668353 TGAATTGTCTTGTCTATTAGCATGTTC 58.332 33.333 0.00 0.00 0.00 3.18
2583 4025 9.454859 AGACATTTTGGATAAGAACTTAGGAAG 57.545 33.333 0.00 0.00 0.00 3.46
2589 4031 7.004086 TGGACAGACATTTTGGATAAGAACTT 58.996 34.615 0.00 0.00 0.00 2.66
2631 4073 5.904362 ATGTTGACCCATAGAAGAAAAGC 57.096 39.130 0.00 0.00 0.00 3.51
2674 4116 8.025243 TCTTTACTGACGGAACATTTAATGTC 57.975 34.615 11.24 5.23 44.07 3.06
2689 4131 5.062308 CGGCTGATAGTGTTTCTTTACTGAC 59.938 44.000 0.00 0.00 0.00 3.51
2697 4139 2.283298 CATGCGGCTGATAGTGTTTCT 58.717 47.619 0.00 0.00 0.00 2.52
2730 4172 3.641434 ATCACATGAGGCTGCTACTTT 57.359 42.857 0.00 0.00 0.00 2.66
2742 4184 9.898152 TGTAACCAAGTAATATCAATCACATGA 57.102 29.630 0.00 0.00 0.00 3.07
2808 4250 5.287674 AGCATGTACATAGCTCTCAATGT 57.712 39.130 20.30 5.25 39.56 2.71
2809 4251 5.560375 GCAAGCATGTACATAGCTCTCAATG 60.560 44.000 23.84 19.77 37.70 2.82
2964 4413 5.344743 AATATCGGATCATCGCTAACCAT 57.655 39.130 0.00 0.00 0.00 3.55
2997 4446 4.598807 AGGATCACTGTTATCCATGGCATA 59.401 41.667 20.08 3.34 44.62 3.14
3095 4546 7.101700 GCTACCTATAACAGTTTGTGGTACTT 58.898 38.462 0.00 0.00 28.29 2.24
3097 4548 6.400568 TGCTACCTATAACAGTTTGTGGTAC 58.599 40.000 0.00 0.00 28.29 3.34
3098 4549 6.608539 TGCTACCTATAACAGTTTGTGGTA 57.391 37.500 0.00 1.45 30.97 3.25
3099 4550 5.492855 TGCTACCTATAACAGTTTGTGGT 57.507 39.130 0.00 0.25 0.00 4.16
3100 4551 6.430000 ACTTTGCTACCTATAACAGTTTGTGG 59.570 38.462 0.00 0.00 0.00 4.17
3102 4553 6.430000 CCACTTTGCTACCTATAACAGTTTGT 59.570 38.462 0.00 0.00 0.00 2.83
3104 4555 5.414765 GCCACTTTGCTACCTATAACAGTTT 59.585 40.000 0.00 0.00 0.00 2.66
3109 4560 3.528532 ACGCCACTTTGCTACCTATAAC 58.471 45.455 0.00 0.00 0.00 1.89
3118 4574 0.534877 TCACATGACGCCACTTTGCT 60.535 50.000 0.00 0.00 0.00 3.91
3184 4640 6.000219 CCAGCCAGCTGAGTACATAAAATAT 59.000 40.000 21.01 0.00 46.30 1.28
3323 4779 6.435430 TGAATCATGGGATAACGAAAAGTG 57.565 37.500 0.00 0.00 32.09 3.16
3324 4780 7.056635 AGATGAATCATGGGATAACGAAAAGT 58.943 34.615 0.00 0.00 32.09 2.66
3328 4784 6.425210 AGAGATGAATCATGGGATAACGAA 57.575 37.500 0.00 0.00 32.09 3.85
3337 4793 4.135306 CCTGGTGAAGAGATGAATCATGG 58.865 47.826 0.00 0.00 0.00 3.66
3880 5344 3.573967 ACAGGTGGAAAAGAATCGCAATT 59.426 39.130 0.00 0.00 0.00 2.32
4002 5466 2.052237 GTTCGTGTGCGGTGCTTG 60.052 61.111 0.00 0.00 38.89 4.01
4016 5480 5.354513 GGAGTTATTTGCCAGTCTAAGGTTC 59.645 44.000 0.00 0.00 0.00 3.62
4065 5529 1.546029 GGATGGAAAACACTGCCTTCC 59.454 52.381 0.00 0.00 38.39 3.46
4071 5535 2.766313 TCAGTCGGATGGAAAACACTG 58.234 47.619 0.00 0.00 33.90 3.66
4073 5537 3.502211 ACAATCAGTCGGATGGAAAACAC 59.498 43.478 0.00 0.00 36.02 3.32
4104 5568 3.242549 TGTCATGCTGCAAAACAACAA 57.757 38.095 6.36 0.00 0.00 2.83
4216 5682 0.179092 GTATACACCGCACCCACTCC 60.179 60.000 0.00 0.00 0.00 3.85
4400 5866 4.049186 AGACAGTTGTAACAAGTACAGCG 58.951 43.478 0.00 0.00 45.76 5.18
4404 5870 6.456449 CCACACAAGACAGTTGTAACAAGTAC 60.456 42.308 0.00 0.00 0.00 2.73
4405 5871 5.583061 CCACACAAGACAGTTGTAACAAGTA 59.417 40.000 0.00 0.00 0.00 2.24
4406 5872 4.394920 CCACACAAGACAGTTGTAACAAGT 59.605 41.667 0.00 0.00 0.00 3.16
4487 6078 2.871096 TTCCCTGTAACGGCAATCTT 57.129 45.000 0.00 0.00 0.00 2.40
4570 6161 0.533491 CCCCGATGACGTTCACCTTA 59.467 55.000 0.00 0.00 37.88 2.69
4606 6197 2.856032 CTCACGCACAGCTTTCCG 59.144 61.111 0.00 0.00 0.00 4.30
4727 6318 1.657094 CCGTATTTCGAAAGGACACCG 59.343 52.381 16.80 10.68 42.86 4.94
4731 6322 0.648958 CGGCCGTATTTCGAAAGGAC 59.351 55.000 19.50 13.06 42.86 3.85
4738 6329 0.247379 CGGTTTTCGGCCGTATTTCG 60.247 55.000 27.15 19.93 43.84 3.46
4739 6330 3.591442 CGGTTTTCGGCCGTATTTC 57.409 52.632 27.15 12.34 43.84 2.17
4749 6340 1.659098 GATAGGTGAGTGCGGTTTTCG 59.341 52.381 0.00 0.00 42.76 3.46
4750 6341 2.007608 GGATAGGTGAGTGCGGTTTTC 58.992 52.381 0.00 0.00 0.00 2.29
4751 6342 1.674817 CGGATAGGTGAGTGCGGTTTT 60.675 52.381 0.00 0.00 0.00 2.43
4752 6343 0.108329 CGGATAGGTGAGTGCGGTTT 60.108 55.000 0.00 0.00 0.00 3.27
4753 6344 1.255667 ACGGATAGGTGAGTGCGGTT 61.256 55.000 0.00 0.00 33.25 4.44
4754 6345 1.664321 GACGGATAGGTGAGTGCGGT 61.664 60.000 0.00 0.00 33.25 5.68
4755 6346 1.065928 GACGGATAGGTGAGTGCGG 59.934 63.158 0.00 0.00 33.25 5.69
4756 6347 1.065928 GGACGGATAGGTGAGTGCG 59.934 63.158 0.00 0.00 35.21 5.34
5036 8861 1.078143 AATGCCGAGAAGCTGGGTC 60.078 57.895 0.00 0.00 31.81 4.46
5037 8862 1.377725 CAATGCCGAGAAGCTGGGT 60.378 57.895 0.00 0.00 31.81 4.51
5039 8864 0.942962 GATCAATGCCGAGAAGCTGG 59.057 55.000 0.00 0.00 0.00 4.85
5040 8865 0.580578 CGATCAATGCCGAGAAGCTG 59.419 55.000 0.00 0.00 0.00 4.24
5042 8867 0.579156 GTCGATCAATGCCGAGAAGC 59.421 55.000 0.00 0.00 35.31 3.86
5046 8871 3.448686 ACTAAAGTCGATCAATGCCGAG 58.551 45.455 0.00 0.00 35.31 4.63
5048 8873 4.207224 CACTACTAAAGTCGATCAATGCCG 59.793 45.833 0.00 0.00 35.76 5.69
5153 8978 2.161609 CCTTCATTCCACCTAACAACGC 59.838 50.000 0.00 0.00 0.00 4.84
5154 8979 2.161609 GCCTTCATTCCACCTAACAACG 59.838 50.000 0.00 0.00 0.00 4.10
5171 9002 2.124570 CGTAGCCAGGCATGCCTT 60.125 61.111 36.92 24.63 45.70 4.35
5225 9060 2.102578 CCCATCCCCATCACAAAGAAC 58.897 52.381 0.00 0.00 0.00 3.01
5240 9077 2.019807 ATCCAATTGCCATCCCCATC 57.980 50.000 0.00 0.00 0.00 3.51
5263 9311 1.567649 AGCAACATCCACCATCCATCT 59.432 47.619 0.00 0.00 0.00 2.90
5289 9337 3.387050 GGGATATAGGTTGAACCGTCAGT 59.613 47.826 8.98 0.00 44.90 3.41
5295 9343 2.922740 TGCGGGATATAGGTTGAACC 57.077 50.000 6.16 6.16 38.99 3.62
5324 9372 4.524053 AGGTTGAACCGTTCTCTTTTTCT 58.476 39.130 8.98 0.00 44.90 2.52
5330 9423 6.540438 TTGATATAGGTTGAACCGTTCTCT 57.460 37.500 8.98 9.39 44.90 3.10
5331 9424 6.292919 GCATTGATATAGGTTGAACCGTTCTC 60.293 42.308 8.98 5.97 44.90 2.87
5363 9456 4.691860 TGCTAGACTTCCGTTGTACTAC 57.308 45.455 0.00 0.00 0.00 2.73
5364 9457 5.416639 TCATTGCTAGACTTCCGTTGTACTA 59.583 40.000 0.00 0.00 0.00 1.82
5365 9458 4.219944 TCATTGCTAGACTTCCGTTGTACT 59.780 41.667 0.00 0.00 0.00 2.73
5369 9487 4.183865 TCATCATTGCTAGACTTCCGTTG 58.816 43.478 0.00 0.00 0.00 4.10
5372 9490 5.745514 CATTTCATCATTGCTAGACTTCCG 58.254 41.667 0.00 0.00 0.00 4.30
5407 9525 2.749280 TACACCAGTGCTCACATCAG 57.251 50.000 2.63 0.00 0.00 2.90
5433 9551 2.272923 GGTTTCCAACCCCATTCGG 58.727 57.895 0.00 0.00 46.12 4.30
5455 9599 4.937620 CACGACTACTTGTACCACCTAGTA 59.062 45.833 0.00 0.00 0.00 1.82
5456 9600 3.755378 CACGACTACTTGTACCACCTAGT 59.245 47.826 0.00 0.00 0.00 2.57
5457 9601 3.755378 ACACGACTACTTGTACCACCTAG 59.245 47.826 0.00 0.00 0.00 3.02
5473 9617 1.010350 ACACGAGACACGACACGAC 60.010 57.895 0.00 0.00 45.77 4.34
5475 9619 2.009226 CCACACGAGACACGACACG 61.009 63.158 0.00 0.00 45.77 4.49
5476 9620 2.300787 GCCACACGAGACACGACAC 61.301 63.158 0.00 0.00 45.77 3.67
5477 9621 2.027024 GCCACACGAGACACGACA 59.973 61.111 0.00 0.00 45.77 4.35
5478 9622 2.016704 CAGCCACACGAGACACGAC 61.017 63.158 0.00 0.00 45.77 4.34
5479 9623 2.335011 CAGCCACACGAGACACGA 59.665 61.111 0.00 0.00 45.77 4.35
5481 9625 0.108615 ATAGCAGCCACACGAGACAC 60.109 55.000 0.00 0.00 0.00 3.67
5482 9626 0.108662 CATAGCAGCCACACGAGACA 60.109 55.000 0.00 0.00 0.00 3.41
5485 9644 0.108662 TCACATAGCAGCCACACGAG 60.109 55.000 0.00 0.00 0.00 4.18
5525 9684 3.238788 TCTAGTCTCTGTTGACCACCA 57.761 47.619 0.00 0.00 37.66 4.17
5543 9762 9.570488 GTAGTCTCACTAACGATATTTTGTTCT 57.430 33.333 0.00 0.00 31.62 3.01
5545 9764 7.763071 GGGTAGTCTCACTAACGATATTTTGTT 59.237 37.037 0.00 0.00 39.26 2.83
5547 9766 6.417044 CGGGTAGTCTCACTAACGATATTTTG 59.583 42.308 0.00 0.00 39.26 2.44
5548 9767 6.319658 TCGGGTAGTCTCACTAACGATATTTT 59.680 38.462 0.00 0.00 39.26 1.82
5552 9771 4.406648 TCGGGTAGTCTCACTAACGATA 57.593 45.455 0.00 0.00 39.26 2.92
5553 9772 3.272574 TCGGGTAGTCTCACTAACGAT 57.727 47.619 0.00 0.00 39.26 3.73
5554 9773 2.768253 TCGGGTAGTCTCACTAACGA 57.232 50.000 0.00 7.33 39.26 3.85
5555 9774 2.746362 ACTTCGGGTAGTCTCACTAACG 59.254 50.000 3.78 3.78 39.26 3.18
5556 9775 5.886960 TTACTTCGGGTAGTCTCACTAAC 57.113 43.478 0.00 0.00 37.67 2.34
5557 9776 8.757982 ATTATTACTTCGGGTAGTCTCACTAA 57.242 34.615 0.00 0.00 31.62 2.24
5558 9777 8.757982 AATTATTACTTCGGGTAGTCTCACTA 57.242 34.615 0.00 0.00 0.00 2.74
5559 9778 7.657023 AATTATTACTTCGGGTAGTCTCACT 57.343 36.000 0.00 0.00 0.00 3.41
5650 9989 4.327982 TCCATCATCCGCAAAAACAAAA 57.672 36.364 0.00 0.00 0.00 2.44
5651 9990 4.021632 TCATCCATCATCCGCAAAAACAAA 60.022 37.500 0.00 0.00 0.00 2.83
5653 9992 3.087781 TCATCCATCATCCGCAAAAACA 58.912 40.909 0.00 0.00 0.00 2.83
5654 9993 3.489738 CCTCATCCATCATCCGCAAAAAC 60.490 47.826 0.00 0.00 0.00 2.43
5656 9995 2.300433 CCTCATCCATCATCCGCAAAA 58.700 47.619 0.00 0.00 0.00 2.44
5659 9998 0.763986 TCCCTCATCCATCATCCGCA 60.764 55.000 0.00 0.00 0.00 5.69
5660 9999 0.036577 CTCCCTCATCCATCATCCGC 60.037 60.000 0.00 0.00 0.00 5.54
5661 10000 1.637338 TCTCCCTCATCCATCATCCG 58.363 55.000 0.00 0.00 0.00 4.18
5662 10001 3.308259 CCAATCTCCCTCATCCATCATCC 60.308 52.174 0.00 0.00 0.00 3.51
5663 10002 3.586174 TCCAATCTCCCTCATCCATCATC 59.414 47.826 0.00 0.00 0.00 2.92
5664 10003 3.587951 CTCCAATCTCCCTCATCCATCAT 59.412 47.826 0.00 0.00 0.00 2.45
5665 10004 2.977580 CTCCAATCTCCCTCATCCATCA 59.022 50.000 0.00 0.00 0.00 3.07
5666 10005 2.978278 ACTCCAATCTCCCTCATCCATC 59.022 50.000 0.00 0.00 0.00 3.51
5668 10007 2.121948 CACTCCAATCTCCCTCATCCA 58.878 52.381 0.00 0.00 0.00 3.41
5670 10009 2.103941 GTCCACTCCAATCTCCCTCATC 59.896 54.545 0.00 0.00 0.00 2.92
5672 10011 1.573108 GTCCACTCCAATCTCCCTCA 58.427 55.000 0.00 0.00 0.00 3.86
5673 10012 0.833949 GGTCCACTCCAATCTCCCTC 59.166 60.000 0.00 0.00 0.00 4.30
5676 10015 1.522569 CCGGTCCACTCCAATCTCC 59.477 63.158 0.00 0.00 0.00 3.71
5678 10017 2.670148 GGCCGGTCCACTCCAATCT 61.670 63.158 1.90 0.00 34.01 2.40
5679 10018 2.124695 GGCCGGTCCACTCCAATC 60.125 66.667 1.90 0.00 34.01 2.67
5690 10029 0.828022 TGAATCATTAGACGGCCGGT 59.172 50.000 31.76 19.09 0.00 5.28
5691 10030 2.069273 GATGAATCATTAGACGGCCGG 58.931 52.381 31.76 10.66 0.00 6.13
5764 10151 4.633126 CCATTTCAGATGGCCGACATATAG 59.367 45.833 0.00 0.00 40.72 1.31
5846 10233 8.570488 CCTGCTATGACATATTTTGCTTTGATA 58.430 33.333 0.00 0.00 0.00 2.15
5848 10235 6.681120 GCCTGCTATGACATATTTTGCTTTGA 60.681 38.462 0.00 0.00 0.00 2.69
5888 10275 0.672401 AGGCGTTGTGTATGAACGGG 60.672 55.000 0.00 0.00 45.01 5.28
5922 10309 2.953284 ATGACGCCTAGCTAGGACTA 57.047 50.000 38.74 22.47 46.63 2.59
5937 10324 3.654414 ACGGAGAGTGACAGAAAATGAC 58.346 45.455 0.00 0.00 0.00 3.06
5944 10331 2.842320 CGAGACGGAGAGTGACAGA 58.158 57.895 0.00 0.00 0.00 3.41
5965 10352 4.796231 CTCTTCCACGACCGGCCG 62.796 72.222 21.04 21.04 0.00 6.13
5966 10353 3.358076 CTCTCTTCCACGACCGGCC 62.358 68.421 0.00 0.00 0.00 6.13
5973 10360 8.994429 ATAATAATATGAAGCTCTCTTCCACG 57.006 34.615 0.00 0.00 46.28 4.94
6004 10395 1.982073 GCCGCATCAGGAAAAGTCGG 61.982 60.000 0.00 0.00 38.51 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.