Multiple sequence alignment - TraesCS7A01G327900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G327900 | chr7A | 100.000 | 2672 | 0 | 0 | 1 | 2672 | 476937546 | 476934875 | 0.000000e+00 | 4935.0 |
1 | TraesCS7A01G327900 | chr7D | 93.187 | 2143 | 78 | 25 | 546 | 2672 | 414490466 | 414488376 | 0.000000e+00 | 3086.0 |
2 | TraesCS7A01G327900 | chr7D | 86.420 | 162 | 19 | 2 | 209 | 369 | 414490629 | 414490470 | 9.830000e-40 | 174.0 |
3 | TraesCS7A01G327900 | chr7D | 92.683 | 123 | 2 | 4 | 1 | 122 | 414490833 | 414490717 | 1.270000e-38 | 171.0 |
4 | TraesCS7A01G327900 | chr7B | 92.197 | 2153 | 107 | 35 | 546 | 2672 | 428922109 | 428919992 | 0.000000e+00 | 2988.0 |
5 | TraesCS7A01G327900 | chr7B | 85.890 | 163 | 11 | 7 | 209 | 362 | 428922650 | 428922491 | 2.130000e-36 | 163.0 |
6 | TraesCS7A01G327900 | chr7B | 83.908 | 87 | 10 | 4 | 292 | 375 | 86639497 | 86639582 | 2.210000e-11 | 80.5 |
7 | TraesCS7A01G327900 | chr2B | 86.316 | 190 | 23 | 3 | 1461 | 1649 | 568635419 | 568635606 | 1.250000e-48 | 204.0 |
8 | TraesCS7A01G327900 | chr2B | 87.582 | 153 | 19 | 0 | 1175 | 1327 | 568634964 | 568635116 | 7.600000e-41 | 178.0 |
9 | TraesCS7A01G327900 | chr2A | 86.559 | 186 | 23 | 2 | 1465 | 1649 | 627610960 | 627611144 | 1.250000e-48 | 204.0 |
10 | TraesCS7A01G327900 | chr2A | 86.928 | 153 | 20 | 0 | 1175 | 1327 | 627610493 | 627610645 | 3.540000e-39 | 172.0 |
11 | TraesCS7A01G327900 | chr2D | 86.022 | 186 | 24 | 2 | 1465 | 1649 | 483785942 | 483786126 | 5.830000e-47 | 198.0 |
12 | TraesCS7A01G327900 | chr2D | 88.889 | 153 | 17 | 0 | 1175 | 1327 | 483785481 | 483785633 | 3.510000e-44 | 189.0 |
13 | TraesCS7A01G327900 | chr2D | 80.702 | 171 | 28 | 4 | 209 | 376 | 304397253 | 304397421 | 7.760000e-26 | 128.0 |
14 | TraesCS7A01G327900 | chr4D | 83.234 | 167 | 24 | 3 | 213 | 376 | 435600971 | 435601136 | 1.660000e-32 | 150.0 |
15 | TraesCS7A01G327900 | chr4D | 81.657 | 169 | 26 | 4 | 211 | 376 | 335353205 | 335353039 | 4.640000e-28 | 135.0 |
16 | TraesCS7A01G327900 | chr4B | 80.814 | 172 | 27 | 6 | 213 | 379 | 541128106 | 541127936 | 2.160000e-26 | 130.0 |
17 | TraesCS7A01G327900 | chr5A | 81.102 | 127 | 24 | 0 | 211 | 337 | 610234453 | 610234327 | 4.710000e-18 | 102.0 |
18 | TraesCS7A01G327900 | chr3B | 86.301 | 73 | 6 | 4 | 310 | 379 | 755804763 | 755804692 | 2.850000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G327900 | chr7A | 476934875 | 476937546 | 2671 | True | 4935.000000 | 4935 | 100.000000 | 1 | 2672 | 1 | chr7A.!!$R1 | 2671 |
1 | TraesCS7A01G327900 | chr7D | 414488376 | 414490833 | 2457 | True | 1143.666667 | 3086 | 90.763333 | 1 | 2672 | 3 | chr7D.!!$R1 | 2671 |
2 | TraesCS7A01G327900 | chr7B | 428919992 | 428922650 | 2658 | True | 1575.500000 | 2988 | 89.043500 | 209 | 2672 | 2 | chr7B.!!$R1 | 2463 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
514 | 557 | 0.038526 | ACGTAACCAAGTCTCAGCCG | 60.039 | 55.0 | 0.0 | 0.0 | 0.0 | 5.52 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2109 | 2492 | 1.107945 | CTGCCATCACCATTCATGCA | 58.892 | 50.0 | 0.0 | 0.0 | 0.0 | 3.96 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
37 | 39 | 5.641636 | GGCTTGGAACTTGTTTTCTTTTGAA | 59.358 | 36.000 | 0.00 | 0.00 | 36.52 | 2.69 |
68 | 70 | 1.373497 | CAAGGCTCTTGCGTCGTCT | 60.373 | 57.895 | 2.58 | 0.00 | 40.82 | 4.18 |
69 | 71 | 1.080434 | AAGGCTCTTGCGTCGTCTC | 60.080 | 57.895 | 0.00 | 0.00 | 40.82 | 3.36 |
70 | 72 | 2.804368 | AAGGCTCTTGCGTCGTCTCG | 62.804 | 60.000 | 0.00 | 0.00 | 40.82 | 4.04 |
71 | 73 | 2.176055 | GCTCTTGCGTCGTCTCGA | 59.824 | 61.111 | 0.00 | 0.00 | 0.00 | 4.04 |
139 | 141 | 2.499685 | GGAGGGGATCCGAACACG | 59.500 | 66.667 | 5.45 | 0.00 | 38.67 | 4.49 |
140 | 142 | 2.356780 | GGAGGGGATCCGAACACGT | 61.357 | 63.158 | 5.45 | 0.00 | 38.67 | 4.49 |
141 | 143 | 1.595357 | GAGGGGATCCGAACACGTT | 59.405 | 57.895 | 5.45 | 0.00 | 38.33 | 3.99 |
151 | 153 | 3.554524 | TCCGAACACGTTAGTTTACTCG | 58.445 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
157 | 159 | 3.798337 | ACACGTTAGTTTACTCGGTTGTG | 59.202 | 43.478 | 0.00 | 0.00 | 0.00 | 3.33 |
162 | 164 | 5.288804 | GTTAGTTTACTCGGTTGTGGTACA | 58.711 | 41.667 | 0.00 | 0.00 | 0.00 | 2.90 |
173 | 175 | 3.368822 | TGGTACACCCTCCGTTCG | 58.631 | 61.111 | 0.00 | 0.00 | 34.29 | 3.95 |
174 | 176 | 1.531365 | TGGTACACCCTCCGTTCGT | 60.531 | 57.895 | 0.00 | 0.00 | 34.29 | 3.85 |
175 | 177 | 1.080298 | GGTACACCCTCCGTTCGTG | 60.080 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
191 | 193 | 5.333263 | CCGTTCGTGTTTATTTTTACTCCGT | 60.333 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
192 | 194 | 5.557405 | CGTTCGTGTTTATTTTTACTCCGTG | 59.443 | 40.000 | 0.00 | 0.00 | 0.00 | 4.94 |
285 | 320 | 9.976511 | ATTTCATGATGCATCTAAAGTTATTGG | 57.023 | 29.630 | 26.32 | 0.93 | 0.00 | 3.16 |
288 | 323 | 8.623903 | TCATGATGCATCTAAAGTTATTGGTTC | 58.376 | 33.333 | 26.32 | 0.00 | 0.00 | 3.62 |
289 | 331 | 7.333528 | TGATGCATCTAAAGTTATTGGTTCC | 57.666 | 36.000 | 26.32 | 0.00 | 0.00 | 3.62 |
290 | 332 | 6.889177 | TGATGCATCTAAAGTTATTGGTTCCA | 59.111 | 34.615 | 26.32 | 0.00 | 0.00 | 3.53 |
292 | 334 | 8.995027 | ATGCATCTAAAGTTATTGGTTCCATA | 57.005 | 30.769 | 0.00 | 0.00 | 0.00 | 2.74 |
303 | 345 | 8.686334 | AGTTATTGGTTCCATATTGTGAATGTC | 58.314 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
306 | 348 | 4.634004 | TGGTTCCATATTGTGAATGTCGAC | 59.366 | 41.667 | 9.11 | 9.11 | 0.00 | 4.20 |
307 | 349 | 4.035208 | GGTTCCATATTGTGAATGTCGACC | 59.965 | 45.833 | 14.12 | 0.00 | 0.00 | 4.79 |
312 | 355 | 6.432783 | TCCATATTGTGAATGTCGACCTTTTT | 59.567 | 34.615 | 14.12 | 1.37 | 0.00 | 1.94 |
384 | 427 | 9.914834 | TTATATGCTGACTAAAAATAAGGGTGT | 57.085 | 29.630 | 0.00 | 0.00 | 0.00 | 4.16 |
385 | 428 | 5.957842 | TGCTGACTAAAAATAAGGGTGTG | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 3.82 |
386 | 429 | 5.626142 | TGCTGACTAAAAATAAGGGTGTGA | 58.374 | 37.500 | 0.00 | 0.00 | 0.00 | 3.58 |
387 | 430 | 5.472137 | TGCTGACTAAAAATAAGGGTGTGAC | 59.528 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
388 | 431 | 5.705905 | GCTGACTAAAAATAAGGGTGTGACT | 59.294 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
389 | 432 | 6.877322 | GCTGACTAAAAATAAGGGTGTGACTA | 59.123 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
390 | 433 | 7.064728 | GCTGACTAAAAATAAGGGTGTGACTAG | 59.935 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
391 | 434 | 7.391620 | TGACTAAAAATAAGGGTGTGACTAGG | 58.608 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
392 | 435 | 7.016858 | TGACTAAAAATAAGGGTGTGACTAGGT | 59.983 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
393 | 436 | 7.392418 | ACTAAAAATAAGGGTGTGACTAGGTC | 58.608 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
394 | 437 | 6.449830 | AAAAATAAGGGTGTGACTAGGTCT | 57.550 | 37.500 | 0.00 | 0.00 | 33.15 | 3.85 |
395 | 438 | 5.678955 | AAATAAGGGTGTGACTAGGTCTC | 57.321 | 43.478 | 0.00 | 0.00 | 33.15 | 3.36 |
396 | 439 | 2.696526 | AAGGGTGTGACTAGGTCTCA | 57.303 | 50.000 | 0.00 | 0.00 | 34.38 | 3.27 |
397 | 440 | 2.223803 | AGGGTGTGACTAGGTCTCAG | 57.776 | 55.000 | 0.00 | 0.00 | 36.86 | 3.35 |
398 | 441 | 1.429687 | AGGGTGTGACTAGGTCTCAGT | 59.570 | 52.381 | 0.00 | 0.00 | 36.86 | 3.41 |
399 | 442 | 1.819903 | GGGTGTGACTAGGTCTCAGTC | 59.180 | 57.143 | 0.00 | 0.00 | 42.31 | 3.51 |
406 | 449 | 3.824151 | GACTAGGTCTCAGTCAAACGAC | 58.176 | 50.000 | 0.00 | 0.00 | 41.71 | 4.34 |
407 | 450 | 3.220110 | ACTAGGTCTCAGTCAAACGACA | 58.780 | 45.455 | 0.00 | 0.00 | 35.75 | 4.35 |
408 | 451 | 3.827302 | ACTAGGTCTCAGTCAAACGACAT | 59.173 | 43.478 | 0.00 | 0.00 | 35.75 | 3.06 |
409 | 452 | 5.008331 | ACTAGGTCTCAGTCAAACGACATA | 58.992 | 41.667 | 0.00 | 0.00 | 35.75 | 2.29 |
410 | 453 | 4.175787 | AGGTCTCAGTCAAACGACATAC | 57.824 | 45.455 | 0.00 | 0.00 | 35.75 | 2.39 |
411 | 454 | 3.056749 | AGGTCTCAGTCAAACGACATACC | 60.057 | 47.826 | 0.00 | 0.00 | 35.75 | 2.73 |
412 | 455 | 3.305813 | GGTCTCAGTCAAACGACATACCA | 60.306 | 47.826 | 0.00 | 0.00 | 35.75 | 3.25 |
413 | 456 | 4.495422 | GTCTCAGTCAAACGACATACCAT | 58.505 | 43.478 | 0.00 | 0.00 | 35.75 | 3.55 |
414 | 457 | 4.327357 | GTCTCAGTCAAACGACATACCATG | 59.673 | 45.833 | 0.00 | 0.00 | 35.75 | 3.66 |
416 | 459 | 5.184287 | TCTCAGTCAAACGACATACCATGTA | 59.816 | 40.000 | 0.00 | 0.00 | 45.03 | 2.29 |
417 | 460 | 5.785243 | TCAGTCAAACGACATACCATGTAA | 58.215 | 37.500 | 0.00 | 0.00 | 45.03 | 2.41 |
418 | 461 | 5.867174 | TCAGTCAAACGACATACCATGTAAG | 59.133 | 40.000 | 0.00 | 0.00 | 45.03 | 2.34 |
419 | 462 | 5.867174 | CAGTCAAACGACATACCATGTAAGA | 59.133 | 40.000 | 0.00 | 0.00 | 45.03 | 2.10 |
420 | 463 | 6.367695 | CAGTCAAACGACATACCATGTAAGAA | 59.632 | 38.462 | 0.00 | 0.00 | 45.03 | 2.52 |
421 | 464 | 6.932400 | AGTCAAACGACATACCATGTAAGAAA | 59.068 | 34.615 | 0.00 | 0.00 | 45.03 | 2.52 |
422 | 465 | 7.442969 | AGTCAAACGACATACCATGTAAGAAAA | 59.557 | 33.333 | 0.00 | 0.00 | 45.03 | 2.29 |
423 | 466 | 7.744715 | GTCAAACGACATACCATGTAAGAAAAG | 59.255 | 37.037 | 0.00 | 0.00 | 45.03 | 2.27 |
424 | 467 | 7.658167 | TCAAACGACATACCATGTAAGAAAAGA | 59.342 | 33.333 | 0.00 | 0.00 | 45.03 | 2.52 |
425 | 468 | 7.972832 | AACGACATACCATGTAAGAAAAGAA | 57.027 | 32.000 | 0.00 | 0.00 | 45.03 | 2.52 |
426 | 469 | 7.972832 | ACGACATACCATGTAAGAAAAGAAA | 57.027 | 32.000 | 0.00 | 0.00 | 45.03 | 2.52 |
427 | 470 | 8.385898 | ACGACATACCATGTAAGAAAAGAAAA | 57.614 | 30.769 | 0.00 | 0.00 | 45.03 | 2.29 |
428 | 471 | 8.504005 | ACGACATACCATGTAAGAAAAGAAAAG | 58.496 | 33.333 | 0.00 | 0.00 | 45.03 | 2.27 |
429 | 472 | 7.962918 | CGACATACCATGTAAGAAAAGAAAAGG | 59.037 | 37.037 | 0.00 | 0.00 | 45.03 | 3.11 |
430 | 473 | 8.934023 | ACATACCATGTAAGAAAAGAAAAGGA | 57.066 | 30.769 | 0.00 | 0.00 | 42.78 | 3.36 |
431 | 474 | 9.362151 | ACATACCATGTAAGAAAAGAAAAGGAA | 57.638 | 29.630 | 0.00 | 0.00 | 42.78 | 3.36 |
432 | 475 | 9.846248 | CATACCATGTAAGAAAAGAAAAGGAAG | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
433 | 476 | 9.807921 | ATACCATGTAAGAAAAGAAAAGGAAGA | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
434 | 477 | 8.712228 | ACCATGTAAGAAAAGAAAAGGAAGAT | 57.288 | 30.769 | 0.00 | 0.00 | 0.00 | 2.40 |
435 | 478 | 8.797438 | ACCATGTAAGAAAAGAAAAGGAAGATC | 58.203 | 33.333 | 0.00 | 0.00 | 0.00 | 2.75 |
436 | 479 | 8.796475 | CCATGTAAGAAAAGAAAAGGAAGATCA | 58.204 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
437 | 480 | 9.837525 | CATGTAAGAAAAGAAAAGGAAGATCAG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
438 | 481 | 9.799106 | ATGTAAGAAAAGAAAAGGAAGATCAGA | 57.201 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
439 | 482 | 9.627123 | TGTAAGAAAAGAAAAGGAAGATCAGAA | 57.373 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
471 | 514 | 9.882996 | TTTTTGCACGAATCTCAATATATGATC | 57.117 | 29.630 | 0.00 | 0.00 | 37.44 | 2.92 |
472 | 515 | 7.601073 | TTGCACGAATCTCAATATATGATCC | 57.399 | 36.000 | 0.00 | 0.00 | 37.44 | 3.36 |
473 | 516 | 6.108687 | TGCACGAATCTCAATATATGATCCC | 58.891 | 40.000 | 0.00 | 0.00 | 37.44 | 3.85 |
474 | 517 | 6.108687 | GCACGAATCTCAATATATGATCCCA | 58.891 | 40.000 | 0.00 | 0.00 | 37.44 | 4.37 |
475 | 518 | 6.765036 | GCACGAATCTCAATATATGATCCCAT | 59.235 | 38.462 | 0.00 | 0.00 | 37.44 | 4.00 |
476 | 519 | 7.928167 | GCACGAATCTCAATATATGATCCCATA | 59.072 | 37.037 | 0.00 | 0.00 | 37.44 | 2.74 |
477 | 520 | 9.822185 | CACGAATCTCAATATATGATCCCATAA | 57.178 | 33.333 | 0.00 | 0.00 | 38.62 | 1.90 |
496 | 539 | 6.645415 | CCCATAAATATAACGTGGACTGAGAC | 59.355 | 42.308 | 0.00 | 0.00 | 31.59 | 3.36 |
497 | 540 | 6.362551 | CCATAAATATAACGTGGACTGAGACG | 59.637 | 42.308 | 0.00 | 0.00 | 41.41 | 4.18 |
502 | 545 | 0.595095 | ACGTGGACTGAGACGTAACC | 59.405 | 55.000 | 0.00 | 0.00 | 46.54 | 2.85 |
512 | 555 | 2.726832 | AGACGTAACCAAGTCTCAGC | 57.273 | 50.000 | 0.00 | 0.00 | 43.52 | 4.26 |
514 | 557 | 0.038526 | ACGTAACCAAGTCTCAGCCG | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 5.52 |
516 | 559 | 1.135083 | CGTAACCAAGTCTCAGCCGAT | 60.135 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
518 | 561 | 1.813513 | AACCAAGTCTCAGCCGATTG | 58.186 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
519 | 562 | 0.976641 | ACCAAGTCTCAGCCGATTGA | 59.023 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
529 | 572 | 5.903764 | CTCAGCCGATTGAGAAGATTTAG | 57.096 | 43.478 | 9.68 | 0.00 | 45.95 | 1.85 |
530 | 573 | 4.697514 | TCAGCCGATTGAGAAGATTTAGG | 58.302 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
531 | 574 | 4.405680 | TCAGCCGATTGAGAAGATTTAGGA | 59.594 | 41.667 | 0.00 | 0.00 | 0.00 | 2.94 |
532 | 575 | 5.104941 | TCAGCCGATTGAGAAGATTTAGGAA | 60.105 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
536 | 579 | 5.460419 | CCGATTGAGAAGATTTAGGAAGACG | 59.540 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
538 | 581 | 5.995565 | TTGAGAAGATTTAGGAAGACGGA | 57.004 | 39.130 | 0.00 | 0.00 | 0.00 | 4.69 |
540 | 583 | 6.354794 | TGAGAAGATTTAGGAAGACGGAAA | 57.645 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
541 | 584 | 6.947464 | TGAGAAGATTTAGGAAGACGGAAAT | 58.053 | 36.000 | 0.00 | 0.00 | 0.00 | 2.17 |
568 | 914 | 0.106519 | AGTACATCCTTGCCATGCCC | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
596 | 942 | 4.805719 | CCTTGTTTGAACTTTTGCCTCTTC | 59.194 | 41.667 | 0.00 | 0.00 | 0.00 | 2.87 |
597 | 943 | 5.394553 | CCTTGTTTGAACTTTTGCCTCTTCT | 60.395 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
599 | 945 | 5.650543 | TGTTTGAACTTTTGCCTCTTCTTC | 58.349 | 37.500 | 0.00 | 0.00 | 0.00 | 2.87 |
602 | 948 | 5.757850 | TGAACTTTTGCCTCTTCTTCTTC | 57.242 | 39.130 | 0.00 | 0.00 | 0.00 | 2.87 |
603 | 949 | 5.440610 | TGAACTTTTGCCTCTTCTTCTTCT | 58.559 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
605 | 951 | 6.038714 | TGAACTTTTGCCTCTTCTTCTTCTTC | 59.961 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
607 | 953 | 6.125719 | ACTTTTGCCTCTTCTTCTTCTTCTT | 58.874 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
608 | 954 | 6.262049 | ACTTTTGCCTCTTCTTCTTCTTCTTC | 59.738 | 38.462 | 0.00 | 0.00 | 0.00 | 2.87 |
702 | 1051 | 1.884579 | GTACTCCTATTCCGGCATCGA | 59.115 | 52.381 | 0.00 | 0.00 | 39.00 | 3.59 |
731 | 1080 | 4.225208 | GCAGAGCAGTTAGAAAAGCAAAG | 58.775 | 43.478 | 0.00 | 0.00 | 0.00 | 2.77 |
732 | 1081 | 4.225208 | CAGAGCAGTTAGAAAAGCAAAGC | 58.775 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
733 | 1082 | 3.885297 | AGAGCAGTTAGAAAAGCAAAGCA | 59.115 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
734 | 1083 | 4.339247 | AGAGCAGTTAGAAAAGCAAAGCAA | 59.661 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
735 | 1084 | 5.009854 | AGCAGTTAGAAAAGCAAAGCAAA | 57.990 | 34.783 | 0.00 | 0.00 | 0.00 | 3.68 |
781 | 1130 | 2.028130 | TGCAAACCCAACCACACTAAG | 58.972 | 47.619 | 0.00 | 0.00 | 0.00 | 2.18 |
897 | 1247 | 3.670500 | CATATATGCTGCACTGCGC | 57.330 | 52.632 | 3.57 | 0.00 | 42.89 | 6.09 |
910 | 1260 | 0.972983 | ACTGCGCCATGGTCTCTACT | 60.973 | 55.000 | 14.67 | 0.00 | 0.00 | 2.57 |
932 | 1282 | 4.329392 | TCAGCAAGCAATCTTCATCTTCA | 58.671 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
942 | 1292 | 7.776030 | AGCAATCTTCATCTTCATCTCAATCTT | 59.224 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
946 | 1296 | 7.627311 | TCTTCATCTTCATCTCAATCTTCCAA | 58.373 | 34.615 | 0.00 | 0.00 | 0.00 | 3.53 |
988 | 1338 | 2.279385 | GAGCAGAGCAGCTAGCCG | 60.279 | 66.667 | 12.13 | 1.20 | 46.75 | 5.52 |
998 | 1348 | 4.537433 | GCTAGCCGTCCCAGCCAG | 62.537 | 72.222 | 2.29 | 0.00 | 0.00 | 4.85 |
1056 | 1406 | 4.947147 | GACACCACCGGCAAGGCA | 62.947 | 66.667 | 0.00 | 0.00 | 46.52 | 4.75 |
1286 | 1639 | 1.735386 | CTCTCCGTCTTCACCGAGTA | 58.265 | 55.000 | 0.00 | 0.00 | 31.72 | 2.59 |
1299 | 1652 | 0.458025 | CCGAGTACTTCCAGTTCCGC | 60.458 | 60.000 | 0.00 | 0.00 | 0.00 | 5.54 |
1395 | 1748 | 1.690219 | CCCTCCCCTTCTCCATCGTG | 61.690 | 65.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1468 | 1821 | 3.434319 | CGGTGATGGTGGTGCTGC | 61.434 | 66.667 | 0.00 | 0.00 | 0.00 | 5.25 |
1739 | 2092 | 3.334583 | TCGAATCCTTTCTGGTCTTGG | 57.665 | 47.619 | 0.00 | 0.00 | 37.07 | 3.61 |
1757 | 2110 | 5.050023 | GTCTTGGTTGTGCTTTCTCTACTTC | 60.050 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1772 | 2125 | 9.784531 | TTTCTCTACTTCACTTTGATTTGATCT | 57.215 | 29.630 | 0.00 | 0.00 | 0.00 | 2.75 |
1791 | 2144 | 3.414269 | TCTTGCTCATGAGTGAATTGCA | 58.586 | 40.909 | 23.38 | 11.69 | 33.01 | 4.08 |
1810 | 2167 | 4.226384 | TGCACCATCTCATATACTCCTGT | 58.774 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
1811 | 2168 | 4.039609 | TGCACCATCTCATATACTCCTGTG | 59.960 | 45.833 | 0.00 | 0.00 | 0.00 | 3.66 |
1813 | 2170 | 5.453903 | GCACCATCTCATATACTCCTGTGTT | 60.454 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1857 | 2224 | 4.688413 | TCAATCAATTGTTCGTCGATCACA | 59.312 | 37.500 | 5.13 | 0.54 | 38.84 | 3.58 |
1918 | 2285 | 5.782893 | TTTGAACATTTCCGATTTCCAGT | 57.217 | 34.783 | 0.00 | 0.00 | 0.00 | 4.00 |
1991 | 2362 | 8.951243 | TCTCATATATACTCATGTACTCAGCAC | 58.049 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
2047 | 2418 | 2.159179 | TTCCGATCTGTCTCCATCCA | 57.841 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2052 | 2423 | 3.388308 | CGATCTGTCTCCATCCAATCAC | 58.612 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
2059 | 2430 | 0.928505 | TCCATCCAATCACCTGGCAT | 59.071 | 50.000 | 0.00 | 0.00 | 36.32 | 4.40 |
2065 | 2436 | 3.355378 | TCCAATCACCTGGCATAACAAG | 58.645 | 45.455 | 0.00 | 0.00 | 36.32 | 3.16 |
2089 | 2472 | 6.019559 | AGCGAAAAAGAAAGAAAGAAATGCAC | 60.020 | 34.615 | 0.00 | 0.00 | 0.00 | 4.57 |
2107 | 2490 | 1.874231 | CACAGCAGAGATGCATGGATC | 59.126 | 52.381 | 18.73 | 18.73 | 37.25 | 3.36 |
2108 | 2491 | 1.489230 | ACAGCAGAGATGCATGGATCA | 59.511 | 47.619 | 26.58 | 1.80 | 37.25 | 2.92 |
2109 | 2492 | 2.106684 | ACAGCAGAGATGCATGGATCAT | 59.893 | 45.455 | 26.58 | 13.52 | 37.25 | 2.45 |
2110 | 2493 | 2.485814 | CAGCAGAGATGCATGGATCATG | 59.514 | 50.000 | 26.58 | 23.37 | 43.91 | 3.07 |
2131 | 2514 | 2.689471 | GCATGAATGGTGATGGCAGTAA | 59.311 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2132 | 2515 | 3.319972 | GCATGAATGGTGATGGCAGTAAT | 59.680 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
2133 | 2516 | 4.794981 | GCATGAATGGTGATGGCAGTAATG | 60.795 | 45.833 | 0.00 | 0.00 | 0.00 | 1.90 |
2134 | 2517 | 3.966979 | TGAATGGTGATGGCAGTAATGT | 58.033 | 40.909 | 0.00 | 0.00 | 0.00 | 2.71 |
2135 | 2518 | 5.109500 | TGAATGGTGATGGCAGTAATGTA | 57.891 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
2136 | 2519 | 5.693961 | TGAATGGTGATGGCAGTAATGTAT | 58.306 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
2137 | 2520 | 6.836242 | TGAATGGTGATGGCAGTAATGTATA | 58.164 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2138 | 2521 | 6.936335 | TGAATGGTGATGGCAGTAATGTATAG | 59.064 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
2139 | 2522 | 6.686484 | ATGGTGATGGCAGTAATGTATAGA | 57.314 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
2179 | 2562 | 1.153353 | TTTGCTTGCTGCGGTAGTAC | 58.847 | 50.000 | 0.00 | 0.00 | 46.63 | 2.73 |
2215 | 2598 | 4.090588 | TCGGGGTCCATGGCGAAC | 62.091 | 66.667 | 6.96 | 0.00 | 0.00 | 3.95 |
2260 | 2643 | 3.905678 | CTGGGCTCGGCGTAGAGG | 61.906 | 72.222 | 6.85 | 0.00 | 38.63 | 3.69 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
18 | 19 | 8.382875 | CAGTTCATTCAAAAGAAAACAAGTTCC | 58.617 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
37 | 39 | 1.878775 | GCCTTGCGCTTCAGTTCAT | 59.121 | 52.632 | 9.73 | 0.00 | 0.00 | 2.57 |
68 | 70 | 4.436242 | AGTGCTTATTTTCTCGAGTCGA | 57.564 | 40.909 | 15.64 | 15.64 | 0.00 | 4.20 |
69 | 71 | 4.859798 | AGAAGTGCTTATTTTCTCGAGTCG | 59.140 | 41.667 | 13.13 | 6.09 | 0.00 | 4.18 |
70 | 72 | 5.635700 | ACAGAAGTGCTTATTTTCTCGAGTC | 59.364 | 40.000 | 13.13 | 0.00 | 0.00 | 3.36 |
71 | 73 | 5.406780 | CACAGAAGTGCTTATTTTCTCGAGT | 59.593 | 40.000 | 13.13 | 0.00 | 39.21 | 4.18 |
72 | 74 | 5.852005 | CACAGAAGTGCTTATTTTCTCGAG | 58.148 | 41.667 | 5.93 | 5.93 | 39.21 | 4.04 |
73 | 75 | 5.845985 | CACAGAAGTGCTTATTTTCTCGA | 57.154 | 39.130 | 0.00 | 0.00 | 39.21 | 4.04 |
117 | 119 | 0.976073 | GTTCGGATCCCCTCCACTCA | 60.976 | 60.000 | 6.06 | 0.00 | 45.24 | 3.41 |
118 | 120 | 0.976073 | TGTTCGGATCCCCTCCACTC | 60.976 | 60.000 | 6.06 | 0.00 | 45.24 | 3.51 |
119 | 121 | 1.080354 | TGTTCGGATCCCCTCCACT | 59.920 | 57.895 | 6.06 | 0.00 | 45.24 | 4.00 |
120 | 122 | 1.221021 | GTGTTCGGATCCCCTCCAC | 59.779 | 63.158 | 6.06 | 4.53 | 45.24 | 4.02 |
121 | 123 | 2.355986 | CGTGTTCGGATCCCCTCCA | 61.356 | 63.158 | 6.06 | 0.00 | 45.24 | 3.86 |
122 | 124 | 1.896122 | AACGTGTTCGGATCCCCTCC | 61.896 | 60.000 | 6.06 | 0.00 | 41.85 | 4.30 |
123 | 125 | 0.819582 | TAACGTGTTCGGATCCCCTC | 59.180 | 55.000 | 6.06 | 0.00 | 41.85 | 4.30 |
124 | 126 | 0.822164 | CTAACGTGTTCGGATCCCCT | 59.178 | 55.000 | 6.06 | 0.00 | 41.85 | 4.79 |
125 | 127 | 0.533951 | ACTAACGTGTTCGGATCCCC | 59.466 | 55.000 | 6.06 | 0.00 | 41.85 | 4.81 |
126 | 128 | 2.375173 | AACTAACGTGTTCGGATCCC | 57.625 | 50.000 | 6.06 | 0.00 | 41.85 | 3.85 |
127 | 129 | 4.488879 | AGTAAACTAACGTGTTCGGATCC | 58.511 | 43.478 | 0.00 | 0.00 | 41.85 | 3.36 |
128 | 130 | 4.261581 | CGAGTAAACTAACGTGTTCGGATC | 59.738 | 45.833 | 0.00 | 0.00 | 41.85 | 3.36 |
129 | 131 | 4.161333 | CGAGTAAACTAACGTGTTCGGAT | 58.839 | 43.478 | 0.00 | 0.00 | 41.85 | 4.18 |
130 | 132 | 3.554524 | CGAGTAAACTAACGTGTTCGGA | 58.445 | 45.455 | 0.00 | 0.00 | 41.85 | 4.55 |
131 | 133 | 2.658325 | CCGAGTAAACTAACGTGTTCGG | 59.342 | 50.000 | 0.00 | 0.00 | 41.85 | 4.30 |
132 | 134 | 3.300009 | ACCGAGTAAACTAACGTGTTCG | 58.700 | 45.455 | 0.00 | 0.00 | 43.34 | 3.95 |
133 | 135 | 4.504097 | ACAACCGAGTAAACTAACGTGTTC | 59.496 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
134 | 136 | 4.268405 | CACAACCGAGTAAACTAACGTGTT | 59.732 | 41.667 | 0.00 | 0.00 | 0.00 | 3.32 |
135 | 137 | 3.798337 | CACAACCGAGTAAACTAACGTGT | 59.202 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
136 | 138 | 3.182972 | CCACAACCGAGTAAACTAACGTG | 59.817 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
137 | 139 | 3.181476 | ACCACAACCGAGTAAACTAACGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.99 |
138 | 140 | 3.383761 | ACCACAACCGAGTAAACTAACG | 58.616 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
139 | 141 | 5.175673 | GTGTACCACAACCGAGTAAACTAAC | 59.824 | 44.000 | 0.00 | 0.00 | 34.08 | 2.34 |
140 | 142 | 5.288804 | GTGTACCACAACCGAGTAAACTAA | 58.711 | 41.667 | 0.00 | 0.00 | 34.08 | 2.24 |
141 | 143 | 4.261994 | GGTGTACCACAACCGAGTAAACTA | 60.262 | 45.833 | 0.00 | 0.00 | 35.86 | 2.24 |
157 | 159 | 1.080298 | CACGAACGGAGGGTGTACC | 60.080 | 63.158 | 0.00 | 0.00 | 40.67 | 3.34 |
162 | 164 | 2.845363 | AATAAACACGAACGGAGGGT | 57.155 | 45.000 | 0.00 | 0.00 | 0.00 | 4.34 |
169 | 171 | 6.421405 | ACACGGAGTAAAAATAAACACGAAC | 58.579 | 36.000 | 0.00 | 0.00 | 41.61 | 3.95 |
170 | 172 | 6.601741 | ACACGGAGTAAAAATAAACACGAA | 57.398 | 33.333 | 0.00 | 0.00 | 41.61 | 3.85 |
171 | 173 | 7.651304 | TCTTACACGGAGTAAAAATAAACACGA | 59.349 | 33.333 | 0.00 | 0.00 | 41.61 | 4.35 |
172 | 174 | 7.786114 | TCTTACACGGAGTAAAAATAAACACG | 58.214 | 34.615 | 4.62 | 0.00 | 41.61 | 4.49 |
285 | 320 | 4.876107 | AGGTCGACATTCACAATATGGAAC | 59.124 | 41.667 | 18.91 | 0.00 | 0.00 | 3.62 |
288 | 323 | 5.818136 | AAAGGTCGACATTCACAATATGG | 57.182 | 39.130 | 16.69 | 0.00 | 0.00 | 2.74 |
369 | 412 | 7.621796 | AGACCTAGTCACACCCTTATTTTTAG | 58.378 | 38.462 | 0.00 | 0.00 | 34.60 | 1.85 |
370 | 413 | 7.236019 | TGAGACCTAGTCACACCCTTATTTTTA | 59.764 | 37.037 | 0.00 | 0.00 | 34.60 | 1.52 |
371 | 414 | 6.043938 | TGAGACCTAGTCACACCCTTATTTTT | 59.956 | 38.462 | 0.00 | 0.00 | 34.60 | 1.94 |
373 | 416 | 5.091552 | TGAGACCTAGTCACACCCTTATTT | 58.908 | 41.667 | 0.00 | 0.00 | 34.60 | 1.40 |
376 | 419 | 3.075582 | ACTGAGACCTAGTCACACCCTTA | 59.924 | 47.826 | 0.00 | 0.00 | 34.60 | 2.69 |
377 | 420 | 2.158295 | ACTGAGACCTAGTCACACCCTT | 60.158 | 50.000 | 0.00 | 0.00 | 34.60 | 3.95 |
378 | 421 | 1.429687 | ACTGAGACCTAGTCACACCCT | 59.570 | 52.381 | 0.00 | 0.00 | 34.60 | 4.34 |
379 | 422 | 1.819903 | GACTGAGACCTAGTCACACCC | 59.180 | 57.143 | 0.00 | 0.00 | 43.12 | 4.61 |
380 | 423 | 2.515854 | TGACTGAGACCTAGTCACACC | 58.484 | 52.381 | 3.89 | 0.00 | 46.92 | 4.16 |
385 | 428 | 3.252701 | TGTCGTTTGACTGAGACCTAGTC | 59.747 | 47.826 | 0.00 | 0.00 | 45.70 | 2.59 |
386 | 429 | 3.220110 | TGTCGTTTGACTGAGACCTAGT | 58.780 | 45.455 | 0.00 | 0.00 | 45.70 | 2.57 |
387 | 430 | 3.917329 | TGTCGTTTGACTGAGACCTAG | 57.083 | 47.619 | 0.00 | 0.00 | 45.70 | 3.02 |
388 | 431 | 4.157289 | GGTATGTCGTTTGACTGAGACCTA | 59.843 | 45.833 | 0.00 | 0.00 | 45.70 | 3.08 |
389 | 432 | 3.056749 | GGTATGTCGTTTGACTGAGACCT | 60.057 | 47.826 | 0.00 | 0.00 | 45.70 | 3.85 |
390 | 433 | 3.251571 | GGTATGTCGTTTGACTGAGACC | 58.748 | 50.000 | 0.00 | 0.00 | 45.70 | 3.85 |
391 | 434 | 3.909430 | TGGTATGTCGTTTGACTGAGAC | 58.091 | 45.455 | 0.00 | 0.00 | 45.70 | 3.36 |
392 | 435 | 4.021456 | ACATGGTATGTCGTTTGACTGAGA | 60.021 | 41.667 | 0.00 | 0.00 | 45.70 | 3.27 |
393 | 436 | 4.245660 | ACATGGTATGTCGTTTGACTGAG | 58.754 | 43.478 | 0.00 | 0.00 | 45.70 | 3.35 |
394 | 437 | 4.265904 | ACATGGTATGTCGTTTGACTGA | 57.734 | 40.909 | 0.00 | 0.00 | 45.70 | 3.41 |
395 | 438 | 5.867174 | TCTTACATGGTATGTCGTTTGACTG | 59.133 | 40.000 | 0.00 | 0.00 | 45.70 | 3.51 |
396 | 439 | 6.032956 | TCTTACATGGTATGTCGTTTGACT | 57.967 | 37.500 | 0.00 | 0.00 | 45.70 | 3.41 |
397 | 440 | 6.715344 | TTCTTACATGGTATGTCGTTTGAC | 57.285 | 37.500 | 0.00 | 0.00 | 43.67 | 3.18 |
398 | 441 | 7.658167 | TCTTTTCTTACATGGTATGTCGTTTGA | 59.342 | 33.333 | 0.00 | 0.00 | 43.67 | 2.69 |
399 | 442 | 7.802738 | TCTTTTCTTACATGGTATGTCGTTTG | 58.197 | 34.615 | 0.00 | 0.00 | 43.67 | 2.93 |
400 | 443 | 7.972832 | TCTTTTCTTACATGGTATGTCGTTT | 57.027 | 32.000 | 0.00 | 0.00 | 43.67 | 3.60 |
401 | 444 | 7.972832 | TTCTTTTCTTACATGGTATGTCGTT | 57.027 | 32.000 | 0.00 | 0.00 | 43.67 | 3.85 |
402 | 445 | 7.972832 | TTTCTTTTCTTACATGGTATGTCGT | 57.027 | 32.000 | 0.00 | 0.00 | 43.67 | 4.34 |
403 | 446 | 7.962918 | CCTTTTCTTTTCTTACATGGTATGTCG | 59.037 | 37.037 | 0.00 | 0.00 | 43.67 | 4.35 |
404 | 447 | 9.010029 | TCCTTTTCTTTTCTTACATGGTATGTC | 57.990 | 33.333 | 0.00 | 0.00 | 43.67 | 3.06 |
405 | 448 | 8.934023 | TCCTTTTCTTTTCTTACATGGTATGT | 57.066 | 30.769 | 0.00 | 0.00 | 46.92 | 2.29 |
406 | 449 | 9.846248 | CTTCCTTTTCTTTTCTTACATGGTATG | 57.154 | 33.333 | 0.00 | 0.00 | 0.00 | 2.39 |
407 | 450 | 9.807921 | TCTTCCTTTTCTTTTCTTACATGGTAT | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
408 | 451 | 9.807921 | ATCTTCCTTTTCTTTTCTTACATGGTA | 57.192 | 29.630 | 0.00 | 0.00 | 0.00 | 3.25 |
409 | 452 | 8.712228 | ATCTTCCTTTTCTTTTCTTACATGGT | 57.288 | 30.769 | 0.00 | 0.00 | 0.00 | 3.55 |
410 | 453 | 8.796475 | TGATCTTCCTTTTCTTTTCTTACATGG | 58.204 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
411 | 454 | 9.837525 | CTGATCTTCCTTTTCTTTTCTTACATG | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 3.21 |
412 | 455 | 9.799106 | TCTGATCTTCCTTTTCTTTTCTTACAT | 57.201 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
413 | 456 | 9.627123 | TTCTGATCTTCCTTTTCTTTTCTTACA | 57.373 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
445 | 488 | 9.882996 | GATCATATATTGAGATTCGTGCAAAAA | 57.117 | 29.630 | 0.00 | 0.00 | 37.89 | 1.94 |
446 | 489 | 8.506437 | GGATCATATATTGAGATTCGTGCAAAA | 58.494 | 33.333 | 0.00 | 0.00 | 37.89 | 2.44 |
447 | 490 | 7.119699 | GGGATCATATATTGAGATTCGTGCAAA | 59.880 | 37.037 | 0.00 | 0.00 | 37.89 | 3.68 |
448 | 491 | 6.595326 | GGGATCATATATTGAGATTCGTGCAA | 59.405 | 38.462 | 0.00 | 0.00 | 37.89 | 4.08 |
449 | 492 | 6.108687 | GGGATCATATATTGAGATTCGTGCA | 58.891 | 40.000 | 0.00 | 0.00 | 37.89 | 4.57 |
450 | 493 | 6.108687 | TGGGATCATATATTGAGATTCGTGC | 58.891 | 40.000 | 0.00 | 0.00 | 37.89 | 5.34 |
451 | 494 | 9.822185 | TTATGGGATCATATATTGAGATTCGTG | 57.178 | 33.333 | 0.00 | 0.00 | 37.89 | 4.35 |
464 | 507 | 9.832445 | GTCCACGTTATATTTATGGGATCATAT | 57.168 | 33.333 | 0.00 | 0.00 | 35.94 | 1.78 |
465 | 508 | 9.042450 | AGTCCACGTTATATTTATGGGATCATA | 57.958 | 33.333 | 0.00 | 0.00 | 34.96 | 2.15 |
466 | 509 | 7.824289 | CAGTCCACGTTATATTTATGGGATCAT | 59.176 | 37.037 | 0.00 | 0.00 | 37.40 | 2.45 |
467 | 510 | 7.015779 | TCAGTCCACGTTATATTTATGGGATCA | 59.984 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
468 | 511 | 7.383687 | TCAGTCCACGTTATATTTATGGGATC | 58.616 | 38.462 | 0.00 | 0.00 | 0.00 | 3.36 |
469 | 512 | 7.234782 | TCTCAGTCCACGTTATATTTATGGGAT | 59.765 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
470 | 513 | 6.551975 | TCTCAGTCCACGTTATATTTATGGGA | 59.448 | 38.462 | 0.00 | 0.00 | 0.00 | 4.37 |
471 | 514 | 6.645415 | GTCTCAGTCCACGTTATATTTATGGG | 59.355 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
472 | 515 | 6.362551 | CGTCTCAGTCCACGTTATATTTATGG | 59.637 | 42.308 | 0.00 | 0.00 | 0.00 | 2.74 |
473 | 516 | 6.916387 | ACGTCTCAGTCCACGTTATATTTATG | 59.084 | 38.462 | 0.00 | 0.00 | 46.93 | 1.90 |
474 | 517 | 7.035840 | ACGTCTCAGTCCACGTTATATTTAT | 57.964 | 36.000 | 0.00 | 0.00 | 46.93 | 1.40 |
475 | 518 | 6.441093 | ACGTCTCAGTCCACGTTATATTTA | 57.559 | 37.500 | 0.00 | 0.00 | 46.93 | 1.40 |
476 | 519 | 5.320549 | ACGTCTCAGTCCACGTTATATTT | 57.679 | 39.130 | 0.00 | 0.00 | 46.93 | 1.40 |
477 | 520 | 4.978083 | ACGTCTCAGTCCACGTTATATT | 57.022 | 40.909 | 0.00 | 0.00 | 46.93 | 1.28 |
478 | 521 | 5.220931 | GGTTACGTCTCAGTCCACGTTATAT | 60.221 | 44.000 | 2.05 | 0.00 | 46.93 | 0.86 |
479 | 522 | 4.094887 | GGTTACGTCTCAGTCCACGTTATA | 59.905 | 45.833 | 2.05 | 0.00 | 46.93 | 0.98 |
480 | 523 | 3.119708 | GGTTACGTCTCAGTCCACGTTAT | 60.120 | 47.826 | 2.05 | 0.00 | 46.93 | 1.89 |
481 | 524 | 2.226437 | GGTTACGTCTCAGTCCACGTTA | 59.774 | 50.000 | 2.05 | 0.00 | 46.93 | 3.18 |
482 | 525 | 1.000938 | GGTTACGTCTCAGTCCACGTT | 60.001 | 52.381 | 2.05 | 0.00 | 46.93 | 3.99 |
484 | 527 | 0.594602 | TGGTTACGTCTCAGTCCACG | 59.405 | 55.000 | 0.00 | 0.00 | 41.90 | 4.94 |
487 | 530 | 2.557490 | AGACTTGGTTACGTCTCAGTCC | 59.443 | 50.000 | 0.00 | 0.00 | 35.72 | 3.85 |
496 | 539 | 0.242825 | TCGGCTGAGACTTGGTTACG | 59.757 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
497 | 540 | 2.673368 | CAATCGGCTGAGACTTGGTTAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 2.50 |
502 | 545 | 2.662006 | TCTCAATCGGCTGAGACTTG | 57.338 | 50.000 | 11.82 | 0.84 | 45.45 | 3.16 |
511 | 554 | 5.235401 | GTCTTCCTAAATCTTCTCAATCGGC | 59.765 | 44.000 | 0.00 | 0.00 | 0.00 | 5.54 |
512 | 555 | 5.460419 | CGTCTTCCTAAATCTTCTCAATCGG | 59.540 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
514 | 557 | 6.574350 | TCCGTCTTCCTAAATCTTCTCAATC | 58.426 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
516 | 559 | 5.995565 | TCCGTCTTCCTAAATCTTCTCAA | 57.004 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
518 | 561 | 6.199342 | CGATTTCCGTCTTCCTAAATCTTCTC | 59.801 | 42.308 | 0.00 | 0.00 | 36.59 | 2.87 |
519 | 562 | 6.043411 | CGATTTCCGTCTTCCTAAATCTTCT | 58.957 | 40.000 | 0.00 | 0.00 | 36.59 | 2.85 |
536 | 579 | 3.896272 | AGGATGTACTCCCTACGATTTCC | 59.104 | 47.826 | 5.05 | 0.00 | 46.27 | 3.13 |
538 | 581 | 4.443034 | GCAAGGATGTACTCCCTACGATTT | 60.443 | 45.833 | 6.98 | 0.00 | 46.27 | 2.17 |
540 | 583 | 2.628657 | GCAAGGATGTACTCCCTACGAT | 59.371 | 50.000 | 6.98 | 0.00 | 46.27 | 3.73 |
541 | 584 | 2.029623 | GCAAGGATGTACTCCCTACGA | 58.970 | 52.381 | 6.98 | 0.00 | 46.27 | 3.43 |
544 | 890 | 2.561209 | TGGCAAGGATGTACTCCCTA | 57.439 | 50.000 | 6.98 | 0.00 | 46.27 | 3.53 |
568 | 914 | 2.577449 | AAAGTTCAAACAAGGTGGCG | 57.423 | 45.000 | 0.00 | 0.00 | 0.00 | 5.69 |
624 | 970 | 2.623889 | AGCGTACAGATATCCTCACACC | 59.376 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
702 | 1051 | 6.579666 | TTTTCTAACTGCTCTGCATTTCAT | 57.420 | 33.333 | 0.00 | 0.00 | 38.13 | 2.57 |
731 | 1080 | 3.652274 | TGCTTAGTTTGCTGGAATTTGC | 58.348 | 40.909 | 0.00 | 0.00 | 0.00 | 3.68 |
732 | 1081 | 4.448732 | GGTTGCTTAGTTTGCTGGAATTTG | 59.551 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
733 | 1082 | 4.100808 | TGGTTGCTTAGTTTGCTGGAATTT | 59.899 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
734 | 1083 | 3.640967 | TGGTTGCTTAGTTTGCTGGAATT | 59.359 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
735 | 1084 | 3.005791 | GTGGTTGCTTAGTTTGCTGGAAT | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
781 | 1130 | 4.081420 | TGAAGAAGTTGAGAGGGATGTAGC | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
897 | 1247 | 2.741228 | GCTTGCTGAGTAGAGACCATGG | 60.741 | 54.545 | 11.19 | 11.19 | 0.00 | 3.66 |
910 | 1260 | 4.329392 | TGAAGATGAAGATTGCTTGCTGA | 58.671 | 39.130 | 0.00 | 0.00 | 33.61 | 4.26 |
932 | 1282 | 4.461781 | CCTGCTTGTTTGGAAGATTGAGAT | 59.538 | 41.667 | 0.00 | 0.00 | 0.00 | 2.75 |
942 | 1292 | 2.441750 | AGGTACTTCCTGCTTGTTTGGA | 59.558 | 45.455 | 0.00 | 0.00 | 46.19 | 3.53 |
959 | 1309 | 1.610379 | TCTGCTCAGCTGCCAGGTA | 60.610 | 57.895 | 24.64 | 11.04 | 0.00 | 3.08 |
964 | 1314 | 2.820479 | CTGCTCTGCTCAGCTGCC | 60.820 | 66.667 | 9.47 | 2.80 | 40.39 | 4.85 |
998 | 1348 | 4.424566 | CGTTGGTGCTGGCCATGC | 62.425 | 66.667 | 5.51 | 13.30 | 38.48 | 4.06 |
1004 | 1354 | 4.641645 | TGGCCTCGTTGGTGCTGG | 62.642 | 66.667 | 3.32 | 0.00 | 38.35 | 4.85 |
1105 | 1455 | 4.760840 | CTTGCGCTGCTGCTGCTG | 62.761 | 66.667 | 25.43 | 19.76 | 40.48 | 4.41 |
1107 | 1457 | 4.755614 | GACTTGCGCTGCTGCTGC | 62.756 | 66.667 | 19.94 | 19.94 | 38.50 | 5.25 |
1108 | 1458 | 4.099170 | GGACTTGCGCTGCTGCTG | 62.099 | 66.667 | 9.73 | 8.34 | 36.97 | 4.41 |
1299 | 1652 | 2.049433 | AAGTCGTCGAACCTGGCG | 60.049 | 61.111 | 0.00 | 0.00 | 0.00 | 5.69 |
1727 | 2080 | 2.435372 | AGCACAACCAAGACCAGAAA | 57.565 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1739 | 2092 | 5.993106 | AAGTGAAGTAGAGAAAGCACAAC | 57.007 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
1757 | 2110 | 6.617879 | TCATGAGCAAGATCAAATCAAAGTG | 58.382 | 36.000 | 0.00 | 0.00 | 31.76 | 3.16 |
1772 | 2125 | 2.229543 | GGTGCAATTCACTCATGAGCAA | 59.770 | 45.455 | 22.83 | 15.50 | 44.98 | 3.91 |
1791 | 2144 | 6.613271 | AGAAACACAGGAGTATATGAGATGGT | 59.387 | 38.462 | 0.00 | 0.00 | 0.00 | 3.55 |
1810 | 2167 | 4.448210 | GAACACCTTACACCAGAGAAACA | 58.552 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
1811 | 2168 | 3.493503 | CGAACACCTTACACCAGAGAAAC | 59.506 | 47.826 | 0.00 | 0.00 | 0.00 | 2.78 |
1813 | 2170 | 2.696707 | ACGAACACCTTACACCAGAGAA | 59.303 | 45.455 | 0.00 | 0.00 | 0.00 | 2.87 |
1887 | 2254 | 9.439500 | AAATCGGAAATGTTCAAATTGATCAAT | 57.561 | 25.926 | 15.36 | 15.36 | 30.83 | 2.57 |
1888 | 2255 | 8.830201 | AAATCGGAAATGTTCAAATTGATCAA | 57.170 | 26.923 | 11.26 | 11.26 | 30.83 | 2.57 |
1889 | 2256 | 7.545265 | GGAAATCGGAAATGTTCAAATTGATCA | 59.455 | 33.333 | 8.92 | 8.92 | 31.50 | 2.92 |
1890 | 2257 | 7.545265 | TGGAAATCGGAAATGTTCAAATTGATC | 59.455 | 33.333 | 0.00 | 0.00 | 0.00 | 2.92 |
1907 | 2274 | 1.243342 | TGCTTGGCACTGGAAATCGG | 61.243 | 55.000 | 0.00 | 0.00 | 31.71 | 4.18 |
1918 | 2285 | 2.346766 | TCTCTCTTGTTTGCTTGGCA | 57.653 | 45.000 | 0.00 | 0.00 | 36.47 | 4.92 |
1991 | 2362 | 3.061295 | CGATACACTTAACACTGCTGCAG | 59.939 | 47.826 | 27.02 | 27.02 | 37.52 | 4.41 |
2047 | 2418 | 1.745087 | CGCTTGTTATGCCAGGTGATT | 59.255 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
2052 | 2423 | 3.057596 | TCTTTTTCGCTTGTTATGCCAGG | 60.058 | 43.478 | 0.00 | 0.00 | 0.00 | 4.45 |
2059 | 2430 | 8.973835 | TTTCTTTCTTTCTTTTTCGCTTGTTA | 57.026 | 26.923 | 0.00 | 0.00 | 0.00 | 2.41 |
2065 | 2436 | 6.122782 | GTGCATTTCTTTCTTTCTTTTTCGC | 58.877 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
2107 | 2490 | 1.410882 | TGCCATCACCATTCATGCATG | 59.589 | 47.619 | 21.07 | 21.07 | 0.00 | 4.06 |
2108 | 2491 | 1.686587 | CTGCCATCACCATTCATGCAT | 59.313 | 47.619 | 0.00 | 0.00 | 0.00 | 3.96 |
2109 | 2492 | 1.107945 | CTGCCATCACCATTCATGCA | 58.892 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2110 | 2493 | 1.108776 | ACTGCCATCACCATTCATGC | 58.891 | 50.000 | 0.00 | 0.00 | 0.00 | 4.06 |
2111 | 2494 | 4.340097 | ACATTACTGCCATCACCATTCATG | 59.660 | 41.667 | 0.00 | 0.00 | 0.00 | 3.07 |
2112 | 2495 | 4.539726 | ACATTACTGCCATCACCATTCAT | 58.460 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2113 | 2496 | 3.966979 | ACATTACTGCCATCACCATTCA | 58.033 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
2119 | 2502 | 9.875691 | TGATATTCTATACATTACTGCCATCAC | 57.124 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
2131 | 2514 | 9.486497 | CAGAAGCAACAGTGATATTCTATACAT | 57.514 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
2132 | 2515 | 7.928167 | CCAGAAGCAACAGTGATATTCTATACA | 59.072 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
2133 | 2516 | 7.928706 | ACCAGAAGCAACAGTGATATTCTATAC | 59.071 | 37.037 | 0.00 | 0.00 | 0.00 | 1.47 |
2134 | 2517 | 8.023021 | ACCAGAAGCAACAGTGATATTCTATA | 57.977 | 34.615 | 0.00 | 0.00 | 0.00 | 1.31 |
2135 | 2518 | 6.893583 | ACCAGAAGCAACAGTGATATTCTAT | 58.106 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2136 | 2519 | 6.299805 | ACCAGAAGCAACAGTGATATTCTA | 57.700 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2137 | 2520 | 5.171339 | ACCAGAAGCAACAGTGATATTCT | 57.829 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2138 | 2521 | 5.886960 | AACCAGAAGCAACAGTGATATTC | 57.113 | 39.130 | 0.00 | 0.00 | 0.00 | 1.75 |
2139 | 2522 | 6.449698 | CAAAACCAGAAGCAACAGTGATATT | 58.550 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2260 | 2643 | 3.849953 | GGCGTCGGCAACATCGTC | 61.850 | 66.667 | 14.73 | 0.00 | 42.47 | 4.20 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.