Multiple sequence alignment - TraesCS7A01G328000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G328000 chr7A 100.000 4008 0 0 1 4008 476941105 476937098 0.000000e+00 7402.0
1 TraesCS7A01G328000 chr7D 91.582 1675 89 22 365 2004 414493699 414492042 0.000000e+00 2265.0
2 TraesCS7A01G328000 chr7D 93.497 815 29 11 2873 3681 414491513 414490717 0.000000e+00 1190.0
3 TraesCS7A01G328000 chr7D 90.489 368 33 2 1 367 414494108 414493742 6.020000e-133 484.0
4 TraesCS7A01G328000 chr7D 83.386 319 37 11 2377 2683 414491843 414491529 8.480000e-72 281.0
5 TraesCS7A01G328000 chr7D 86.310 168 17 3 2101 2262 414492019 414491852 1.140000e-40 178.0
6 TraesCS7A01G328000 chr7D 91.339 127 11 0 2262 2388 182605350 182605476 1.480000e-39 174.0
7 TraesCS7A01G328000 chr7D 86.420 162 19 2 3768 3928 414490629 414490470 1.480000e-39 174.0
8 TraesCS7A01G328000 chr7B 91.342 1155 55 15 2377 3525 428927036 428925921 0.000000e+00 1537.0
9 TraesCS7A01G328000 chr7B 93.197 1029 54 10 1239 2263 428928051 428927035 0.000000e+00 1498.0
10 TraesCS7A01G328000 chr7B 92.066 542 18 9 709 1241 428928607 428928082 0.000000e+00 739.0
11 TraesCS7A01G328000 chr7B 89.946 368 35 2 1 367 78323947 78323581 1.300000e-129 473.0
12 TraesCS7A01G328000 chr7B 94.915 118 6 0 2262 2379 127650076 127649959 6.840000e-43 185.0
13 TraesCS7A01G328000 chr7B 94.872 117 6 0 2262 2378 194738939 194739055 2.460000e-42 183.0
14 TraesCS7A01G328000 chr7B 85.890 163 11 7 3768 3921 428922650 428922491 3.210000e-36 163.0
15 TraesCS7A01G328000 chr7B 83.908 87 10 4 3851 3934 86639497 86639582 3.320000e-11 80.5
16 TraesCS7A01G328000 chr2D 89.674 368 35 3 1 367 587269721 587269356 2.180000e-127 466.0
17 TraesCS7A01G328000 chr2D 88.800 375 39 3 1 373 388514370 388514743 1.310000e-124 457.0
18 TraesCS7A01G328000 chr2D 88.859 368 38 3 1 367 69500072 69500437 2.200000e-122 449.0
19 TraesCS7A01G328000 chr2D 92.169 166 10 2 2701 2865 63708564 63708401 8.660000e-57 231.0
20 TraesCS7A01G328000 chr2D 91.617 167 11 2 2695 2860 152021488 152021324 1.120000e-55 228.0
21 TraesCS7A01G328000 chr2D 91.617 167 11 2 2694 2859 336511296 336511132 1.120000e-55 228.0
22 TraesCS7A01G328000 chr2D 80.702 171 28 4 3768 3935 304397253 304397421 1.170000e-25 128.0
23 TraesCS7A01G328000 chr5D 89.431 369 35 4 1 367 363190561 363190195 2.820000e-126 462.0
24 TraesCS7A01G328000 chr5D 89.189 370 35 5 1 367 458001224 458000857 1.310000e-124 457.0
25 TraesCS7A01G328000 chr5D 79.720 143 26 3 478 618 203074000 203074141 2.550000e-17 100.0
26 TraesCS7A01G328000 chr2B 88.859 368 40 1 1 367 131899717 131900084 6.110000e-123 451.0
27 TraesCS7A01G328000 chr2B 92.727 165 9 2 2695 2858 585712655 585712493 6.700000e-58 235.0
28 TraesCS7A01G328000 chr6A 88.587 368 40 2 1 367 115035621 115035255 2.840000e-121 446.0
29 TraesCS7A01G328000 chr4D 92.262 168 10 2 2695 2861 75266909 75266744 6.700000e-58 235.0
30 TraesCS7A01G328000 chr4D 83.234 167 24 3 3772 3935 435600971 435601136 2.500000e-32 150.0
31 TraesCS7A01G328000 chr4D 81.657 169 26 4 3770 3935 335353205 335353039 6.990000e-28 135.0
32 TraesCS7A01G328000 chr4D 83.908 87 13 1 458 544 351650119 351650204 9.230000e-12 82.4
33 TraesCS7A01G328000 chrUn 91.279 172 11 3 2695 2864 109117365 109117196 8.660000e-57 231.0
34 TraesCS7A01G328000 chrUn 92.000 125 10 0 2254 2378 87827385 87827509 4.120000e-40 176.0
35 TraesCS7A01G328000 chrUn 92.000 125 10 0 2254 2378 309972430 309972554 4.120000e-40 176.0
36 TraesCS7A01G328000 chr6D 92.073 164 10 2 2695 2857 93646226 93646387 1.120000e-55 228.0
37 TraesCS7A01G328000 chr5B 91.124 169 11 3 2695 2862 577082743 577082578 4.030000e-55 226.0
38 TraesCS7A01G328000 chr3A 95.968 124 5 0 2257 2380 31817484 31817607 6.790000e-48 202.0
39 TraesCS7A01G328000 chr3A 79.661 295 49 10 365 653 620622066 620622355 6.790000e-48 202.0
40 TraesCS7A01G328000 chr3A 80.695 259 39 9 365 618 128289537 128289285 1.470000e-44 191.0
41 TraesCS7A01G328000 chr3A 80.309 259 40 9 365 618 128291042 128290790 6.840000e-43 185.0
42 TraesCS7A01G328000 chr6B 94.915 118 6 0 2261 2378 487215119 487215236 6.840000e-43 185.0
43 TraesCS7A01G328000 chr3D 92.800 125 8 1 2258 2382 208640710 208640587 3.180000e-41 180.0
44 TraesCS7A01G328000 chr5A 93.388 121 7 1 2258 2378 705831782 705831901 1.140000e-40 178.0
45 TraesCS7A01G328000 chr5A 82.162 185 28 5 365 545 77342113 77341930 1.930000e-33 154.0
46 TraesCS7A01G328000 chr5A 81.102 127 24 0 3770 3896 610234453 610234327 7.090000e-18 102.0
47 TraesCS7A01G328000 chr4B 80.814 172 27 6 3772 3938 541128106 541127936 3.250000e-26 130.0
48 TraesCS7A01G328000 chr4B 86.555 119 13 3 429 545 437109599 437109482 1.170000e-25 128.0
49 TraesCS7A01G328000 chr1B 80.255 157 26 2 370 526 411166850 411166699 3.270000e-21 113.0
50 TraesCS7A01G328000 chr3B 86.301 73 6 4 3869 3938 755804763 755804692 4.300000e-10 76.8
51 TraesCS7A01G328000 chr4A 79.545 88 14 4 3851 3935 737098394 737098480 4.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G328000 chr7A 476937098 476941105 4007 True 7402.00 7402 100.00000 1 4008 1 chr7A.!!$R1 4007
1 TraesCS7A01G328000 chr7D 414490470 414494108 3638 True 762.00 2265 88.61400 1 3928 6 chr7D.!!$R1 3927
2 TraesCS7A01G328000 chr7B 428922491 428928607 6116 True 984.25 1537 90.62375 709 3921 4 chr7B.!!$R3 3212

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 308 0.031314 CGAGGATGAGGGTGACGATG 59.969 60.0 0.00 0.0 0.0 3.84 F
623 674 0.033796 ACGGACCGGTTCTCTATCCA 60.034 55.0 20.00 0.0 0.0 3.41 F
719 779 0.035458 AAGCAAGTCGTGGGAGGAAG 59.965 55.0 0.00 0.0 0.0 3.46 F
1231 1314 0.109412 CACCTTCGGACGTCAGTACC 60.109 60.0 18.91 0.0 0.0 3.34 F
1232 1315 0.538057 ACCTTCGGACGTCAGTACCA 60.538 55.0 18.91 0.0 0.0 3.25 F
2277 2402 0.549950 AGATACTCCCTTCGTCCGGA 59.450 55.0 0.00 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1232 1315 0.790993 TGAGTGGAGGAGGGGTTAGT 59.209 55.0 0.00 0.0 0.00 2.24 R
2355 2480 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
2356 2481 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.0 5.23 0.0 44.66 1.89 R
2357 2482 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 R
2359 2484 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 R
3236 3380 0.179094 TTTCGACGAACCAGTGCAGT 60.179 50.0 10.38 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.694072 GCACAACATGGGCTACTATTTGA 59.306 43.478 0.00 0.00 45.01 2.69
57 58 6.039270 GCACAACATGGGCTACTATTTGATTA 59.961 38.462 0.00 0.00 45.01 1.75
59 60 8.632679 CACAACATGGGCTACTATTTGATTAAT 58.367 33.333 0.00 0.00 0.00 1.40
88 89 1.210478 TCCTCCATGAGCTACCTTTGC 59.790 52.381 0.00 0.00 0.00 3.68
113 114 3.507233 GCACCATCTCAAACTCAATTGGA 59.493 43.478 5.42 0.00 0.00 3.53
116 117 5.184479 CACCATCTCAAACTCAATTGGACAT 59.816 40.000 5.42 0.00 0.00 3.06
117 118 5.184479 ACCATCTCAAACTCAATTGGACATG 59.816 40.000 5.42 0.00 0.00 3.21
122 123 7.780064 TCTCAAACTCAATTGGACATGAAAAA 58.220 30.769 5.42 0.00 0.00 1.94
123 124 8.423349 TCTCAAACTCAATTGGACATGAAAAAT 58.577 29.630 5.42 0.00 0.00 1.82
136 137 2.741612 TGAAAAATGCTCACTTTGCCG 58.258 42.857 0.00 0.00 0.00 5.69
145 146 2.030805 GCTCACTTTGCCGAAAGACAAT 60.031 45.455 3.70 0.00 41.12 2.71
148 149 5.619981 GCTCACTTTGCCGAAAGACAATAAT 60.620 40.000 3.70 0.00 41.12 1.28
151 152 5.796935 CACTTTGCCGAAAGACAATAATCAG 59.203 40.000 3.70 0.00 41.12 2.90
164 165 6.709846 AGACAATAATCAGCTAGAAAGGATGC 59.290 38.462 0.00 0.00 0.00 3.91
166 167 2.540265 ATCAGCTAGAAAGGATGCCG 57.460 50.000 0.00 0.00 0.00 5.69
167 168 0.465705 TCAGCTAGAAAGGATGCCGG 59.534 55.000 0.00 0.00 0.00 6.13
168 169 0.465705 CAGCTAGAAAGGATGCCGGA 59.534 55.000 5.05 0.00 0.00 5.14
169 170 1.071385 CAGCTAGAAAGGATGCCGGAT 59.929 52.381 5.05 0.00 0.00 4.18
211 213 1.187715 CGTTTTGCAGTTGTTCGTGG 58.812 50.000 0.00 0.00 0.00 4.94
216 218 0.753867 TGCAGTTGTTCGTGGACCTA 59.246 50.000 0.00 0.00 0.00 3.08
233 235 4.165372 GGACCTACTAAACAATGGGATCCA 59.835 45.833 15.23 0.00 38.19 3.41
259 261 2.362736 CTTGTGGGAGGTGATGACATG 58.637 52.381 0.00 0.00 0.00 3.21
299 301 0.106669 TGATCGTCGAGGATGAGGGT 60.107 55.000 24.24 0.55 30.72 4.34
306 308 0.031314 CGAGGATGAGGGTGACGATG 59.969 60.000 0.00 0.00 0.00 3.84
311 313 2.887568 GAGGGTGACGATGCTGCG 60.888 66.667 0.00 0.00 37.29 5.18
333 335 2.412847 GCAACTCCGGAATTTGAGAACG 60.413 50.000 23.60 4.32 32.84 3.95
336 338 2.036733 ACTCCGGAATTTGAGAACGTGA 59.963 45.455 5.23 0.00 32.84 4.35
354 356 4.223032 ACGTGAGTGATCCTATCCAACTTT 59.777 41.667 0.00 0.00 46.97 2.66
357 359 4.709886 TGAGTGATCCTATCCAACTTTCGA 59.290 41.667 0.00 0.00 0.00 3.71
367 369 3.064207 TCCAACTTTCGAACCAGAATCG 58.936 45.455 0.00 0.00 41.53 3.34
368 370 3.064207 CCAACTTTCGAACCAGAATCGA 58.936 45.455 0.00 0.00 46.64 3.59
388 436 0.788995 CAACTCACGAGCAGCTGAAG 59.211 55.000 20.43 9.97 0.00 3.02
389 437 0.676184 AACTCACGAGCAGCTGAAGA 59.324 50.000 20.43 5.89 0.00 2.87
391 439 1.066914 CTCACGAGCAGCTGAAGAAC 58.933 55.000 20.43 0.00 0.00 3.01
424 475 1.021968 ATCAATCGGCGGTTAAAGGC 58.978 50.000 4.49 0.00 0.00 4.35
431 482 1.154543 GCGGTTAAAGGCGACAACG 60.155 57.895 0.00 0.00 42.93 4.10
440 491 1.669760 GGCGACAACGATGTTGGGA 60.670 57.895 14.23 0.00 40.74 4.37
443 494 1.438651 CGACAACGATGTTGGGATGT 58.561 50.000 13.62 0.00 40.74 3.06
450 501 5.105917 ACAACGATGTTGGGATGTATTTTCC 60.106 40.000 13.62 0.00 35.91 3.13
460 511 6.451393 TGGGATGTATTTTCCGAACTTTTTG 58.549 36.000 0.00 0.00 33.82 2.44
503 554 5.801350 TGCAGCTATTTGAATGTCTGTAC 57.199 39.130 0.00 0.00 0.00 2.90
505 556 4.878397 GCAGCTATTTGAATGTCTGTACCT 59.122 41.667 0.00 0.00 0.00 3.08
516 567 1.135689 GTCTGTACCTTTTGCATGCGG 60.136 52.381 14.09 10.56 0.00 5.69
526 577 2.780065 TTGCATGCGGCTATTTGATC 57.220 45.000 14.09 0.00 45.15 2.92
527 578 1.677942 TGCATGCGGCTATTTGATCA 58.322 45.000 14.09 0.00 45.15 2.92
529 580 3.410508 TGCATGCGGCTATTTGATCATA 58.589 40.909 14.09 0.00 45.15 2.15
532 583 3.378911 TGCGGCTATTTGATCATACGA 57.621 42.857 0.00 0.00 0.00 3.43
587 638 9.325198 TGTATACAAATAGTGTTGATGTCATCC 57.675 33.333 10.36 0.00 41.98 3.51
590 641 7.383102 ACAAATAGTGTTGATGTCATCCTTC 57.617 36.000 10.36 1.93 37.01 3.46
593 644 1.398390 GTGTTGATGTCATCCTTCCGC 59.602 52.381 10.36 0.00 0.00 5.54
596 647 2.245159 TGATGTCATCCTTCCGCATC 57.755 50.000 10.36 0.00 37.17 3.91
602 653 0.744414 CATCCTTCCGCATCCGTGTT 60.744 55.000 0.00 0.00 0.00 3.32
604 655 1.375396 CCTTCCGCATCCGTGTTCA 60.375 57.895 0.00 0.00 0.00 3.18
605 656 1.635663 CCTTCCGCATCCGTGTTCAC 61.636 60.000 0.00 0.00 0.00 3.18
606 657 1.955529 CTTCCGCATCCGTGTTCACG 61.956 60.000 16.87 16.87 0.00 4.35
615 666 2.305127 CGTGTTCACGGACCGGTTC 61.305 63.158 20.00 5.30 0.00 3.62
616 667 1.068585 GTGTTCACGGACCGGTTCT 59.931 57.895 20.00 0.00 0.00 3.01
617 668 0.942884 GTGTTCACGGACCGGTTCTC 60.943 60.000 20.00 0.36 0.00 2.87
618 669 1.111116 TGTTCACGGACCGGTTCTCT 61.111 55.000 20.00 0.00 0.00 3.10
619 670 0.883833 GTTCACGGACCGGTTCTCTA 59.116 55.000 20.00 0.00 0.00 2.43
622 673 0.384669 CACGGACCGGTTCTCTATCC 59.615 60.000 20.00 1.54 0.00 2.59
623 674 0.033796 ACGGACCGGTTCTCTATCCA 60.034 55.000 20.00 0.00 0.00 3.41
625 676 1.000163 CGGACCGGTTCTCTATCCATG 60.000 57.143 9.42 0.00 0.00 3.66
626 677 2.317040 GGACCGGTTCTCTATCCATGA 58.683 52.381 9.42 0.00 0.00 3.07
629 680 3.104512 ACCGGTTCTCTATCCATGAACA 58.895 45.455 0.00 0.00 41.07 3.18
630 681 3.517901 ACCGGTTCTCTATCCATGAACAA 59.482 43.478 0.00 0.00 41.07 2.83
632 683 5.126067 CCGGTTCTCTATCCATGAACAAAT 58.874 41.667 0.00 0.00 41.07 2.32
634 685 5.586243 CGGTTCTCTATCCATGAACAAATGT 59.414 40.000 0.00 0.00 41.07 2.71
647 701 7.877097 CCATGAACAAATGTGGGAGAAAATTTA 59.123 33.333 0.00 0.00 0.00 1.40
648 702 8.711457 CATGAACAAATGTGGGAGAAAATTTAC 58.289 33.333 0.00 0.00 0.00 2.01
661 715 1.949465 AATTTACGGGTCGAGATGCC 58.051 50.000 0.00 0.00 0.00 4.40
708 768 4.229876 GGCATGAAAGTACAAAGCAAGTC 58.770 43.478 0.00 0.00 0.00 3.01
712 772 3.311322 TGAAAGTACAAAGCAAGTCGTGG 59.689 43.478 0.00 0.00 0.00 4.94
716 776 0.535102 ACAAAGCAAGTCGTGGGAGG 60.535 55.000 0.00 0.00 0.00 4.30
719 779 0.035458 AAGCAAGTCGTGGGAGGAAG 59.965 55.000 0.00 0.00 0.00 3.46
723 783 0.905337 AAGTCGTGGGAGGAAGGGAG 60.905 60.000 0.00 0.00 0.00 4.30
725 785 2.038975 CGTGGGAGGAAGGGAGGA 59.961 66.667 0.00 0.00 0.00 3.71
754 814 4.890158 AAGAAAATTGGGCGGAGAAAAT 57.110 36.364 0.00 0.00 0.00 1.82
755 815 5.993748 AAGAAAATTGGGCGGAGAAAATA 57.006 34.783 0.00 0.00 0.00 1.40
756 816 5.324784 AGAAAATTGGGCGGAGAAAATAC 57.675 39.130 0.00 0.00 0.00 1.89
757 817 4.770010 AGAAAATTGGGCGGAGAAAATACA 59.230 37.500 0.00 0.00 0.00 2.29
758 818 4.450082 AAATTGGGCGGAGAAAATACAC 57.550 40.909 0.00 0.00 0.00 2.90
759 819 2.871096 TTGGGCGGAGAAAATACACT 57.129 45.000 0.00 0.00 0.00 3.55
889 955 1.000486 CTCCCTCCGTCTTCCTGGA 60.000 63.158 0.00 0.00 0.00 3.86
890 956 1.305046 TCCCTCCGTCTTCCTGGAC 60.305 63.158 0.00 0.00 0.00 4.02
891 957 2.359967 CCCTCCGTCTTCCTGGACC 61.360 68.421 0.00 0.00 33.07 4.46
892 958 2.359967 CCTCCGTCTTCCTGGACCC 61.360 68.421 0.00 0.00 33.07 4.46
893 959 1.609501 CTCCGTCTTCCTGGACCCA 60.610 63.158 0.00 0.00 33.07 4.51
968 1039 0.395173 AATTTCGATTCCCACCCCCG 60.395 55.000 0.00 0.00 0.00 5.73
1231 1314 0.109412 CACCTTCGGACGTCAGTACC 60.109 60.000 18.91 0.00 0.00 3.34
1232 1315 0.538057 ACCTTCGGACGTCAGTACCA 60.538 55.000 18.91 0.00 0.00 3.25
1241 1324 1.203100 ACGTCAGTACCACTAACCCCT 60.203 52.381 0.00 0.00 0.00 4.79
1242 1325 1.475682 CGTCAGTACCACTAACCCCTC 59.524 57.143 0.00 0.00 0.00 4.30
1244 1327 1.720533 TCAGTACCACTAACCCCTCCT 59.279 52.381 0.00 0.00 0.00 3.69
1341 1457 2.258286 GCCGCCACAAACATGACC 59.742 61.111 0.00 0.00 0.00 4.02
1348 1464 2.421424 GCCACAAACATGACCTGATCTC 59.579 50.000 0.00 0.00 0.00 2.75
1425 1542 4.566545 TGTGTACTGAAGCAACCAATTG 57.433 40.909 0.00 0.00 38.99 2.32
1435 1552 5.065090 TGAAGCAACCAATTGTAGATCATCG 59.935 40.000 4.43 0.00 38.17 3.84
1448 1565 1.162181 ATCATCGTCATGCCTTGCCG 61.162 55.000 0.00 0.00 0.00 5.69
1519 1636 1.671979 CCATGCCGTCTGTTCATGAT 58.328 50.000 0.00 0.00 39.80 2.45
1520 1637 1.332686 CCATGCCGTCTGTTCATGATG 59.667 52.381 0.00 0.00 39.80 3.07
1521 1638 2.282407 CATGCCGTCTGTTCATGATGA 58.718 47.619 0.00 0.00 39.80 2.92
1729 1846 2.675423 AGCGAGGCGAGTACCACA 60.675 61.111 0.00 0.00 0.00 4.17
1775 1892 9.726438 ATTTCTGTTGTATGTTCTTAGTTAGCT 57.274 29.630 0.00 0.00 0.00 3.32
1782 1899 4.600692 TGTTCTTAGTTAGCTGTGCTGA 57.399 40.909 0.00 0.00 40.10 4.26
1784 1901 4.039245 TGTTCTTAGTTAGCTGTGCTGAGT 59.961 41.667 0.00 0.00 40.10 3.41
1785 1902 5.243060 TGTTCTTAGTTAGCTGTGCTGAGTA 59.757 40.000 0.00 0.00 40.10 2.59
1804 1921 3.804325 AGTATACAGTGCTTATGCTTGCG 59.196 43.478 5.50 0.00 40.48 4.85
1809 1928 1.135972 AGTGCTTATGCTTGCGAAACG 60.136 47.619 1.96 0.00 40.48 3.60
1987 2106 2.494059 TGTCAAGCTTCTGTAAGTGCC 58.506 47.619 0.00 0.00 35.75 5.01
2008 2127 4.444022 GCCACACATCTCCATCTTCAGTAT 60.444 45.833 0.00 0.00 0.00 2.12
2049 2168 7.982919 TCTTGTTAACTTTTGAGTACACTAGCA 59.017 33.333 7.22 0.00 0.00 3.49
2122 2241 2.254546 TTACAGTGTGCAACTCCCTG 57.745 50.000 5.88 0.00 36.83 4.45
2190 2309 1.535462 CCAGCCAGTTGTAGTTTTCCG 59.465 52.381 0.00 0.00 0.00 4.30
2262 2387 8.742777 AGCAAGTTTTATGAGAAATGCAAGATA 58.257 29.630 0.00 0.00 35.11 1.98
2263 2388 8.801913 GCAAGTTTTATGAGAAATGCAAGATAC 58.198 33.333 0.00 0.00 33.00 2.24
2266 2391 8.897752 AGTTTTATGAGAAATGCAAGATACTCC 58.102 33.333 0.00 0.00 0.00 3.85
2267 2392 7.807977 TTTATGAGAAATGCAAGATACTCCC 57.192 36.000 0.00 0.00 0.00 4.30
2268 2393 5.643421 ATGAGAAATGCAAGATACTCCCT 57.357 39.130 0.00 0.00 0.00 4.20
2270 2395 5.431765 TGAGAAATGCAAGATACTCCCTTC 58.568 41.667 0.00 0.00 0.00 3.46
2271 2396 4.446371 AGAAATGCAAGATACTCCCTTCG 58.554 43.478 0.00 0.00 0.00 3.79
2272 2397 3.914426 AATGCAAGATACTCCCTTCGT 57.086 42.857 0.00 0.00 0.00 3.85
2273 2398 2.961526 TGCAAGATACTCCCTTCGTC 57.038 50.000 0.00 0.00 0.00 4.20
2274 2399 1.480954 TGCAAGATACTCCCTTCGTCC 59.519 52.381 0.00 0.00 0.00 4.79
2275 2400 1.536284 GCAAGATACTCCCTTCGTCCG 60.536 57.143 0.00 0.00 0.00 4.79
2276 2401 1.067212 CAAGATACTCCCTTCGTCCGG 59.933 57.143 0.00 0.00 0.00 5.14
2277 2402 0.549950 AGATACTCCCTTCGTCCGGA 59.450 55.000 0.00 0.00 0.00 5.14
2278 2403 1.064166 AGATACTCCCTTCGTCCGGAA 60.064 52.381 5.23 0.00 0.00 4.30
2279 2404 1.753073 GATACTCCCTTCGTCCGGAAA 59.247 52.381 5.23 0.00 33.34 3.13
2280 2405 1.856629 TACTCCCTTCGTCCGGAAAT 58.143 50.000 5.23 0.00 33.34 2.17
2281 2406 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
2282 2407 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
2283 2408 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
2284 2409 2.167900 CTCCCTTCGTCCGGAAATACTT 59.832 50.000 5.23 0.00 33.34 2.24
2285 2410 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
2286 2411 2.354403 CCCTTCGTCCGGAAATACTTGT 60.354 50.000 5.23 0.00 33.34 3.16
2287 2412 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
2288 2413 2.267188 TCGTCCGGAAATACTTGTCG 57.733 50.000 5.23 1.58 0.00 4.35
2289 2414 1.811965 TCGTCCGGAAATACTTGTCGA 59.188 47.619 5.23 4.55 0.00 4.20
2290 2415 2.228582 TCGTCCGGAAATACTTGTCGAA 59.771 45.455 5.23 0.00 0.00 3.71
2291 2416 2.597305 CGTCCGGAAATACTTGTCGAAG 59.403 50.000 5.23 0.00 35.07 3.79
2292 2417 3.671433 CGTCCGGAAATACTTGTCGAAGA 60.671 47.826 5.23 0.00 32.98 2.87
2293 2418 4.240096 GTCCGGAAATACTTGTCGAAGAA 58.760 43.478 5.23 0.00 39.69 2.52
2294 2419 4.687483 GTCCGGAAATACTTGTCGAAGAAA 59.313 41.667 5.23 0.00 39.69 2.52
2295 2420 5.350640 GTCCGGAAATACTTGTCGAAGAAAT 59.649 40.000 5.23 0.00 39.69 2.17
2296 2421 5.350365 TCCGGAAATACTTGTCGAAGAAATG 59.650 40.000 0.00 0.00 39.69 2.32
2297 2422 5.447279 CCGGAAATACTTGTCGAAGAAATGG 60.447 44.000 0.00 0.00 39.69 3.16
2298 2423 5.350365 CGGAAATACTTGTCGAAGAAATGGA 59.650 40.000 0.00 0.00 39.69 3.41
2299 2424 6.037172 CGGAAATACTTGTCGAAGAAATGGAT 59.963 38.462 0.00 0.00 39.69 3.41
2300 2425 7.223971 CGGAAATACTTGTCGAAGAAATGGATA 59.776 37.037 0.00 0.00 39.69 2.59
2301 2426 8.889717 GGAAATACTTGTCGAAGAAATGGATAA 58.110 33.333 0.00 0.00 39.69 1.75
2350 2475 5.973899 TGTCTAGATACATCCATCTCTGC 57.026 43.478 0.00 0.00 36.63 4.26
2351 2476 4.457257 TGTCTAGATACATCCATCTCTGCG 59.543 45.833 0.00 0.00 36.63 5.18
2352 2477 4.697828 GTCTAGATACATCCATCTCTGCGA 59.302 45.833 0.00 0.00 36.63 5.10
2353 2478 3.932545 AGATACATCCATCTCTGCGAC 57.067 47.619 0.00 0.00 28.83 5.19
2354 2479 3.225940 AGATACATCCATCTCTGCGACA 58.774 45.455 0.00 0.00 28.83 4.35
2355 2480 3.638627 AGATACATCCATCTCTGCGACAA 59.361 43.478 0.00 0.00 28.83 3.18
2356 2481 2.306341 ACATCCATCTCTGCGACAAG 57.694 50.000 0.00 0.00 0.00 3.16
2357 2482 1.552337 ACATCCATCTCTGCGACAAGT 59.448 47.619 0.00 0.00 0.00 3.16
2358 2483 2.760650 ACATCCATCTCTGCGACAAGTA 59.239 45.455 0.00 0.00 0.00 2.24
2359 2484 3.386078 ACATCCATCTCTGCGACAAGTAT 59.614 43.478 0.00 0.00 0.00 2.12
2360 2485 4.141846 ACATCCATCTCTGCGACAAGTATT 60.142 41.667 0.00 0.00 0.00 1.89
2361 2486 4.471904 TCCATCTCTGCGACAAGTATTT 57.528 40.909 0.00 0.00 0.00 1.40
2362 2487 4.433615 TCCATCTCTGCGACAAGTATTTC 58.566 43.478 0.00 0.00 0.00 2.17
2363 2488 3.557595 CCATCTCTGCGACAAGTATTTCC 59.442 47.826 0.00 0.00 0.00 3.13
2364 2489 2.876091 TCTCTGCGACAAGTATTTCCG 58.124 47.619 0.00 0.00 0.00 4.30
2365 2490 1.927174 CTCTGCGACAAGTATTTCCGG 59.073 52.381 0.00 0.00 0.00 5.14
2366 2491 1.546923 TCTGCGACAAGTATTTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
2367 2492 1.659098 CTGCGACAAGTATTTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
2368 2493 0.643820 GCGACAAGTATTTCCGGACG 59.356 55.000 1.83 1.53 0.00 4.79
2369 2494 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2370 2495 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2371 2496 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2372 2497 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2373 2498 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2374 2499 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2375 2500 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2386 2511 1.207329 ACGGAGGGAGTATGTGCTTTC 59.793 52.381 0.00 0.00 0.00 2.62
2466 2592 5.789054 AGGGGTAACTTTAGAGGAGCTTTTA 59.211 40.000 0.00 0.00 0.00 1.52
2587 2714 2.151202 GACTGAAATCGCAGAAACCCA 58.849 47.619 0.00 0.00 43.58 4.51
2619 2746 7.042658 CGACTAGGAAATCTTGTAATTAGTGGC 60.043 40.741 0.00 0.00 31.84 5.01
2693 2833 8.190784 CACCAGAGTTTTATTTCTGTTGACTTT 58.809 33.333 1.39 0.00 36.34 2.66
2703 2843 4.689612 TCTGTTGACTTTTACTGCCTCT 57.310 40.909 0.00 0.00 0.00 3.69
2768 2908 6.882610 ACATACAGAGCAAAATGAGTGAAA 57.117 33.333 0.00 0.00 0.00 2.69
2769 2909 7.275888 ACATACAGAGCAAAATGAGTGAAAA 57.724 32.000 0.00 0.00 0.00 2.29
2775 2915 7.229306 ACAGAGCAAAATGAGTGAAAATCTACA 59.771 33.333 0.00 0.00 0.00 2.74
2776 2916 7.536622 CAGAGCAAAATGAGTGAAAATCTACAC 59.463 37.037 0.00 0.00 37.30 2.90
2857 2997 9.676195 GTCTTATATTTAGAAACGAGGGAGTAC 57.324 37.037 0.00 0.00 0.00 2.73
2867 3007 2.897969 ACGAGGGAGTACATGTCAGTTT 59.102 45.455 0.00 0.00 0.00 2.66
2887 3027 2.656947 AACCTGTTTGGCAGCTTCTA 57.343 45.000 0.00 0.00 43.71 2.10
2902 3042 5.855395 GCAGCTTCTAAGATGTTTCTTGTTG 59.145 40.000 9.48 0.00 43.95 3.33
2905 3045 5.626955 GCTTCTAAGATGTTTCTTGTTGTGC 59.373 40.000 0.00 0.00 42.25 4.57
2983 3123 3.130160 GCTTTCTGCGGAGGCCTG 61.130 66.667 12.00 0.00 38.85 4.85
3046 3189 4.635765 CCATACATGATGTTCCAAGTTCGT 59.364 41.667 2.29 0.00 33.19 3.85
3058 3201 2.483876 CAAGTTCGTCTCAGCTTCCAA 58.516 47.619 0.00 0.00 0.00 3.53
3233 3377 3.614390 GCACTAGTTAAGAGTTGCTCGGT 60.614 47.826 0.00 0.00 35.36 4.69
3234 3378 3.921021 CACTAGTTAAGAGTTGCTCGGTG 59.079 47.826 0.00 0.00 35.36 4.94
3235 3379 1.797025 AGTTAAGAGTTGCTCGGTGC 58.203 50.000 0.00 0.00 43.25 5.01
3349 3495 3.817647 CTCCTTTTGCTTACTCTGCTTGT 59.182 43.478 0.00 0.00 0.00 3.16
3350 3496 4.207165 TCCTTTTGCTTACTCTGCTTGTT 58.793 39.130 0.00 0.00 0.00 2.83
3351 3497 4.036734 TCCTTTTGCTTACTCTGCTTGTTG 59.963 41.667 0.00 0.00 0.00 3.33
3352 3498 3.988379 TTTGCTTACTCTGCTTGTTGG 57.012 42.857 0.00 0.00 0.00 3.77
3353 3499 1.896220 TGCTTACTCTGCTTGTTGGG 58.104 50.000 0.00 0.00 0.00 4.12
3354 3500 1.142870 TGCTTACTCTGCTTGTTGGGT 59.857 47.619 0.00 0.00 0.00 4.51
3404 3550 5.127682 GGATGGATGTTTTGGAAGCAGTAAT 59.872 40.000 0.00 0.00 0.00 1.89
3420 3566 6.568869 AGCAGTAATGTCTGTAGATCTGAAC 58.431 40.000 5.18 0.00 37.70 3.18
3451 3597 2.877168 CTCTGCTTACATCTTGGATGGC 59.123 50.000 11.46 6.44 0.00 4.40
3488 3635 2.621055 CGAGAGTACCTTAGAGCATGCT 59.379 50.000 22.92 22.92 0.00 3.79
3496 3643 2.634940 CCTTAGAGCATGCTAGGCCTTA 59.365 50.000 22.74 6.43 0.00 2.69
3497 3644 3.306641 CCTTAGAGCATGCTAGGCCTTAG 60.307 52.174 22.74 15.59 0.00 2.18
3498 3645 2.094100 AGAGCATGCTAGGCCTTAGA 57.906 50.000 22.74 0.00 0.00 2.10
3499 3646 1.969923 AGAGCATGCTAGGCCTTAGAG 59.030 52.381 22.74 2.82 0.00 2.43
3596 5136 5.641636 GGCTTGGAACTTGTTTTCTTTTGAA 59.358 36.000 0.00 0.00 36.52 2.69
3627 5167 1.373497 CAAGGCTCTTGCGTCGTCT 60.373 57.895 2.58 0.00 40.82 4.18
3630 5170 2.176055 GCTCTTGCGTCGTCTCGA 59.824 61.111 0.00 0.00 0.00 4.04
3710 5735 3.554524 TCCGAACACGTTAGTTTACTCG 58.445 45.455 0.00 0.00 0.00 4.18
3716 5741 3.798337 ACACGTTAGTTTACTCGGTTGTG 59.202 43.478 0.00 0.00 0.00 3.33
3721 5746 5.288804 GTTAGTTTACTCGGTTGTGGTACA 58.711 41.667 0.00 0.00 0.00 2.90
3732 5757 3.368822 TGGTACACCCTCCGTTCG 58.631 61.111 0.00 0.00 34.29 3.95
3734 5759 1.080298 GGTACACCCTCCGTTCGTG 60.080 63.158 0.00 0.00 0.00 4.35
3750 6894 5.333263 CCGTTCGTGTTTATTTTTACTCCGT 60.333 40.000 0.00 0.00 0.00 4.69
3767 6911 6.687081 ACTCCGTGTAAGATTTGTTTGAAA 57.313 33.333 0.00 0.00 0.00 2.69
3844 7021 9.976511 ATTTCATGATGCATCTAAAGTTATTGG 57.023 29.630 26.32 0.93 0.00 3.16
3847 7024 8.623903 TCATGATGCATCTAAAGTTATTGGTTC 58.376 33.333 26.32 0.00 0.00 3.62
3848 7032 7.333528 TGATGCATCTAAAGTTATTGGTTCC 57.666 36.000 26.32 0.00 0.00 3.62
3849 7033 6.889177 TGATGCATCTAAAGTTATTGGTTCCA 59.111 34.615 26.32 0.00 0.00 3.53
3851 7035 8.995027 ATGCATCTAAAGTTATTGGTTCCATA 57.005 30.769 0.00 0.00 0.00 2.74
3862 7046 8.686334 AGTTATTGGTTCCATATTGTGAATGTC 58.314 33.333 0.00 0.00 0.00 3.06
3865 7049 4.634004 TGGTTCCATATTGTGAATGTCGAC 59.366 41.667 9.11 9.11 0.00 4.20
3866 7050 4.035208 GGTTCCATATTGTGAATGTCGACC 59.965 45.833 14.12 0.00 0.00 4.79
3871 7056 6.432783 TCCATATTGTGAATGTCGACCTTTTT 59.567 34.615 14.12 1.37 0.00 1.94
3943 7128 9.914834 TTATATGCTGACTAAAAATAAGGGTGT 57.085 29.630 0.00 0.00 0.00 4.16
3944 7129 5.957842 TGCTGACTAAAAATAAGGGTGTG 57.042 39.130 0.00 0.00 0.00 3.82
3945 7130 5.626142 TGCTGACTAAAAATAAGGGTGTGA 58.374 37.500 0.00 0.00 0.00 3.58
3946 7131 5.472137 TGCTGACTAAAAATAAGGGTGTGAC 59.528 40.000 0.00 0.00 0.00 3.67
3947 7132 5.705905 GCTGACTAAAAATAAGGGTGTGACT 59.294 40.000 0.00 0.00 0.00 3.41
3948 7133 6.877322 GCTGACTAAAAATAAGGGTGTGACTA 59.123 38.462 0.00 0.00 0.00 2.59
3949 7134 7.064728 GCTGACTAAAAATAAGGGTGTGACTAG 59.935 40.741 0.00 0.00 0.00 2.57
3950 7135 7.391620 TGACTAAAAATAAGGGTGTGACTAGG 58.608 38.462 0.00 0.00 0.00 3.02
3951 7136 7.016858 TGACTAAAAATAAGGGTGTGACTAGGT 59.983 37.037 0.00 0.00 0.00 3.08
3952 7137 7.392418 ACTAAAAATAAGGGTGTGACTAGGTC 58.608 38.462 0.00 0.00 0.00 3.85
3953 7138 6.449830 AAAAATAAGGGTGTGACTAGGTCT 57.550 37.500 0.00 0.00 33.15 3.85
3954 7139 5.678955 AAATAAGGGTGTGACTAGGTCTC 57.321 43.478 0.00 0.00 33.15 3.36
3955 7140 2.696526 AAGGGTGTGACTAGGTCTCA 57.303 50.000 0.00 0.00 34.38 3.27
3956 7141 2.223803 AGGGTGTGACTAGGTCTCAG 57.776 55.000 0.00 0.00 36.86 3.35
3957 7142 1.429687 AGGGTGTGACTAGGTCTCAGT 59.570 52.381 0.00 0.00 36.86 3.41
3958 7143 1.819903 GGGTGTGACTAGGTCTCAGTC 59.180 57.143 0.00 0.00 42.31 3.51
3965 7150 3.824151 GACTAGGTCTCAGTCAAACGAC 58.176 50.000 0.00 0.00 41.71 4.34
3966 7151 3.220110 ACTAGGTCTCAGTCAAACGACA 58.780 45.455 0.00 0.00 35.75 4.35
3967 7152 3.827302 ACTAGGTCTCAGTCAAACGACAT 59.173 43.478 0.00 0.00 35.75 3.06
3968 7153 5.008331 ACTAGGTCTCAGTCAAACGACATA 58.992 41.667 0.00 0.00 35.75 2.29
3969 7154 4.175787 AGGTCTCAGTCAAACGACATAC 57.824 45.455 0.00 0.00 35.75 2.39
3970 7155 3.056749 AGGTCTCAGTCAAACGACATACC 60.057 47.826 0.00 0.00 35.75 2.73
3971 7156 3.305813 GGTCTCAGTCAAACGACATACCA 60.306 47.826 0.00 0.00 35.75 3.25
3972 7157 4.495422 GTCTCAGTCAAACGACATACCAT 58.505 43.478 0.00 0.00 35.75 3.55
3973 7158 4.327357 GTCTCAGTCAAACGACATACCATG 59.673 45.833 0.00 0.00 35.75 3.66
3975 7160 5.184287 TCTCAGTCAAACGACATACCATGTA 59.816 40.000 0.00 0.00 45.03 2.29
3976 7161 5.785243 TCAGTCAAACGACATACCATGTAA 58.215 37.500 0.00 0.00 45.03 2.41
3977 7162 5.867174 TCAGTCAAACGACATACCATGTAAG 59.133 40.000 0.00 0.00 45.03 2.34
3978 7163 5.867174 CAGTCAAACGACATACCATGTAAGA 59.133 40.000 0.00 0.00 45.03 2.10
3979 7164 6.367695 CAGTCAAACGACATACCATGTAAGAA 59.632 38.462 0.00 0.00 45.03 2.52
3980 7165 6.932400 AGTCAAACGACATACCATGTAAGAAA 59.068 34.615 0.00 0.00 45.03 2.52
3981 7166 7.442969 AGTCAAACGACATACCATGTAAGAAAA 59.557 33.333 0.00 0.00 45.03 2.29
3982 7167 7.744715 GTCAAACGACATACCATGTAAGAAAAG 59.255 37.037 0.00 0.00 45.03 2.27
3983 7168 7.658167 TCAAACGACATACCATGTAAGAAAAGA 59.342 33.333 0.00 0.00 45.03 2.52
3984 7169 7.972832 AACGACATACCATGTAAGAAAAGAA 57.027 32.000 0.00 0.00 45.03 2.52
3985 7170 7.972832 ACGACATACCATGTAAGAAAAGAAA 57.027 32.000 0.00 0.00 45.03 2.52
3986 7171 8.385898 ACGACATACCATGTAAGAAAAGAAAA 57.614 30.769 0.00 0.00 45.03 2.29
3987 7172 8.504005 ACGACATACCATGTAAGAAAAGAAAAG 58.496 33.333 0.00 0.00 45.03 2.27
3988 7173 7.962918 CGACATACCATGTAAGAAAAGAAAAGG 59.037 37.037 0.00 0.00 45.03 3.11
3989 7174 8.934023 ACATACCATGTAAGAAAAGAAAAGGA 57.066 30.769 0.00 0.00 42.78 3.36
3990 7175 9.362151 ACATACCATGTAAGAAAAGAAAAGGAA 57.638 29.630 0.00 0.00 42.78 3.36
3991 7176 9.846248 CATACCATGTAAGAAAAGAAAAGGAAG 57.154 33.333 0.00 0.00 0.00 3.46
3992 7177 9.807921 ATACCATGTAAGAAAAGAAAAGGAAGA 57.192 29.630 0.00 0.00 0.00 2.87
3993 7178 8.712228 ACCATGTAAGAAAAGAAAAGGAAGAT 57.288 30.769 0.00 0.00 0.00 2.40
3994 7179 8.797438 ACCATGTAAGAAAAGAAAAGGAAGATC 58.203 33.333 0.00 0.00 0.00 2.75
3995 7180 8.796475 CCATGTAAGAAAAGAAAAGGAAGATCA 58.204 33.333 0.00 0.00 0.00 2.92
3996 7181 9.837525 CATGTAAGAAAAGAAAAGGAAGATCAG 57.162 33.333 0.00 0.00 0.00 2.90
3997 7182 9.799106 ATGTAAGAAAAGAAAAGGAAGATCAGA 57.201 29.630 0.00 0.00 0.00 3.27
3998 7183 9.627123 TGTAAGAAAAGAAAAGGAAGATCAGAA 57.373 29.630 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.692476 AGTAGCCCATGTTGTGCTCA 59.308 50.000 0.00 0.00 36.57 4.26
33 34 6.455360 AATCAAATAGTAGCCCATGTTGTG 57.545 37.500 0.00 0.00 0.00 3.33
51 52 9.337714 TCATGGAGGATAGATACCATTAATCAA 57.662 33.333 0.00 0.00 40.55 2.57
54 55 7.626890 AGCTCATGGAGGATAGATACCATTAAT 59.373 37.037 0.00 0.00 40.55 1.40
57 58 5.348833 AGCTCATGGAGGATAGATACCATT 58.651 41.667 0.00 0.00 40.55 3.16
59 60 4.410481 AGCTCATGGAGGATAGATACCA 57.590 45.455 0.00 0.00 36.83 3.25
88 89 2.189594 TGAGTTTGAGATGGTGCTGG 57.810 50.000 0.00 0.00 0.00 4.85
113 114 4.060205 GGCAAAGTGAGCATTTTTCATGT 58.940 39.130 0.00 0.00 0.00 3.21
116 117 2.360483 TCGGCAAAGTGAGCATTTTTCA 59.640 40.909 0.00 0.00 0.00 2.69
117 118 3.011949 TCGGCAAAGTGAGCATTTTTC 57.988 42.857 0.00 0.00 0.00 2.29
122 123 1.537202 GTCTTTCGGCAAAGTGAGCAT 59.463 47.619 8.55 0.00 40.16 3.79
123 124 0.944386 GTCTTTCGGCAAAGTGAGCA 59.056 50.000 8.55 0.00 40.16 4.26
136 137 8.723942 TCCTTTCTAGCTGATTATTGTCTTTC 57.276 34.615 0.00 0.00 0.00 2.62
145 146 3.244215 CCGGCATCCTTTCTAGCTGATTA 60.244 47.826 0.00 0.00 35.42 1.75
148 149 0.465705 CCGGCATCCTTTCTAGCTGA 59.534 55.000 0.00 0.00 35.42 4.26
151 152 1.517242 CATCCGGCATCCTTTCTAGC 58.483 55.000 0.00 0.00 0.00 3.42
164 165 0.740737 GACCTCAAAATGCCATCCGG 59.259 55.000 0.00 0.00 0.00 5.14
166 167 1.135721 GCAGACCTCAAAATGCCATCC 59.864 52.381 0.00 0.00 32.49 3.51
167 168 1.820519 TGCAGACCTCAAAATGCCATC 59.179 47.619 0.00 0.00 37.89 3.51
168 169 1.822990 CTGCAGACCTCAAAATGCCAT 59.177 47.619 8.42 0.00 37.89 4.40
169 170 1.250328 CTGCAGACCTCAAAATGCCA 58.750 50.000 8.42 0.00 37.89 4.92
181 183 2.644992 CAAAACGGGCCTGCAGAC 59.355 61.111 17.39 2.25 0.00 3.51
211 213 5.130477 TCTGGATCCCATTGTTTAGTAGGTC 59.870 44.000 9.90 0.00 30.82 3.85
216 218 5.016831 GGTTTCTGGATCCCATTGTTTAGT 58.983 41.667 9.90 0.00 30.82 2.24
311 313 1.821216 TCTCAAATTCCGGAGTTGCC 58.179 50.000 13.55 0.00 32.93 4.52
315 317 2.036733 TCACGTTCTCAAATTCCGGAGT 59.963 45.455 3.34 0.00 32.93 3.85
319 321 3.057019 TCACTCACGTTCTCAAATTCCG 58.943 45.455 0.00 0.00 0.00 4.30
333 335 4.806247 CGAAAGTTGGATAGGATCACTCAC 59.194 45.833 0.00 0.00 0.00 3.51
336 338 5.420409 GTTCGAAAGTTGGATAGGATCACT 58.580 41.667 0.00 0.00 0.00 3.41
354 356 2.295070 TGAGTTGTCGATTCTGGTTCGA 59.705 45.455 0.00 0.00 42.87 3.71
357 359 2.035449 TCGTGAGTTGTCGATTCTGGTT 59.965 45.455 0.00 0.00 0.00 3.67
367 369 0.319040 TCAGCTGCTCGTGAGTTGTC 60.319 55.000 9.47 0.00 0.00 3.18
368 370 0.104855 TTCAGCTGCTCGTGAGTTGT 59.895 50.000 9.47 0.00 0.00 3.32
409 460 1.812507 GTCGCCTTTAACCGCCGAT 60.813 57.895 0.00 0.00 0.00 4.18
411 462 2.319096 TTGTCGCCTTTAACCGCCG 61.319 57.895 0.00 0.00 0.00 6.46
414 465 1.073177 ATCGTTGTCGCCTTTAACCG 58.927 50.000 0.00 0.00 36.96 4.44
424 475 1.438651 ACATCCCAACATCGTTGTCG 58.561 50.000 0.00 0.00 34.06 4.35
431 482 5.357032 AGTTCGGAAAATACATCCCAACATC 59.643 40.000 5.97 0.00 39.60 3.06
450 501 9.829637 GCACTAGTTTAAATTTCAAAAAGTTCG 57.170 29.630 0.00 0.00 0.00 3.95
460 511 6.323197 GCATGCAGCACTAGTTTAAATTTC 57.677 37.500 14.21 0.00 44.79 2.17
484 535 7.575720 GCAAAAGGTACAGACATTCAAATAGCT 60.576 37.037 0.00 0.00 0.00 3.32
495 546 1.535028 CGCATGCAAAAGGTACAGACA 59.465 47.619 19.57 0.00 0.00 3.41
503 554 1.928503 CAAATAGCCGCATGCAAAAGG 59.071 47.619 19.57 11.79 44.83 3.11
505 556 3.119209 TGATCAAATAGCCGCATGCAAAA 60.119 39.130 19.57 0.00 44.83 2.44
565 616 7.552687 GGAAGGATGACATCAACACTATTTGTA 59.447 37.037 17.08 0.00 37.51 2.41
566 617 6.375455 GGAAGGATGACATCAACACTATTTGT 59.625 38.462 17.08 0.00 41.74 2.83
568 619 5.586243 CGGAAGGATGACATCAACACTATTT 59.414 40.000 17.08 0.00 0.00 1.40
573 624 1.398390 GCGGAAGGATGACATCAACAC 59.602 52.381 17.08 5.43 0.00 3.32
574 625 1.003003 TGCGGAAGGATGACATCAACA 59.997 47.619 17.08 3.09 0.00 3.33
587 638 1.787847 GTGAACACGGATGCGGAAG 59.212 57.895 12.44 2.85 0.00 3.46
602 653 1.386533 GATAGAGAACCGGTCCGTGA 58.613 55.000 8.04 0.00 0.00 4.35
604 655 0.033796 TGGATAGAGAACCGGTCCGT 60.034 55.000 8.04 0.00 0.00 4.69
605 656 1.000163 CATGGATAGAGAACCGGTCCG 60.000 57.143 8.04 3.60 0.00 4.79
606 657 2.317040 TCATGGATAGAGAACCGGTCC 58.683 52.381 8.04 2.79 0.00 4.46
607 658 3.132289 TGTTCATGGATAGAGAACCGGTC 59.868 47.826 8.04 0.95 40.58 4.79
608 659 3.104512 TGTTCATGGATAGAGAACCGGT 58.895 45.455 0.00 0.00 40.58 5.28
609 660 3.819564 TGTTCATGGATAGAGAACCGG 57.180 47.619 0.00 0.00 40.58 5.28
610 661 5.586243 ACATTTGTTCATGGATAGAGAACCG 59.414 40.000 0.00 0.00 40.58 4.44
612 663 6.183360 CCCACATTTGTTCATGGATAGAGAAC 60.183 42.308 0.00 0.00 41.42 3.01
613 664 5.887598 CCCACATTTGTTCATGGATAGAGAA 59.112 40.000 0.00 0.00 33.80 2.87
615 666 5.439721 TCCCACATTTGTTCATGGATAGAG 58.560 41.667 0.00 0.00 33.80 2.43
616 667 5.191522 TCTCCCACATTTGTTCATGGATAGA 59.808 40.000 0.00 0.00 33.80 1.98
617 668 5.439721 TCTCCCACATTTGTTCATGGATAG 58.560 41.667 0.00 0.00 33.80 2.08
618 669 5.449297 TCTCCCACATTTGTTCATGGATA 57.551 39.130 0.00 0.00 33.80 2.59
619 670 4.320546 TCTCCCACATTTGTTCATGGAT 57.679 40.909 0.00 0.00 33.80 3.41
622 673 7.733402 AAATTTTCTCCCACATTTGTTCATG 57.267 32.000 0.00 0.00 0.00 3.07
623 674 7.598493 CGTAAATTTTCTCCCACATTTGTTCAT 59.402 33.333 0.00 0.00 0.00 2.57
625 676 6.364976 CCGTAAATTTTCTCCCACATTTGTTC 59.635 38.462 0.00 0.00 0.00 3.18
626 677 6.220201 CCGTAAATTTTCTCCCACATTTGTT 58.780 36.000 0.00 0.00 0.00 2.83
629 680 4.836175 ACCCGTAAATTTTCTCCCACATTT 59.164 37.500 0.00 0.00 0.00 2.32
630 681 4.412843 ACCCGTAAATTTTCTCCCACATT 58.587 39.130 0.00 0.00 0.00 2.71
632 683 3.414269 GACCCGTAAATTTTCTCCCACA 58.586 45.455 0.00 0.00 0.00 4.17
634 685 2.302445 TCGACCCGTAAATTTTCTCCCA 59.698 45.455 0.00 0.00 0.00 4.37
661 715 1.334960 CCGTGCTGTTTGCTTGTTAGG 60.335 52.381 0.00 0.00 43.37 2.69
708 768 1.198759 TTTCCTCCCTTCCTCCCACG 61.199 60.000 0.00 0.00 0.00 4.94
754 814 7.962918 GTCGACTACCGTTTTCTATTTAGTGTA 59.037 37.037 8.70 0.00 39.75 2.90
755 815 6.803807 GTCGACTACCGTTTTCTATTTAGTGT 59.196 38.462 8.70 0.00 39.75 3.55
756 816 6.021939 CGTCGACTACCGTTTTCTATTTAGTG 60.022 42.308 14.70 0.00 39.75 2.74
757 817 6.024049 CGTCGACTACCGTTTTCTATTTAGT 58.976 40.000 14.70 0.00 39.75 2.24
758 818 5.453587 CCGTCGACTACCGTTTTCTATTTAG 59.546 44.000 14.70 0.00 39.75 1.85
759 819 5.331902 CCGTCGACTACCGTTTTCTATTTA 58.668 41.667 14.70 0.00 39.75 1.40
889 955 2.155197 GATCTGGCCTTGGGTTGGGT 62.155 60.000 3.32 0.00 0.00 4.51
890 956 1.380380 GATCTGGCCTTGGGTTGGG 60.380 63.158 3.32 0.00 0.00 4.12
891 957 0.682209 CTGATCTGGCCTTGGGTTGG 60.682 60.000 3.32 0.00 0.00 3.77
892 958 0.329261 TCTGATCTGGCCTTGGGTTG 59.671 55.000 3.32 0.00 0.00 3.77
893 959 1.213926 GATCTGATCTGGCCTTGGGTT 59.786 52.381 10.37 0.00 0.00 4.11
1231 1314 1.196012 GAGTGGAGGAGGGGTTAGTG 58.804 60.000 0.00 0.00 0.00 2.74
1232 1315 0.790993 TGAGTGGAGGAGGGGTTAGT 59.209 55.000 0.00 0.00 0.00 2.24
1241 1324 1.003646 ACTAGAGGCTGAGTGGAGGA 58.996 55.000 0.00 0.00 0.00 3.71
1242 1325 1.859302 AACTAGAGGCTGAGTGGAGG 58.141 55.000 0.00 0.00 0.00 4.30
1244 1327 3.010250 TGACTAACTAGAGGCTGAGTGGA 59.990 47.826 0.00 0.00 0.00 4.02
1328 1444 3.678289 TGAGATCAGGTCATGTTTGTGG 58.322 45.455 0.00 0.00 0.00 4.17
1329 1445 4.572909 TCTGAGATCAGGTCATGTTTGTG 58.427 43.478 9.87 0.00 43.91 3.33
1330 1446 4.897509 TCTGAGATCAGGTCATGTTTGT 57.102 40.909 9.87 0.00 43.91 2.83
1341 1457 6.416631 TTCTATCCCAACATCTGAGATCAG 57.583 41.667 3.33 3.33 45.08 2.90
1348 1464 6.401047 AATGCAATTCTATCCCAACATCTG 57.599 37.500 0.00 0.00 0.00 2.90
1425 1542 2.478134 GCAAGGCATGACGATGATCTAC 59.522 50.000 11.13 0.00 0.00 2.59
1448 1565 5.473846 TGCACATAGACTACTACTAGATGCC 59.526 44.000 0.00 0.00 35.58 4.40
1729 1846 2.250031 TGTCCCAAATGCAAGCATCTT 58.750 42.857 8.14 2.81 35.31 2.40
1775 1892 3.961480 AAGCACTGTATACTCAGCACA 57.039 42.857 4.17 0.00 38.84 4.57
1782 1899 3.804325 CGCAAGCATAAGCACTGTATACT 59.196 43.478 4.17 0.00 45.49 2.12
1784 1901 4.053469 TCGCAAGCATAAGCACTGTATA 57.947 40.909 0.00 0.00 45.49 1.47
1785 1902 2.905075 TCGCAAGCATAAGCACTGTAT 58.095 42.857 0.00 0.00 45.49 2.29
1804 1921 1.126113 CGGTGTGTATCTGCACGTTTC 59.874 52.381 0.00 0.00 41.94 2.78
1809 1928 1.660607 CATGACGGTGTGTATCTGCAC 59.339 52.381 0.00 0.00 39.65 4.57
1987 2106 7.621428 AAAATACTGAAGATGGAGATGTGTG 57.379 36.000 0.00 0.00 0.00 3.82
2018 2137 9.486857 GTGTACTCAAAAGTTAACAAGAAGAAC 57.513 33.333 8.61 0.00 36.92 3.01
2036 2155 3.981071 AATTGGCTGCTAGTGTACTCA 57.019 42.857 0.00 0.00 0.00 3.41
2049 2168 4.712051 TGCTACTGATCCATAATTGGCT 57.288 40.909 0.00 0.00 43.29 4.75
2116 2235 2.749621 GCTTTGTGGTATCAACAGGGAG 59.250 50.000 0.00 0.00 0.00 4.30
2122 2241 2.488153 GGAGGTGCTTTGTGGTATCAAC 59.512 50.000 0.00 0.00 0.00 3.18
2262 2387 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
2263 2388 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
2264 2389 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
2265 2390 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
2266 2391 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
2267 2392 2.597305 CGACAAGTATTTCCGGACGAAG 59.403 50.000 1.83 0.00 0.00 3.79
2268 2393 2.228582 TCGACAAGTATTTCCGGACGAA 59.771 45.455 1.83 0.00 0.00 3.85
2270 2395 2.267188 TCGACAAGTATTTCCGGACG 57.733 50.000 1.83 0.27 0.00 4.79
2271 2396 3.841643 TCTTCGACAAGTATTTCCGGAC 58.158 45.455 1.83 0.00 0.00 4.79
2272 2397 4.524316 TTCTTCGACAAGTATTTCCGGA 57.476 40.909 0.00 0.00 0.00 5.14
2273 2398 5.447279 CCATTTCTTCGACAAGTATTTCCGG 60.447 44.000 0.00 0.00 0.00 5.14
2274 2399 5.350365 TCCATTTCTTCGACAAGTATTTCCG 59.650 40.000 0.00 0.00 0.00 4.30
2275 2400 6.737254 TCCATTTCTTCGACAAGTATTTCC 57.263 37.500 0.00 0.00 0.00 3.13
2324 2449 8.694540 GCAGAGATGGATGTATCTAGACATATT 58.305 37.037 0.00 0.00 40.18 1.28
2325 2450 7.013178 CGCAGAGATGGATGTATCTAGACATAT 59.987 40.741 0.00 0.00 40.18 1.78
2326 2451 6.317391 CGCAGAGATGGATGTATCTAGACATA 59.683 42.308 0.00 0.00 40.18 2.29
2327 2452 5.125257 CGCAGAGATGGATGTATCTAGACAT 59.875 44.000 0.00 0.00 42.82 3.06
2328 2453 4.457257 CGCAGAGATGGATGTATCTAGACA 59.543 45.833 0.00 0.00 37.53 3.41
2329 2454 4.697828 TCGCAGAGATGGATGTATCTAGAC 59.302 45.833 0.00 0.00 37.53 2.59
2330 2455 4.697828 GTCGCAGAGATGGATGTATCTAGA 59.302 45.833 0.00 0.00 37.53 2.43
2331 2456 4.457257 TGTCGCAGAGATGGATGTATCTAG 59.543 45.833 0.00 0.00 37.53 2.43
2332 2457 4.398319 TGTCGCAGAGATGGATGTATCTA 58.602 43.478 0.00 0.00 37.53 1.98
2333 2458 3.225940 TGTCGCAGAGATGGATGTATCT 58.774 45.455 0.00 0.00 40.02 1.98
2334 2459 3.650070 TGTCGCAGAGATGGATGTATC 57.350 47.619 0.00 0.00 36.95 2.24
2335 2460 3.386078 ACTTGTCGCAGAGATGGATGTAT 59.614 43.478 0.00 0.00 36.95 2.29
2336 2461 2.760650 ACTTGTCGCAGAGATGGATGTA 59.239 45.455 0.00 0.00 36.95 2.29
2337 2462 1.552337 ACTTGTCGCAGAGATGGATGT 59.448 47.619 0.00 0.00 36.95 3.06
2338 2463 2.306341 ACTTGTCGCAGAGATGGATG 57.694 50.000 0.00 0.00 36.95 3.51
2339 2464 4.679373 AATACTTGTCGCAGAGATGGAT 57.321 40.909 0.00 0.00 36.95 3.41
2340 2465 4.433615 GAAATACTTGTCGCAGAGATGGA 58.566 43.478 0.00 0.00 36.95 3.41
2341 2466 3.557595 GGAAATACTTGTCGCAGAGATGG 59.442 47.826 0.00 0.00 36.95 3.51
2342 2467 3.243877 CGGAAATACTTGTCGCAGAGATG 59.756 47.826 0.00 0.00 36.95 2.90
2343 2468 3.448686 CGGAAATACTTGTCGCAGAGAT 58.551 45.455 0.00 0.00 36.95 2.75
2344 2469 2.416836 CCGGAAATACTTGTCGCAGAGA 60.417 50.000 0.00 0.00 36.95 3.10
2345 2470 1.927174 CCGGAAATACTTGTCGCAGAG 59.073 52.381 0.00 0.00 36.95 3.35
2346 2471 1.546923 TCCGGAAATACTTGTCGCAGA 59.453 47.619 0.00 0.00 0.00 4.26
2347 2472 1.659098 GTCCGGAAATACTTGTCGCAG 59.341 52.381 5.23 0.00 0.00 5.18
2348 2473 1.717194 GTCCGGAAATACTTGTCGCA 58.283 50.000 5.23 0.00 0.00 5.10
2349 2474 0.643820 CGTCCGGAAATACTTGTCGC 59.356 55.000 5.23 0.00 0.00 5.19
2350 2475 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2351 2476 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2352 2477 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2353 2478 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2354 2479 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2355 2480 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2356 2481 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2357 2482 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2358 2483 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2359 2484 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2360 2485 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
2361 2486 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
2362 2487 1.455217 ACATACTCCCTCCGTCCGG 60.455 63.158 0.00 0.00 0.00 5.14
2363 2488 1.734137 CACATACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
2364 2489 1.043673 AGCACATACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
2365 2490 0.824759 AAGCACATACTCCCTCCGTC 59.175 55.000 0.00 0.00 0.00 4.79
2366 2491 1.207329 GAAAGCACATACTCCCTCCGT 59.793 52.381 0.00 0.00 0.00 4.69
2367 2492 1.473434 GGAAAGCACATACTCCCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
2368 2493 1.840635 AGGAAAGCACATACTCCCTCC 59.159 52.381 0.00 0.00 0.00 4.30
2369 2494 3.636153 AAGGAAAGCACATACTCCCTC 57.364 47.619 0.00 0.00 0.00 4.30
2370 2495 3.844211 TGTAAGGAAAGCACATACTCCCT 59.156 43.478 0.00 0.00 0.00 4.20
2371 2496 4.081087 TCTGTAAGGAAAGCACATACTCCC 60.081 45.833 0.00 0.00 0.00 4.30
2372 2497 5.086104 TCTGTAAGGAAAGCACATACTCC 57.914 43.478 0.00 0.00 0.00 3.85
2373 2498 7.435068 TTTTCTGTAAGGAAAGCACATACTC 57.565 36.000 0.00 0.00 36.23 2.59
2374 2499 9.686683 ATATTTTCTGTAAGGAAAGCACATACT 57.313 29.630 0.00 0.00 46.40 2.12
2375 2500 9.722056 CATATTTTCTGTAAGGAAAGCACATAC 57.278 33.333 0.00 0.00 46.40 2.39
2436 2562 4.106324 CCTCTAAAGTTACCCCTTACCCA 58.894 47.826 0.00 0.00 0.00 4.51
2610 2737 5.590259 CACTTGCCAATAGTAGCCACTAATT 59.410 40.000 0.00 0.00 40.61 1.40
2693 2833 8.429641 CCTTATATTTAGGAACAGAGGCAGTAA 58.570 37.037 0.00 0.00 34.56 2.24
2698 2838 5.870706 AGCCTTATATTTAGGAACAGAGGC 58.129 41.667 7.56 0.00 45.64 4.70
2739 2879 6.048732 TCATTTTGCTCTGTATGTAGTCCA 57.951 37.500 0.00 0.00 0.00 4.02
2741 2881 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2799 2939 3.374220 TTCAATACGGGCTACATACGG 57.626 47.619 0.00 0.00 0.00 4.02
2847 2987 3.594603 AAACTGACATGTACTCCCTCG 57.405 47.619 0.00 0.00 0.00 4.63
2857 2997 4.202101 TGCCAAACAGGTTAAACTGACATG 60.202 41.667 27.07 19.27 40.97 3.21
2887 3027 4.370364 AACGCACAACAAGAAACATCTT 57.630 36.364 0.00 0.00 0.00 2.40
2902 3042 2.005537 CGCTCTGCAACAAACGCAC 61.006 57.895 0.00 0.00 35.08 5.34
2905 3045 1.369209 CACCGCTCTGCAACAAACG 60.369 57.895 0.00 0.00 0.00 3.60
2983 3123 0.179000 ATCTGCACGATGGAAGGGAC 59.821 55.000 0.00 0.00 0.00 4.46
3058 3201 4.142038 ACCAAAACATAAGGTTCTCGCTT 58.858 39.130 0.00 0.00 39.29 4.68
3064 3207 6.385649 TCTGTTGACCAAAACATAAGGTTC 57.614 37.500 0.00 0.00 39.29 3.62
3233 3377 1.887242 GACGAACCAGTGCAGTGCA 60.887 57.895 15.37 15.37 35.60 4.57
3234 3378 2.939022 GACGAACCAGTGCAGTGC 59.061 61.111 16.47 8.58 0.00 4.40
3235 3379 0.874175 TTCGACGAACCAGTGCAGTG 60.874 55.000 14.95 14.95 0.00 3.66
3236 3380 0.179094 TTTCGACGAACCAGTGCAGT 60.179 50.000 10.38 0.00 0.00 4.40
3237 3381 1.148310 ATTTCGACGAACCAGTGCAG 58.852 50.000 10.38 0.00 0.00 4.41
3280 3424 5.704515 CAGTGTTCACATCTTCTCCAGAAAT 59.295 40.000 5.74 0.00 34.16 2.17
3289 3433 3.499918 CCCTGTTCAGTGTTCACATCTTC 59.500 47.826 5.74 0.00 0.00 2.87
3324 3468 4.260170 AGCAGAGTAAGCAAAAGGAGATG 58.740 43.478 0.00 0.00 0.00 2.90
3349 3495 2.762887 TGACAATTTGCTCAACACCCAA 59.237 40.909 0.00 0.00 0.00 4.12
3350 3496 2.361757 CTGACAATTTGCTCAACACCCA 59.638 45.455 0.00 0.00 0.00 4.51
3351 3497 2.863704 GCTGACAATTTGCTCAACACCC 60.864 50.000 0.00 0.00 0.00 4.61
3352 3498 2.035066 AGCTGACAATTTGCTCAACACC 59.965 45.455 0.00 0.00 30.41 4.16
3353 3499 3.360249 AGCTGACAATTTGCTCAACAC 57.640 42.857 0.00 0.00 30.41 3.32
3354 3500 7.252708 CAATATAGCTGACAATTTGCTCAACA 58.747 34.615 0.00 0.00 38.15 3.33
3404 3550 4.521130 AAAGCGTTCAGATCTACAGACA 57.479 40.909 0.00 0.00 0.00 3.41
3420 3566 1.264020 TGTAAGCAGAGCACAAAAGCG 59.736 47.619 0.00 0.00 40.15 4.68
3451 3597 4.724697 CGTTGCGCTGCTTCCACG 62.725 66.667 9.73 1.86 0.00 4.94
3537 5076 4.247380 GGAGCCCAGATGCCGGAG 62.247 72.222 5.05 0.00 0.00 4.63
3577 5116 8.382875 CAGTTCATTCAAAAGAAAACAAGTTCC 58.617 33.333 0.00 0.00 0.00 3.62
3596 5136 1.878775 GCCTTGCGCTTCAGTTCAT 59.121 52.632 9.73 0.00 0.00 2.57
3627 5167 4.436242 AGTGCTTATTTTCTCGAGTCGA 57.564 40.909 15.64 15.64 0.00 4.20
3630 5170 5.406780 CACAGAAGTGCTTATTTTCTCGAGT 59.593 40.000 13.13 0.00 39.21 4.18
3632 5172 5.845985 CACAGAAGTGCTTATTTTCTCGA 57.154 39.130 0.00 0.00 39.21 4.04
3677 5699 0.976073 TGTTCGGATCCCCTCCACTC 60.976 60.000 6.06 0.00 45.24 3.51
3678 5700 1.080354 TGTTCGGATCCCCTCCACT 59.920 57.895 6.06 0.00 45.24 4.00
3679 5701 1.221021 GTGTTCGGATCCCCTCCAC 59.779 63.158 6.06 4.53 45.24 4.02
3680 5702 2.355986 CGTGTTCGGATCCCCTCCA 61.356 63.158 6.06 0.00 45.24 3.86
3681 5703 1.896122 AACGTGTTCGGATCCCCTCC 61.896 60.000 6.06 0.00 41.85 4.30
3684 5706 0.533951 ACTAACGTGTTCGGATCCCC 59.466 55.000 6.06 0.00 41.85 4.81
3688 5710 4.161333 CGAGTAAACTAACGTGTTCGGAT 58.839 43.478 0.00 0.00 41.85 4.18
3689 5711 3.554524 CGAGTAAACTAACGTGTTCGGA 58.445 45.455 0.00 0.00 41.85 4.55
3690 5712 2.658325 CCGAGTAAACTAACGTGTTCGG 59.342 50.000 0.00 0.00 41.85 4.30
3716 5741 1.080298 CACGAACGGAGGGTGTACC 60.080 63.158 0.00 0.00 40.67 3.34
3721 5746 2.845363 AATAAACACGAACGGAGGGT 57.155 45.000 0.00 0.00 0.00 4.34
3728 5753 6.421405 ACACGGAGTAAAAATAAACACGAAC 58.579 36.000 0.00 0.00 41.61 3.95
3730 5755 7.651304 TCTTACACGGAGTAAAAATAAACACGA 59.349 33.333 0.00 0.00 41.61 4.35
3731 5756 7.786114 TCTTACACGGAGTAAAAATAAACACG 58.214 34.615 4.62 0.00 41.61 4.49
3844 7021 4.876107 AGGTCGACATTCACAATATGGAAC 59.124 41.667 18.91 0.00 0.00 3.62
3847 7024 5.818136 AAAGGTCGACATTCACAATATGG 57.182 39.130 16.69 0.00 0.00 2.74
3928 7113 7.621796 AGACCTAGTCACACCCTTATTTTTAG 58.378 38.462 0.00 0.00 34.60 1.85
3929 7114 7.236019 TGAGACCTAGTCACACCCTTATTTTTA 59.764 37.037 0.00 0.00 34.60 1.52
3930 7115 6.043938 TGAGACCTAGTCACACCCTTATTTTT 59.956 38.462 0.00 0.00 34.60 1.94
3931 7116 5.546499 TGAGACCTAGTCACACCCTTATTTT 59.454 40.000 0.00 0.00 34.60 1.82
3932 7117 5.091552 TGAGACCTAGTCACACCCTTATTT 58.908 41.667 0.00 0.00 34.60 1.40
3933 7118 4.684724 TGAGACCTAGTCACACCCTTATT 58.315 43.478 0.00 0.00 34.60 1.40
3934 7119 4.264442 ACTGAGACCTAGTCACACCCTTAT 60.264 45.833 0.00 0.00 34.60 1.73
3935 7120 3.075582 ACTGAGACCTAGTCACACCCTTA 59.924 47.826 0.00 0.00 34.60 2.69
3936 7121 2.158295 ACTGAGACCTAGTCACACCCTT 60.158 50.000 0.00 0.00 34.60 3.95
3937 7122 1.429687 ACTGAGACCTAGTCACACCCT 59.570 52.381 0.00 0.00 34.60 4.34
3938 7123 1.819903 GACTGAGACCTAGTCACACCC 59.180 57.143 0.00 0.00 43.12 4.61
3939 7124 2.515854 TGACTGAGACCTAGTCACACC 58.484 52.381 3.89 0.00 46.92 4.16
3944 7129 3.252701 TGTCGTTTGACTGAGACCTAGTC 59.747 47.826 0.00 0.00 45.70 2.59
3945 7130 3.220110 TGTCGTTTGACTGAGACCTAGT 58.780 45.455 0.00 0.00 45.70 2.57
3946 7131 3.917329 TGTCGTTTGACTGAGACCTAG 57.083 47.619 0.00 0.00 45.70 3.02
3947 7132 4.157289 GGTATGTCGTTTGACTGAGACCTA 59.843 45.833 0.00 0.00 45.70 3.08
3948 7133 3.056749 GGTATGTCGTTTGACTGAGACCT 60.057 47.826 0.00 0.00 45.70 3.85
3949 7134 3.251571 GGTATGTCGTTTGACTGAGACC 58.748 50.000 0.00 0.00 45.70 3.85
3950 7135 3.909430 TGGTATGTCGTTTGACTGAGAC 58.091 45.455 0.00 0.00 45.70 3.36
3951 7136 4.021456 ACATGGTATGTCGTTTGACTGAGA 60.021 41.667 0.00 0.00 45.70 3.27
3952 7137 4.245660 ACATGGTATGTCGTTTGACTGAG 58.754 43.478 0.00 0.00 45.70 3.35
3953 7138 4.265904 ACATGGTATGTCGTTTGACTGA 57.734 40.909 0.00 0.00 45.70 3.41
3954 7139 5.867174 TCTTACATGGTATGTCGTTTGACTG 59.133 40.000 0.00 0.00 45.70 3.51
3955 7140 6.032956 TCTTACATGGTATGTCGTTTGACT 57.967 37.500 0.00 0.00 45.70 3.41
3956 7141 6.715344 TTCTTACATGGTATGTCGTTTGAC 57.285 37.500 0.00 0.00 43.67 3.18
3957 7142 7.658167 TCTTTTCTTACATGGTATGTCGTTTGA 59.342 33.333 0.00 0.00 43.67 2.69
3958 7143 7.802738 TCTTTTCTTACATGGTATGTCGTTTG 58.197 34.615 0.00 0.00 43.67 2.93
3959 7144 7.972832 TCTTTTCTTACATGGTATGTCGTTT 57.027 32.000 0.00 0.00 43.67 3.60
3960 7145 7.972832 TTCTTTTCTTACATGGTATGTCGTT 57.027 32.000 0.00 0.00 43.67 3.85
3961 7146 7.972832 TTTCTTTTCTTACATGGTATGTCGT 57.027 32.000 0.00 0.00 43.67 4.34
3962 7147 7.962918 CCTTTTCTTTTCTTACATGGTATGTCG 59.037 37.037 0.00 0.00 43.67 4.35
3963 7148 9.010029 TCCTTTTCTTTTCTTACATGGTATGTC 57.990 33.333 0.00 0.00 43.67 3.06
3964 7149 8.934023 TCCTTTTCTTTTCTTACATGGTATGT 57.066 30.769 0.00 0.00 46.92 2.29
3965 7150 9.846248 CTTCCTTTTCTTTTCTTACATGGTATG 57.154 33.333 0.00 0.00 0.00 2.39
3966 7151 9.807921 TCTTCCTTTTCTTTTCTTACATGGTAT 57.192 29.630 0.00 0.00 0.00 2.73
3967 7152 9.807921 ATCTTCCTTTTCTTTTCTTACATGGTA 57.192 29.630 0.00 0.00 0.00 3.25
3968 7153 8.712228 ATCTTCCTTTTCTTTTCTTACATGGT 57.288 30.769 0.00 0.00 0.00 3.55
3969 7154 8.796475 TGATCTTCCTTTTCTTTTCTTACATGG 58.204 33.333 0.00 0.00 0.00 3.66
3970 7155 9.837525 CTGATCTTCCTTTTCTTTTCTTACATG 57.162 33.333 0.00 0.00 0.00 3.21
3971 7156 9.799106 TCTGATCTTCCTTTTCTTTTCTTACAT 57.201 29.630 0.00 0.00 0.00 2.29
3972 7157 9.627123 TTCTGATCTTCCTTTTCTTTTCTTACA 57.373 29.630 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.