Multiple sequence alignment - TraesCS7A01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G327500 chr7A 100.000 3253 0 0 1 3253 475964560 475961308 0.000000e+00 6008.0
1 TraesCS7A01G327500 chr7A 86.885 61 6 2 2278 2337 147081687 147081628 2.090000e-07 67.6
2 TraesCS7A01G327500 chr7D 92.867 2285 84 29 8 2260 414088896 414086659 0.000000e+00 3243.0
3 TraesCS7A01G327500 chr7D 93.002 443 26 4 2307 2747 414086689 414086250 2.740000e-180 641.0
4 TraesCS7A01G327500 chr7D 85.714 154 9 8 3102 3253 414086064 414085922 2.020000e-32 150.0
5 TraesCS7A01G327500 chr7D 86.066 122 10 4 2863 2979 414086238 414086119 1.230000e-24 124.0
6 TraesCS7A01G327500 chr7B 93.234 2010 78 20 270 2250 428484823 428482843 0.000000e+00 2905.0
7 TraesCS7A01G327500 chr7B 92.683 451 21 5 2307 2747 428482859 428482411 9.840000e-180 640.0
8 TraesCS7A01G327500 chr7B 88.571 210 13 6 1 209 428485044 428484845 9.020000e-61 244.0
9 TraesCS7A01G327500 chr7B 96.774 62 2 0 3192 3253 428482219 428482158 1.600000e-18 104.0
10 TraesCS7A01G327500 chr7B 87.805 82 10 0 3038 3119 625725259 625725340 2.670000e-16 97.1
11 TraesCS7A01G327500 chr7B 87.500 80 7 2 3053 3130 697522133 697522055 4.470000e-14 89.8
12 TraesCS7A01G327500 chr7B 82.075 106 9 4 2863 2958 428482399 428482294 7.480000e-12 82.4
13 TraesCS7A01G327500 chr7B 100.000 28 0 0 208 235 428484854 428484827 6.000000e-03 52.8
14 TraesCS7A01G327500 chr2B 85.437 206 27 1 1646 1848 785271223 785271428 9.140000e-51 211.0
15 TraesCS7A01G327500 chr2B 82.791 215 25 7 1646 1848 785278580 785278794 7.170000e-42 182.0
16 TraesCS7A01G327500 chr2B 93.182 88 6 0 2952 3039 775375701 775375788 2.630000e-26 130.0
17 TraesCS7A01G327500 chr2B 97.222 36 1 0 2278 2313 43674627 43674662 9.750000e-06 62.1
18 TraesCS7A01G327500 chr3A 98.131 107 2 0 2748 2854 151317956 151318062 1.540000e-43 187.0
19 TraesCS7A01G327500 chr3A 93.333 120 8 0 2744 2863 235837228 235837109 9.270000e-41 178.0
20 TraesCS7A01G327500 chr3A 88.112 143 12 4 2740 2881 79190604 79190742 7.220000e-37 165.0
21 TraesCS7A01G327500 chr3A 87.273 55 3 3 2278 2332 107736835 107736885 3.510000e-05 60.2
22 TraesCS7A01G327500 chr6A 95.690 116 4 1 2748 2862 74530562 74530447 5.540000e-43 185.0
23 TraesCS7A01G327500 chr6A 93.388 121 7 1 2735 2855 537040696 537040815 9.270000e-41 178.0
24 TraesCS7A01G327500 chr1A 94.872 117 6 0 2738 2854 102424425 102424309 1.990000e-42 183.0
25 TraesCS7A01G327500 chr1A 89.000 100 11 0 2942 3041 102806201 102806102 1.230000e-24 124.0
26 TraesCS7A01G327500 chr1A 89.000 100 10 1 2944 3042 486046173 486046074 4.410000e-24 122.0
27 TraesCS7A01G327500 chr1A 87.059 85 11 0 3038 3122 105322583 105322667 2.670000e-16 97.1
28 TraesCS7A01G327500 chr1A 83.721 86 14 0 3037 3122 288687141 288687226 7.480000e-12 82.4
29 TraesCS7A01G327500 chrUn 96.364 110 4 0 2748 2857 352766877 352766986 7.170000e-42 182.0
30 TraesCS7A01G327500 chr5A 95.575 113 5 0 2747 2859 492896368 492896256 7.170000e-42 182.0
31 TraesCS7A01G327500 chr5A 93.750 96 4 2 2948 3042 632992674 632992768 3.380000e-30 143.0
32 TraesCS7A01G327500 chr5A 83.750 160 16 5 73 231 708162152 708162302 3.380000e-30 143.0
33 TraesCS7A01G327500 chr5A 86.842 76 9 1 3048 3122 523027086 523027011 2.080000e-12 84.2
34 TraesCS7A01G327500 chr5A 100.000 38 0 0 2278 2315 561167191 561167228 1.620000e-08 71.3
35 TraesCS7A01G327500 chr6D 94.828 116 5 1 2740 2854 38346318 38346433 2.580000e-41 180.0
36 TraesCS7A01G327500 chr2A 83.251 203 21 5 1658 1848 775248817 775248616 1.200000e-39 174.0
37 TraesCS7A01G327500 chr2A 83.251 203 21 5 1658 1848 775272163 775271962 1.200000e-39 174.0
38 TraesCS7A01G327500 chr2A 92.222 90 7 0 2953 3042 187514382 187514293 9.470000e-26 128.0
39 TraesCS7A01G327500 chr2A 84.884 86 13 0 3037 3122 775976663 775976748 1.610000e-13 87.9
40 TraesCS7A01G327500 chr3B 85.890 163 13 5 73 234 558508788 558508941 7.220000e-37 165.0
41 TraesCS7A01G327500 chr3B 92.222 90 7 0 2951 3040 421670589 421670500 9.470000e-26 128.0
42 TraesCS7A01G327500 chr3B 84.375 64 6 3 2278 2340 473253251 473253191 3.510000e-05 60.2
43 TraesCS7A01G327500 chr2D 81.553 206 22 6 1658 1848 649565385 649565589 4.350000e-34 156.0
44 TraesCS7A01G327500 chr2D 83.721 86 14 0 3037 3122 651698129 651698044 7.480000e-12 82.4
45 TraesCS7A01G327500 chr4D 91.304 92 8 0 2951 3042 329883026 329882935 3.410000e-25 126.0
46 TraesCS7A01G327500 chr4D 75.758 231 36 15 1656 1876 95289859 95289639 7.430000e-17 99.0
47 TraesCS7A01G327500 chr1B 91.304 92 8 0 2955 3046 6011734 6011643 3.410000e-25 126.0
48 TraesCS7A01G327500 chr1B 87.059 85 11 0 3038 3122 222194595 222194511 2.670000e-16 97.1
49 TraesCS7A01G327500 chr1B 86.747 83 11 0 3039 3121 596252760 596252678 3.460000e-15 93.5
50 TraesCS7A01G327500 chr1B 85.246 61 7 2 2278 2337 263618852 263618793 9.750000e-06 62.1
51 TraesCS7A01G327500 chr1D 85.484 124 12 6 2952 3073 229605990 229606109 1.230000e-24 124.0
52 TraesCS7A01G327500 chr6B 86.792 106 10 3 2958 3061 572555498 572555601 7.380000e-22 115.0
53 TraesCS7A01G327500 chr6B 88.506 87 10 0 2954 3040 20980052 20980138 4.440000e-19 106.0
54 TraesCS7A01G327500 chr6B 87.059 85 11 0 3038 3122 240546140 240546056 2.670000e-16 97.1
55 TraesCS7A01G327500 chr6B 84.746 59 7 2 2278 2335 57584094 57584037 1.260000e-04 58.4
56 TraesCS7A01G327500 chr6B 86.792 53 5 1 2278 2330 583448078 583448128 1.260000e-04 58.4
57 TraesCS7A01G327500 chr4B 75.111 225 48 8 1656 1876 134825135 134824915 7.430000e-17 99.0
58 TraesCS7A01G327500 chr4A 75.369 203 37 10 1656 1848 484672671 484672870 5.780000e-13 86.1
59 TraesCS7A01G327500 chr4A 87.097 62 3 4 2278 2337 747479 747537 7.530000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G327500 chr7A 475961308 475964560 3252 True 6008.000000 6008 100.000000 1 3253 1 chr7A.!!$R2 3252
1 TraesCS7A01G327500 chr7D 414085922 414088896 2974 True 1039.500000 3243 89.412250 8 3253 4 chr7D.!!$R1 3245
2 TraesCS7A01G327500 chr7B 428482158 428485044 2886 True 671.366667 2905 92.222833 1 3253 6 chr7B.!!$R2 3252

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
519 532 0.171903 GCTTGCCGCATGTGAAGATT 59.828 50.0 8.11 0.0 38.92 2.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2328 0.035598 TTGGCGCAGTGGTAAAGCTA 59.964 50.0 10.83 0.0 0.0 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 2.827921 GGCTTGTTGGGATTCATTCACT 59.172 45.455 0.00 0.00 0.00 3.41
31 33 6.350445 GCTTGTTGGGATTCATTCACTAACAT 60.350 38.462 0.00 0.00 32.53 2.71
38 40 7.016072 TGGGATTCATTCACTAACATGGTTTTT 59.984 33.333 0.00 0.00 0.00 1.94
44 46 8.865090 TCATTCACTAACATGGTTTTTAATGGT 58.135 29.630 0.00 0.00 0.00 3.55
46 48 6.451393 TCACTAACATGGTTTTTAATGGTGC 58.549 36.000 0.00 0.00 0.00 5.01
51 53 2.748605 TGGTTTTTAATGGTGCTTGCG 58.251 42.857 0.00 0.00 0.00 4.85
62 64 4.137872 GCTTGCGGCATGGCATGT 62.138 61.111 26.94 0.00 43.52 3.21
63 65 2.103538 CTTGCGGCATGGCATGTC 59.896 61.111 26.94 24.52 43.52 3.06
64 66 2.675772 TTGCGGCATGGCATGTCA 60.676 55.556 29.44 20.25 43.52 3.58
65 67 2.607668 CTTGCGGCATGGCATGTCAG 62.608 60.000 29.44 22.14 43.52 3.51
66 68 3.896133 GCGGCATGGCATGTCAGG 61.896 66.667 29.44 16.45 33.60 3.86
67 69 2.438975 CGGCATGGCATGTCAGGT 60.439 61.111 29.44 0.00 33.60 4.00
68 70 1.153188 CGGCATGGCATGTCAGGTA 60.153 57.895 29.44 0.00 33.60 3.08
69 71 1.162181 CGGCATGGCATGTCAGGTAG 61.162 60.000 29.44 10.87 33.60 3.18
70 72 0.181114 GGCATGGCATGTCAGGTAGA 59.819 55.000 26.22 0.00 34.33 2.59
71 73 1.590932 GCATGGCATGTCAGGTAGAG 58.409 55.000 26.94 0.00 0.00 2.43
144 146 0.329596 ACAAGGCCAAGGTCTCATCC 59.670 55.000 5.01 0.00 0.00 3.51
250 255 2.618053 GCACTGCGTGGACTACTATTT 58.382 47.619 10.02 0.00 33.64 1.40
251 256 3.777478 GCACTGCGTGGACTACTATTTA 58.223 45.455 10.02 0.00 33.64 1.40
252 257 3.550678 GCACTGCGTGGACTACTATTTAC 59.449 47.826 10.02 0.00 33.64 2.01
258 263 5.297776 TGCGTGGACTACTATTTACTACTCC 59.702 44.000 0.00 0.00 0.00 3.85
263 268 9.625747 GTGGACTACTATTTACTACTCCTACTT 57.374 37.037 0.00 0.00 0.00 2.24
264 269 9.844257 TGGACTACTATTTACTACTCCTACTTC 57.156 37.037 0.00 0.00 0.00 3.01
265 270 9.283768 GGACTACTATTTACTACTCCTACTTCC 57.716 40.741 0.00 0.00 0.00 3.46
415 428 6.365247 CCTCCTATATGTACGTATGTTGTTGC 59.635 42.308 16.41 0.00 0.00 4.17
469 482 0.878416 GCAGATTAAACCACGCCACA 59.122 50.000 0.00 0.00 0.00 4.17
470 483 1.135689 GCAGATTAAACCACGCCACAG 60.136 52.381 0.00 0.00 0.00 3.66
519 532 0.171903 GCTTGCCGCATGTGAAGATT 59.828 50.000 8.11 0.00 38.92 2.40
527 540 4.201628 GCCGCATGTGAAGATTATATCGAC 60.202 45.833 8.11 0.00 0.00 4.20
578 593 0.666577 GATGGACGGCGCATACCTAC 60.667 60.000 10.83 3.84 0.00 3.18
625 640 8.459911 GTAGCACCTACCAATACCAATTAAAT 57.540 34.615 0.00 0.00 31.38 1.40
758 777 2.643551 ACCCCAAGTGATTGATTAGCG 58.356 47.619 0.00 0.00 0.00 4.26
806 825 3.498927 CAGAAATTGCACTCCACCATC 57.501 47.619 0.00 0.00 0.00 3.51
808 827 2.170166 GAAATTGCACTCCACCATCCA 58.830 47.619 0.00 0.00 0.00 3.41
809 828 2.537633 AATTGCACTCCACCATCCAT 57.462 45.000 0.00 0.00 0.00 3.41
810 829 1.771565 ATTGCACTCCACCATCCATG 58.228 50.000 0.00 0.00 0.00 3.66
837 862 2.240921 GGCATCTTCCTTCCTTTCTCCT 59.759 50.000 0.00 0.00 0.00 3.69
845 870 3.013417 TCCTTCCTTTCTCCTCTCCTGAT 59.987 47.826 0.00 0.00 0.00 2.90
864 889 8.450578 TCCTGATAAATACATCATGAACAACC 57.549 34.615 0.00 0.00 34.50 3.77
899 924 1.410882 CCAGGCAACCTAGCTACTCTC 59.589 57.143 0.00 0.00 29.64 3.20
1013 1046 0.476338 AAGCCCACATACACACACCA 59.524 50.000 0.00 0.00 0.00 4.17
1046 1079 5.299279 ACTCTCTCTAATTGAGTAGAGCTGC 59.701 44.000 19.45 0.00 44.62 5.25
1047 1080 5.445069 TCTCTCTAATTGAGTAGAGCTGCT 58.555 41.667 0.00 0.00 44.62 4.24
1069 1102 2.933287 CCCTGCCCACACCCAGTA 60.933 66.667 0.00 0.00 0.00 2.74
1075 1108 3.319198 CCACACCCAGTAGGCGGT 61.319 66.667 0.00 0.00 40.58 5.68
1097 1130 2.117156 GCACCATAGCCACAGCCTG 61.117 63.158 0.00 0.00 41.25 4.85
1125 1158 0.924090 GTGCATCGTCCTGTTCGATC 59.076 55.000 0.00 0.00 44.49 3.69
1177 1210 1.064003 TGGTGAAGAAGCTTGGCCTA 58.936 50.000 2.10 0.00 0.00 3.93
1180 1213 2.504367 GTGAAGAAGCTTGGCCTAACA 58.496 47.619 2.10 0.00 0.00 2.41
1183 1216 2.426842 AGAAGCTTGGCCTAACATCC 57.573 50.000 2.10 0.00 0.00 3.51
1223 1256 1.371183 GTGGACAGTGCTGCCAGTA 59.629 57.895 13.03 0.00 37.41 2.74
1561 1603 2.447714 GGCCACCTCCTCCTCCATC 61.448 68.421 0.00 0.00 0.00 3.51
1760 1802 1.451936 GTCAAGGACTGGTGCTGGT 59.548 57.895 0.00 0.00 0.00 4.00
1920 1965 2.435059 GTCCTCCTTCAGCGGCAC 60.435 66.667 1.45 0.00 0.00 5.01
2130 2178 1.747355 AGCTATTGTGTGATTGCCTGC 59.253 47.619 0.00 0.00 0.00 4.85
2142 2190 0.251165 TTGCCTGCCAGTTAACTCCC 60.251 55.000 4.77 0.00 0.00 4.30
2195 2247 3.119602 TGTTTGCTAGCTAGGTGAGTACG 60.120 47.826 22.10 0.00 0.00 3.67
2196 2248 2.414994 TGCTAGCTAGGTGAGTACGT 57.585 50.000 22.10 0.00 0.00 3.57
2197 2249 3.548745 TGCTAGCTAGGTGAGTACGTA 57.451 47.619 22.10 0.00 0.00 3.57
2198 2250 3.201290 TGCTAGCTAGGTGAGTACGTAC 58.799 50.000 22.10 18.10 0.00 3.67
2199 2251 3.118482 TGCTAGCTAGGTGAGTACGTACT 60.118 47.826 27.71 27.71 39.71 2.73
2200 2252 3.248125 GCTAGCTAGGTGAGTACGTACTG 59.752 52.174 31.91 17.17 36.50 2.74
2213 2265 7.686938 GTGAGTACGTACTGTATTTGAATTTGC 59.313 37.037 31.91 12.77 36.50 3.68
2232 2284 1.775039 CGTGCACAGCCCGGATATTG 61.775 60.000 18.64 0.00 0.00 1.90
2233 2285 1.823470 TGCACAGCCCGGATATTGC 60.823 57.895 0.73 7.11 0.00 3.56
2234 2286 2.896801 GCACAGCCCGGATATTGCG 61.897 63.158 0.73 0.00 0.00 4.85
2235 2287 1.523711 CACAGCCCGGATATTGCGT 60.524 57.895 0.73 0.00 0.00 5.24
2236 2288 0.249699 CACAGCCCGGATATTGCGTA 60.250 55.000 0.73 0.00 0.00 4.42
2237 2289 0.685097 ACAGCCCGGATATTGCGTAT 59.315 50.000 0.73 0.00 0.00 3.06
2238 2290 1.078709 CAGCCCGGATATTGCGTATG 58.921 55.000 0.73 0.00 0.00 2.39
2239 2291 0.973632 AGCCCGGATATTGCGTATGA 59.026 50.000 0.73 0.00 0.00 2.15
2240 2292 1.066858 AGCCCGGATATTGCGTATGAG 60.067 52.381 0.73 0.00 0.00 2.90
2241 2293 1.067142 GCCCGGATATTGCGTATGAGA 60.067 52.381 0.73 0.00 0.00 3.27
2242 2294 2.611971 GCCCGGATATTGCGTATGAGAA 60.612 50.000 0.73 0.00 0.00 2.87
2243 2295 3.659786 CCCGGATATTGCGTATGAGAAA 58.340 45.455 0.73 0.00 0.00 2.52
2244 2296 4.062293 CCCGGATATTGCGTATGAGAAAA 58.938 43.478 0.73 0.00 0.00 2.29
2245 2297 4.084013 CCCGGATATTGCGTATGAGAAAAC 60.084 45.833 0.73 0.00 0.00 2.43
2246 2298 4.084013 CCGGATATTGCGTATGAGAAAACC 60.084 45.833 0.00 0.00 0.00 3.27
2247 2299 4.509970 CGGATATTGCGTATGAGAAAACCA 59.490 41.667 0.00 0.00 0.00 3.67
2248 2300 5.007234 CGGATATTGCGTATGAGAAAACCAA 59.993 40.000 0.00 0.00 0.00 3.67
2249 2301 6.457663 CGGATATTGCGTATGAGAAAACCAAA 60.458 38.462 0.00 0.00 0.00 3.28
2250 2302 7.254852 GGATATTGCGTATGAGAAAACCAAAA 58.745 34.615 0.00 0.00 0.00 2.44
2251 2303 7.757624 GGATATTGCGTATGAGAAAACCAAAAA 59.242 33.333 0.00 0.00 0.00 1.94
2273 2325 2.601664 AAAAAGGCAACCTGGTGCA 58.398 47.368 18.44 0.00 46.81 4.57
2274 2326 1.130777 AAAAAGGCAACCTGGTGCAT 58.869 45.000 18.44 11.55 46.81 3.96
2275 2327 0.393820 AAAAGGCAACCTGGTGCATG 59.606 50.000 18.44 7.86 46.81 4.06
2276 2328 0.760189 AAAGGCAACCTGGTGCATGT 60.760 50.000 18.44 7.83 46.81 3.21
2277 2329 0.112218 AAGGCAACCTGGTGCATGTA 59.888 50.000 18.44 0.00 46.81 2.29
2278 2330 0.322816 AGGCAACCTGGTGCATGTAG 60.323 55.000 18.44 0.00 46.81 2.74
2279 2331 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2280 2332 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2281 2333 1.538047 CAACCTGGTGCATGTAGCTT 58.462 50.000 14.15 0.00 45.94 3.74
2282 2334 1.888512 CAACCTGGTGCATGTAGCTTT 59.111 47.619 14.15 2.47 45.94 3.51
2283 2335 3.081061 CAACCTGGTGCATGTAGCTTTA 58.919 45.455 14.15 0.00 45.94 1.85
2284 2336 2.711542 ACCTGGTGCATGTAGCTTTAC 58.288 47.619 14.15 0.00 45.94 2.01
2285 2337 2.017049 CCTGGTGCATGTAGCTTTACC 58.983 52.381 14.15 0.00 45.94 2.85
2286 2338 2.617788 CCTGGTGCATGTAGCTTTACCA 60.618 50.000 14.15 1.73 42.56 3.25
2287 2339 2.420022 CTGGTGCATGTAGCTTTACCAC 59.580 50.000 14.15 0.52 40.66 4.16
2288 2340 2.039746 TGGTGCATGTAGCTTTACCACT 59.960 45.455 14.15 0.00 40.66 4.00
2289 2341 2.420022 GGTGCATGTAGCTTTACCACTG 59.580 50.000 5.68 0.00 45.94 3.66
2290 2342 2.083774 TGCATGTAGCTTTACCACTGC 58.916 47.619 0.00 0.00 45.94 4.40
2291 2343 1.062587 GCATGTAGCTTTACCACTGCG 59.937 52.381 0.00 0.00 41.15 5.18
2292 2344 1.062587 CATGTAGCTTTACCACTGCGC 59.937 52.381 0.00 0.00 0.00 6.09
2293 2345 0.672401 TGTAGCTTTACCACTGCGCC 60.672 55.000 4.18 0.00 0.00 6.53
2294 2346 0.672401 GTAGCTTTACCACTGCGCCA 60.672 55.000 4.18 0.00 0.00 5.69
2295 2347 0.035598 TAGCTTTACCACTGCGCCAA 59.964 50.000 4.18 0.00 0.00 4.52
2296 2348 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
2297 2349 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
2298 2350 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
2299 2351 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
2300 2352 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2400 2456 0.094730 GACGCGAGAATTTTCACCGG 59.905 55.000 15.93 0.00 0.00 5.28
2437 2493 4.617959 TCTCAGAAACAGTTCAGTTACCG 58.382 43.478 0.00 0.00 36.09 4.02
2493 2550 8.856103 TCAGACGGATCTAAATATGTGATTGTA 58.144 33.333 0.00 0.00 32.25 2.41
2612 2674 4.281898 TGATGCCTCTCCACATCATATG 57.718 45.455 0.00 0.00 45.79 1.78
2631 2693 1.744522 TGCATGGATGGTGAAATGACG 59.255 47.619 0.00 0.00 0.00 4.35
2642 2704 1.412710 TGAAATGACGGGCCTAGCTAG 59.587 52.381 14.20 14.20 0.00 3.42
2692 2754 1.280133 TCATTCTCAGGTTGGAGCTGG 59.720 52.381 0.00 0.00 43.47 4.85
2698 2760 1.774254 TCAGGTTGGAGCTGGAAGAAA 59.226 47.619 0.00 0.00 43.47 2.52
2706 2768 2.485814 GGAGCTGGAAGAAACACATCAC 59.514 50.000 0.00 0.00 34.07 3.06
2709 2771 2.158449 GCTGGAAGAAACACATCACTCG 59.842 50.000 0.00 0.00 34.07 4.18
2722 2784 1.775385 TCACTCGCTGGGTCATCATA 58.225 50.000 0.00 0.00 0.00 2.15
2724 2786 3.496331 TCACTCGCTGGGTCATCATATA 58.504 45.455 0.00 0.00 0.00 0.86
2752 2814 9.706691 TGGATCGATTGAATTAGTTATTACTCC 57.293 33.333 0.00 0.00 35.78 3.85
2753 2815 9.152595 GGATCGATTGAATTAGTTATTACTCCC 57.847 37.037 0.00 0.00 35.78 4.30
2754 2816 9.930693 GATCGATTGAATTAGTTATTACTCCCT 57.069 33.333 0.00 0.00 35.78 4.20
2755 2817 9.930693 ATCGATTGAATTAGTTATTACTCCCTC 57.069 33.333 0.00 0.00 35.78 4.30
2756 2818 8.365647 TCGATTGAATTAGTTATTACTCCCTCC 58.634 37.037 0.00 0.00 35.78 4.30
2757 2819 7.328737 CGATTGAATTAGTTATTACTCCCTCCG 59.671 40.741 0.00 0.00 35.78 4.63
2758 2820 7.427989 TTGAATTAGTTATTACTCCCTCCGT 57.572 36.000 0.00 0.00 35.78 4.69
2759 2821 7.427989 TGAATTAGTTATTACTCCCTCCGTT 57.572 36.000 0.00 0.00 35.78 4.44
2760 2822 7.495055 TGAATTAGTTATTACTCCCTCCGTTC 58.505 38.462 0.00 0.00 35.78 3.95
2761 2823 7.343833 TGAATTAGTTATTACTCCCTCCGTTCT 59.656 37.037 0.00 0.00 35.78 3.01
2762 2824 6.461110 TTAGTTATTACTCCCTCCGTTCTG 57.539 41.667 0.00 0.00 35.78 3.02
2763 2825 4.607239 AGTTATTACTCCCTCCGTTCTGA 58.393 43.478 0.00 0.00 0.00 3.27
2764 2826 5.021458 AGTTATTACTCCCTCCGTTCTGAA 58.979 41.667 0.00 0.00 0.00 3.02
2765 2827 5.661759 AGTTATTACTCCCTCCGTTCTGAAT 59.338 40.000 0.00 0.00 0.00 2.57
2766 2828 6.156429 AGTTATTACTCCCTCCGTTCTGAATT 59.844 38.462 0.00 0.00 0.00 2.17
2767 2829 7.343833 AGTTATTACTCCCTCCGTTCTGAATTA 59.656 37.037 0.00 0.00 0.00 1.40
2768 2830 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2769 2831 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2770 2832 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2771 2833 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2772 2834 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2773 2835 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2774 2836 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2775 2837 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2776 2838 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2777 2839 3.181530 CCGTTCTGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
2778 2840 3.181530 CGTTCTGAATTACTTGTCGCAGG 60.182 47.826 0.00 0.00 0.00 4.85
2779 2841 3.678056 TCTGAATTACTTGTCGCAGGT 57.322 42.857 0.00 0.91 0.00 4.00
2780 2842 4.794278 TCTGAATTACTTGTCGCAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
2781 2843 5.339008 TCTGAATTACTTGTCGCAGGTAT 57.661 39.130 3.46 0.00 0.00 2.73
2782 2844 5.109210 TCTGAATTACTTGTCGCAGGTATG 58.891 41.667 3.46 0.00 0.00 2.39
2783 2845 4.188462 TGAATTACTTGTCGCAGGTATGG 58.812 43.478 3.46 0.00 0.00 2.74
2784 2846 4.081365 TGAATTACTTGTCGCAGGTATGGA 60.081 41.667 3.46 0.00 0.00 3.41
2785 2847 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
2786 2848 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
2787 2849 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
2788 2850 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
2789 2851 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
2790 2852 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
2791 2853 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
2792 2854 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
2793 2855 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
2794 2856 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
2795 2857 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
2796 2858 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
2797 2859 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
2798 2860 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
2799 2861 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
2800 2862 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
2826 2888 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
2827 2889 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
2828 2890 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
2829 2891 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2830 2892 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
2831 2893 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
2832 2894 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
2833 2895 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
2834 2896 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
2835 2897 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
2836 2898 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
2837 2899 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
2838 2900 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
2839 2901 7.120579 ACATCCATTTCTGCGACAAGTAATTTA 59.879 33.333 0.00 0.00 0.00 1.40
2840 2902 7.072177 TCCATTTCTGCGACAAGTAATTTAG 57.928 36.000 0.00 0.00 0.00 1.85
2841 2903 6.876789 TCCATTTCTGCGACAAGTAATTTAGA 59.123 34.615 0.00 0.00 0.00 2.10
2842 2904 7.389330 TCCATTTCTGCGACAAGTAATTTAGAA 59.611 33.333 0.00 0.00 0.00 2.10
2843 2905 7.481798 CCATTTCTGCGACAAGTAATTTAGAAC 59.518 37.037 0.00 0.00 0.00 3.01
2844 2906 5.756950 TCTGCGACAAGTAATTTAGAACG 57.243 39.130 0.00 0.00 0.00 3.95
2845 2907 4.624024 TCTGCGACAAGTAATTTAGAACGG 59.376 41.667 0.00 0.00 0.00 4.44
2846 2908 4.558178 TGCGACAAGTAATTTAGAACGGA 58.442 39.130 0.00 0.00 0.00 4.69
2847 2909 4.624024 TGCGACAAGTAATTTAGAACGGAG 59.376 41.667 0.00 0.00 0.00 4.63
2848 2910 4.860907 GCGACAAGTAATTTAGAACGGAGA 59.139 41.667 0.00 0.00 0.00 3.71
2849 2911 5.004535 GCGACAAGTAATTTAGAACGGAGAG 59.995 44.000 0.00 0.00 0.00 3.20
2850 2912 6.320171 CGACAAGTAATTTAGAACGGAGAGA 58.680 40.000 0.00 0.00 0.00 3.10
2851 2913 6.469595 CGACAAGTAATTTAGAACGGAGAGAG 59.530 42.308 0.00 0.00 0.00 3.20
2852 2914 7.229581 ACAAGTAATTTAGAACGGAGAGAGT 57.770 36.000 0.00 0.00 0.00 3.24
2853 2915 8.345724 ACAAGTAATTTAGAACGGAGAGAGTA 57.654 34.615 0.00 0.00 0.00 2.59
2854 2916 8.968969 ACAAGTAATTTAGAACGGAGAGAGTAT 58.031 33.333 0.00 0.00 0.00 2.12
2855 2917 9.239002 CAAGTAATTTAGAACGGAGAGAGTATG 57.761 37.037 0.00 0.00 0.00 2.39
2856 2918 8.522542 AGTAATTTAGAACGGAGAGAGTATGT 57.477 34.615 0.00 0.00 0.00 2.29
2857 2919 8.407064 AGTAATTTAGAACGGAGAGAGTATGTG 58.593 37.037 0.00 0.00 0.00 3.21
2858 2920 4.634184 TTAGAACGGAGAGAGTATGTGC 57.366 45.455 0.00 0.00 0.00 4.57
2859 2921 1.402259 AGAACGGAGAGAGTATGTGCG 59.598 52.381 0.00 0.00 42.03 5.34
2860 2922 2.869636 ACGGAGAGAGTATGTGCGT 58.130 52.632 0.00 0.00 44.48 5.24
2861 2923 3.242268 CGGAGAGAGTATGTGCGTG 57.758 57.895 0.00 0.00 31.00 5.34
2866 2928 3.560503 GAGAGAGTATGTGCGTGATAGC 58.439 50.000 0.00 0.00 37.71 2.97
2869 2931 2.952310 AGAGTATGTGCGTGATAGCTGA 59.048 45.455 0.00 0.00 38.13 4.26
2871 2933 3.906998 AGTATGTGCGTGATAGCTGATC 58.093 45.455 0.00 0.00 38.13 2.92
2924 2988 1.503542 GTGAAACATGCTGCTCGGG 59.496 57.895 0.00 0.00 36.32 5.14
2925 2989 0.955428 GTGAAACATGCTGCTCGGGA 60.955 55.000 0.00 0.00 36.32 5.14
2931 3003 0.320247 CATGCTGCTCGGGATAGGAC 60.320 60.000 0.00 0.00 0.00 3.85
2943 3015 1.559682 GGATAGGACCCACAAGAGCAA 59.440 52.381 0.00 0.00 0.00 3.91
2967 3042 3.633065 GCAGAATACTACTTCCTCCGTCT 59.367 47.826 0.00 0.00 0.00 4.18
2970 3045 5.533154 CAGAATACTACTTCCTCCGTCTCAT 59.467 44.000 0.00 0.00 0.00 2.90
2975 3050 9.756571 AATACTACTTCCTCCGTCTCATAATAT 57.243 33.333 0.00 0.00 0.00 1.28
2978 3053 9.584008 ACTACTTCCTCCGTCTCATAATATAAA 57.416 33.333 0.00 0.00 0.00 1.40
3018 3093 9.415544 CTAGTGTAGTGTTAAAAACGTCCTTAT 57.584 33.333 0.00 0.00 0.00 1.73
3020 3095 9.933723 AGTGTAGTGTTAAAAACGTCCTTATAT 57.066 29.630 0.00 0.00 0.00 0.86
3031 3106 7.989416 AAACGTCCTTATATTTTGGAACAGA 57.011 32.000 0.00 0.00 42.39 3.41
3032 3107 7.611213 AACGTCCTTATATTTTGGAACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
3033 3108 6.113411 ACGTCCTTATATTTTGGAACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
3034 3109 5.527582 CGTCCTTATATTTTGGAACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
3035 3110 6.631766 CGTCCTTATATTTTGGAACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
3036 3111 6.768381 GTCCTTATATTTTGGAACAGAGGGAG 59.232 42.308 0.00 0.00 42.39 4.30
3037 3112 6.447084 TCCTTATATTTTGGAACAGAGGGAGT 59.553 38.462 0.00 0.00 42.39 3.85
3038 3113 7.626084 TCCTTATATTTTGGAACAGAGGGAGTA 59.374 37.037 0.00 0.00 42.39 2.59
3039 3114 7.715686 CCTTATATTTTGGAACAGAGGGAGTAC 59.284 40.741 0.00 0.00 42.39 2.73
3040 3115 6.893020 ATATTTTGGAACAGAGGGAGTACT 57.107 37.500 0.00 0.00 42.39 2.73
3041 3116 5.584551 ATTTTGGAACAGAGGGAGTACTT 57.415 39.130 0.00 0.00 42.39 2.24
3042 3117 4.618920 TTTGGAACAGAGGGAGTACTTC 57.381 45.455 0.00 0.00 42.39 3.01
3043 3118 2.537143 TGGAACAGAGGGAGTACTTCC 58.463 52.381 12.91 12.91 46.00 3.46
3044 3119 2.111972 TGGAACAGAGGGAGTACTTCCT 59.888 50.000 23.71 23.71 45.98 3.36
3045 3120 3.174779 GGAACAGAGGGAGTACTTCCTT 58.825 50.000 24.27 8.08 45.98 3.36
3046 3121 3.583526 GGAACAGAGGGAGTACTTCCTTT 59.416 47.826 24.27 16.04 45.98 3.11
3047 3122 4.563786 GGAACAGAGGGAGTACTTCCTTTG 60.564 50.000 30.65 30.65 45.98 2.77
3048 3123 3.588569 ACAGAGGGAGTACTTCCTTTGT 58.411 45.455 31.81 31.81 45.98 2.83
3049 3124 3.579151 ACAGAGGGAGTACTTCCTTTGTC 59.421 47.826 31.81 17.41 42.52 3.18
3050 3125 3.835395 CAGAGGGAGTACTTCCTTTGTCT 59.165 47.826 26.26 16.05 45.98 3.41
3051 3126 4.081917 CAGAGGGAGTACTTCCTTTGTCTC 60.082 50.000 26.26 13.25 45.98 3.36
3052 3127 3.833070 GAGGGAGTACTTCCTTTGTCTCA 59.167 47.826 24.27 0.00 45.98 3.27
3053 3128 4.430441 AGGGAGTACTTCCTTTGTCTCAT 58.570 43.478 17.90 0.00 45.98 2.90
3054 3129 5.590818 AGGGAGTACTTCCTTTGTCTCATA 58.409 41.667 17.90 0.00 45.98 2.15
3055 3130 6.023603 AGGGAGTACTTCCTTTGTCTCATAA 58.976 40.000 17.90 0.00 45.98 1.90
3056 3131 6.674419 AGGGAGTACTTCCTTTGTCTCATAAT 59.326 38.462 17.90 0.00 45.98 1.28
3057 3132 7.844779 AGGGAGTACTTCCTTTGTCTCATAATA 59.155 37.037 17.90 0.00 45.98 0.98
3058 3133 8.652290 GGGAGTACTTCCTTTGTCTCATAATAT 58.348 37.037 13.55 0.00 45.98 1.28
3084 3159 8.885494 AAGACATTTTTGCAAGCTAACATAAA 57.115 26.923 0.00 6.87 0.00 1.40
3085 3160 9.492973 AAGACATTTTTGCAAGCTAACATAAAT 57.507 25.926 0.00 9.86 30.68 1.40
3086 3161 9.492973 AGACATTTTTGCAAGCTAACATAAATT 57.507 25.926 11.89 6.78 28.90 1.82
3087 3162 9.532697 GACATTTTTGCAAGCTAACATAAATTG 57.467 29.630 11.89 11.66 28.90 2.32
3088 3163 8.016801 ACATTTTTGCAAGCTAACATAAATTGC 58.983 29.630 11.89 4.87 44.97 3.56
3094 3169 7.765228 GCAAGCTAACATAAATTGCAAAAAC 57.235 32.000 1.71 0.00 44.32 2.43
3095 3170 6.516017 GCAAGCTAACATAAATTGCAAAAACG 59.484 34.615 1.71 0.00 44.32 3.60
3096 3171 7.563270 CAAGCTAACATAAATTGCAAAAACGT 58.437 30.769 1.71 0.00 0.00 3.99
3097 3172 7.707774 AGCTAACATAAATTGCAAAAACGTT 57.292 28.000 1.71 6.55 0.00 3.99
3098 3173 7.783209 AGCTAACATAAATTGCAAAAACGTTC 58.217 30.769 1.71 0.00 0.00 3.95
3099 3174 7.651704 AGCTAACATAAATTGCAAAAACGTTCT 59.348 29.630 1.71 0.00 0.00 3.01
3100 3175 8.907685 GCTAACATAAATTGCAAAAACGTTCTA 58.092 29.630 1.71 0.00 0.00 2.10
3146 3224 8.877864 AACAAATAATCTGGTGTAATCCTCAA 57.122 30.769 0.00 0.00 0.00 3.02
3152 3230 3.264193 TCTGGTGTAATCCTCAAGCATGT 59.736 43.478 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.562298 GTGAATGAATCCCAACAAGCCA 59.438 45.455 0.00 0.00 0.00 4.75
5 6 2.827921 AGTGAATGAATCCCAACAAGCC 59.172 45.455 0.00 0.00 0.00 4.35
26 28 5.698545 GCAAGCACCATTAAAAACCATGTTA 59.301 36.000 0.00 0.00 0.00 2.41
31 33 2.546795 CCGCAAGCACCATTAAAAACCA 60.547 45.455 0.00 0.00 0.00 3.67
46 48 2.103538 GACATGCCATGCCGCAAG 59.896 61.111 4.17 0.00 43.24 4.01
51 53 0.181114 TCTACCTGACATGCCATGCC 59.819 55.000 4.17 0.00 0.00 4.40
56 58 1.067212 CGGTACTCTACCTGACATGCC 59.933 57.143 0.00 0.00 46.81 4.40
60 62 0.033796 CCCCGGTACTCTACCTGACA 60.034 60.000 0.00 0.00 46.81 3.58
61 63 0.257039 TCCCCGGTACTCTACCTGAC 59.743 60.000 0.00 0.00 46.81 3.51
62 64 0.549950 CTCCCCGGTACTCTACCTGA 59.450 60.000 0.00 0.00 46.81 3.86
63 65 0.549950 TCTCCCCGGTACTCTACCTG 59.450 60.000 0.00 0.00 46.81 4.00
64 66 1.302907 TTCTCCCCGGTACTCTACCT 58.697 55.000 0.00 0.00 46.81 3.08
65 67 1.962100 CATTCTCCCCGGTACTCTACC 59.038 57.143 0.00 0.00 45.52 3.18
66 68 2.885894 CTCATTCTCCCCGGTACTCTAC 59.114 54.545 0.00 0.00 0.00 2.59
67 69 2.781757 TCTCATTCTCCCCGGTACTCTA 59.218 50.000 0.00 0.00 0.00 2.43
68 70 1.569548 TCTCATTCTCCCCGGTACTCT 59.430 52.381 0.00 0.00 0.00 3.24
69 71 2.068834 TCTCATTCTCCCCGGTACTC 57.931 55.000 0.00 0.00 0.00 2.59
70 72 2.544844 TTCTCATTCTCCCCGGTACT 57.455 50.000 0.00 0.00 0.00 2.73
71 73 2.966516 AGATTCTCATTCTCCCCGGTAC 59.033 50.000 0.00 0.00 0.00 3.34
144 146 6.664515 TGCAAAGTAACCTTAATCTTTCACG 58.335 36.000 0.00 0.00 0.00 4.35
188 190 4.445879 CCATCCATCCATCTGTCATGTCTT 60.446 45.833 0.00 0.00 0.00 3.01
251 256 8.946797 TTGTTTTAGTAGGAAGTAGGAGTAGT 57.053 34.615 0.00 0.00 0.00 2.73
263 268 7.472334 ACGTCCTCTAATTGTTTTAGTAGGA 57.528 36.000 0.00 0.00 31.81 2.94
264 269 8.543862 AAACGTCCTCTAATTGTTTTAGTAGG 57.456 34.615 0.00 0.00 29.01 3.18
265 270 9.420551 AGAAACGTCCTCTAATTGTTTTAGTAG 57.579 33.333 0.00 0.00 33.27 2.57
266 271 9.415544 GAGAAACGTCCTCTAATTGTTTTAGTA 57.584 33.333 9.80 0.00 33.27 1.82
267 272 8.148999 AGAGAAACGTCCTCTAATTGTTTTAGT 58.851 33.333 16.03 0.00 39.07 2.24
268 273 8.535690 AGAGAAACGTCCTCTAATTGTTTTAG 57.464 34.615 16.03 0.00 39.07 1.85
386 395 9.696572 ACAACATACGTACATATAGGAGGATAT 57.303 33.333 0.00 0.00 0.00 1.63
387 396 9.524496 AACAACATACGTACATATAGGAGGATA 57.476 33.333 0.00 0.00 0.00 2.59
388 397 8.304596 CAACAACATACGTACATATAGGAGGAT 58.695 37.037 0.00 0.00 0.00 3.24
389 398 7.654568 CAACAACATACGTACATATAGGAGGA 58.345 38.462 0.00 0.00 0.00 3.71
391 400 6.087687 CGCAACAACATACGTACATATAGGAG 59.912 42.308 0.00 0.00 0.00 3.69
392 401 5.916320 CGCAACAACATACGTACATATAGGA 59.084 40.000 0.00 0.00 0.00 2.94
393 402 5.916320 TCGCAACAACATACGTACATATAGG 59.084 40.000 0.00 0.00 0.00 2.57
394 403 6.979701 TCGCAACAACATACGTACATATAG 57.020 37.500 0.00 0.00 0.00 1.31
395 404 7.488792 AGTTTCGCAACAACATACGTACATATA 59.511 33.333 0.00 0.00 35.05 0.86
396 405 6.311935 AGTTTCGCAACAACATACGTACATAT 59.688 34.615 0.00 0.00 35.05 1.78
397 406 5.634439 AGTTTCGCAACAACATACGTACATA 59.366 36.000 0.00 0.00 35.05 2.29
398 407 4.449743 AGTTTCGCAACAACATACGTACAT 59.550 37.500 0.00 0.00 35.05 2.29
399 408 3.803231 AGTTTCGCAACAACATACGTACA 59.197 39.130 0.00 0.00 35.05 2.90
400 409 4.084952 TCAGTTTCGCAACAACATACGTAC 60.085 41.667 0.00 0.00 35.05 3.67
415 428 7.269937 CAGAAGCAAATTAGTTGATCAGTTTCG 59.730 37.037 0.00 0.00 39.87 3.46
527 540 6.736794 GCCCAGAGCAGAAATAAATGTAATGG 60.737 42.308 0.00 0.00 42.97 3.16
578 593 7.587757 GCTACCTTGTTGCGATTTAATCTAATG 59.412 37.037 3.34 0.00 0.00 1.90
625 640 0.534412 GCTAGCAGCTGAAGAGACCA 59.466 55.000 20.43 0.00 38.45 4.02
645 660 3.464907 ACACATGCATGATCAGTAGCTC 58.535 45.455 32.75 0.00 0.00 4.09
709 728 5.220381 GCTGCTAAACCTCTTTTGTTTACC 58.780 41.667 0.00 0.00 37.18 2.85
788 807 2.170166 TGGATGGTGGAGTGCAATTTC 58.830 47.619 0.00 0.00 0.00 2.17
808 827 2.037144 GAAGGAAGATGCCATTGCCAT 58.963 47.619 0.00 0.00 36.33 4.40
809 828 1.477553 GAAGGAAGATGCCATTGCCA 58.522 50.000 0.00 0.00 36.33 4.92
810 829 0.749049 GGAAGGAAGATGCCATTGCC 59.251 55.000 0.00 0.00 36.33 4.52
811 830 1.772836 AGGAAGGAAGATGCCATTGC 58.227 50.000 0.00 0.00 38.26 3.56
813 832 4.276642 GAGAAAGGAAGGAAGATGCCATT 58.723 43.478 0.00 0.00 0.00 3.16
837 862 9.330063 GTTGTTCATGATGTATTTATCAGGAGA 57.670 33.333 0.00 0.00 45.21 3.71
845 870 8.321353 AGAGACTGGTTGTTCATGATGTATTTA 58.679 33.333 0.00 0.00 0.00 1.40
899 924 4.452455 ACAGGAGCAATCAAAAGAGTAACG 59.548 41.667 0.00 0.00 0.00 3.18
1013 1046 5.584913 TCAATTAGAGAGAGTGAGGAAGGT 58.415 41.667 0.00 0.00 0.00 3.50
1046 1079 2.045926 GTGTGGGCAGGGCTACAG 60.046 66.667 12.15 0.00 0.00 2.74
1047 1080 3.646715 GGTGTGGGCAGGGCTACA 61.647 66.667 7.93 7.93 0.00 2.74
1075 1108 2.541547 GCTGTGGCTATGGTGCTCCA 62.542 60.000 10.45 10.45 40.80 3.86
1097 1130 1.639298 GGACGATGCACAAGAGGCAC 61.639 60.000 0.00 0.00 45.23 5.01
1125 1158 8.716909 GTTTTAGTTTGATCTCAAGGAGAAGAG 58.283 37.037 0.00 0.00 42.27 2.85
1177 1210 2.683152 GCTGCTGAAGATGAGGGATGTT 60.683 50.000 0.00 0.00 0.00 2.71
1180 1213 1.210538 TGCTGCTGAAGATGAGGGAT 58.789 50.000 0.00 0.00 0.00 3.85
1183 1216 0.733729 GCTTGCTGCTGAAGATGAGG 59.266 55.000 0.00 0.00 38.95 3.86
1258 1291 1.222936 GGTGGCAGACATGGAGGAG 59.777 63.158 0.00 0.00 0.00 3.69
1390 1432 0.318762 AGTTGGAGAAGCACGAGTCC 59.681 55.000 0.00 0.00 0.00 3.85
1651 1693 4.208686 GCCGTCGCTCCCTCGAAT 62.209 66.667 0.00 0.00 40.43 3.34
1670 1712 0.526211 TTCGACGAGTCCATGGTCAG 59.474 55.000 12.58 7.26 36.50 3.51
1760 1802 0.329261 CACCCCAGCATCTTCTCCAA 59.671 55.000 0.00 0.00 0.00 3.53
1903 1945 2.435059 GTGCCGCTGAAGGAGGAC 60.435 66.667 0.00 0.00 37.02 3.85
1920 1965 1.066303 CTTCCTCCTTGATCTCGTCGG 59.934 57.143 0.00 0.00 0.00 4.79
2087 2135 1.338973 CCAGCAGCTTCTTGCAAAAGA 59.661 47.619 19.18 5.00 46.47 2.52
2130 2178 1.740296 CGCACGGGGAGTTAACTGG 60.740 63.158 14.14 2.07 0.00 4.00
2156 2204 2.311124 ACAATCAGTTAGGTAGGCGC 57.689 50.000 0.00 0.00 0.00 6.53
2195 2247 5.059221 GTGCACGCAAATTCAAATACAGTAC 59.941 40.000 0.00 0.00 0.00 2.73
2196 2248 5.150683 GTGCACGCAAATTCAAATACAGTA 58.849 37.500 0.00 0.00 0.00 2.74
2197 2249 3.980775 GTGCACGCAAATTCAAATACAGT 59.019 39.130 0.00 0.00 0.00 3.55
2198 2250 3.980134 TGTGCACGCAAATTCAAATACAG 59.020 39.130 13.13 0.00 0.00 2.74
2199 2251 3.969899 TGTGCACGCAAATTCAAATACA 58.030 36.364 13.13 0.00 0.00 2.29
2200 2252 3.181541 GCTGTGCACGCAAATTCAAATAC 60.182 43.478 22.75 0.00 0.00 1.89
2255 2307 1.130777 ATGCACCAGGTTGCCTTTTT 58.869 45.000 10.46 0.00 42.25 1.94
2256 2308 0.393820 CATGCACCAGGTTGCCTTTT 59.606 50.000 10.46 0.00 42.25 2.27
2257 2309 0.760189 ACATGCACCAGGTTGCCTTT 60.760 50.000 10.46 0.00 42.25 3.11
2258 2310 0.112218 TACATGCACCAGGTTGCCTT 59.888 50.000 10.46 0.00 42.25 4.35
2259 2311 0.322816 CTACATGCACCAGGTTGCCT 60.323 55.000 10.46 0.15 42.25 4.75
2260 2312 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2261 2313 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2262 2314 1.538047 AAGCTACATGCACCAGGTTG 58.462 50.000 7.46 0.00 45.94 3.77
2263 2315 2.292828 AAAGCTACATGCACCAGGTT 57.707 45.000 0.00 0.00 45.94 3.50
2264 2316 2.618045 GGTAAAGCTACATGCACCAGGT 60.618 50.000 0.00 0.00 45.94 4.00
2265 2317 2.017049 GGTAAAGCTACATGCACCAGG 58.983 52.381 0.00 0.00 45.94 4.45
2266 2318 2.420022 GTGGTAAAGCTACATGCACCAG 59.580 50.000 0.00 0.00 43.15 4.00
2267 2319 2.039746 AGTGGTAAAGCTACATGCACCA 59.960 45.455 0.00 0.00 45.94 4.17
2268 2320 2.420022 CAGTGGTAAAGCTACATGCACC 59.580 50.000 0.00 0.00 45.94 5.01
2269 2321 2.159517 GCAGTGGTAAAGCTACATGCAC 60.160 50.000 0.00 0.00 45.94 4.57
2270 2322 2.083774 GCAGTGGTAAAGCTACATGCA 58.916 47.619 0.00 0.00 45.94 3.96
2271 2323 1.062587 CGCAGTGGTAAAGCTACATGC 59.937 52.381 0.00 0.00 43.29 4.06
2272 2324 1.062587 GCGCAGTGGTAAAGCTACATG 59.937 52.381 0.30 0.00 0.00 3.21
2273 2325 1.369625 GCGCAGTGGTAAAGCTACAT 58.630 50.000 0.30 0.00 0.00 2.29
2274 2326 0.672401 GGCGCAGTGGTAAAGCTACA 60.672 55.000 10.83 0.00 0.00 2.74
2275 2327 0.672401 TGGCGCAGTGGTAAAGCTAC 60.672 55.000 10.83 0.00 0.00 3.58
2276 2328 0.035598 TTGGCGCAGTGGTAAAGCTA 59.964 50.000 10.83 0.00 0.00 3.32
2277 2329 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
2278 2330 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
2279 2331 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
2280 2332 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
2281 2333 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
2282 2334 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
2291 2343 1.984288 ATACGAAGGGGAGCCTTGGC 61.984 60.000 2.97 2.97 0.00 4.52
2292 2344 0.179045 CATACGAAGGGGAGCCTTGG 60.179 60.000 0.00 0.00 0.00 3.61
2293 2345 0.830648 TCATACGAAGGGGAGCCTTG 59.169 55.000 0.00 0.00 0.00 3.61
2294 2346 1.123928 CTCATACGAAGGGGAGCCTT 58.876 55.000 0.00 0.00 0.00 4.35
2295 2347 0.261991 TCTCATACGAAGGGGAGCCT 59.738 55.000 0.00 0.00 0.00 4.58
2296 2348 1.120530 TTCTCATACGAAGGGGAGCC 58.879 55.000 0.00 0.00 0.00 4.70
2297 2349 2.937149 GTTTTCTCATACGAAGGGGAGC 59.063 50.000 0.00 0.00 0.00 4.70
2298 2350 3.055385 TGGTTTTCTCATACGAAGGGGAG 60.055 47.826 0.00 0.00 0.00 4.30
2299 2351 2.907696 TGGTTTTCTCATACGAAGGGGA 59.092 45.455 0.00 0.00 0.00 4.81
2300 2352 3.343941 TGGTTTTCTCATACGAAGGGG 57.656 47.619 0.00 0.00 0.00 4.79
2301 2353 5.414454 TCATTTGGTTTTCTCATACGAAGGG 59.586 40.000 0.00 0.00 0.00 3.95
2302 2354 6.494893 TCATTTGGTTTTCTCATACGAAGG 57.505 37.500 0.00 0.00 0.00 3.46
2303 2355 8.853345 CATTTCATTTGGTTTTCTCATACGAAG 58.147 33.333 0.00 0.00 0.00 3.79
2304 2356 8.356657 ACATTTCATTTGGTTTTCTCATACGAA 58.643 29.630 0.00 0.00 0.00 3.85
2305 2357 7.881142 ACATTTCATTTGGTTTTCTCATACGA 58.119 30.769 0.00 0.00 0.00 3.43
2347 2402 4.754322 TGCAGACAACACACACGATATAT 58.246 39.130 0.00 0.00 0.00 0.86
2352 2407 1.006086 CTTGCAGACAACACACACGA 58.994 50.000 0.00 0.00 0.00 4.35
2400 2456 7.707104 TGTTTCTGAGAAAGAAGACCAAATTC 58.293 34.615 8.06 0.00 45.64 2.17
2437 2493 6.152492 AGAGATTTCCCTTCTTCATTTCTTGC 59.848 38.462 0.00 0.00 0.00 4.01
2493 2550 3.306710 GGAAAAGGGAAAACGGAATGCAT 60.307 43.478 0.00 0.00 0.00 3.96
2612 2674 1.066002 CCGTCATTTCACCATCCATGC 59.934 52.381 0.00 0.00 0.00 4.06
2642 2704 6.043411 AGATTCCTGACGTGAAATTACTAGC 58.957 40.000 0.00 0.00 0.00 3.42
2692 2754 2.158449 CCAGCGAGTGATGTGTTTCTTC 59.842 50.000 0.00 0.00 0.00 2.87
2698 2760 1.293498 GACCCAGCGAGTGATGTGT 59.707 57.895 0.00 0.00 0.00 3.72
2706 2768 3.367806 CCACTATATGATGACCCAGCGAG 60.368 52.174 0.00 0.00 0.00 5.03
2709 2771 4.679106 CGATCCACTATATGATGACCCAGC 60.679 50.000 0.00 0.00 0.00 4.85
2747 2809 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2748 2810 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2749 2811 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2750 2812 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2751 2813 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2752 2814 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2753 2815 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
2754 2816 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2755 2817 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
2756 2818 3.181530 CCTGCGACAAGTAATTCAGAACG 60.182 47.826 0.00 0.00 0.00 3.95
2757 2819 3.746492 ACCTGCGACAAGTAATTCAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
2758 2820 4.002906 ACCTGCGACAAGTAATTCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
2759 2821 3.678056 ACCTGCGACAAGTAATTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
2760 2822 4.271049 CCATACCTGCGACAAGTAATTCAG 59.729 45.833 0.00 0.00 0.00 3.02
2761 2823 4.081365 TCCATACCTGCGACAAGTAATTCA 60.081 41.667 0.00 0.00 0.00 2.57
2762 2824 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
2763 2825 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
2764 2826 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
2765 2827 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
2766 2828 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
2767 2829 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
2768 2830 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
2769 2831 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
2770 2832 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
2771 2833 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
2772 2834 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
2773 2835 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
2774 2836 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
2800 2862 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
2801 2863 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
2802 2864 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
2803 2865 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
2804 2866 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
2805 2867 6.183360 TGTCGCAGAAATGGATGTATCTAGAA 60.183 38.462 0.00 0.00 39.69 2.10
2806 2868 5.301805 TGTCGCAGAAATGGATGTATCTAGA 59.698 40.000 0.00 0.00 39.69 2.43
2807 2869 5.532557 TGTCGCAGAAATGGATGTATCTAG 58.467 41.667 0.00 0.00 39.69 2.43
2808 2870 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
2809 2871 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
2810 2872 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
2811 2873 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
2812 2874 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
2813 2875 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
2814 2876 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
2815 2877 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
2816 2878 5.957842 AAATTACTTGTCGCAGAAATGGA 57.042 34.783 0.00 0.00 39.69 3.41
2817 2879 7.072177 TCTAAATTACTTGTCGCAGAAATGG 57.928 36.000 0.00 0.00 39.69 3.16
2818 2880 7.214449 CGTTCTAAATTACTTGTCGCAGAAATG 59.786 37.037 0.00 0.00 39.69 2.32
2819 2881 7.234384 CGTTCTAAATTACTTGTCGCAGAAAT 58.766 34.615 0.00 0.00 39.69 2.17
2820 2882 6.347079 CCGTTCTAAATTACTTGTCGCAGAAA 60.347 38.462 0.00 0.00 39.69 2.52
2821 2883 5.119588 CCGTTCTAAATTACTTGTCGCAGAA 59.880 40.000 0.00 0.00 39.69 3.02
2822 2884 4.624024 CCGTTCTAAATTACTTGTCGCAGA 59.376 41.667 0.00 0.00 0.00 4.26
2823 2885 4.624024 TCCGTTCTAAATTACTTGTCGCAG 59.376 41.667 0.00 0.00 0.00 5.18
2824 2886 4.558178 TCCGTTCTAAATTACTTGTCGCA 58.442 39.130 0.00 0.00 0.00 5.10
2825 2887 4.860907 TCTCCGTTCTAAATTACTTGTCGC 59.139 41.667 0.00 0.00 0.00 5.19
2826 2888 6.320171 TCTCTCCGTTCTAAATTACTTGTCG 58.680 40.000 0.00 0.00 0.00 4.35
2827 2889 7.314393 ACTCTCTCCGTTCTAAATTACTTGTC 58.686 38.462 0.00 0.00 0.00 3.18
2828 2890 7.229581 ACTCTCTCCGTTCTAAATTACTTGT 57.770 36.000 0.00 0.00 0.00 3.16
2829 2891 9.239002 CATACTCTCTCCGTTCTAAATTACTTG 57.761 37.037 0.00 0.00 0.00 3.16
2830 2892 8.968969 ACATACTCTCTCCGTTCTAAATTACTT 58.031 33.333 0.00 0.00 0.00 2.24
2831 2893 8.407064 CACATACTCTCTCCGTTCTAAATTACT 58.593 37.037 0.00 0.00 0.00 2.24
2832 2894 7.167801 GCACATACTCTCTCCGTTCTAAATTAC 59.832 40.741 0.00 0.00 0.00 1.89
2833 2895 7.201145 GCACATACTCTCTCCGTTCTAAATTA 58.799 38.462 0.00 0.00 0.00 1.40
2834 2896 6.043411 GCACATACTCTCTCCGTTCTAAATT 58.957 40.000 0.00 0.00 0.00 1.82
2835 2897 5.593010 GCACATACTCTCTCCGTTCTAAAT 58.407 41.667 0.00 0.00 0.00 1.40
2836 2898 4.438336 CGCACATACTCTCTCCGTTCTAAA 60.438 45.833 0.00 0.00 0.00 1.85
2837 2899 3.064958 CGCACATACTCTCTCCGTTCTAA 59.935 47.826 0.00 0.00 0.00 2.10
2838 2900 2.612672 CGCACATACTCTCTCCGTTCTA 59.387 50.000 0.00 0.00 0.00 2.10
2839 2901 1.402259 CGCACATACTCTCTCCGTTCT 59.598 52.381 0.00 0.00 0.00 3.01
2840 2902 1.132643 ACGCACATACTCTCTCCGTTC 59.867 52.381 0.00 0.00 0.00 3.95
2841 2903 1.135373 CACGCACATACTCTCTCCGTT 60.135 52.381 0.00 0.00 0.00 4.44
2842 2904 0.452184 CACGCACATACTCTCTCCGT 59.548 55.000 0.00 0.00 0.00 4.69
2843 2905 0.733150 TCACGCACATACTCTCTCCG 59.267 55.000 0.00 0.00 0.00 4.63
2844 2906 3.610585 GCTATCACGCACATACTCTCTCC 60.611 52.174 0.00 0.00 0.00 3.71
2845 2907 3.252215 AGCTATCACGCACATACTCTCTC 59.748 47.826 0.00 0.00 0.00 3.20
2846 2908 3.004210 CAGCTATCACGCACATACTCTCT 59.996 47.826 0.00 0.00 0.00 3.10
2847 2909 3.003793 TCAGCTATCACGCACATACTCTC 59.996 47.826 0.00 0.00 0.00 3.20
2848 2910 2.952310 TCAGCTATCACGCACATACTCT 59.048 45.455 0.00 0.00 0.00 3.24
2849 2911 3.355626 TCAGCTATCACGCACATACTC 57.644 47.619 0.00 0.00 0.00 2.59
2850 2912 3.305676 GGATCAGCTATCACGCACATACT 60.306 47.826 0.00 0.00 36.20 2.12
2851 2913 2.989840 GGATCAGCTATCACGCACATAC 59.010 50.000 0.00 0.00 36.20 2.39
2852 2914 2.893489 AGGATCAGCTATCACGCACATA 59.107 45.455 0.00 0.00 36.20 2.29
2853 2915 1.690893 AGGATCAGCTATCACGCACAT 59.309 47.619 0.00 0.00 36.20 3.21
2854 2916 1.114627 AGGATCAGCTATCACGCACA 58.885 50.000 0.00 0.00 36.20 4.57
2855 2917 2.231215 AAGGATCAGCTATCACGCAC 57.769 50.000 0.00 0.00 36.20 5.34
2856 2918 2.432146 AGAAAGGATCAGCTATCACGCA 59.568 45.455 0.00 0.00 36.20 5.24
2857 2919 3.056304 GAGAAAGGATCAGCTATCACGC 58.944 50.000 0.00 0.00 36.20 5.34
2858 2920 4.037327 TCTGAGAAAGGATCAGCTATCACG 59.963 45.833 0.00 0.00 43.20 4.35
2859 2921 5.163468 TGTCTGAGAAAGGATCAGCTATCAC 60.163 44.000 0.00 0.00 43.20 3.06
2860 2922 4.958581 TGTCTGAGAAAGGATCAGCTATCA 59.041 41.667 0.00 0.00 43.20 2.15
2861 2923 5.163468 TGTGTCTGAGAAAGGATCAGCTATC 60.163 44.000 0.00 0.00 43.20 2.08
2866 2928 4.797800 TCTGTGTCTGAGAAAGGATCAG 57.202 45.455 0.00 0.00 44.57 2.90
2869 2931 6.537355 TGAAATTCTGTGTCTGAGAAAGGAT 58.463 36.000 0.00 0.00 33.22 3.24
2871 2933 5.762218 ACTGAAATTCTGTGTCTGAGAAAGG 59.238 40.000 4.71 0.00 33.22 3.11
2924 2988 3.274288 CTTTGCTCTTGTGGGTCCTATC 58.726 50.000 0.00 0.00 0.00 2.08
2925 2989 2.619074 GCTTTGCTCTTGTGGGTCCTAT 60.619 50.000 0.00 0.00 0.00 2.57
2931 3003 1.321474 TTCTGCTTTGCTCTTGTGGG 58.679 50.000 0.00 0.00 0.00 4.61
2936 3008 5.877564 GGAAGTAGTATTCTGCTTTGCTCTT 59.122 40.000 4.29 0.00 44.32 2.85
2943 3015 4.024670 ACGGAGGAAGTAGTATTCTGCTT 58.975 43.478 2.38 2.38 46.29 3.91
2992 3067 7.704789 AAGGACGTTTTTAACACTACACTAG 57.295 36.000 0.00 0.00 0.00 2.57
2999 3074 9.902196 CCAAAATATAAGGACGTTTTTAACACT 57.098 29.630 0.00 0.00 0.00 3.55
3000 3075 9.896263 TCCAAAATATAAGGACGTTTTTAACAC 57.104 29.630 0.00 0.00 0.00 3.32
3005 3080 8.852135 TCTGTTCCAAAATATAAGGACGTTTTT 58.148 29.630 0.00 0.00 0.00 1.94
3009 3084 6.113411 CCTCTGTTCCAAAATATAAGGACGT 58.887 40.000 0.00 0.00 0.00 4.34
3010 3085 5.527582 CCCTCTGTTCCAAAATATAAGGACG 59.472 44.000 0.00 0.00 0.00 4.79
3011 3086 6.659824 TCCCTCTGTTCCAAAATATAAGGAC 58.340 40.000 0.00 0.00 0.00 3.85
3012 3087 6.447084 ACTCCCTCTGTTCCAAAATATAAGGA 59.553 38.462 0.00 0.00 0.00 3.36
3013 3088 6.663734 ACTCCCTCTGTTCCAAAATATAAGG 58.336 40.000 0.00 0.00 0.00 2.69
3014 3089 8.487028 AGTACTCCCTCTGTTCCAAAATATAAG 58.513 37.037 0.00 0.00 0.00 1.73
3018 3093 6.296259 GGAAGTACTCCCTCTGTTCCAAAATA 60.296 42.308 0.00 0.00 38.44 1.40
3020 3095 4.202430 GGAAGTACTCCCTCTGTTCCAAAA 60.202 45.833 0.00 0.00 38.44 2.44
3023 3098 2.111972 AGGAAGTACTCCCTCTGTTCCA 59.888 50.000 0.00 0.00 46.81 3.53
3024 3099 2.822697 AGGAAGTACTCCCTCTGTTCC 58.177 52.381 0.00 0.00 46.81 3.62
3027 3102 3.579151 GACAAAGGAAGTACTCCCTCTGT 59.421 47.826 6.86 6.86 46.81 3.41
3028 3103 3.835395 AGACAAAGGAAGTACTCCCTCTG 59.165 47.826 0.00 0.00 46.81 3.35
3029 3104 4.090819 GAGACAAAGGAAGTACTCCCTCT 58.909 47.826 0.00 0.00 46.81 3.69
3030 3105 3.833070 TGAGACAAAGGAAGTACTCCCTC 59.167 47.826 0.00 4.78 46.81 4.30
3031 3106 3.858135 TGAGACAAAGGAAGTACTCCCT 58.142 45.455 0.00 0.00 46.81 4.20
3032 3107 4.828072 ATGAGACAAAGGAAGTACTCCC 57.172 45.455 0.00 0.00 46.81 4.30
3058 3133 9.973450 TTTATGTTAGCTTGCAAAAATGTCTTA 57.027 25.926 0.00 0.00 0.00 2.10
3059 3134 8.885494 TTTATGTTAGCTTGCAAAAATGTCTT 57.115 26.923 0.00 0.00 0.00 3.01
3060 3135 9.492973 AATTTATGTTAGCTTGCAAAAATGTCT 57.507 25.926 0.00 0.00 0.00 3.41
3061 3136 9.532697 CAATTTATGTTAGCTTGCAAAAATGTC 57.467 29.630 0.00 0.00 0.00 3.06
3062 3137 8.016801 GCAATTTATGTTAGCTTGCAAAAATGT 58.983 29.630 0.00 0.00 41.33 2.71
3063 3138 8.016229 TGCAATTTATGTTAGCTTGCAAAAATG 58.984 29.630 0.00 0.00 46.44 2.32
3064 3139 8.097078 TGCAATTTATGTTAGCTTGCAAAAAT 57.903 26.923 0.00 0.00 46.44 1.82
3065 3140 7.488187 TGCAATTTATGTTAGCTTGCAAAAA 57.512 28.000 0.00 0.00 46.44 1.94
3070 3145 6.516017 CGTTTTTGCAATTTATGTTAGCTTGC 59.484 34.615 0.00 0.00 41.88 4.01
3071 3146 7.563270 ACGTTTTTGCAATTTATGTTAGCTTG 58.437 30.769 0.00 0.00 0.00 4.01
3072 3147 7.707774 ACGTTTTTGCAATTTATGTTAGCTT 57.292 28.000 0.00 0.00 0.00 3.74
3073 3148 7.651704 AGAACGTTTTTGCAATTTATGTTAGCT 59.348 29.630 0.46 0.00 0.00 3.32
3074 3149 7.783209 AGAACGTTTTTGCAATTTATGTTAGC 58.217 30.769 0.46 0.00 0.00 3.09
3091 3166 9.712305 CCCTTCATCTCATAATATAGAACGTTT 57.288 33.333 0.46 0.00 0.00 3.60
3092 3167 9.090103 TCCCTTCATCTCATAATATAGAACGTT 57.910 33.333 0.00 0.00 0.00 3.99
3093 3168 8.651589 TCCCTTCATCTCATAATATAGAACGT 57.348 34.615 0.00 0.00 0.00 3.99
3094 3169 8.744652 ACTCCCTTCATCTCATAATATAGAACG 58.255 37.037 0.00 0.00 0.00 3.95
3105 3180 9.566432 GATTATTTGTTACTCCCTTCATCTCAT 57.434 33.333 0.00 0.00 0.00 2.90
3111 3186 6.884295 CACCAGATTATTTGTTACTCCCTTCA 59.116 38.462 0.00 0.00 0.00 3.02
3116 3191 8.837389 GGATTACACCAGATTATTTGTTACTCC 58.163 37.037 0.00 0.00 0.00 3.85
3146 3224 4.489810 GAGTATTAGCTATCGCACATGCT 58.510 43.478 1.82 0.00 39.10 3.79
3152 3230 6.775594 ACATATGGAGTATTAGCTATCGCA 57.224 37.500 7.80 0.00 39.10 5.10
3159 3237 7.980099 GGTGGTACATACATATGGAGTATTAGC 59.020 40.741 7.80 6.17 44.52 3.09
3162 3240 7.865530 TGGTGGTACATACATATGGAGTATT 57.134 36.000 7.80 0.00 44.52 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.