Multiple sequence alignment - TraesCS7A01G328900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G328900 chr7A 100.000 3389 0 0 1 3389 478504627 478501239 0.000000e+00 6259.0
1 TraesCS7A01G328900 chr7A 80.402 199 37 2 8 204 675584714 675584516 2.110000e-32 150.0
2 TraesCS7A01G328900 chr7A 92.647 68 5 0 2964 3031 478501622 478501555 7.740000e-17 99.0
3 TraesCS7A01G328900 chr7A 92.647 68 5 0 3006 3073 478501664 478501597 7.740000e-17 99.0
4 TraesCS7A01G328900 chr7D 96.284 2476 83 5 917 3389 416238802 416236333 0.000000e+00 4054.0
5 TraesCS7A01G328900 chr7D 82.915 199 32 2 8 204 585554139 585553941 9.660000e-41 178.0
6 TraesCS7A01G328900 chr7D 92.647 68 5 0 3006 3073 416236758 416236691 7.740000e-17 99.0
7 TraesCS7A01G328900 chr7D 84.524 84 12 1 775 857 576640324 576640241 7.790000e-12 82.4
8 TraesCS7A01G328900 chr7B 94.938 2489 80 9 920 3389 431663955 431661494 0.000000e+00 3856.0
9 TraesCS7A01G328900 chr7B 85.950 484 53 8 365 837 431664475 431663996 1.400000e-138 503.0
10 TraesCS7A01G328900 chr7B 82.000 200 32 3 8 204 654914055 654913857 2.090000e-37 167.0
11 TraesCS7A01G328900 chr7B 92.105 76 6 0 2998 3073 431661927 431661852 1.290000e-19 108.0
12 TraesCS7A01G328900 chr2A 88.889 1296 121 15 1085 2367 727918573 727917288 0.000000e+00 1574.0
13 TraesCS7A01G328900 chr2A 85.829 374 47 4 1257 1630 419652339 419652706 3.170000e-105 392.0
14 TraesCS7A01G328900 chr2A 79.477 497 86 16 1880 2366 727244915 727244425 4.190000e-89 339.0
15 TraesCS7A01G328900 chr2A 79.293 396 70 9 1130 1519 727245634 727245245 2.000000e-67 267.0
16 TraesCS7A01G328900 chr2B 87.557 1318 126 26 1085 2379 719294266 719292964 0.000000e+00 1491.0
17 TraesCS7A01G328900 chr2B 80.971 515 72 19 366 857 584726844 584726333 5.300000e-103 385.0
18 TraesCS7A01G328900 chr2B 79.615 520 74 20 366 857 712075170 712075685 9.000000e-91 344.0
19 TraesCS7A01G328900 chr2B 78.182 495 96 12 1880 2366 718969535 718969045 4.250000e-79 305.0
20 TraesCS7A01G328900 chr2B 79.337 392 77 4 1130 1519 718970251 718969862 4.310000e-69 272.0
21 TraesCS7A01G328900 chr4B 81.165 515 71 20 366 857 624151946 624151435 1.140000e-104 390.0
22 TraesCS7A01G328900 chr4B 85.561 374 48 4 1257 1630 612329482 612329849 1.470000e-103 387.0
23 TraesCS7A01G328900 chr3A 80.897 513 74 15 366 857 1759089 1759598 1.910000e-102 383.0
24 TraesCS7A01G328900 chr6B 80.539 519 71 20 366 857 469790444 469790959 4.130000e-99 372.0
25 TraesCS7A01G328900 chr6B 78.311 521 82 17 366 857 46875569 46875051 1.180000e-79 307.0
26 TraesCS7A01G328900 chr4D 79.423 520 75 21 366 857 459552689 459553204 4.190000e-89 339.0
27 TraesCS7A01G328900 chr2D 79.276 497 87 16 1880 2366 592791037 592790547 1.950000e-87 333.0
28 TraesCS7A01G328900 chr2D 79.847 392 75 4 1130 1519 592791756 592791367 1.990000e-72 283.0
29 TraesCS7A01G328900 chr2D 94.444 162 9 0 204 365 362930969 362930808 2.020000e-62 250.0
30 TraesCS7A01G328900 chr2D 92.857 168 12 0 203 370 87407526 87407359 9.390000e-61 244.0
31 TraesCS7A01G328900 chr1B 79.038 520 77 22 366 857 572273417 572273932 9.070000e-86 327.0
32 TraesCS7A01G328900 chr5B 95.092 163 7 1 204 365 498886146 498885984 4.340000e-64 255.0
33 TraesCS7A01G328900 chr5D 93.491 169 11 0 197 365 53583070 53583238 5.610000e-63 252.0
34 TraesCS7A01G328900 chr1D 93.491 169 10 1 204 372 463382066 463381899 2.020000e-62 250.0
35 TraesCS7A01G328900 chr1D 93.827 162 10 0 204 365 230842853 230842692 9.390000e-61 244.0
36 TraesCS7A01G328900 chr1D 93.827 162 10 0 204 365 338937212 338937373 9.390000e-61 244.0
37 TraesCS7A01G328900 chr3D 92.857 168 12 0 203 370 459077268 459077435 9.390000e-61 244.0
38 TraesCS7A01G328900 chr4A 92.857 168 11 1 201 367 517406636 517406469 3.380000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G328900 chr7A 478501239 478504627 3388 True 2152.333333 6259 95.098000 1 3389 3 chr7A.!!$R2 3388
1 TraesCS7A01G328900 chr7D 416236333 416238802 2469 True 2076.500000 4054 94.465500 917 3389 2 chr7D.!!$R3 2472
2 TraesCS7A01G328900 chr7B 431661494 431664475 2981 True 1489.000000 3856 90.997667 365 3389 3 chr7B.!!$R2 3024
3 TraesCS7A01G328900 chr2A 727917288 727918573 1285 True 1574.000000 1574 88.889000 1085 2367 1 chr2A.!!$R1 1282
4 TraesCS7A01G328900 chr2A 727244425 727245634 1209 True 303.000000 339 79.385000 1130 2366 2 chr2A.!!$R2 1236
5 TraesCS7A01G328900 chr2B 719292964 719294266 1302 True 1491.000000 1491 87.557000 1085 2379 1 chr2B.!!$R2 1294
6 TraesCS7A01G328900 chr2B 584726333 584726844 511 True 385.000000 385 80.971000 366 857 1 chr2B.!!$R1 491
7 TraesCS7A01G328900 chr2B 712075170 712075685 515 False 344.000000 344 79.615000 366 857 1 chr2B.!!$F1 491
8 TraesCS7A01G328900 chr2B 718969045 718970251 1206 True 288.500000 305 78.759500 1130 2366 2 chr2B.!!$R3 1236
9 TraesCS7A01G328900 chr4B 624151435 624151946 511 True 390.000000 390 81.165000 366 857 1 chr4B.!!$R1 491
10 TraesCS7A01G328900 chr3A 1759089 1759598 509 False 383.000000 383 80.897000 366 857 1 chr3A.!!$F1 491
11 TraesCS7A01G328900 chr6B 469790444 469790959 515 False 372.000000 372 80.539000 366 857 1 chr6B.!!$F1 491
12 TraesCS7A01G328900 chr6B 46875051 46875569 518 True 307.000000 307 78.311000 366 857 1 chr6B.!!$R1 491
13 TraesCS7A01G328900 chr4D 459552689 459553204 515 False 339.000000 339 79.423000 366 857 1 chr4D.!!$F1 491
14 TraesCS7A01G328900 chr2D 592790547 592791756 1209 True 308.000000 333 79.561500 1130 2366 2 chr2D.!!$R3 1236
15 TraesCS7A01G328900 chr1B 572273417 572273932 515 False 327.000000 327 79.038000 366 857 1 chr1B.!!$F1 491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.032813 AGCCCCAATACATGCAGCTT 60.033 50.0 0.0 0.0 33.54 3.74 F
180 181 0.038892 GCGTCGGGTCTTCTGTTGTA 60.039 55.0 0.0 0.0 0.00 2.41 F
828 866 0.106769 TTGGGCAACTCTCTTGTGCA 60.107 50.0 0.0 0.0 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1506 1561 0.601558 TGTCAAGGTCCTGCTCGTAC 59.398 55.000 0.00 0.0 0.0 3.67 R
2007 2101 3.177884 AACCAGCAGCCCACCAGA 61.178 61.111 0.00 0.0 0.0 3.86 R
2604 2701 1.697432 TGTCATCTCCTTCACCGGTTT 59.303 47.619 2.97 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.740364 AGGTACTCTCAGCCCCAAT 57.260 52.632 0.00 0.00 0.00 3.16
27 28 2.868964 AGGTACTCTCAGCCCCAATA 57.131 50.000 0.00 0.00 0.00 1.90
28 29 2.399580 AGGTACTCTCAGCCCCAATAC 58.600 52.381 0.00 0.00 0.00 1.89
29 30 2.116238 GGTACTCTCAGCCCCAATACA 58.884 52.381 0.00 0.00 0.00 2.29
30 31 2.706190 GGTACTCTCAGCCCCAATACAT 59.294 50.000 0.00 0.00 0.00 2.29
31 32 3.495100 GGTACTCTCAGCCCCAATACATG 60.495 52.174 0.00 0.00 0.00 3.21
32 33 1.133976 ACTCTCAGCCCCAATACATGC 60.134 52.381 0.00 0.00 0.00 4.06
33 34 0.918258 TCTCAGCCCCAATACATGCA 59.082 50.000 0.00 0.00 0.00 3.96
34 35 1.134007 TCTCAGCCCCAATACATGCAG 60.134 52.381 0.00 0.00 0.00 4.41
35 36 0.752743 TCAGCCCCAATACATGCAGC 60.753 55.000 0.00 0.00 0.00 5.25
36 37 0.754217 CAGCCCCAATACATGCAGCT 60.754 55.000 0.00 0.00 36.60 4.24
37 38 0.032813 AGCCCCAATACATGCAGCTT 60.033 50.000 0.00 0.00 33.54 3.74
38 39 0.386838 GCCCCAATACATGCAGCTTC 59.613 55.000 0.00 0.00 0.00 3.86
39 40 0.664761 CCCCAATACATGCAGCTTCG 59.335 55.000 0.00 0.00 0.00 3.79
40 41 0.664761 CCCAATACATGCAGCTTCGG 59.335 55.000 0.00 0.00 0.00 4.30
41 42 1.667236 CCAATACATGCAGCTTCGGA 58.333 50.000 0.00 0.00 0.00 4.55
42 43 2.016318 CCAATACATGCAGCTTCGGAA 58.984 47.619 0.00 0.00 0.00 4.30
43 44 2.032550 CCAATACATGCAGCTTCGGAAG 59.967 50.000 13.39 13.39 0.00 3.46
44 45 2.938451 CAATACATGCAGCTTCGGAAGA 59.062 45.455 21.45 0.49 39.20 2.87
59 60 5.521906 TCGGAAGAAACTCTAGATCCATG 57.478 43.478 8.23 0.00 37.03 3.66
60 61 4.956700 TCGGAAGAAACTCTAGATCCATGT 59.043 41.667 8.23 0.00 37.03 3.21
61 62 5.046529 CGGAAGAAACTCTAGATCCATGTG 58.953 45.833 8.23 0.00 0.00 3.21
62 63 5.163509 CGGAAGAAACTCTAGATCCATGTGA 60.164 44.000 8.23 0.00 0.00 3.58
63 64 6.462207 CGGAAGAAACTCTAGATCCATGTGAT 60.462 42.308 8.23 0.00 36.01 3.06
76 77 3.299585 GTGATCGCACGATGACGG 58.700 61.111 10.75 0.00 44.46 4.79
77 78 1.516386 GTGATCGCACGATGACGGT 60.516 57.895 10.75 0.00 44.46 4.83
78 79 1.516169 TGATCGCACGATGACGGTG 60.516 57.895 10.75 0.00 44.46 4.94
79 80 2.860628 GATCGCACGATGACGGTGC 61.861 63.158 10.75 6.83 44.46 5.01
80 81 3.356639 ATCGCACGATGACGGTGCT 62.357 57.895 14.09 0.00 44.46 4.40
81 82 2.835701 ATCGCACGATGACGGTGCTT 62.836 55.000 14.09 0.31 44.46 3.91
82 83 2.667318 CGCACGATGACGGTGCTTT 61.667 57.895 14.09 0.00 44.46 3.51
83 84 1.154413 GCACGATGACGGTGCTTTG 60.154 57.895 9.47 0.00 44.46 2.77
84 85 1.497278 CACGATGACGGTGCTTTGG 59.503 57.895 0.00 0.00 44.46 3.28
85 86 2.325082 ACGATGACGGTGCTTTGGC 61.325 57.895 0.00 0.00 44.46 4.52
86 87 2.324330 CGATGACGGTGCTTTGGCA 61.324 57.895 0.00 0.00 39.96 4.92
95 96 3.094386 TGCTTTGGCATCGTATCCC 57.906 52.632 0.00 0.00 44.28 3.85
96 97 0.465460 TGCTTTGGCATCGTATCCCC 60.465 55.000 0.00 0.00 44.28 4.81
97 98 0.179018 GCTTTGGCATCGTATCCCCT 60.179 55.000 0.00 0.00 38.54 4.79
98 99 1.884235 CTTTGGCATCGTATCCCCTC 58.116 55.000 0.00 0.00 0.00 4.30
99 100 1.417890 CTTTGGCATCGTATCCCCTCT 59.582 52.381 0.00 0.00 0.00 3.69
100 101 1.048601 TTGGCATCGTATCCCCTCTC 58.951 55.000 0.00 0.00 0.00 3.20
101 102 1.179174 TGGCATCGTATCCCCTCTCG 61.179 60.000 0.00 0.00 0.00 4.04
102 103 0.894184 GGCATCGTATCCCCTCTCGA 60.894 60.000 0.00 0.00 36.77 4.04
103 104 0.959553 GCATCGTATCCCCTCTCGAA 59.040 55.000 0.00 0.00 35.99 3.71
104 105 1.068194 GCATCGTATCCCCTCTCGAAG 60.068 57.143 0.00 0.00 35.99 3.79
105 106 2.505405 CATCGTATCCCCTCTCGAAGA 58.495 52.381 0.00 0.00 35.99 2.87
106 107 1.964552 TCGTATCCCCTCTCGAAGAC 58.035 55.000 0.00 0.00 0.00 3.01
107 108 1.489649 TCGTATCCCCTCTCGAAGACT 59.510 52.381 0.00 0.00 0.00 3.24
108 109 2.092538 TCGTATCCCCTCTCGAAGACTT 60.093 50.000 0.00 0.00 0.00 3.01
109 110 2.688958 CGTATCCCCTCTCGAAGACTTT 59.311 50.000 0.00 0.00 0.00 2.66
110 111 3.489398 CGTATCCCCTCTCGAAGACTTTG 60.489 52.174 0.00 0.00 0.00 2.77
111 112 2.011122 TCCCCTCTCGAAGACTTTGT 57.989 50.000 2.30 0.00 0.00 2.83
112 113 1.893801 TCCCCTCTCGAAGACTTTGTC 59.106 52.381 2.30 0.00 0.00 3.18
113 114 1.896465 CCCCTCTCGAAGACTTTGTCT 59.104 52.381 2.30 0.00 45.64 3.41
124 125 4.278975 AGACTTTGTCTTTGGAGCTAGG 57.721 45.455 0.00 0.00 40.28 3.02
125 126 3.904339 AGACTTTGTCTTTGGAGCTAGGA 59.096 43.478 0.00 0.00 40.28 2.94
126 127 4.348168 AGACTTTGTCTTTGGAGCTAGGAA 59.652 41.667 0.00 0.00 40.28 3.36
127 128 5.013599 AGACTTTGTCTTTGGAGCTAGGAAT 59.986 40.000 0.00 0.00 40.28 3.01
128 129 5.635120 ACTTTGTCTTTGGAGCTAGGAATT 58.365 37.500 0.00 0.00 0.00 2.17
129 130 5.474876 ACTTTGTCTTTGGAGCTAGGAATTG 59.525 40.000 0.00 0.00 0.00 2.32
130 131 3.955471 TGTCTTTGGAGCTAGGAATTGG 58.045 45.455 0.00 0.00 0.00 3.16
131 132 2.685388 GTCTTTGGAGCTAGGAATTGGC 59.315 50.000 0.00 0.00 0.00 4.52
132 133 2.308570 TCTTTGGAGCTAGGAATTGGCA 59.691 45.455 0.00 0.00 35.38 4.92
133 134 2.897271 TTGGAGCTAGGAATTGGCAA 57.103 45.000 0.68 0.68 35.38 4.52
134 135 3.386932 TTGGAGCTAGGAATTGGCAAT 57.613 42.857 6.96 6.96 35.38 3.56
135 136 2.658285 TGGAGCTAGGAATTGGCAATG 58.342 47.619 14.47 1.60 35.38 2.82
136 137 1.959282 GGAGCTAGGAATTGGCAATGG 59.041 52.381 14.47 3.62 35.38 3.16
137 138 1.959282 GAGCTAGGAATTGGCAATGGG 59.041 52.381 14.47 3.96 35.38 4.00
138 139 1.570501 AGCTAGGAATTGGCAATGGGA 59.429 47.619 14.47 0.00 35.38 4.37
139 140 1.683385 GCTAGGAATTGGCAATGGGAC 59.317 52.381 14.47 4.67 32.72 4.46
140 141 2.687914 GCTAGGAATTGGCAATGGGACT 60.688 50.000 14.47 11.62 32.72 3.85
141 142 3.435026 GCTAGGAATTGGCAATGGGACTA 60.435 47.826 14.47 12.09 32.72 2.59
142 143 3.303351 AGGAATTGGCAATGGGACTAG 57.697 47.619 14.47 0.00 0.00 2.57
143 144 2.582636 AGGAATTGGCAATGGGACTAGT 59.417 45.455 14.47 0.00 0.00 2.57
144 145 2.689983 GGAATTGGCAATGGGACTAGTG 59.310 50.000 14.47 0.00 0.00 2.74
145 146 2.442236 ATTGGCAATGGGACTAGTGG 57.558 50.000 12.82 0.00 0.00 4.00
146 147 1.367346 TTGGCAATGGGACTAGTGGA 58.633 50.000 0.00 0.00 0.00 4.02
147 148 1.367346 TGGCAATGGGACTAGTGGAA 58.633 50.000 0.00 0.00 0.00 3.53
148 149 1.281867 TGGCAATGGGACTAGTGGAAG 59.718 52.381 0.00 0.00 0.00 3.46
149 150 1.559682 GGCAATGGGACTAGTGGAAGA 59.440 52.381 0.00 0.00 0.00 2.87
150 151 2.173569 GGCAATGGGACTAGTGGAAGAT 59.826 50.000 0.00 0.00 0.00 2.40
151 152 3.209410 GCAATGGGACTAGTGGAAGATG 58.791 50.000 0.00 0.00 0.00 2.90
152 153 3.813443 CAATGGGACTAGTGGAAGATGG 58.187 50.000 0.00 0.00 0.00 3.51
153 154 2.642171 TGGGACTAGTGGAAGATGGT 57.358 50.000 0.00 0.00 0.00 3.55
154 155 2.187958 TGGGACTAGTGGAAGATGGTG 58.812 52.381 0.00 0.00 0.00 4.17
155 156 1.486726 GGGACTAGTGGAAGATGGTGG 59.513 57.143 0.00 0.00 0.00 4.61
156 157 2.188817 GGACTAGTGGAAGATGGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
157 158 2.093447 GGACTAGTGGAAGATGGTGGTG 60.093 54.545 0.00 0.00 0.00 4.17
158 159 2.567615 GACTAGTGGAAGATGGTGGTGT 59.432 50.000 0.00 0.00 0.00 4.16
159 160 2.979678 ACTAGTGGAAGATGGTGGTGTT 59.020 45.455 0.00 0.00 0.00 3.32
160 161 2.276732 AGTGGAAGATGGTGGTGTTG 57.723 50.000 0.00 0.00 0.00 3.33
161 162 1.202927 AGTGGAAGATGGTGGTGTTGG 60.203 52.381 0.00 0.00 0.00 3.77
162 163 0.539438 TGGAAGATGGTGGTGTTGGC 60.539 55.000 0.00 0.00 0.00 4.52
163 164 1.586154 GGAAGATGGTGGTGTTGGCG 61.586 60.000 0.00 0.00 0.00 5.69
164 165 0.889186 GAAGATGGTGGTGTTGGCGT 60.889 55.000 0.00 0.00 0.00 5.68
165 166 0.889186 AAGATGGTGGTGTTGGCGTC 60.889 55.000 0.00 0.00 0.00 5.19
166 167 2.668212 ATGGTGGTGTTGGCGTCG 60.668 61.111 0.00 0.00 0.00 5.12
167 168 4.920112 TGGTGGTGTTGGCGTCGG 62.920 66.667 0.00 0.00 0.00 4.79
169 170 4.922026 GTGGTGTTGGCGTCGGGT 62.922 66.667 0.00 0.00 0.00 5.28
170 171 4.612412 TGGTGTTGGCGTCGGGTC 62.612 66.667 0.00 0.00 0.00 4.46
171 172 4.309950 GGTGTTGGCGTCGGGTCT 62.310 66.667 0.00 0.00 0.00 3.85
172 173 2.280592 GTGTTGGCGTCGGGTCTT 60.281 61.111 0.00 0.00 0.00 3.01
173 174 2.029964 TGTTGGCGTCGGGTCTTC 59.970 61.111 0.00 0.00 0.00 2.87
174 175 2.342648 GTTGGCGTCGGGTCTTCT 59.657 61.111 0.00 0.00 0.00 2.85
175 176 2.027625 GTTGGCGTCGGGTCTTCTG 61.028 63.158 0.00 0.00 0.00 3.02
176 177 2.504274 TTGGCGTCGGGTCTTCTGT 61.504 57.895 0.00 0.00 0.00 3.41
177 178 2.035237 TTGGCGTCGGGTCTTCTGTT 62.035 55.000 0.00 0.00 0.00 3.16
178 179 2.027625 GGCGTCGGGTCTTCTGTTG 61.028 63.158 0.00 0.00 0.00 3.33
179 180 1.300697 GCGTCGGGTCTTCTGTTGT 60.301 57.895 0.00 0.00 0.00 3.32
180 181 0.038892 GCGTCGGGTCTTCTGTTGTA 60.039 55.000 0.00 0.00 0.00 2.41
181 182 1.603678 GCGTCGGGTCTTCTGTTGTAA 60.604 52.381 0.00 0.00 0.00 2.41
182 183 2.056577 CGTCGGGTCTTCTGTTGTAAC 58.943 52.381 0.00 0.00 0.00 2.50
183 184 2.410939 GTCGGGTCTTCTGTTGTAACC 58.589 52.381 0.00 0.00 0.00 2.85
184 185 2.040939 TCGGGTCTTCTGTTGTAACCA 58.959 47.619 0.00 0.00 0.00 3.67
185 186 2.635915 TCGGGTCTTCTGTTGTAACCAT 59.364 45.455 0.00 0.00 0.00 3.55
186 187 2.742053 CGGGTCTTCTGTTGTAACCATG 59.258 50.000 0.00 0.00 0.00 3.66
187 188 3.556213 CGGGTCTTCTGTTGTAACCATGA 60.556 47.826 0.00 0.00 0.00 3.07
188 189 4.589908 GGGTCTTCTGTTGTAACCATGAT 58.410 43.478 0.00 0.00 0.00 2.45
189 190 4.396166 GGGTCTTCTGTTGTAACCATGATG 59.604 45.833 0.00 0.00 0.00 3.07
190 191 4.396166 GGTCTTCTGTTGTAACCATGATGG 59.604 45.833 10.53 10.53 45.02 3.51
191 192 4.396166 GTCTTCTGTTGTAACCATGATGGG 59.604 45.833 17.04 0.00 43.37 4.00
192 193 4.288366 TCTTCTGTTGTAACCATGATGGGA 59.712 41.667 17.04 0.00 43.37 4.37
193 194 4.220693 TCTGTTGTAACCATGATGGGAG 57.779 45.455 17.04 0.28 43.37 4.30
194 195 3.587061 TCTGTTGTAACCATGATGGGAGT 59.413 43.478 17.04 3.12 43.37 3.85
195 196 3.684908 TGTTGTAACCATGATGGGAGTG 58.315 45.455 17.04 0.00 43.37 3.51
196 197 3.073798 TGTTGTAACCATGATGGGAGTGT 59.926 43.478 17.04 0.00 43.37 3.55
197 198 3.348647 TGTAACCATGATGGGAGTGTG 57.651 47.619 17.04 0.00 43.37 3.82
198 199 2.642311 TGTAACCATGATGGGAGTGTGT 59.358 45.455 17.04 0.00 43.37 3.72
199 200 2.205022 AACCATGATGGGAGTGTGTG 57.795 50.000 17.04 0.00 43.37 3.82
200 201 1.361204 ACCATGATGGGAGTGTGTGA 58.639 50.000 17.04 0.00 43.37 3.58
201 202 1.918262 ACCATGATGGGAGTGTGTGAT 59.082 47.619 17.04 0.00 43.37 3.06
202 203 2.294979 CCATGATGGGAGTGTGTGATG 58.705 52.381 2.79 0.00 32.67 3.07
203 204 2.356432 CCATGATGGGAGTGTGTGATGT 60.356 50.000 2.79 0.00 32.67 3.06
204 205 3.118298 CCATGATGGGAGTGTGTGATGTA 60.118 47.826 2.79 0.00 32.67 2.29
205 206 3.610040 TGATGGGAGTGTGTGATGTAC 57.390 47.619 0.00 0.00 0.00 2.90
206 207 3.173151 TGATGGGAGTGTGTGATGTACT 58.827 45.455 0.00 0.00 0.00 2.73
207 208 3.195610 TGATGGGAGTGTGTGATGTACTC 59.804 47.826 0.00 0.00 39.98 2.59
211 212 3.963428 GAGTGTGTGATGTACTCCCTT 57.037 47.619 0.00 0.00 35.86 3.95
212 213 3.851098 GAGTGTGTGATGTACTCCCTTC 58.149 50.000 0.00 0.00 35.86 3.46
213 214 2.231478 AGTGTGTGATGTACTCCCTTCG 59.769 50.000 0.00 0.00 0.00 3.79
214 215 2.029290 GTGTGTGATGTACTCCCTTCGT 60.029 50.000 0.00 0.00 0.00 3.85
215 216 2.631062 TGTGTGATGTACTCCCTTCGTT 59.369 45.455 0.00 0.00 0.00 3.85
216 217 3.251571 GTGTGATGTACTCCCTTCGTTC 58.748 50.000 0.00 0.00 0.00 3.95
217 218 2.232941 TGTGATGTACTCCCTTCGTTCC 59.767 50.000 0.00 0.00 0.00 3.62
218 219 2.496470 GTGATGTACTCCCTTCGTTCCT 59.504 50.000 0.00 0.00 0.00 3.36
219 220 3.698040 GTGATGTACTCCCTTCGTTCCTA 59.302 47.826 0.00 0.00 0.00 2.94
220 221 4.159135 GTGATGTACTCCCTTCGTTCCTAA 59.841 45.833 0.00 0.00 0.00 2.69
221 222 4.773674 TGATGTACTCCCTTCGTTCCTAAA 59.226 41.667 0.00 0.00 0.00 1.85
222 223 5.424252 TGATGTACTCCCTTCGTTCCTAAAT 59.576 40.000 0.00 0.00 0.00 1.40
223 224 6.608405 TGATGTACTCCCTTCGTTCCTAAATA 59.392 38.462 0.00 0.00 0.00 1.40
224 225 7.289317 TGATGTACTCCCTTCGTTCCTAAATAT 59.711 37.037 0.00 0.00 0.00 1.28
225 226 8.716674 ATGTACTCCCTTCGTTCCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
226 227 8.537728 TGTACTCCCTTCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
227 228 8.636213 TGTACTCCCTTCGTTCCTAAATATAAG 58.364 37.037 0.00 0.00 0.00 1.73
228 229 7.672122 ACTCCCTTCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
229 230 7.724287 ACTCCCTTCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
230 231 7.564292 ACTCCCTTCGTTCCTAAATATAAGTCT 59.436 37.037 0.00 0.00 0.00 3.24
231 232 8.315220 TCCCTTCGTTCCTAAATATAAGTCTT 57.685 34.615 0.00 0.00 0.00 3.01
232 233 8.765517 TCCCTTCGTTCCTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 0.00 2.52
233 234 9.392259 CCCTTCGTTCCTAAATATAAGTCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
249 250 9.944376 ATAAGTCTTTTTAGAGATTGCACTACA 57.056 29.630 0.00 0.00 0.00 2.74
250 251 8.677148 AAGTCTTTTTAGAGATTGCACTACAA 57.323 30.769 0.00 0.00 44.01 2.41
251 252 8.677148 AGTCTTTTTAGAGATTGCACTACAAA 57.323 30.769 0.00 0.00 42.86 2.83
252 253 8.560374 AGTCTTTTTAGAGATTGCACTACAAAC 58.440 33.333 0.00 0.00 42.86 2.93
253 254 8.560374 GTCTTTTTAGAGATTGCACTACAAACT 58.440 33.333 0.00 0.00 43.46 2.66
254 255 9.772973 TCTTTTTAGAGATTGCACTACAAACTA 57.227 29.630 0.00 0.00 41.09 2.24
255 256 9.813080 CTTTTTAGAGATTGCACTACAAACTAC 57.187 33.333 0.00 0.00 41.09 2.73
256 257 8.896320 TTTTAGAGATTGCACTACAAACTACA 57.104 30.769 0.00 0.00 41.09 2.74
257 258 9.502091 TTTTAGAGATTGCACTACAAACTACAT 57.498 29.630 0.00 0.00 41.09 2.29
259 260 9.582431 TTAGAGATTGCACTACAAACTACATAC 57.418 33.333 0.00 0.00 41.09 2.39
260 261 6.752351 AGAGATTGCACTACAAACTACATACG 59.248 38.462 0.00 0.00 41.09 3.06
261 262 5.810587 AGATTGCACTACAAACTACATACGG 59.189 40.000 0.00 0.00 42.86 4.02
262 263 4.787260 TGCACTACAAACTACATACGGA 57.213 40.909 0.00 0.00 0.00 4.69
263 264 5.333299 TGCACTACAAACTACATACGGAT 57.667 39.130 0.00 0.00 0.00 4.18
264 265 5.106442 TGCACTACAAACTACATACGGATG 58.894 41.667 5.94 5.94 39.16 3.51
265 266 6.794981 TTGCACTACAAACTACATACGGATGT 60.795 38.462 19.12 19.12 41.55 3.06
266 267 6.127675 TGCACTACAAACTACATACGGATGTA 60.128 38.462 19.32 19.32 44.77 2.29
267 268 6.921857 GCACTACAAACTACATACGGATGTAT 59.078 38.462 20.64 8.38 45.42 2.29
268 269 8.077991 GCACTACAAACTACATACGGATGTATA 58.922 37.037 20.64 9.08 45.42 1.47
304 305 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
305 306 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
306 307 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
307 308 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
308 309 6.593382 AGTGTAGATTCACTCATTTTGCTCTC 59.407 38.462 0.00 0.00 44.07 3.20
309 310 6.593382 GTGTAGATTCACTCATTTTGCTCTCT 59.407 38.462 0.00 0.00 35.68 3.10
310 311 6.592994 TGTAGATTCACTCATTTTGCTCTCTG 59.407 38.462 0.00 0.00 0.00 3.35
311 312 5.558818 AGATTCACTCATTTTGCTCTCTGT 58.441 37.500 0.00 0.00 0.00 3.41
312 313 5.411977 AGATTCACTCATTTTGCTCTCTGTG 59.588 40.000 0.00 0.00 0.00 3.66
313 314 4.077300 TCACTCATTTTGCTCTCTGTGT 57.923 40.909 0.00 0.00 0.00 3.72
314 315 5.213891 TCACTCATTTTGCTCTCTGTGTA 57.786 39.130 0.00 0.00 0.00 2.90
315 316 5.233225 TCACTCATTTTGCTCTCTGTGTAG 58.767 41.667 0.00 0.00 0.00 2.74
316 317 4.993584 CACTCATTTTGCTCTCTGTGTAGT 59.006 41.667 0.00 0.00 0.00 2.73
317 318 5.119898 CACTCATTTTGCTCTCTGTGTAGTC 59.880 44.000 0.00 0.00 0.00 2.59
318 319 4.569943 TCATTTTGCTCTCTGTGTAGTCC 58.430 43.478 0.00 0.00 0.00 3.85
319 320 4.040339 TCATTTTGCTCTCTGTGTAGTCCA 59.960 41.667 0.00 0.00 0.00 4.02
320 321 3.386768 TTTGCTCTCTGTGTAGTCCAC 57.613 47.619 0.00 0.00 44.78 4.02
339 340 6.373005 TCCACATTGGAATCTCTACAAAGA 57.627 37.500 0.00 0.00 45.00 2.52
340 341 6.173339 TCCACATTGGAATCTCTACAAAGAC 58.827 40.000 0.00 0.00 45.00 3.01
341 342 6.013379 TCCACATTGGAATCTCTACAAAGACT 60.013 38.462 0.00 0.00 45.00 3.24
342 343 6.656693 CCACATTGGAATCTCTACAAAGACTT 59.343 38.462 0.00 0.00 40.96 3.01
343 344 7.824289 CCACATTGGAATCTCTACAAAGACTTA 59.176 37.037 0.00 0.00 40.96 2.24
344 345 9.388506 CACATTGGAATCTCTACAAAGACTTAT 57.611 33.333 0.00 0.00 0.00 1.73
358 359 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
359 360 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
360 361 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
361 362 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
362 363 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
363 364 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
483 485 2.879070 GCGATGATGACAGGCAGCG 61.879 63.158 12.62 12.62 45.60 5.18
580 590 1.305465 TCCTTGGCGTGGGTAGCTA 60.305 57.895 0.00 0.00 34.52 3.32
661 671 3.114065 GTTCGTCTTCGACAAAGTCAGT 58.886 45.455 0.00 0.00 46.03 3.41
691 703 2.037772 CTCGAAGATTAGGGGGTGATGG 59.962 54.545 0.00 0.00 33.89 3.51
693 705 1.494721 GAAGATTAGGGGGTGATGGCA 59.505 52.381 0.00 0.00 0.00 4.92
710 722 0.690762 GCACCTGTTGGGGAGAAGTA 59.309 55.000 0.00 0.00 39.76 2.24
715 727 2.025887 CCTGTTGGGGAGAAGTAATGCT 60.026 50.000 0.00 0.00 0.00 3.79
766 803 1.227734 GGTGTTGTGTAGGTGCCGT 60.228 57.895 0.00 0.00 0.00 5.68
809 847 8.984764 GTTTTTGCCGGTTTTCTCTTAATTAAT 58.015 29.630 1.90 0.00 0.00 1.40
824 862 8.055279 TCTTAATTAATTGGGCAACTCTCTTG 57.945 34.615 11.05 0.00 0.00 3.02
828 866 0.106769 TTGGGCAACTCTCTTGTGCA 60.107 50.000 0.00 0.00 0.00 4.57
838 877 8.405531 GGCAACTCTCTTGTGCATAATTAATTA 58.594 33.333 10.27 10.27 0.00 1.40
857 896 9.895138 ATTAATTAATGAGGCAAATCTTTTGCT 57.105 25.926 20.56 9.75 44.36 3.91
859 898 8.707938 AATTAATGAGGCAAATCTTTTGCTAC 57.292 30.769 20.56 15.58 44.36 3.58
861 900 5.927281 ATGAGGCAAATCTTTTGCTACAT 57.073 34.783 20.56 20.24 44.36 2.29
863 902 6.832520 TGAGGCAAATCTTTTGCTACATAA 57.167 33.333 20.56 3.27 44.36 1.90
865 904 8.518430 TGAGGCAAATCTTTTGCTACATAATA 57.482 30.769 20.56 1.85 44.36 0.98
866 905 8.965819 TGAGGCAAATCTTTTGCTACATAATAA 58.034 29.630 20.56 1.33 44.36 1.40
867 906 9.801873 GAGGCAAATCTTTTGCTACATAATAAA 57.198 29.630 20.56 0.00 44.36 1.40
879 918 8.607441 TGCTACATAATAAATGTCTGATGACC 57.393 34.615 0.00 0.00 42.28 4.02
880 919 7.661437 TGCTACATAATAAATGTCTGATGACCC 59.339 37.037 0.00 0.00 42.28 4.46
881 920 7.661437 GCTACATAATAAATGTCTGATGACCCA 59.339 37.037 0.00 0.00 42.28 4.51
882 921 9.559732 CTACATAATAAATGTCTGATGACCCAA 57.440 33.333 0.00 0.00 42.28 4.12
883 922 8.821686 ACATAATAAATGTCTGATGACCCAAA 57.178 30.769 0.00 0.00 42.28 3.28
884 923 9.253832 ACATAATAAATGTCTGATGACCCAAAA 57.746 29.630 0.00 0.00 42.28 2.44
906 945 5.796424 AAAAATTGTCTGATGGAGTGCTT 57.204 34.783 0.00 0.00 0.00 3.91
907 946 4.778534 AAATTGTCTGATGGAGTGCTTG 57.221 40.909 0.00 0.00 0.00 4.01
908 947 1.527034 TTGTCTGATGGAGTGCTTGC 58.473 50.000 0.00 0.00 0.00 4.01
909 948 0.321919 TGTCTGATGGAGTGCTTGCC 60.322 55.000 0.00 0.00 0.00 4.52
910 949 0.321919 GTCTGATGGAGTGCTTGCCA 60.322 55.000 0.00 0.00 38.78 4.92
911 950 0.321919 TCTGATGGAGTGCTTGCCAC 60.322 55.000 0.00 0.00 45.01 5.01
978 1017 0.323629 TGGCGCCTAAGCTAACAACT 59.676 50.000 29.70 0.00 36.60 3.16
1101 1140 3.551496 CTCCCTGCTTGAACGGGCA 62.551 63.158 0.00 0.00 37.89 5.36
1189 1228 1.758514 ATCCCCATCGTGCTCTCGT 60.759 57.895 0.00 0.00 0.00 4.18
1395 1434 1.378778 CTTCGTCCTCCTCCTCGGT 60.379 63.158 0.00 0.00 0.00 4.69
1434 1473 2.044555 CGTCTACTGGCTCGTCCCA 61.045 63.158 0.00 0.00 0.00 4.37
1536 1591 3.733709 CCTTGACAAGGGCAAGTCT 57.266 52.632 24.42 0.00 45.27 3.24
1551 1606 3.706373 TCTGCCGTGGGGAAGCTC 61.706 66.667 0.00 0.00 39.10 4.09
1659 1717 1.283321 GTCCAAGGAGCCCAAGAAGAT 59.717 52.381 0.00 0.00 0.00 2.40
2418 2512 7.382218 AGCAAGCAAACTTTACACAAATGTATC 59.618 33.333 0.00 0.00 41.02 2.24
2441 2535 7.403312 TCCGATCAAATACACCAAATTGATT 57.597 32.000 0.00 0.00 41.29 2.57
2455 2549 8.274939 CACCAAATTGATTGTGTGTTCAAATAC 58.725 33.333 0.00 0.00 37.32 1.89
2479 2576 4.739195 ACAGTTCGTCTCTAATGCTCTTC 58.261 43.478 0.00 0.00 0.00 2.87
2576 2673 8.791327 TTCACTAATGTCTATTGCATCTTTGA 57.209 30.769 0.00 0.00 0.00 2.69
2604 2701 2.257207 ACCATTCCTTCTCCTGTCGAA 58.743 47.619 0.00 0.00 0.00 3.71
2774 2871 3.755378 AGCTTTGTGCCTGTTATCTGAAG 59.245 43.478 0.00 0.00 44.23 3.02
2839 2936 2.355946 AGCTCTTCGTTCAGCTCCA 58.644 52.632 0.00 0.00 42.60 3.86
2872 2969 2.672996 TCTTGGAAGCGGCAAGGC 60.673 61.111 1.45 0.00 0.00 4.35
2899 2996 3.971702 GCAACTGGAGGCAGGGGT 61.972 66.667 0.00 0.00 0.00 4.95
3031 3128 4.960938 ACTGAGTGCTATTTTGTGACTCA 58.039 39.130 0.00 0.00 40.50 3.41
3107 3204 3.196039 CAGCAAATCAACCCCATTCATCA 59.804 43.478 0.00 0.00 0.00 3.07
3181 3278 4.358851 GAGATGGAGAAGACAGATCAACG 58.641 47.826 0.00 0.00 0.00 4.10
3185 3282 5.506686 TGGAGAAGACAGATCAACGATAG 57.493 43.478 0.00 0.00 46.19 2.08
3201 3298 1.004044 GATAGCCATGCTAGGTGCCAT 59.996 52.381 1.98 0.00 44.66 4.40
3221 3318 0.179108 GCGGTGTACATCTCCTGTCC 60.179 60.000 4.28 0.00 39.39 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.480416 GGCTGAGAGTACCTCGACAATG 60.480 54.545 6.81 0.00 44.92 2.82
1 2 1.751924 GGCTGAGAGTACCTCGACAAT 59.248 52.381 6.81 0.00 44.92 2.71
2 3 1.174783 GGCTGAGAGTACCTCGACAA 58.825 55.000 6.81 0.00 44.92 3.18
3 4 0.680280 GGGCTGAGAGTACCTCGACA 60.680 60.000 6.81 0.00 44.92 4.35
4 5 1.385756 GGGGCTGAGAGTACCTCGAC 61.386 65.000 6.81 4.58 44.92 4.20
5 6 1.076923 GGGGCTGAGAGTACCTCGA 60.077 63.158 6.81 0.00 44.92 4.04
6 7 0.970937 TTGGGGCTGAGAGTACCTCG 60.971 60.000 6.81 4.04 44.92 4.63
7 8 1.501582 ATTGGGGCTGAGAGTACCTC 58.498 55.000 4.84 4.84 42.30 3.85
8 9 2.292918 TGTATTGGGGCTGAGAGTACCT 60.293 50.000 0.00 0.00 0.00 3.08
9 10 2.116238 TGTATTGGGGCTGAGAGTACC 58.884 52.381 0.00 0.00 0.00 3.34
10 11 3.733337 CATGTATTGGGGCTGAGAGTAC 58.267 50.000 0.00 0.00 0.00 2.73
11 12 2.104792 GCATGTATTGGGGCTGAGAGTA 59.895 50.000 0.00 0.00 0.00 2.59
12 13 1.133976 GCATGTATTGGGGCTGAGAGT 60.134 52.381 0.00 0.00 0.00 3.24
13 14 1.134007 TGCATGTATTGGGGCTGAGAG 60.134 52.381 0.00 0.00 0.00 3.20
14 15 0.918258 TGCATGTATTGGGGCTGAGA 59.082 50.000 0.00 0.00 0.00 3.27
15 16 1.315690 CTGCATGTATTGGGGCTGAG 58.684 55.000 0.00 0.00 0.00 3.35
16 17 0.752743 GCTGCATGTATTGGGGCTGA 60.753 55.000 0.00 0.00 0.00 4.26
17 18 0.754217 AGCTGCATGTATTGGGGCTG 60.754 55.000 1.02 0.00 0.00 4.85
18 19 0.032813 AAGCTGCATGTATTGGGGCT 60.033 50.000 1.02 0.00 0.00 5.19
19 20 0.386838 GAAGCTGCATGTATTGGGGC 59.613 55.000 1.02 0.00 0.00 5.80
20 21 0.664761 CGAAGCTGCATGTATTGGGG 59.335 55.000 1.02 0.00 0.00 4.96
21 22 0.664761 CCGAAGCTGCATGTATTGGG 59.335 55.000 1.02 0.00 0.00 4.12
22 23 1.667236 TCCGAAGCTGCATGTATTGG 58.333 50.000 1.02 0.00 0.00 3.16
23 24 2.938451 TCTTCCGAAGCTGCATGTATTG 59.062 45.455 1.02 0.00 0.00 1.90
24 25 3.266510 TCTTCCGAAGCTGCATGTATT 57.733 42.857 1.02 0.00 0.00 1.89
25 26 2.988010 TCTTCCGAAGCTGCATGTAT 57.012 45.000 1.02 0.00 0.00 2.29
26 27 2.742053 GTTTCTTCCGAAGCTGCATGTA 59.258 45.455 1.02 0.00 0.00 2.29
27 28 1.537202 GTTTCTTCCGAAGCTGCATGT 59.463 47.619 1.02 0.00 0.00 3.21
28 29 1.808945 AGTTTCTTCCGAAGCTGCATG 59.191 47.619 1.02 0.00 38.96 4.06
29 30 2.079925 GAGTTTCTTCCGAAGCTGCAT 58.920 47.619 1.02 0.00 40.25 3.96
30 31 1.070758 AGAGTTTCTTCCGAAGCTGCA 59.929 47.619 1.02 0.00 40.25 4.41
31 32 1.802069 AGAGTTTCTTCCGAAGCTGC 58.198 50.000 3.00 0.00 40.25 5.25
32 33 4.442375 TCTAGAGTTTCTTCCGAAGCTG 57.558 45.455 3.00 0.00 40.25 4.24
33 34 4.098807 GGATCTAGAGTTTCTTCCGAAGCT 59.901 45.833 3.00 0.00 42.44 3.74
34 35 4.142138 TGGATCTAGAGTTTCTTCCGAAGC 60.142 45.833 3.00 0.00 0.00 3.86
35 36 5.584253 TGGATCTAGAGTTTCTTCCGAAG 57.416 43.478 1.30 1.30 0.00 3.79
36 37 5.422331 ACATGGATCTAGAGTTTCTTCCGAA 59.578 40.000 0.00 0.00 0.00 4.30
37 38 4.956700 ACATGGATCTAGAGTTTCTTCCGA 59.043 41.667 0.00 0.00 0.00 4.55
38 39 5.046529 CACATGGATCTAGAGTTTCTTCCG 58.953 45.833 0.00 0.00 0.00 4.30
39 40 6.227298 TCACATGGATCTAGAGTTTCTTCC 57.773 41.667 0.00 0.00 0.00 3.46
53 54 1.069049 TCATCGTGCGATCACATGGAT 59.931 47.619 3.91 0.00 43.28 3.41
54 55 0.459489 TCATCGTGCGATCACATGGA 59.541 50.000 3.91 0.00 43.28 3.41
55 56 0.578683 GTCATCGTGCGATCACATGG 59.421 55.000 3.91 0.00 43.28 3.66
56 57 0.227986 CGTCATCGTGCGATCACATG 59.772 55.000 9.07 0.00 43.28 3.21
57 58 0.871592 CCGTCATCGTGCGATCACAT 60.872 55.000 9.07 0.00 43.28 3.21
58 59 1.516169 CCGTCATCGTGCGATCACA 60.516 57.895 9.07 0.00 43.28 3.58
59 60 1.516386 ACCGTCATCGTGCGATCAC 60.516 57.895 3.91 1.11 39.78 3.06
60 61 1.516169 CACCGTCATCGTGCGATCA 60.516 57.895 3.91 0.00 31.62 2.92
61 62 2.860628 GCACCGTCATCGTGCGATC 61.861 63.158 3.91 0.00 35.70 3.69
62 63 2.835701 AAGCACCGTCATCGTGCGAT 62.836 55.000 7.24 0.77 43.26 4.58
63 64 3.567478 AAGCACCGTCATCGTGCGA 62.567 57.895 7.24 0.00 43.26 5.10
64 65 2.667318 AAAGCACCGTCATCGTGCG 61.667 57.895 7.24 0.00 43.26 5.34
65 66 1.154413 CAAAGCACCGTCATCGTGC 60.154 57.895 4.80 4.80 41.00 5.34
66 67 1.497278 CCAAAGCACCGTCATCGTG 59.503 57.895 0.00 0.00 35.01 4.35
67 68 2.325082 GCCAAAGCACCGTCATCGT 61.325 57.895 0.00 0.00 39.53 3.73
68 69 2.324330 TGCCAAAGCACCGTCATCG 61.324 57.895 0.00 0.00 46.52 3.84
69 70 3.667087 TGCCAAAGCACCGTCATC 58.333 55.556 0.00 0.00 46.52 2.92
78 79 0.179018 AGGGGATACGATGCCAAAGC 60.179 55.000 7.48 0.00 43.48 3.51
79 80 1.417890 AGAGGGGATACGATGCCAAAG 59.582 52.381 7.48 0.00 43.48 2.77
80 81 1.416401 GAGAGGGGATACGATGCCAAA 59.584 52.381 7.48 0.00 43.48 3.28
81 82 1.048601 GAGAGGGGATACGATGCCAA 58.951 55.000 7.48 0.00 43.48 4.52
82 83 1.179174 CGAGAGGGGATACGATGCCA 61.179 60.000 7.48 0.00 43.48 4.92
83 84 0.894184 TCGAGAGGGGATACGATGCC 60.894 60.000 0.00 0.00 40.52 4.40
84 85 0.959553 TTCGAGAGGGGATACGATGC 59.040 55.000 0.00 0.00 34.85 3.91
85 86 2.226912 GTCTTCGAGAGGGGATACGATG 59.773 54.545 0.00 0.00 34.85 3.84
86 87 2.106857 AGTCTTCGAGAGGGGATACGAT 59.893 50.000 0.00 0.00 34.85 3.73
87 88 1.489649 AGTCTTCGAGAGGGGATACGA 59.510 52.381 0.00 0.00 37.60 3.43
88 89 1.970092 AGTCTTCGAGAGGGGATACG 58.030 55.000 0.00 0.00 37.60 3.06
89 90 3.447944 ACAAAGTCTTCGAGAGGGGATAC 59.552 47.826 0.00 0.00 0.00 2.24
90 91 3.700038 GACAAAGTCTTCGAGAGGGGATA 59.300 47.826 0.00 0.00 0.00 2.59
91 92 2.498078 GACAAAGTCTTCGAGAGGGGAT 59.502 50.000 0.00 0.00 0.00 3.85
92 93 1.893801 GACAAAGTCTTCGAGAGGGGA 59.106 52.381 0.00 0.00 0.00 4.81
93 94 1.896465 AGACAAAGTCTTCGAGAGGGG 59.104 52.381 0.00 0.00 40.28 4.79
103 104 3.904339 TCCTAGCTCCAAAGACAAAGTCT 59.096 43.478 0.00 0.00 45.64 3.24
104 105 4.273148 TCCTAGCTCCAAAGACAAAGTC 57.727 45.455 0.00 0.00 0.00 3.01
105 106 4.706842 TTCCTAGCTCCAAAGACAAAGT 57.293 40.909 0.00 0.00 0.00 2.66
106 107 5.105997 CCAATTCCTAGCTCCAAAGACAAAG 60.106 44.000 0.00 0.00 0.00 2.77
107 108 4.766891 CCAATTCCTAGCTCCAAAGACAAA 59.233 41.667 0.00 0.00 0.00 2.83
108 109 4.335416 CCAATTCCTAGCTCCAAAGACAA 58.665 43.478 0.00 0.00 0.00 3.18
109 110 3.873801 GCCAATTCCTAGCTCCAAAGACA 60.874 47.826 0.00 0.00 0.00 3.41
110 111 2.685388 GCCAATTCCTAGCTCCAAAGAC 59.315 50.000 0.00 0.00 0.00 3.01
111 112 2.308570 TGCCAATTCCTAGCTCCAAAGA 59.691 45.455 0.00 0.00 0.00 2.52
112 113 2.726821 TGCCAATTCCTAGCTCCAAAG 58.273 47.619 0.00 0.00 0.00 2.77
113 114 2.897271 TGCCAATTCCTAGCTCCAAA 57.103 45.000 0.00 0.00 0.00 3.28
114 115 2.897271 TTGCCAATTCCTAGCTCCAA 57.103 45.000 0.00 0.00 0.00 3.53
115 116 2.658285 CATTGCCAATTCCTAGCTCCA 58.342 47.619 0.00 0.00 0.00 3.86
116 117 1.959282 CCATTGCCAATTCCTAGCTCC 59.041 52.381 0.00 0.00 0.00 4.70
117 118 1.959282 CCCATTGCCAATTCCTAGCTC 59.041 52.381 0.00 0.00 0.00 4.09
118 119 1.570501 TCCCATTGCCAATTCCTAGCT 59.429 47.619 0.00 0.00 0.00 3.32
119 120 1.683385 GTCCCATTGCCAATTCCTAGC 59.317 52.381 0.00 0.00 0.00 3.42
120 121 3.303351 AGTCCCATTGCCAATTCCTAG 57.697 47.619 0.00 0.00 0.00 3.02
121 122 3.785887 ACTAGTCCCATTGCCAATTCCTA 59.214 43.478 0.00 0.00 0.00 2.94
122 123 2.582636 ACTAGTCCCATTGCCAATTCCT 59.417 45.455 0.00 0.00 0.00 3.36
123 124 2.689983 CACTAGTCCCATTGCCAATTCC 59.310 50.000 0.00 0.00 0.00 3.01
124 125 2.689983 CCACTAGTCCCATTGCCAATTC 59.310 50.000 0.00 0.00 0.00 2.17
125 126 2.311542 TCCACTAGTCCCATTGCCAATT 59.688 45.455 0.00 0.00 0.00 2.32
126 127 1.922447 TCCACTAGTCCCATTGCCAAT 59.078 47.619 0.00 0.00 0.00 3.16
127 128 1.367346 TCCACTAGTCCCATTGCCAA 58.633 50.000 0.00 0.00 0.00 4.52
128 129 1.281867 CTTCCACTAGTCCCATTGCCA 59.718 52.381 0.00 0.00 0.00 4.92
129 130 1.559682 TCTTCCACTAGTCCCATTGCC 59.440 52.381 0.00 0.00 0.00 4.52
130 131 3.209410 CATCTTCCACTAGTCCCATTGC 58.791 50.000 0.00 0.00 0.00 3.56
131 132 3.200825 ACCATCTTCCACTAGTCCCATTG 59.799 47.826 0.00 0.00 0.00 2.82
132 133 3.200825 CACCATCTTCCACTAGTCCCATT 59.799 47.826 0.00 0.00 0.00 3.16
133 134 2.774234 CACCATCTTCCACTAGTCCCAT 59.226 50.000 0.00 0.00 0.00 4.00
134 135 2.187958 CACCATCTTCCACTAGTCCCA 58.812 52.381 0.00 0.00 0.00 4.37
135 136 1.486726 CCACCATCTTCCACTAGTCCC 59.513 57.143 0.00 0.00 0.00 4.46
136 137 2.093447 CACCACCATCTTCCACTAGTCC 60.093 54.545 0.00 0.00 0.00 3.85
137 138 2.567615 ACACCACCATCTTCCACTAGTC 59.432 50.000 0.00 0.00 0.00 2.59
138 139 2.621070 ACACCACCATCTTCCACTAGT 58.379 47.619 0.00 0.00 0.00 2.57
139 140 3.338249 CAACACCACCATCTTCCACTAG 58.662 50.000 0.00 0.00 0.00 2.57
140 141 2.039746 CCAACACCACCATCTTCCACTA 59.960 50.000 0.00 0.00 0.00 2.74
141 142 1.202927 CCAACACCACCATCTTCCACT 60.203 52.381 0.00 0.00 0.00 4.00
142 143 1.247567 CCAACACCACCATCTTCCAC 58.752 55.000 0.00 0.00 0.00 4.02
143 144 0.539438 GCCAACACCACCATCTTCCA 60.539 55.000 0.00 0.00 0.00 3.53
144 145 1.586154 CGCCAACACCACCATCTTCC 61.586 60.000 0.00 0.00 0.00 3.46
145 146 0.889186 ACGCCAACACCACCATCTTC 60.889 55.000 0.00 0.00 0.00 2.87
146 147 0.889186 GACGCCAACACCACCATCTT 60.889 55.000 0.00 0.00 0.00 2.40
147 148 1.302511 GACGCCAACACCACCATCT 60.303 57.895 0.00 0.00 0.00 2.90
148 149 2.677003 CGACGCCAACACCACCATC 61.677 63.158 0.00 0.00 0.00 3.51
149 150 2.668212 CGACGCCAACACCACCAT 60.668 61.111 0.00 0.00 0.00 3.55
150 151 4.920112 CCGACGCCAACACCACCA 62.920 66.667 0.00 0.00 0.00 4.17
152 153 4.922026 ACCCGACGCCAACACCAC 62.922 66.667 0.00 0.00 0.00 4.16
153 154 4.612412 GACCCGACGCCAACACCA 62.612 66.667 0.00 0.00 0.00 4.17
154 155 3.819877 AAGACCCGACGCCAACACC 62.820 63.158 0.00 0.00 0.00 4.16
155 156 2.280592 AAGACCCGACGCCAACAC 60.281 61.111 0.00 0.00 0.00 3.32
156 157 2.029964 GAAGACCCGACGCCAACA 59.970 61.111 0.00 0.00 0.00 3.33
157 158 2.027625 CAGAAGACCCGACGCCAAC 61.028 63.158 0.00 0.00 0.00 3.77
158 159 2.035237 AACAGAAGACCCGACGCCAA 62.035 55.000 0.00 0.00 0.00 4.52
159 160 2.504274 AACAGAAGACCCGACGCCA 61.504 57.895 0.00 0.00 0.00 5.69
160 161 2.027625 CAACAGAAGACCCGACGCC 61.028 63.158 0.00 0.00 0.00 5.68
161 162 0.038892 TACAACAGAAGACCCGACGC 60.039 55.000 0.00 0.00 0.00 5.19
162 163 2.056577 GTTACAACAGAAGACCCGACG 58.943 52.381 0.00 0.00 0.00 5.12
163 164 2.224113 TGGTTACAACAGAAGACCCGAC 60.224 50.000 0.00 0.00 0.00 4.79
164 165 2.040939 TGGTTACAACAGAAGACCCGA 58.959 47.619 0.00 0.00 0.00 5.14
165 166 2.536761 TGGTTACAACAGAAGACCCG 57.463 50.000 0.00 0.00 0.00 5.28
166 167 4.015872 TCATGGTTACAACAGAAGACCC 57.984 45.455 0.00 0.00 0.00 4.46
167 168 4.396166 CCATCATGGTTACAACAGAAGACC 59.604 45.833 0.00 0.00 31.35 3.85
168 169 4.396166 CCCATCATGGTTACAACAGAAGAC 59.604 45.833 2.07 0.00 35.17 3.01
169 170 4.288366 TCCCATCATGGTTACAACAGAAGA 59.712 41.667 2.07 0.00 35.17 2.87
170 171 4.588899 TCCCATCATGGTTACAACAGAAG 58.411 43.478 2.07 0.00 35.17 2.85
171 172 4.042809 ACTCCCATCATGGTTACAACAGAA 59.957 41.667 2.07 0.00 35.17 3.02
172 173 3.587061 ACTCCCATCATGGTTACAACAGA 59.413 43.478 2.07 0.00 35.17 3.41
173 174 3.691118 CACTCCCATCATGGTTACAACAG 59.309 47.826 2.07 0.00 35.17 3.16
174 175 3.073798 ACACTCCCATCATGGTTACAACA 59.926 43.478 2.07 0.00 35.17 3.33
175 176 3.440173 CACACTCCCATCATGGTTACAAC 59.560 47.826 2.07 0.00 35.17 3.32
176 177 3.073798 ACACACTCCCATCATGGTTACAA 59.926 43.478 2.07 0.00 35.17 2.41
177 178 2.642311 ACACACTCCCATCATGGTTACA 59.358 45.455 2.07 0.00 35.17 2.41
178 179 3.009723 CACACACTCCCATCATGGTTAC 58.990 50.000 2.07 0.00 35.17 2.50
179 180 2.909662 TCACACACTCCCATCATGGTTA 59.090 45.455 2.07 0.00 35.17 2.85
180 181 1.704628 TCACACACTCCCATCATGGTT 59.295 47.619 2.07 0.00 35.17 3.67
181 182 1.361204 TCACACACTCCCATCATGGT 58.639 50.000 2.07 0.00 35.17 3.55
182 183 2.294979 CATCACACACTCCCATCATGG 58.705 52.381 0.00 0.00 37.25 3.66
183 184 2.995283 ACATCACACACTCCCATCATG 58.005 47.619 0.00 0.00 0.00 3.07
184 185 3.776969 AGTACATCACACACTCCCATCAT 59.223 43.478 0.00 0.00 0.00 2.45
185 186 3.173151 AGTACATCACACACTCCCATCA 58.827 45.455 0.00 0.00 0.00 3.07
186 187 3.786635 GAGTACATCACACACTCCCATC 58.213 50.000 0.00 0.00 33.99 3.51
187 188 3.895232 GAGTACATCACACACTCCCAT 57.105 47.619 0.00 0.00 33.99 4.00
191 192 3.673594 CGAAGGGAGTACATCACACACTC 60.674 52.174 0.00 0.00 38.36 3.51
192 193 2.231478 CGAAGGGAGTACATCACACACT 59.769 50.000 0.00 0.00 32.15 3.55
193 194 2.029290 ACGAAGGGAGTACATCACACAC 60.029 50.000 0.00 0.00 31.63 3.82
194 195 2.244695 ACGAAGGGAGTACATCACACA 58.755 47.619 0.00 0.00 31.63 3.72
195 196 3.251571 GAACGAAGGGAGTACATCACAC 58.748 50.000 0.00 0.00 31.63 3.82
196 197 2.232941 GGAACGAAGGGAGTACATCACA 59.767 50.000 0.00 0.00 31.63 3.58
197 198 2.496470 AGGAACGAAGGGAGTACATCAC 59.504 50.000 0.00 0.00 0.00 3.06
198 199 2.816411 AGGAACGAAGGGAGTACATCA 58.184 47.619 0.00 0.00 0.00 3.07
199 200 4.996788 TTAGGAACGAAGGGAGTACATC 57.003 45.455 0.00 0.00 0.00 3.06
200 201 5.952347 ATTTAGGAACGAAGGGAGTACAT 57.048 39.130 0.00 0.00 0.00 2.29
201 202 8.537728 TTATATTTAGGAACGAAGGGAGTACA 57.462 34.615 0.00 0.00 0.00 2.90
202 203 8.637099 ACTTATATTTAGGAACGAAGGGAGTAC 58.363 37.037 0.00 0.00 0.00 2.73
203 204 8.773033 ACTTATATTTAGGAACGAAGGGAGTA 57.227 34.615 0.00 0.00 0.00 2.59
204 205 7.564292 AGACTTATATTTAGGAACGAAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
205 206 7.953752 AGACTTATATTTAGGAACGAAGGGAG 58.046 38.462 0.00 0.00 0.00 4.30
206 207 7.909485 AGACTTATATTTAGGAACGAAGGGA 57.091 36.000 0.00 0.00 0.00 4.20
207 208 8.959705 AAAGACTTATATTTAGGAACGAAGGG 57.040 34.615 0.00 0.00 0.00 3.95
223 224 9.944376 TGTAGTGCAATCTCTAAAAAGACTTAT 57.056 29.630 0.00 0.00 0.00 1.73
224 225 9.772973 TTGTAGTGCAATCTCTAAAAAGACTTA 57.227 29.630 0.00 0.00 31.07 2.24
225 226 8.677148 TTGTAGTGCAATCTCTAAAAAGACTT 57.323 30.769 0.00 0.00 31.07 3.01
226 227 8.560374 GTTTGTAGTGCAATCTCTAAAAAGACT 58.440 33.333 0.00 0.00 36.89 3.24
227 228 8.560374 AGTTTGTAGTGCAATCTCTAAAAAGAC 58.440 33.333 0.00 0.00 36.89 3.01
228 229 8.677148 AGTTTGTAGTGCAATCTCTAAAAAGA 57.323 30.769 0.00 0.00 36.89 2.52
229 230 9.813080 GTAGTTTGTAGTGCAATCTCTAAAAAG 57.187 33.333 7.69 0.00 37.97 2.27
230 231 9.332502 TGTAGTTTGTAGTGCAATCTCTAAAAA 57.667 29.630 7.69 0.00 37.97 1.94
231 232 8.896320 TGTAGTTTGTAGTGCAATCTCTAAAA 57.104 30.769 7.69 0.00 37.97 1.52
233 234 9.582431 GTATGTAGTTTGTAGTGCAATCTCTAA 57.418 33.333 7.69 0.00 37.97 2.10
234 235 7.913821 CGTATGTAGTTTGTAGTGCAATCTCTA 59.086 37.037 7.69 3.30 37.97 2.43
235 236 6.752351 CGTATGTAGTTTGTAGTGCAATCTCT 59.248 38.462 7.69 4.11 37.97 3.10
236 237 6.019801 CCGTATGTAGTTTGTAGTGCAATCTC 60.020 42.308 7.69 2.52 37.97 2.75
237 238 5.810587 CCGTATGTAGTTTGTAGTGCAATCT 59.189 40.000 9.16 9.16 39.60 2.40
238 239 5.808540 TCCGTATGTAGTTTGTAGTGCAATC 59.191 40.000 0.00 0.00 36.89 2.67
239 240 5.726397 TCCGTATGTAGTTTGTAGTGCAAT 58.274 37.500 0.00 0.00 36.89 3.56
240 241 5.136816 TCCGTATGTAGTTTGTAGTGCAA 57.863 39.130 0.00 0.00 34.87 4.08
241 242 4.787260 TCCGTATGTAGTTTGTAGTGCA 57.213 40.909 0.00 0.00 0.00 4.57
242 243 5.107133 ACATCCGTATGTAGTTTGTAGTGC 58.893 41.667 0.00 0.00 44.66 4.40
284 285 6.593382 AGAGAGCAAAATGAGTGAATCTACAC 59.407 38.462 0.00 0.00 40.60 2.90
285 286 6.592994 CAGAGAGCAAAATGAGTGAATCTACA 59.407 38.462 0.00 0.00 0.00 2.74
286 287 6.593382 ACAGAGAGCAAAATGAGTGAATCTAC 59.407 38.462 0.00 0.00 0.00 2.59
287 288 6.592994 CACAGAGAGCAAAATGAGTGAATCTA 59.407 38.462 0.00 0.00 0.00 1.98
288 289 5.411977 CACAGAGAGCAAAATGAGTGAATCT 59.588 40.000 0.00 0.00 0.00 2.40
289 290 5.180868 ACACAGAGAGCAAAATGAGTGAATC 59.819 40.000 0.00 0.00 0.00 2.52
290 291 5.068636 ACACAGAGAGCAAAATGAGTGAAT 58.931 37.500 0.00 0.00 0.00 2.57
291 292 4.454678 ACACAGAGAGCAAAATGAGTGAA 58.545 39.130 0.00 0.00 0.00 3.18
292 293 4.077300 ACACAGAGAGCAAAATGAGTGA 57.923 40.909 0.00 0.00 0.00 3.41
293 294 4.993584 ACTACACAGAGAGCAAAATGAGTG 59.006 41.667 0.00 0.00 0.00 3.51
294 295 5.220710 ACTACACAGAGAGCAAAATGAGT 57.779 39.130 0.00 0.00 0.00 3.41
295 296 4.629200 GGACTACACAGAGAGCAAAATGAG 59.371 45.833 0.00 0.00 0.00 2.90
296 297 4.040339 TGGACTACACAGAGAGCAAAATGA 59.960 41.667 0.00 0.00 0.00 2.57
297 298 4.318332 TGGACTACACAGAGAGCAAAATG 58.682 43.478 0.00 0.00 0.00 2.32
298 299 4.623932 TGGACTACACAGAGAGCAAAAT 57.376 40.909 0.00 0.00 0.00 1.82
316 317 6.013379 AGTCTTTGTAGAGATTCCAATGTGGA 60.013 38.462 0.00 0.00 46.61 4.02
317 318 6.176183 AGTCTTTGTAGAGATTCCAATGTGG 58.824 40.000 0.00 0.00 39.43 4.17
318 319 7.678947 AAGTCTTTGTAGAGATTCCAATGTG 57.321 36.000 0.00 0.00 0.00 3.21
333 334 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
334 335 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
335 336 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
336 337 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
337 338 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
338 339 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
339 340 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
340 341 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
341 342 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
342 343 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
343 344 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
344 345 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
345 346 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
346 347 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
347 348 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
348 349 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
349 350 1.831736 CATTGTACTCCCTCCGTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
350 351 1.134491 CCATTGTACTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
351 352 1.553704 ACCATTGTACTCCCTCCGTTC 59.446 52.381 0.00 0.00 0.00 3.95
352 353 1.652947 ACCATTGTACTCCCTCCGTT 58.347 50.000 0.00 0.00 0.00 4.44
353 354 1.278127 CAACCATTGTACTCCCTCCGT 59.722 52.381 0.00 0.00 0.00 4.69
354 355 2.012051 GCAACCATTGTACTCCCTCCG 61.012 57.143 0.00 0.00 0.00 4.63
355 356 1.751437 GCAACCATTGTACTCCCTCC 58.249 55.000 0.00 0.00 0.00 4.30
356 357 1.369625 CGCAACCATTGTACTCCCTC 58.630 55.000 0.00 0.00 0.00 4.30
357 358 0.035439 CCGCAACCATTGTACTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
358 359 0.322187 ACCGCAACCATTGTACTCCC 60.322 55.000 0.00 0.00 0.00 4.30
359 360 2.277084 CTACCGCAACCATTGTACTCC 58.723 52.381 0.00 0.00 0.00 3.85
360 361 2.928116 GACTACCGCAACCATTGTACTC 59.072 50.000 0.00 0.00 0.00 2.59
361 362 2.673043 CGACTACCGCAACCATTGTACT 60.673 50.000 0.00 0.00 0.00 2.73
362 363 1.657094 CGACTACCGCAACCATTGTAC 59.343 52.381 0.00 0.00 0.00 2.90
363 364 1.404449 CCGACTACCGCAACCATTGTA 60.404 52.381 0.00 0.00 36.84 2.41
398 399 0.106149 GCCGAGGTAATCCCACGAAT 59.894 55.000 0.00 0.00 36.62 3.34
458 459 1.620323 CCTGTCATCATCGCCATAGGA 59.380 52.381 0.00 0.00 0.00 2.94
483 485 1.962822 GAAACCGAACGGACCACCC 60.963 63.158 20.14 0.00 38.96 4.61
661 671 2.530177 CTAATCTTCGAGCAAGCGACA 58.470 47.619 0.00 0.00 40.42 4.35
691 703 0.690762 TACTTCTCCCCAACAGGTGC 59.309 55.000 0.00 0.00 0.00 5.01
693 705 2.290960 GCATTACTTCTCCCCAACAGGT 60.291 50.000 0.00 0.00 0.00 4.00
710 722 2.426024 GCCAAGATCACACATCAGCATT 59.574 45.455 0.00 0.00 0.00 3.56
715 727 1.405933 CCTCGCCAAGATCACACATCA 60.406 52.381 0.00 0.00 0.00 3.07
766 803 0.745128 AACCGTCACAAACCGCTGAA 60.745 50.000 0.00 0.00 0.00 3.02
792 829 8.094548 AGTTGCCCAATTAATTAAGAGAAAACC 58.905 33.333 0.00 0.00 0.00 3.27
794 831 9.088987 AGAGTTGCCCAATTAATTAAGAGAAAA 57.911 29.630 0.00 0.00 0.00 2.29
798 835 7.872113 AGAGAGTTGCCCAATTAATTAAGAG 57.128 36.000 0.00 0.00 0.00 2.85
809 847 0.106769 TGCACAAGAGAGTTGCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
838 877 5.726980 TGTAGCAAAAGATTTGCCTCATT 57.273 34.783 20.66 7.69 45.98 2.57
857 896 9.913310 TTTGGGTCATCAGACATTTATTATGTA 57.087 29.630 0.00 0.00 46.80 2.29
858 897 8.821686 TTTGGGTCATCAGACATTTATTATGT 57.178 30.769 0.00 0.00 46.80 2.29
884 923 5.535333 CAAGCACTCCATCAGACAATTTTT 58.465 37.500 0.00 0.00 0.00 1.94
885 924 4.560108 GCAAGCACTCCATCAGACAATTTT 60.560 41.667 0.00 0.00 0.00 1.82
886 925 3.057033 GCAAGCACTCCATCAGACAATTT 60.057 43.478 0.00 0.00 0.00 1.82
887 926 2.490903 GCAAGCACTCCATCAGACAATT 59.509 45.455 0.00 0.00 0.00 2.32
888 927 2.089980 GCAAGCACTCCATCAGACAAT 58.910 47.619 0.00 0.00 0.00 2.71
889 928 1.527034 GCAAGCACTCCATCAGACAA 58.473 50.000 0.00 0.00 0.00 3.18
890 929 0.321919 GGCAAGCACTCCATCAGACA 60.322 55.000 0.00 0.00 0.00 3.41
891 930 0.321919 TGGCAAGCACTCCATCAGAC 60.322 55.000 0.00 0.00 0.00 3.51
892 931 0.321919 GTGGCAAGCACTCCATCAGA 60.322 55.000 0.00 0.00 34.47 3.27
893 932 0.322277 AGTGGCAAGCACTCCATCAG 60.322 55.000 0.00 0.00 34.47 2.90
894 933 0.983467 TAGTGGCAAGCACTCCATCA 59.017 50.000 0.00 0.00 34.47 3.07
895 934 1.661341 CTAGTGGCAAGCACTCCATC 58.339 55.000 0.00 0.00 34.47 3.51
896 935 0.393537 GCTAGTGGCAAGCACTCCAT 60.394 55.000 6.30 0.00 39.83 3.41
897 936 1.003355 GCTAGTGGCAAGCACTCCA 60.003 57.895 6.30 0.00 39.83 3.86
898 937 3.896479 GCTAGTGGCAAGCACTCC 58.104 61.111 6.30 0.00 39.83 3.85
907 946 0.597568 TTTGTGCACATGCTAGTGGC 59.402 50.000 22.39 0.00 42.66 5.01
908 947 1.881973 AGTTTGTGCACATGCTAGTGG 59.118 47.619 22.39 0.00 42.66 4.00
909 948 2.095567 GGAGTTTGTGCACATGCTAGTG 60.096 50.000 22.39 4.96 42.66 2.74
910 949 2.154462 GGAGTTTGTGCACATGCTAGT 58.846 47.619 22.39 9.40 42.66 2.57
911 950 1.470098 GGGAGTTTGTGCACATGCTAG 59.530 52.381 22.39 0.00 42.66 3.42
912 951 1.073763 AGGGAGTTTGTGCACATGCTA 59.926 47.619 22.39 1.80 42.66 3.49
913 952 0.178981 AGGGAGTTTGTGCACATGCT 60.179 50.000 22.39 20.61 42.66 3.79
914 953 0.242017 GAGGGAGTTTGTGCACATGC 59.758 55.000 22.39 16.11 42.50 4.06
915 954 0.883833 GGAGGGAGTTTGTGCACATG 59.116 55.000 22.39 0.00 0.00 3.21
970 1009 1.880027 GTGGGGTGCTGAAGTTGTTAG 59.120 52.381 0.00 0.00 0.00 2.34
978 1017 0.181587 TTTTCGAGTGGGGTGCTGAA 59.818 50.000 0.00 0.00 0.00 3.02
1395 1434 1.296392 CTTCATGAGGCGGGTGACA 59.704 57.895 0.00 0.00 0.00 3.58
1506 1561 0.601558 TGTCAAGGTCCTGCTCGTAC 59.398 55.000 0.00 0.00 0.00 3.67
1659 1717 5.047566 TGTTGTTTCCTTCTCCATCTTCA 57.952 39.130 0.00 0.00 0.00 3.02
2007 2101 3.177884 AACCAGCAGCCCACCAGA 61.178 61.111 0.00 0.00 0.00 3.86
2418 2512 7.009448 CACAATCAATTTGGTGTATTTGATCGG 59.991 37.037 6.39 0.00 37.72 4.18
2441 2535 6.044046 ACGAACTGTAGTATTTGAACACACA 58.956 36.000 0.00 0.00 0.00 3.72
2455 2549 5.493133 AGAGCATTAGAGACGAACTGTAG 57.507 43.478 0.00 0.00 0.00 2.74
2576 2673 3.852578 AGGAGAAGGAATGGTAACCATGT 59.147 43.478 0.00 0.00 44.40 3.21
2604 2701 1.697432 TGTCATCTCCTTCACCGGTTT 59.303 47.619 2.97 0.00 0.00 3.27
2839 2936 3.266772 TCCAAGACTTGCCACCTTATGAT 59.733 43.478 9.85 0.00 0.00 2.45
2899 2996 2.159379 CGACGTGATTGATCTGTCCTCA 60.159 50.000 0.00 0.00 32.81 3.86
3031 3128 3.452627 AGTCAAGTGTTGGTCAGAACTCT 59.547 43.478 0.00 0.00 32.39 3.24
3041 3138 0.466189 AGCACCCAGTCAAGTGTTGG 60.466 55.000 0.00 0.00 36.35 3.77
3044 3141 1.424638 AGTAGCACCCAGTCAAGTGT 58.575 50.000 0.00 0.00 36.35 3.55
3046 3143 2.172717 ACAAAGTAGCACCCAGTCAAGT 59.827 45.455 0.00 0.00 0.00 3.16
3107 3204 0.615331 ATCGGATCAACCACAGCTGT 59.385 50.000 15.25 15.25 38.90 4.40
3201 3298 0.530744 GACAGGAGATGTACACCGCA 59.469 55.000 0.00 0.00 44.17 5.69
3221 3318 0.245539 CCTGCAAGCAATTGTCCTGG 59.754 55.000 7.40 3.39 0.00 4.45
3331 3428 1.740025 CAAAAGAGGAAAGCTAGGCCG 59.260 52.381 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.