Multiple sequence alignment - TraesCS7A01G327300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G327300 chr7A 100.000 3711 0 0 1 3711 475770401 475774111 0.000000e+00 6854
1 TraesCS7A01G327300 chr7A 100.000 181 0 0 4309 4489 475774709 475774889 7.200000e-88 335
2 TraesCS7A01G327300 chr7D 92.227 2946 177 32 783 3710 413690365 413693276 0.000000e+00 4124
3 TraesCS7A01G327300 chr7D 93.825 583 34 1 56 638 413689706 413690286 0.000000e+00 876
4 TraesCS7A01G327300 chr7B 91.326 2859 174 37 877 3711 428093226 428096034 0.000000e+00 3838
5 TraesCS7A01G327300 chr7B 90.000 580 39 5 65 638 428092538 428093104 0.000000e+00 732
6 TraesCS7A01G327300 chr2A 94.350 177 9 1 4309 4485 594072826 594072651 2.060000e-68 270
7 TraesCS7A01G327300 chr1B 93.220 177 12 0 4309 4485 660941381 660941557 1.240000e-65 261
8 TraesCS7A01G327300 chr4A 92.308 182 12 2 4309 4489 30804586 30804766 1.600000e-64 257
9 TraesCS7A01G327300 chr4A 86.111 108 15 0 2976 3083 3063966 3063859 2.840000e-22 117
10 TraesCS7A01G327300 chrUn 92.655 177 13 0 4309 4485 74363054 74362878 5.760000e-64 255
11 TraesCS7A01G327300 chr5A 92.655 177 13 0 4309 4485 407947872 407948048 5.760000e-64 255
12 TraesCS7A01G327300 chr5A 92.090 177 14 0 4309 4485 375570643 375570467 2.680000e-62 250
13 TraesCS7A01G327300 chr6B 92.090 177 14 0 4309 4485 719339459 719339635 2.680000e-62 250
14 TraesCS7A01G327300 chr5B 92.090 177 14 0 4309 4485 478548957 478549133 2.680000e-62 250
15 TraesCS7A01G327300 chr3A 92.090 177 13 1 4309 4485 598940100 598939925 9.640000e-62 248
16 TraesCS7A01G327300 chr4B 84.058 138 22 0 2745 2882 587161965 587162102 2.820000e-27 134
17 TraesCS7A01G327300 chr4B 86.667 105 14 0 2976 3080 586933972 586934076 2.840000e-22 117
18 TraesCS7A01G327300 chr4B 85.859 99 14 0 2976 3074 587162463 587162561 6.140000e-19 106
19 TraesCS7A01G327300 chr4D 86.667 105 14 0 2976 3080 468421493 468421597 2.840000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G327300 chr7A 475770401 475774889 4488 False 3594.5 6854 100.000 1 4489 2 chr7A.!!$F1 4488
1 TraesCS7A01G327300 chr7D 413689706 413693276 3570 False 2500.0 4124 93.026 56 3710 2 chr7D.!!$F1 3654
2 TraesCS7A01G327300 chr7B 428092538 428096034 3496 False 2285.0 3838 90.663 65 3711 2 chr7B.!!$F1 3646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 834 0.038159 GCTAGTTCAGACGCCACTGT 60.038 55.0 0.00 0.00 38.79 3.55 F
826 840 0.249447 TCAGACGCCACTGTGTTCTG 60.249 55.0 18.26 18.26 38.79 3.02 F
1820 1853 0.392461 TTGCAGTGATAGGAACGGCC 60.392 55.0 0.00 0.00 37.86 6.13 F
3053 3097 0.322816 GCAGCAGGAACAAGATGGGA 60.323 55.0 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 1878 0.826672 ACTCCGATCCATACCGGGAC 60.827 60.000 6.32 0.0 45.36 4.46 R
2103 2142 1.005215 CCCTTCATCACCTCCTTTGCT 59.995 52.381 0.00 0.0 0.00 3.91 R
3344 3388 0.893727 TGAGGTAGACGACAGCAGCA 60.894 55.000 0.00 0.0 0.00 4.41 R
4458 4504 0.108019 GTCCAACCCTCAAACCGTCT 59.892 55.000 0.00 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.803642 GGTAATCGTTACATCTTAGGTCTGT 58.196 40.000 9.18 0.00 37.88 3.41
25 26 6.696148 GGTAATCGTTACATCTTAGGTCTGTG 59.304 42.308 9.18 0.00 37.88 3.66
26 27 4.106029 TCGTTACATCTTAGGTCTGTGC 57.894 45.455 0.00 0.00 0.00 4.57
27 28 2.852413 CGTTACATCTTAGGTCTGTGCG 59.148 50.000 0.00 0.00 0.00 5.34
28 29 2.579207 TACATCTTAGGTCTGTGCGC 57.421 50.000 0.00 0.00 0.00 6.09
29 30 0.608130 ACATCTTAGGTCTGTGCGCA 59.392 50.000 5.66 5.66 0.00 6.09
30 31 1.284657 CATCTTAGGTCTGTGCGCAG 58.715 55.000 21.43 21.43 43.87 5.18
31 32 0.176680 ATCTTAGGTCTGTGCGCAGG 59.823 55.000 26.23 7.23 42.78 4.85
32 33 1.448540 CTTAGGTCTGTGCGCAGGG 60.449 63.158 26.23 6.79 42.78 4.45
33 34 2.172483 CTTAGGTCTGTGCGCAGGGT 62.172 60.000 26.23 13.66 42.78 4.34
34 35 2.167398 TTAGGTCTGTGCGCAGGGTC 62.167 60.000 26.23 16.23 42.78 4.46
42 43 3.747976 GCGCAGGGTCGGCATTTT 61.748 61.111 0.30 0.00 0.00 1.82
43 44 2.179018 CGCAGGGTCGGCATTTTG 59.821 61.111 0.00 0.00 0.00 2.44
44 45 2.331893 CGCAGGGTCGGCATTTTGA 61.332 57.895 0.00 0.00 0.00 2.69
45 46 1.212751 GCAGGGTCGGCATTTTGAC 59.787 57.895 0.00 0.00 0.00 3.18
50 51 1.212751 GTCGGCATTTTGACCCAGC 59.787 57.895 0.00 0.00 0.00 4.85
51 52 2.179018 CGGCATTTTGACCCAGCG 59.821 61.111 0.00 0.00 0.00 5.18
52 53 2.625823 CGGCATTTTGACCCAGCGT 61.626 57.895 0.00 0.00 0.00 5.07
53 54 1.080569 GGCATTTTGACCCAGCGTG 60.081 57.895 0.00 0.00 0.00 5.34
54 55 1.734117 GCATTTTGACCCAGCGTGC 60.734 57.895 0.00 0.00 0.00 5.34
74 75 2.584791 CAAATTCCGCGACAAAAGGAG 58.415 47.619 8.23 0.00 35.23 3.69
89 91 4.442375 AAAGGAGACGTCATACTGTGAG 57.558 45.455 19.50 0.00 37.56 3.51
166 168 4.185059 GGGACGAGACGCCCGTAC 62.185 72.222 0.00 0.00 40.67 3.67
236 238 3.489908 CCTTCGACATGTCATCGTCTCAT 60.490 47.826 24.93 0.00 40.50 2.90
239 241 1.863454 GACATGTCATCGTCTCATGGC 59.137 52.381 21.07 2.43 41.91 4.40
336 338 2.411290 CCACAAAACCGTTGCGCT 59.589 55.556 9.73 0.00 0.00 5.92
433 435 2.484264 GGATCTCAGGTGTTTCCAAACG 59.516 50.000 0.00 0.00 41.74 3.60
436 438 1.873591 CTCAGGTGTTTCCAAACGGAG 59.126 52.381 0.00 0.00 41.74 4.63
446 448 1.203052 TCCAAACGGAGTACCATCGAC 59.797 52.381 7.03 0.00 45.00 4.20
499 507 3.775654 CTCCTCCACCTCCACCGC 61.776 72.222 0.00 0.00 0.00 5.68
536 544 3.447586 TGTTCCTTAGATCGGAGTTCCAG 59.552 47.826 0.00 0.00 35.14 3.86
574 582 1.090052 GTGCCCTCGCTCGCTTATTT 61.090 55.000 0.00 0.00 35.36 1.40
584 592 3.484229 CGCTCGCTTATTTCTGACCTTTG 60.484 47.826 0.00 0.00 0.00 2.77
585 593 3.437049 GCTCGCTTATTTCTGACCTTTGT 59.563 43.478 0.00 0.00 0.00 2.83
595 603 0.102663 TGACCTTTGTACGCGTCACA 59.897 50.000 18.63 16.02 30.52 3.58
638 646 4.557695 GCATCAATCGTCGATACTTCTCCT 60.558 45.833 8.43 0.00 0.00 3.69
639 647 4.815040 TCAATCGTCGATACTTCTCCTC 57.185 45.455 8.43 0.00 0.00 3.71
640 648 3.564644 TCAATCGTCGATACTTCTCCTCC 59.435 47.826 8.43 0.00 0.00 4.30
641 649 1.579698 TCGTCGATACTTCTCCTCCG 58.420 55.000 0.00 0.00 0.00 4.63
642 650 0.587285 CGTCGATACTTCTCCTCCGG 59.413 60.000 0.00 0.00 0.00 5.14
643 651 0.311477 GTCGATACTTCTCCTCCGGC 59.689 60.000 0.00 0.00 0.00 6.13
644 652 1.164662 TCGATACTTCTCCTCCGGCG 61.165 60.000 0.00 0.00 0.00 6.46
645 653 1.164662 CGATACTTCTCCTCCGGCGA 61.165 60.000 9.30 0.00 0.00 5.54
646 654 1.249407 GATACTTCTCCTCCGGCGAT 58.751 55.000 9.30 0.00 0.00 4.58
647 655 1.200484 GATACTTCTCCTCCGGCGATC 59.800 57.143 9.30 0.00 0.00 3.69
648 656 1.164662 TACTTCTCCTCCGGCGATCG 61.165 60.000 11.69 11.69 38.88 3.69
649 657 2.439701 TTCTCCTCCGGCGATCGT 60.440 61.111 17.81 0.00 37.11 3.73
650 658 2.395367 CTTCTCCTCCGGCGATCGTC 62.395 65.000 17.81 14.29 37.11 4.20
651 659 4.315122 CTCCTCCGGCGATCGTCG 62.315 72.222 33.49 33.49 43.89 5.12
660 668 2.503158 CGATCGTCGCACGGTTGA 60.503 61.111 7.03 0.00 38.34 3.18
661 669 2.497092 CGATCGTCGCACGGTTGAG 61.497 63.158 7.03 0.00 38.34 3.02
662 670 1.443872 GATCGTCGCACGGTTGAGT 60.444 57.895 8.46 0.00 42.81 3.41
663 671 0.179181 GATCGTCGCACGGTTGAGTA 60.179 55.000 8.46 0.00 42.81 2.59
664 672 0.455633 ATCGTCGCACGGTTGAGTAC 60.456 55.000 8.46 0.00 42.81 2.73
665 673 1.081641 CGTCGCACGGTTGAGTACT 60.082 57.895 0.00 0.00 38.08 2.73
666 674 0.662374 CGTCGCACGGTTGAGTACTT 60.662 55.000 0.00 0.00 38.08 2.24
667 675 1.058404 GTCGCACGGTTGAGTACTTC 58.942 55.000 0.00 0.00 0.00 3.01
693 701 1.605457 CGTGCACTTGCCTCTCTGTTA 60.605 52.381 16.19 0.00 41.18 2.41
714 728 3.068691 CGCTCCCCTGTTCCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
715 729 2.896443 GCTCCCCTGTTCCTCGAG 59.104 66.667 5.13 5.13 0.00 4.04
719 733 0.408309 TCCCCTGTTCCTCGAGAAGA 59.592 55.000 15.71 0.00 34.29 2.87
730 744 3.528370 GAGAAGAGCCGCCGCCTA 61.528 66.667 0.00 0.00 34.57 3.93
738 752 1.446272 GCCGCCGCCTATATCAGTC 60.446 63.158 0.00 0.00 0.00 3.51
740 754 1.583495 CCGCCGCCTATATCAGTCGA 61.583 60.000 0.00 0.00 0.00 4.20
742 756 0.882474 GCCGCCTATATCAGTCGAGT 59.118 55.000 0.00 0.00 0.00 4.18
743 757 2.082231 GCCGCCTATATCAGTCGAGTA 58.918 52.381 0.00 0.00 0.00 2.59
745 759 3.597255 CCGCCTATATCAGTCGAGTAGA 58.403 50.000 0.00 0.00 0.00 2.59
746 760 4.193090 CCGCCTATATCAGTCGAGTAGAT 58.807 47.826 0.00 1.66 0.00 1.98
747 761 4.034626 CCGCCTATATCAGTCGAGTAGATG 59.965 50.000 12.59 0.00 0.00 2.90
748 762 4.632251 CGCCTATATCAGTCGAGTAGATGT 59.368 45.833 12.59 9.73 0.00 3.06
749 763 5.811100 CGCCTATATCAGTCGAGTAGATGTA 59.189 44.000 12.59 10.18 0.00 2.29
750 764 6.313164 CGCCTATATCAGTCGAGTAGATGTAA 59.687 42.308 12.59 0.00 0.00 2.41
751 765 7.464844 CGCCTATATCAGTCGAGTAGATGTAAG 60.465 44.444 12.59 7.53 0.00 2.34
752 766 7.677747 GCCTATATCAGTCGAGTAGATGTAAGC 60.678 44.444 12.59 11.66 0.00 3.09
753 767 7.551262 CCTATATCAGTCGAGTAGATGTAAGCT 59.449 40.741 12.59 0.00 35.48 3.74
754 768 5.682943 ATCAGTCGAGTAGATGTAAGCTC 57.317 43.478 0.00 0.00 30.71 4.09
755 769 3.878103 TCAGTCGAGTAGATGTAAGCTCC 59.122 47.826 0.00 0.00 30.71 4.70
756 770 3.628032 CAGTCGAGTAGATGTAAGCTCCA 59.372 47.826 0.00 0.00 30.71 3.86
757 771 3.628487 AGTCGAGTAGATGTAAGCTCCAC 59.372 47.826 0.00 0.00 30.71 4.02
758 772 2.612672 TCGAGTAGATGTAAGCTCCACG 59.387 50.000 0.00 0.00 30.71 4.94
759 773 2.355132 CGAGTAGATGTAAGCTCCACGT 59.645 50.000 0.00 0.00 30.71 4.49
760 774 3.558829 CGAGTAGATGTAAGCTCCACGTA 59.441 47.826 0.00 0.00 30.71 3.57
761 775 4.552378 CGAGTAGATGTAAGCTCCACGTAC 60.552 50.000 0.00 0.00 30.71 3.67
762 776 2.846039 AGATGTAAGCTCCACGTACG 57.154 50.000 15.01 15.01 36.16 3.67
763 777 1.404391 AGATGTAAGCTCCACGTACGG 59.596 52.381 21.06 8.46 36.16 4.02
764 778 0.179119 ATGTAAGCTCCACGTACGGC 60.179 55.000 21.06 13.06 36.16 5.68
765 779 1.213537 GTAAGCTCCACGTACGGCA 59.786 57.895 21.06 1.36 0.00 5.69
766 780 1.074872 GTAAGCTCCACGTACGGCAC 61.075 60.000 21.06 4.74 0.00 5.01
767 781 2.216750 TAAGCTCCACGTACGGCACC 62.217 60.000 21.06 3.75 0.00 5.01
768 782 4.367023 GCTCCACGTACGGCACCA 62.367 66.667 21.06 0.00 0.00 4.17
769 783 2.577059 CTCCACGTACGGCACCAT 59.423 61.111 21.06 0.00 0.00 3.55
770 784 1.079405 CTCCACGTACGGCACCATT 60.079 57.895 21.06 0.00 0.00 3.16
771 785 0.173935 CTCCACGTACGGCACCATTA 59.826 55.000 21.06 0.00 0.00 1.90
772 786 0.825410 TCCACGTACGGCACCATTAT 59.175 50.000 21.06 0.00 0.00 1.28
773 787 1.207570 TCCACGTACGGCACCATTATT 59.792 47.619 21.06 0.00 0.00 1.40
774 788 1.595794 CCACGTACGGCACCATTATTC 59.404 52.381 21.06 0.00 0.00 1.75
775 789 2.272678 CACGTACGGCACCATTATTCA 58.727 47.619 21.06 0.00 0.00 2.57
776 790 2.029970 CACGTACGGCACCATTATTCAC 59.970 50.000 21.06 0.00 0.00 3.18
777 791 1.595794 CGTACGGCACCATTATTCACC 59.404 52.381 7.57 0.00 0.00 4.02
778 792 2.740580 CGTACGGCACCATTATTCACCT 60.741 50.000 7.57 0.00 0.00 4.00
779 793 2.038387 ACGGCACCATTATTCACCTC 57.962 50.000 0.00 0.00 0.00 3.85
780 794 1.559682 ACGGCACCATTATTCACCTCT 59.440 47.619 0.00 0.00 0.00 3.69
781 795 2.769663 ACGGCACCATTATTCACCTCTA 59.230 45.455 0.00 0.00 0.00 2.43
782 796 3.131396 CGGCACCATTATTCACCTCTAC 58.869 50.000 0.00 0.00 0.00 2.59
783 797 3.131396 GGCACCATTATTCACCTCTACG 58.869 50.000 0.00 0.00 0.00 3.51
784 798 2.544267 GCACCATTATTCACCTCTACGC 59.456 50.000 0.00 0.00 0.00 4.42
785 799 3.131396 CACCATTATTCACCTCTACGCC 58.869 50.000 0.00 0.00 0.00 5.68
786 800 2.223971 ACCATTATTCACCTCTACGCCG 60.224 50.000 0.00 0.00 0.00 6.46
787 801 1.792949 CATTATTCACCTCTACGCCGC 59.207 52.381 0.00 0.00 0.00 6.53
813 827 4.361827 CGTCCGCTAGTTCAGACG 57.638 61.111 10.15 10.15 45.07 4.18
814 828 1.868251 CGTCCGCTAGTTCAGACGC 60.868 63.158 11.18 0.00 44.61 5.19
820 834 0.038159 GCTAGTTCAGACGCCACTGT 60.038 55.000 0.00 0.00 38.79 3.55
821 835 1.702886 CTAGTTCAGACGCCACTGTG 58.297 55.000 0.00 0.00 38.79 3.66
824 838 0.582005 GTTCAGACGCCACTGTGTTC 59.418 55.000 7.08 0.46 38.79 3.18
825 839 0.464036 TTCAGACGCCACTGTGTTCT 59.536 50.000 7.08 2.81 38.79 3.01
826 840 0.249447 TCAGACGCCACTGTGTTCTG 60.249 55.000 18.26 18.26 38.79 3.02
827 841 1.069765 AGACGCCACTGTGTTCTGG 59.930 57.895 7.08 0.00 34.74 3.86
832 846 3.402186 CCACTGTGTTCTGGCTTGA 57.598 52.632 7.08 0.00 0.00 3.02
833 847 1.901591 CCACTGTGTTCTGGCTTGAT 58.098 50.000 7.08 0.00 0.00 2.57
844 858 3.818787 GCTTGATGCCCGCCACTG 61.819 66.667 0.00 0.00 35.15 3.66
864 878 1.820481 GTCGACCCTAGCGAGCTCT 60.820 63.158 12.85 0.00 38.59 4.09
868 882 1.810794 CGACCCTAGCGAGCTCTCTAA 60.811 57.143 14.12 0.00 0.00 2.10
896 910 2.135933 CTGATCGGGCGTAGATTTTCC 58.864 52.381 0.00 0.00 0.00 3.13
898 912 2.223971 TGATCGGGCGTAGATTTTCCTC 60.224 50.000 0.00 0.00 0.00 3.71
900 914 1.829222 TCGGGCGTAGATTTTCCTCTT 59.171 47.619 0.00 0.00 0.00 2.85
907 921 6.095021 GGGCGTAGATTTTCCTCTTGTAAATT 59.905 38.462 0.00 0.00 0.00 1.82
908 922 7.187480 GGCGTAGATTTTCCTCTTGTAAATTC 58.813 38.462 0.00 0.00 0.00 2.17
910 924 8.234546 GCGTAGATTTTCCTCTTGTAAATTCAA 58.765 33.333 0.00 0.00 0.00 2.69
911 925 9.760660 CGTAGATTTTCCTCTTGTAAATTCAAG 57.239 33.333 1.36 1.36 44.08 3.02
914 928 8.797438 AGATTTTCCTCTTGTAAATTCAAGTCC 58.203 33.333 6.74 0.00 43.44 3.85
915 929 8.712228 ATTTTCCTCTTGTAAATTCAAGTCCT 57.288 30.769 6.74 0.00 43.44 3.85
916 930 9.807921 ATTTTCCTCTTGTAAATTCAAGTCCTA 57.192 29.630 6.74 0.00 43.44 2.94
931 951 7.441890 TCAAGTCCTAGTATCATCGAGATTC 57.558 40.000 0.00 0.00 38.19 2.52
932 952 6.998673 TCAAGTCCTAGTATCATCGAGATTCA 59.001 38.462 0.00 0.00 38.19 2.57
933 953 7.502561 TCAAGTCCTAGTATCATCGAGATTCAA 59.497 37.037 0.00 0.00 38.19 2.69
934 954 8.303156 CAAGTCCTAGTATCATCGAGATTCAAT 58.697 37.037 0.00 0.00 38.19 2.57
935 955 8.050778 AGTCCTAGTATCATCGAGATTCAATC 57.949 38.462 0.00 0.00 38.19 2.67
936 956 7.888021 AGTCCTAGTATCATCGAGATTCAATCT 59.112 37.037 0.00 0.00 43.70 2.40
937 957 9.168451 GTCCTAGTATCATCGAGATTCAATCTA 57.832 37.037 0.00 0.00 40.38 1.98
946 966 9.905171 TCATCGAGATTCAATCTAATCTACAAG 57.095 33.333 0.00 0.00 44.38 3.16
964 986 8.660295 TCTACAAGGATTTTGAAGTACTCCTA 57.340 34.615 0.00 0.00 35.29 2.94
968 990 9.232473 ACAAGGATTTTGAAGTACTCCTATTTC 57.768 33.333 0.00 0.00 35.29 2.17
969 991 8.391106 CAAGGATTTTGAAGTACTCCTATTTCG 58.609 37.037 0.00 0.00 35.29 3.46
970 992 7.621796 AGGATTTTGAAGTACTCCTATTTCGT 58.378 34.615 0.00 0.00 34.59 3.85
971 993 8.101419 AGGATTTTGAAGTACTCCTATTTCGTT 58.899 33.333 0.00 0.00 34.59 3.85
972 994 8.727910 GGATTTTGAAGTACTCCTATTTCGTTT 58.272 33.333 0.00 0.00 0.00 3.60
1075 1097 4.069232 CCGTCGCTGGCCTGAGAA 62.069 66.667 17.32 0.00 0.00 2.87
1077 1099 2.125350 GTCGCTGGCCTGAGAAGG 60.125 66.667 17.32 0.00 0.00 3.46
1082 1104 1.630126 GCTGGCCTGAGAAGGGATGA 61.630 60.000 14.77 0.00 0.00 2.92
1085 1107 1.213678 TGGCCTGAGAAGGGATGATTG 59.786 52.381 3.32 0.00 0.00 2.67
1086 1108 1.316651 GCCTGAGAAGGGATGATTGC 58.683 55.000 0.00 0.00 0.00 3.56
1173 1195 1.364171 CTTGGCCTACCTCGATCCG 59.636 63.158 3.32 0.00 36.63 4.18
1200 1222 5.690464 ACTGTAATGCTCTCTTCTCCATT 57.310 39.130 0.00 0.00 0.00 3.16
1202 1224 6.815089 ACTGTAATGCTCTCTTCTCCATTAG 58.185 40.000 0.00 0.00 32.60 1.73
1214 1236 7.502226 TCTCTTCTCCATTAGTCTCTCTCAATC 59.498 40.741 0.00 0.00 0.00 2.67
1215 1237 7.122048 TCTTCTCCATTAGTCTCTCTCAATCA 58.878 38.462 0.00 0.00 0.00 2.57
1216 1238 6.707440 TCTCCATTAGTCTCTCTCAATCAC 57.293 41.667 0.00 0.00 0.00 3.06
1217 1239 6.190587 TCTCCATTAGTCTCTCTCAATCACA 58.809 40.000 0.00 0.00 0.00 3.58
1218 1240 6.665248 TCTCCATTAGTCTCTCTCAATCACAA 59.335 38.462 0.00 0.00 0.00 3.33
1219 1241 7.344093 TCTCCATTAGTCTCTCTCAATCACAAT 59.656 37.037 0.00 0.00 0.00 2.71
1243 1265 9.453572 AATTCACAACACACATAGTATGATTCT 57.546 29.630 17.13 0.00 0.00 2.40
1344 1366 1.070175 CGTGGTGACCATTTGTTCGTC 60.070 52.381 7.94 0.00 35.28 4.20
1345 1367 2.218603 GTGGTGACCATTTGTTCGTCT 58.781 47.619 7.94 0.00 35.28 4.18
1354 1376 1.752753 TTTGTTCGTCTTGCATTGCG 58.247 45.000 3.84 0.00 0.00 4.85
1355 1377 0.660488 TTGTTCGTCTTGCATTGCGT 59.340 45.000 3.84 0.00 0.00 5.24
1412 1434 1.995376 TTGCTTCCTTCCCTGTTTCC 58.005 50.000 0.00 0.00 0.00 3.13
1441 1463 2.800250 CAGCTCCTTTGGGTGATTCTT 58.200 47.619 0.00 0.00 34.56 2.52
1447 1469 3.521937 TCCTTTGGGTGATTCTTATCGGT 59.478 43.478 0.00 0.00 33.23 4.69
1450 1472 3.819564 TGGGTGATTCTTATCGGTCTG 57.180 47.619 0.00 0.00 33.23 3.51
1513 1535 3.572584 CGTGGTGACAGGTAAGTAAGAC 58.427 50.000 0.00 0.00 44.46 3.01
1571 1597 6.619744 TGCACATGATACACCAAACTAATTG 58.380 36.000 0.00 0.00 38.84 2.32
1584 1610 6.911484 CAAACTAATTGGATTTGTGTCGAC 57.089 37.500 9.11 9.11 35.27 4.20
1613 1639 4.165372 TCAACTAAAACAGGGAGACACCTT 59.835 41.667 0.00 0.00 39.34 3.50
1742 1768 8.808529 CGCTGCATTATATATACTCCAAAGTAC 58.191 37.037 0.00 0.00 40.74 2.73
1757 1790 9.981114 ACTCCAAAGTACAAATAAAAATTCTGG 57.019 29.630 0.00 0.00 32.59 3.86
1767 1800 9.271828 ACAAATAAAAATTCTGGGTTTAGCTTG 57.728 29.630 0.00 0.00 0.00 4.01
1768 1801 9.487790 CAAATAAAAATTCTGGGTTTAGCTTGA 57.512 29.630 0.00 0.00 0.00 3.02
1770 1803 9.657419 AATAAAAATTCTGGGTTTAGCTTGATG 57.343 29.630 0.00 0.00 0.00 3.07
1771 1804 6.670695 AAAATTCTGGGTTTAGCTTGATGT 57.329 33.333 0.00 0.00 0.00 3.06
1772 1805 6.670695 AAATTCTGGGTTTAGCTTGATGTT 57.329 33.333 0.00 0.00 0.00 2.71
1773 1806 6.670695 AATTCTGGGTTTAGCTTGATGTTT 57.329 33.333 0.00 0.00 0.00 2.83
1774 1807 7.775053 AATTCTGGGTTTAGCTTGATGTTTA 57.225 32.000 0.00 0.00 0.00 2.01
1775 1808 7.775053 ATTCTGGGTTTAGCTTGATGTTTAA 57.225 32.000 0.00 0.00 0.00 1.52
1776 1809 7.775053 TTCTGGGTTTAGCTTGATGTTTAAT 57.225 32.000 0.00 0.00 0.00 1.40
1777 1810 7.775053 TCTGGGTTTAGCTTGATGTTTAATT 57.225 32.000 0.00 0.00 0.00 1.40
1778 1811 8.871629 TCTGGGTTTAGCTTGATGTTTAATTA 57.128 30.769 0.00 0.00 0.00 1.40
1779 1812 9.303116 TCTGGGTTTAGCTTGATGTTTAATTAA 57.697 29.630 0.00 0.00 0.00 1.40
1780 1813 9.353999 CTGGGTTTAGCTTGATGTTTAATTAAC 57.646 33.333 0.00 0.00 37.26 2.01
1820 1853 0.392461 TTGCAGTGATAGGAACGGCC 60.392 55.000 0.00 0.00 37.86 6.13
1844 1877 2.287009 CGCCTTCAACCTCTTGTTCAAC 60.287 50.000 0.00 0.00 34.00 3.18
1845 1878 2.287009 GCCTTCAACCTCTTGTTCAACG 60.287 50.000 0.00 0.00 34.00 4.10
1883 1916 2.836981 AGTTCTCATTGCTGGCTCTAGT 59.163 45.455 0.00 0.00 0.00 2.57
1922 1955 4.532834 GCCTTCAAAGATATGGGGTAACA 58.467 43.478 0.00 0.00 39.74 2.41
1930 1969 4.220724 AGATATGGGGTAACAAGCTACGA 58.779 43.478 0.00 0.00 39.74 3.43
1934 1973 2.093869 TGGGGTAACAAGCTACGATCAC 60.094 50.000 0.00 0.00 39.74 3.06
1968 2007 5.997732 AATGAAATGATTTTCTGAACGCG 57.002 34.783 3.53 3.53 41.54 6.01
2005 2044 8.172741 AGCCCCATGATATATATGTTGTTCTTT 58.827 33.333 0.00 0.00 0.00 2.52
2100 2139 0.538584 AGATGAGCATCGTGAAGCCA 59.461 50.000 4.93 0.00 42.48 4.75
2103 2142 1.375908 GAGCATCGTGAAGCCACCA 60.376 57.895 0.00 0.00 40.12 4.17
2124 2163 1.004745 GCAAAGGAGGTGATGAAGGGA 59.995 52.381 0.00 0.00 0.00 4.20
2148 2187 2.610859 ATCCCCAGGCTCAACGGT 60.611 61.111 0.00 0.00 0.00 4.83
2154 2193 2.032681 AGGCTCAACGGTTCCAGC 59.967 61.111 11.33 11.33 0.00 4.85
2206 2245 2.281762 GCTCTTGTAATGCCGTAAGTCG 59.718 50.000 0.00 0.00 39.52 4.18
2214 2253 3.581024 ATGCCGTAAGTCGTACAGAAA 57.419 42.857 0.00 0.00 37.94 2.52
2221 2260 6.747280 GCCGTAAGTCGTACAGAAATTAACTA 59.253 38.462 0.00 0.00 37.94 2.24
2234 2273 9.200817 ACAGAAATTAACTACCATTTGCCATAT 57.799 29.630 0.00 0.00 0.00 1.78
2505 2547 4.090057 GAAGACGCCGCCAAGTGC 62.090 66.667 0.00 0.00 0.00 4.40
2548 2590 4.618693 CGTCTTCCTTCCTACTCAAGGTTC 60.619 50.000 0.00 0.00 46.62 3.62
2603 2645 4.159506 TGAACTGTACATGATCGATGGTGA 59.840 41.667 0.54 0.00 36.23 4.02
2753 2795 4.338879 GCAATATATCATGCAGGGGTTCT 58.661 43.478 0.00 0.00 42.12 3.01
2851 2893 2.833151 TTATCGGAGGCCCCAGTGGT 62.833 60.000 8.74 0.00 36.04 4.16
2911 2953 4.203226 TGTTTTCACCACAGCACAGAATA 58.797 39.130 0.00 0.00 0.00 1.75
2971 3015 1.134220 TGGCCTTGGTTATCGTCCATC 60.134 52.381 3.32 0.00 34.75 3.51
3053 3097 0.322816 GCAGCAGGAACAAGATGGGA 60.323 55.000 0.00 0.00 0.00 4.37
3088 3132 6.893583 ACTCAATCTATGTAAGGAAGCACAT 58.106 36.000 0.00 0.00 38.81 3.21
3116 3160 9.793245 CACTACCGATCGATAAATTTCATTAAC 57.207 33.333 18.66 0.00 0.00 2.01
3176 3220 3.144506 GCTGAATCCATCCATGTACCTG 58.855 50.000 0.00 0.00 0.00 4.00
3218 3262 3.643320 TCTCATGGACGCTAGGATTCATT 59.357 43.478 0.00 0.00 0.00 2.57
3342 3386 1.142531 CCGCTGATGCTGCTCTACA 59.857 57.895 0.00 0.00 36.97 2.74
3344 3388 1.579698 CGCTGATGCTGCTCTACATT 58.420 50.000 0.00 0.00 36.97 2.71
3365 3409 0.881796 CTGCTGTCGTCTACCTCACA 59.118 55.000 0.00 0.00 0.00 3.58
3419 3463 1.094073 GCGAGCTGCAGGACATTGAT 61.094 55.000 17.12 0.00 45.45 2.57
3485 3529 6.590292 AGGACGACATAGTTGTACAATCAAAG 59.410 38.462 12.26 4.26 33.36 2.77
3501 3546 6.183360 ACAATCAAAGTGATGCTTGTTTACCA 60.183 34.615 0.00 0.00 36.54 3.25
4339 4385 3.603671 GGCGGGGGCGACTAGTAG 61.604 72.222 0.00 0.00 0.00 2.57
4340 4386 4.281947 GCGGGGGCGACTAGTAGC 62.282 72.222 18.64 18.64 0.00 3.58
4341 4387 3.962421 CGGGGGCGACTAGTAGCG 61.962 72.222 19.85 10.40 31.73 4.26
4342 4388 3.603671 GGGGGCGACTAGTAGCGG 61.604 72.222 19.85 0.66 31.73 5.52
4345 4391 4.625781 GGCGACTAGTAGCGGCGG 62.626 72.222 19.85 0.00 42.98 6.13
4346 4392 3.580193 GCGACTAGTAGCGGCGGA 61.580 66.667 12.37 0.00 0.00 5.54
4347 4393 2.327244 CGACTAGTAGCGGCGGAC 59.673 66.667 9.78 0.00 0.00 4.79
4376 4422 3.470888 CGCGGGAGTTGGGAGGAT 61.471 66.667 0.00 0.00 0.00 3.24
4377 4423 2.998949 GCGGGAGTTGGGAGGATT 59.001 61.111 0.00 0.00 0.00 3.01
4378 4424 1.303282 GCGGGAGTTGGGAGGATTT 59.697 57.895 0.00 0.00 0.00 2.17
4379 4425 0.323451 GCGGGAGTTGGGAGGATTTT 60.323 55.000 0.00 0.00 0.00 1.82
4380 4426 1.891011 GCGGGAGTTGGGAGGATTTTT 60.891 52.381 0.00 0.00 0.00 1.94
4381 4427 2.092323 CGGGAGTTGGGAGGATTTTTC 58.908 52.381 0.00 0.00 0.00 2.29
4382 4428 2.457598 GGGAGTTGGGAGGATTTTTCC 58.542 52.381 0.00 0.00 0.00 3.13
4389 4435 2.795165 GAGGATTTTTCCCTCCCGC 58.205 57.895 0.00 0.00 43.37 6.13
4390 4436 1.077716 AGGATTTTTCCCTCCCGCG 60.078 57.895 0.00 0.00 31.49 6.46
4391 4437 2.771639 GGATTTTTCCCTCCCGCGC 61.772 63.158 0.00 0.00 0.00 6.86
4392 4438 3.108357 GATTTTTCCCTCCCGCGCG 62.108 63.158 25.67 25.67 0.00 6.86
4393 4439 3.615509 ATTTTTCCCTCCCGCGCGA 62.616 57.895 34.63 11.99 0.00 5.87
4394 4440 4.752879 TTTTCCCTCCCGCGCGAG 62.753 66.667 34.63 20.97 0.00 5.03
4400 4446 2.354773 CTCCCGCGCGAGGATAAC 60.355 66.667 34.63 0.00 31.48 1.89
4401 4447 3.843117 CTCCCGCGCGAGGATAACC 62.843 68.421 34.63 0.00 31.48 2.85
4407 4453 4.211986 GCGAGGATAACCGCCAAA 57.788 55.556 0.00 0.00 45.06 3.28
4408 4454 2.702847 GCGAGGATAACCGCCAAAT 58.297 52.632 0.00 0.00 45.06 2.32
4409 4455 0.307760 GCGAGGATAACCGCCAAATG 59.692 55.000 0.00 0.00 45.06 2.32
4410 4456 1.948104 CGAGGATAACCGCCAAATGA 58.052 50.000 0.00 0.00 41.83 2.57
4411 4457 1.867233 CGAGGATAACCGCCAAATGAG 59.133 52.381 0.00 0.00 41.83 2.90
4412 4458 2.222027 GAGGATAACCGCCAAATGAGG 58.778 52.381 0.00 0.00 41.83 3.86
4413 4459 1.133792 AGGATAACCGCCAAATGAGGG 60.134 52.381 0.00 0.00 41.83 4.30
4414 4460 1.409661 GGATAACCGCCAAATGAGGGT 60.410 52.381 0.00 0.00 0.00 4.34
4415 4461 2.375146 GATAACCGCCAAATGAGGGTT 58.625 47.619 11.18 11.18 44.49 4.11
4416 4462 1.540267 TAACCGCCAAATGAGGGTTG 58.460 50.000 14.43 0.00 42.44 3.77
4418 4464 2.350458 CCGCCAAATGAGGGTTGGG 61.350 63.158 5.41 0.00 44.87 4.12
4419 4465 1.304052 CGCCAAATGAGGGTTGGGA 60.304 57.895 5.41 0.00 44.87 4.37
4420 4466 0.684153 CGCCAAATGAGGGTTGGGAT 60.684 55.000 5.41 0.00 44.87 3.85
4421 4467 1.409521 CGCCAAATGAGGGTTGGGATA 60.410 52.381 5.41 0.00 44.87 2.59
4422 4468 2.310538 GCCAAATGAGGGTTGGGATAG 58.689 52.381 5.41 0.00 44.87 2.08
4423 4469 2.949447 CCAAATGAGGGTTGGGATAGG 58.051 52.381 0.00 0.00 41.64 2.57
4424 4470 2.244769 CCAAATGAGGGTTGGGATAGGT 59.755 50.000 0.00 0.00 41.64 3.08
4425 4471 3.309848 CCAAATGAGGGTTGGGATAGGTT 60.310 47.826 0.00 0.00 41.64 3.50
4426 4472 4.352893 CAAATGAGGGTTGGGATAGGTTT 58.647 43.478 0.00 0.00 0.00 3.27
4427 4473 4.692523 AATGAGGGTTGGGATAGGTTTT 57.307 40.909 0.00 0.00 0.00 2.43
4428 4474 3.449746 TGAGGGTTGGGATAGGTTTTG 57.550 47.619 0.00 0.00 0.00 2.44
4429 4475 2.719705 TGAGGGTTGGGATAGGTTTTGT 59.280 45.455 0.00 0.00 0.00 2.83
4430 4476 3.141272 TGAGGGTTGGGATAGGTTTTGTT 59.859 43.478 0.00 0.00 0.00 2.83
4431 4477 3.762288 GAGGGTTGGGATAGGTTTTGTTC 59.238 47.826 0.00 0.00 0.00 3.18
4432 4478 2.829720 GGGTTGGGATAGGTTTTGTTCC 59.170 50.000 0.00 0.00 0.00 3.62
4433 4479 2.829720 GGTTGGGATAGGTTTTGTTCCC 59.170 50.000 0.00 0.00 46.77 3.97
4434 4480 3.501568 GGTTGGGATAGGTTTTGTTCCCT 60.502 47.826 8.24 0.00 46.73 4.20
4435 4481 4.264038 GGTTGGGATAGGTTTTGTTCCCTA 60.264 45.833 8.24 0.00 46.73 3.53
4436 4482 5.326900 GTTGGGATAGGTTTTGTTCCCTAA 58.673 41.667 8.24 0.00 46.73 2.69
4437 4483 4.925836 TGGGATAGGTTTTGTTCCCTAAC 58.074 43.478 8.24 0.00 46.73 2.34
4438 4484 4.264038 TGGGATAGGTTTTGTTCCCTAACC 60.264 45.833 8.24 0.00 46.73 2.85
4439 4485 4.275810 GGATAGGTTTTGTTCCCTAACCC 58.724 47.826 0.00 0.00 41.77 4.11
4440 4486 4.017775 GGATAGGTTTTGTTCCCTAACCCT 60.018 45.833 0.00 0.00 41.77 4.34
4441 4487 3.985553 AGGTTTTGTTCCCTAACCCTT 57.014 42.857 0.00 0.00 41.77 3.95
4442 4488 6.297185 GGATAGGTTTTGTTCCCTAACCCTTA 60.297 42.308 0.00 0.00 41.77 2.69
4443 4489 5.610429 AGGTTTTGTTCCCTAACCCTTAT 57.390 39.130 0.00 0.00 41.77 1.73
4444 4490 5.972698 AGGTTTTGTTCCCTAACCCTTATT 58.027 37.500 0.00 0.00 41.77 1.40
4445 4491 6.387127 AGGTTTTGTTCCCTAACCCTTATTT 58.613 36.000 0.00 0.00 41.77 1.40
4446 4492 6.847567 AGGTTTTGTTCCCTAACCCTTATTTT 59.152 34.615 0.00 0.00 41.77 1.82
4447 4493 7.348801 AGGTTTTGTTCCCTAACCCTTATTTTT 59.651 33.333 0.00 0.00 41.77 1.94
4464 4510 3.581265 TTTTTAGGGTTGGAAGACGGT 57.419 42.857 0.00 0.00 0.00 4.83
4465 4511 3.581265 TTTTAGGGTTGGAAGACGGTT 57.419 42.857 0.00 0.00 0.00 4.44
4466 4512 3.581265 TTTAGGGTTGGAAGACGGTTT 57.419 42.857 0.00 0.00 0.00 3.27
4467 4513 2.554370 TAGGGTTGGAAGACGGTTTG 57.446 50.000 0.00 0.00 0.00 2.93
4468 4514 0.841289 AGGGTTGGAAGACGGTTTGA 59.159 50.000 0.00 0.00 0.00 2.69
4469 4515 1.202770 AGGGTTGGAAGACGGTTTGAG 60.203 52.381 0.00 0.00 0.00 3.02
4470 4516 1.235724 GGTTGGAAGACGGTTTGAGG 58.764 55.000 0.00 0.00 0.00 3.86
4471 4517 1.235724 GTTGGAAGACGGTTTGAGGG 58.764 55.000 0.00 0.00 0.00 4.30
4472 4518 0.841289 TTGGAAGACGGTTTGAGGGT 59.159 50.000 0.00 0.00 0.00 4.34
4473 4519 0.841289 TGGAAGACGGTTTGAGGGTT 59.159 50.000 0.00 0.00 0.00 4.11
4474 4520 1.235724 GGAAGACGGTTTGAGGGTTG 58.764 55.000 0.00 0.00 0.00 3.77
4475 4521 1.235724 GAAGACGGTTTGAGGGTTGG 58.764 55.000 0.00 0.00 0.00 3.77
4476 4522 0.841289 AAGACGGTTTGAGGGTTGGA 59.159 50.000 0.00 0.00 0.00 3.53
4477 4523 0.108019 AGACGGTTTGAGGGTTGGAC 59.892 55.000 0.00 0.00 0.00 4.02
4478 4524 0.887836 GACGGTTTGAGGGTTGGACC 60.888 60.000 0.00 0.00 37.60 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.696148 CACAGACCTAAGATGTAACGATTACC 59.304 42.308 0.00 0.00 35.25 2.85
1 2 6.198591 GCACAGACCTAAGATGTAACGATTAC 59.801 42.308 0.00 0.00 36.67 1.89
2 3 6.270815 GCACAGACCTAAGATGTAACGATTA 58.729 40.000 0.00 0.00 0.00 1.75
3 4 5.109903 GCACAGACCTAAGATGTAACGATT 58.890 41.667 0.00 0.00 0.00 3.34
4 5 4.683832 GCACAGACCTAAGATGTAACGAT 58.316 43.478 0.00 0.00 0.00 3.73
5 6 3.427098 CGCACAGACCTAAGATGTAACGA 60.427 47.826 0.00 0.00 31.21 3.85
6 7 2.852413 CGCACAGACCTAAGATGTAACG 59.148 50.000 0.00 0.00 0.00 3.18
7 8 2.603560 GCGCACAGACCTAAGATGTAAC 59.396 50.000 0.30 0.00 0.00 2.50
8 9 2.232696 TGCGCACAGACCTAAGATGTAA 59.767 45.455 5.66 0.00 0.00 2.41
9 10 1.822371 TGCGCACAGACCTAAGATGTA 59.178 47.619 5.66 0.00 0.00 2.29
10 11 0.608130 TGCGCACAGACCTAAGATGT 59.392 50.000 5.66 0.00 0.00 3.06
11 12 3.441244 TGCGCACAGACCTAAGATG 57.559 52.632 5.66 0.00 0.00 2.90
25 26 3.747976 AAAATGCCGACCCTGCGC 61.748 61.111 0.00 0.00 0.00 6.09
26 27 2.179018 CAAAATGCCGACCCTGCG 59.821 61.111 0.00 0.00 0.00 5.18
27 28 1.212751 GTCAAAATGCCGACCCTGC 59.787 57.895 0.00 0.00 0.00 4.85
28 29 1.883021 GGTCAAAATGCCGACCCTG 59.117 57.895 0.00 0.00 45.03 4.45
29 30 4.415783 GGTCAAAATGCCGACCCT 57.584 55.556 0.00 0.00 45.03 4.34
32 33 1.212751 GCTGGGTCAAAATGCCGAC 59.787 57.895 0.00 0.00 0.00 4.79
33 34 2.331893 CGCTGGGTCAAAATGCCGA 61.332 57.895 0.00 0.00 0.00 5.54
34 35 2.179018 CGCTGGGTCAAAATGCCG 59.821 61.111 0.00 0.00 0.00 5.69
35 36 1.080569 CACGCTGGGTCAAAATGCC 60.081 57.895 0.00 0.00 0.00 4.40
36 37 1.734117 GCACGCTGGGTCAAAATGC 60.734 57.895 0.00 0.00 0.00 3.56
37 38 0.031857 TTGCACGCTGGGTCAAAATG 59.968 50.000 0.00 0.00 0.00 2.32
38 39 0.749649 TTTGCACGCTGGGTCAAAAT 59.250 45.000 14.89 0.00 0.00 1.82
39 40 0.749649 ATTTGCACGCTGGGTCAAAA 59.250 45.000 18.47 12.33 32.98 2.44
40 41 0.749649 AATTTGCACGCTGGGTCAAA 59.250 45.000 17.56 17.56 33.41 2.69
41 42 0.313672 GAATTTGCACGCTGGGTCAA 59.686 50.000 0.00 0.46 0.00 3.18
42 43 1.523154 GGAATTTGCACGCTGGGTCA 61.523 55.000 0.00 0.00 0.00 4.02
43 44 1.212751 GGAATTTGCACGCTGGGTC 59.787 57.895 0.00 0.00 0.00 4.46
44 45 2.625823 CGGAATTTGCACGCTGGGT 61.626 57.895 0.00 0.00 0.00 4.51
45 46 2.179018 CGGAATTTGCACGCTGGG 59.821 61.111 0.00 0.00 0.00 4.45
50 51 0.658829 TTTGTCGCGGAATTTGCACG 60.659 50.000 6.13 0.00 0.00 5.34
51 52 1.451651 CTTTTGTCGCGGAATTTGCAC 59.548 47.619 6.13 0.00 0.00 4.57
52 53 1.601663 CCTTTTGTCGCGGAATTTGCA 60.602 47.619 6.13 0.00 0.00 4.08
53 54 1.059942 CCTTTTGTCGCGGAATTTGC 58.940 50.000 6.13 0.00 0.00 3.68
54 55 2.225491 TCTCCTTTTGTCGCGGAATTTG 59.775 45.455 6.13 0.00 0.00 2.32
63 64 3.608506 CAGTATGACGTCTCCTTTTGTCG 59.391 47.826 17.92 0.00 39.69 4.35
95 97 2.028130 TGAAAATGGCACGGTGTCTTT 58.972 42.857 14.54 11.03 0.00 2.52
96 98 1.686355 TGAAAATGGCACGGTGTCTT 58.314 45.000 14.54 4.67 0.00 3.01
97 99 1.541147 CATGAAAATGGCACGGTGTCT 59.459 47.619 14.54 0.00 0.00 3.41
301 303 1.155624 GGGGACTAGGGCGGATACT 59.844 63.158 0.00 0.00 0.00 2.12
312 314 0.845337 AACGGTTTTGTGGGGGACTA 59.155 50.000 0.00 0.00 0.00 2.59
397 399 1.405821 AGATCCAACTCGTCGATGGAC 59.594 52.381 17.64 12.29 45.94 4.02
433 435 1.359475 GCTCGGTCGATGGTACTCC 59.641 63.158 0.00 0.00 0.00 3.85
436 438 1.146358 GCTTGCTCGGTCGATGGTAC 61.146 60.000 0.00 0.00 0.00 3.34
446 448 3.114616 CTCGTGGTGCTTGCTCGG 61.115 66.667 0.00 0.00 0.00 4.63
499 507 1.197721 GGAACAAGACTCACCAATGCG 59.802 52.381 0.00 0.00 0.00 4.73
500 508 2.508526 AGGAACAAGACTCACCAATGC 58.491 47.619 0.00 0.00 0.00 3.56
574 582 0.669619 TGACGCGTACAAAGGTCAGA 59.330 50.000 13.97 0.00 34.71 3.27
608 616 4.801330 ATCGACGATTGATGCCCTATAA 57.199 40.909 4.05 0.00 0.00 0.98
617 625 4.216687 GGAGGAGAAGTATCGACGATTGAT 59.783 45.833 16.73 2.13 0.00 2.57
643 651 2.497092 CTCAACCGTGCGACGATCG 61.497 63.158 14.88 14.88 46.05 3.69
644 652 0.179181 TACTCAACCGTGCGACGATC 60.179 55.000 0.00 0.00 46.05 3.69
645 653 0.455633 GTACTCAACCGTGCGACGAT 60.456 55.000 0.00 0.00 46.05 3.73
646 654 1.081906 GTACTCAACCGTGCGACGA 60.082 57.895 0.00 0.00 46.05 4.20
647 655 0.662374 AAGTACTCAACCGTGCGACG 60.662 55.000 0.00 0.00 42.11 5.12
648 656 1.058404 GAAGTACTCAACCGTGCGAC 58.942 55.000 0.00 0.00 0.00 5.19
649 657 0.386352 CGAAGTACTCAACCGTGCGA 60.386 55.000 0.00 0.00 0.00 5.10
650 658 1.342082 CCGAAGTACTCAACCGTGCG 61.342 60.000 0.00 0.00 0.00 5.34
651 659 1.623973 GCCGAAGTACTCAACCGTGC 61.624 60.000 0.00 1.18 0.00 5.34
652 660 1.012486 GGCCGAAGTACTCAACCGTG 61.012 60.000 0.00 0.00 0.00 4.94
653 661 1.183676 AGGCCGAAGTACTCAACCGT 61.184 55.000 0.00 0.00 0.00 4.83
654 662 0.458025 GAGGCCGAAGTACTCAACCG 60.458 60.000 0.00 0.00 0.00 4.44
655 663 0.458025 CGAGGCCGAAGTACTCAACC 60.458 60.000 0.00 0.00 38.22 3.77
656 664 0.243095 ACGAGGCCGAAGTACTCAAC 59.757 55.000 0.00 0.00 39.50 3.18
657 665 0.242825 CACGAGGCCGAAGTACTCAA 59.757 55.000 0.00 0.00 39.50 3.02
658 666 1.880894 CACGAGGCCGAAGTACTCA 59.119 57.895 0.00 0.00 39.50 3.41
659 667 1.516603 GCACGAGGCCGAAGTACTC 60.517 63.158 0.00 0.00 39.50 2.59
660 668 2.273179 TGCACGAGGCCGAAGTACT 61.273 57.895 0.00 0.00 43.89 2.73
661 669 2.092882 GTGCACGAGGCCGAAGTAC 61.093 63.158 0.00 0.00 43.89 2.73
662 670 1.812686 AAGTGCACGAGGCCGAAGTA 61.813 55.000 12.01 0.00 43.89 2.24
663 671 3.165160 AAGTGCACGAGGCCGAAGT 62.165 57.895 12.01 0.00 43.89 3.01
664 672 2.357517 AAGTGCACGAGGCCGAAG 60.358 61.111 12.01 0.00 43.89 3.79
665 673 2.664851 CAAGTGCACGAGGCCGAA 60.665 61.111 12.01 0.00 43.89 4.30
714 728 0.900647 ATATAGGCGGCGGCTCTTCT 60.901 55.000 39.51 23.17 39.70 2.85
715 729 0.458716 GATATAGGCGGCGGCTCTTC 60.459 60.000 39.51 27.43 39.70 2.87
719 733 1.878656 GACTGATATAGGCGGCGGCT 61.879 60.000 37.55 37.55 42.39 5.52
730 744 6.373216 GGAGCTTACATCTACTCGACTGATAT 59.627 42.308 0.00 0.00 0.00 1.63
738 752 2.355132 ACGTGGAGCTTACATCTACTCG 59.645 50.000 0.00 0.00 37.40 4.18
740 754 3.311871 CGTACGTGGAGCTTACATCTACT 59.688 47.826 7.22 0.00 0.00 2.57
742 756 2.615447 CCGTACGTGGAGCTTACATCTA 59.385 50.000 15.21 0.00 0.00 1.98
743 757 1.404391 CCGTACGTGGAGCTTACATCT 59.596 52.381 15.21 0.00 0.00 2.90
745 759 0.179119 GCCGTACGTGGAGCTTACAT 60.179 55.000 15.21 0.00 0.00 2.29
746 760 1.213537 GCCGTACGTGGAGCTTACA 59.786 57.895 15.21 0.00 0.00 2.41
747 761 1.074872 GTGCCGTACGTGGAGCTTAC 61.075 60.000 15.21 2.07 0.00 2.34
748 762 1.213537 GTGCCGTACGTGGAGCTTA 59.786 57.895 15.21 0.00 0.00 3.09
749 763 2.048503 GTGCCGTACGTGGAGCTT 60.049 61.111 15.21 0.00 0.00 3.74
750 764 4.065281 GGTGCCGTACGTGGAGCT 62.065 66.667 15.21 0.00 0.00 4.09
751 765 3.659089 ATGGTGCCGTACGTGGAGC 62.659 63.158 15.21 15.88 0.00 4.70
752 766 0.173935 TAATGGTGCCGTACGTGGAG 59.826 55.000 15.21 0.00 0.00 3.86
753 767 0.825410 ATAATGGTGCCGTACGTGGA 59.175 50.000 15.21 4.13 0.00 4.02
754 768 1.595794 GAATAATGGTGCCGTACGTGG 59.404 52.381 15.21 0.29 0.00 4.94
755 769 2.029970 GTGAATAATGGTGCCGTACGTG 59.970 50.000 15.21 6.95 0.00 4.49
756 770 2.273557 GTGAATAATGGTGCCGTACGT 58.726 47.619 15.21 0.00 0.00 3.57
757 771 1.595794 GGTGAATAATGGTGCCGTACG 59.404 52.381 8.69 8.69 0.00 3.67
758 772 2.870411 GAGGTGAATAATGGTGCCGTAC 59.130 50.000 0.00 0.00 0.00 3.67
759 773 2.769663 AGAGGTGAATAATGGTGCCGTA 59.230 45.455 0.00 0.00 0.00 4.02
760 774 1.559682 AGAGGTGAATAATGGTGCCGT 59.440 47.619 0.00 0.00 0.00 5.68
761 775 2.332063 AGAGGTGAATAATGGTGCCG 57.668 50.000 0.00 0.00 0.00 5.69
762 776 3.131396 CGTAGAGGTGAATAATGGTGCC 58.869 50.000 0.00 0.00 0.00 5.01
763 777 2.544267 GCGTAGAGGTGAATAATGGTGC 59.456 50.000 0.00 0.00 0.00 5.01
764 778 3.131396 GGCGTAGAGGTGAATAATGGTG 58.869 50.000 0.00 0.00 0.00 4.17
765 779 2.223971 CGGCGTAGAGGTGAATAATGGT 60.224 50.000 0.00 0.00 0.00 3.55
766 780 2.404215 CGGCGTAGAGGTGAATAATGG 58.596 52.381 0.00 0.00 0.00 3.16
767 781 1.792949 GCGGCGTAGAGGTGAATAATG 59.207 52.381 9.37 0.00 0.00 1.90
768 782 1.270147 GGCGGCGTAGAGGTGAATAAT 60.270 52.381 9.37 0.00 0.00 1.28
769 783 0.103572 GGCGGCGTAGAGGTGAATAA 59.896 55.000 9.37 0.00 0.00 1.40
770 784 1.737816 GGCGGCGTAGAGGTGAATA 59.262 57.895 9.37 0.00 0.00 1.75
771 785 2.499685 GGCGGCGTAGAGGTGAAT 59.500 61.111 9.37 0.00 0.00 2.57
772 786 4.124351 CGGCGGCGTAGAGGTGAA 62.124 66.667 24.74 0.00 0.00 3.18
776 790 4.891727 AATGCGGCGGCGTAGAGG 62.892 66.667 32.35 3.84 44.10 3.69
777 791 3.630148 CAATGCGGCGGCGTAGAG 61.630 66.667 32.35 20.00 44.10 2.43
801 815 0.038159 ACAGTGGCGTCTGAACTAGC 60.038 55.000 14.65 0.00 38.63 3.42
814 828 1.538512 CATCAAGCCAGAACACAGTGG 59.461 52.381 5.31 0.00 36.85 4.00
827 841 3.818787 CAGTGGCGGGCATCAAGC 61.819 66.667 7.75 0.00 44.65 4.01
843 857 3.506096 CTCGCTAGGGTCGACGCA 61.506 66.667 31.03 17.35 32.08 5.24
844 858 4.908877 GCTCGCTAGGGTCGACGC 62.909 72.222 23.85 23.85 32.08 5.19
874 888 2.225068 AAATCTACGCCCGATCAGTG 57.775 50.000 0.00 0.00 0.00 3.66
875 889 2.483188 GGAAAATCTACGCCCGATCAGT 60.483 50.000 0.00 0.00 0.00 3.41
879 893 2.040178 AGAGGAAAATCTACGCCCGAT 58.960 47.619 0.00 0.00 0.00 4.18
883 897 6.679327 ATTTACAAGAGGAAAATCTACGCC 57.321 37.500 0.00 0.00 0.00 5.68
900 914 8.909923 TCGATGATACTAGGACTTGAATTTACA 58.090 33.333 0.00 0.00 0.00 2.41
907 921 6.998673 TGAATCTCGATGATACTAGGACTTGA 59.001 38.462 0.00 0.00 34.45 3.02
908 922 7.208225 TGAATCTCGATGATACTAGGACTTG 57.792 40.000 0.00 0.00 34.45 3.16
910 924 7.888021 AGATTGAATCTCGATGATACTAGGACT 59.112 37.037 0.97 0.00 33.42 3.85
911 925 8.050778 AGATTGAATCTCGATGATACTAGGAC 57.949 38.462 0.97 0.00 33.42 3.85
912 926 9.740710 TTAGATTGAATCTCGATGATACTAGGA 57.259 33.333 11.53 0.00 40.76 2.94
936 956 9.886132 GGAGTACTTCAAAATCCTTGTAGATTA 57.114 33.333 0.00 0.00 35.40 1.75
937 957 8.606830 AGGAGTACTTCAAAATCCTTGTAGATT 58.393 33.333 3.42 0.00 37.05 2.40
946 966 7.845066 ACGAAATAGGAGTACTTCAAAATCC 57.155 36.000 3.42 0.00 0.00 3.01
959 979 8.909708 TTGCATTGAATTAAACGAAATAGGAG 57.090 30.769 0.00 0.00 0.00 3.69
1008 1030 2.358737 GCCGGTGTCTCCCTGTTG 60.359 66.667 1.90 0.00 0.00 3.33
1065 1087 1.213678 CAATCATCCCTTCTCAGGCCA 59.786 52.381 5.01 0.00 39.20 5.36
1075 1097 0.327924 TTGACACCGCAATCATCCCT 59.672 50.000 0.00 0.00 0.00 4.20
1077 1099 1.398390 GAGTTGACACCGCAATCATCC 59.602 52.381 0.00 0.00 0.00 3.51
1086 1108 1.078759 GATCCTGCGAGTTGACACCG 61.079 60.000 0.00 0.00 0.00 4.94
1173 1195 4.837972 AGAAGAGAGCATTACAGTTTCCC 58.162 43.478 0.00 0.00 0.00 3.97
1200 1222 7.232118 TGTGAATTGTGATTGAGAGAGACTA 57.768 36.000 0.00 0.00 0.00 2.59
1202 1224 6.203530 TGTTGTGAATTGTGATTGAGAGAGAC 59.796 38.462 0.00 0.00 0.00 3.36
1214 1236 7.805700 TCATACTATGTGTGTTGTGAATTGTG 58.194 34.615 0.00 0.00 0.00 3.33
1215 1237 7.977789 TCATACTATGTGTGTTGTGAATTGT 57.022 32.000 0.00 0.00 0.00 2.71
1216 1238 9.494479 GAATCATACTATGTGTGTTGTGAATTG 57.506 33.333 0.00 0.00 0.00 2.32
1217 1239 9.453572 AGAATCATACTATGTGTGTTGTGAATT 57.546 29.630 0.00 0.00 0.00 2.17
1219 1241 9.586435 CTAGAATCATACTATGTGTGTTGTGAA 57.414 33.333 0.00 0.00 0.00 3.18
1328 1350 2.032799 TGCAAGACGAACAAATGGTCAC 59.967 45.455 0.00 0.00 39.07 3.67
1332 1354 2.409378 GCAATGCAAGACGAACAAATGG 59.591 45.455 0.00 0.00 0.00 3.16
1344 1366 0.431984 CGAGCAAAACGCAATGCAAG 59.568 50.000 5.91 0.00 44.95 4.01
1345 1367 2.504351 CGAGCAAAACGCAATGCAA 58.496 47.368 5.91 0.00 44.95 4.08
1354 1376 2.171489 GACTGACCGGCGAGCAAAAC 62.171 60.000 9.30 0.00 0.00 2.43
1355 1377 1.959226 GACTGACCGGCGAGCAAAA 60.959 57.895 9.30 0.00 0.00 2.44
1379 1401 8.531982 GGGAAGGAAGCAAAATAATTAGTTTCT 58.468 33.333 7.89 6.31 0.00 2.52
1441 1463 0.040336 GCGCGAAGATCAGACCGATA 60.040 55.000 12.10 0.00 33.17 2.92
1447 1469 6.009115 TGTATAATTAGCGCGAAGATCAGA 57.991 37.500 12.10 0.00 0.00 3.27
1450 1472 5.002654 CGACTGTATAATTAGCGCGAAGATC 59.997 44.000 12.10 0.00 0.00 2.75
1513 1535 7.305474 TGAGTGTCACATATACTATACATGCG 58.695 38.462 5.62 0.00 28.18 4.73
1571 1597 3.204505 TGTCCGTCGACACAAATCC 57.795 52.632 17.16 0.00 44.20 3.01
1584 1610 3.670625 TCCCTGTTTTAGTTGATGTCCG 58.329 45.455 0.00 0.00 0.00 4.79
1613 1639 2.666190 GACTTGCACAGCTCGGCA 60.666 61.111 4.75 4.75 38.46 5.69
1676 1702 1.228337 TGCAGCAATCACAGCCACT 60.228 52.632 0.00 0.00 0.00 4.00
1742 1768 9.487790 TCAAGCTAAACCCAGAATTTTTATTTG 57.512 29.630 0.00 0.00 0.00 2.32
1746 1773 8.189119 ACATCAAGCTAAACCCAGAATTTTTA 57.811 30.769 0.00 0.00 0.00 1.52
1749 1776 6.670695 AACATCAAGCTAAACCCAGAATTT 57.329 33.333 0.00 0.00 0.00 1.82
1752 1785 7.775053 ATTAAACATCAAGCTAAACCCAGAA 57.225 32.000 0.00 0.00 0.00 3.02
1757 1790 8.860128 GCTGTTAATTAAACATCAAGCTAAACC 58.140 33.333 0.00 0.00 46.81 3.27
1763 1796 7.873739 AACTGCTGTTAATTAAACATCAAGC 57.126 32.000 7.26 3.96 46.81 4.01
1766 1799 9.685828 GGTAAAACTGCTGTTAATTAAACATCA 57.314 29.630 9.58 2.65 46.81 3.07
1767 1800 9.908152 AGGTAAAACTGCTGTTAATTAAACATC 57.092 29.630 9.58 0.00 46.81 3.06
1772 1805 9.522804 CACAAAGGTAAAACTGCTGTTAATTAA 57.477 29.630 9.58 0.00 34.96 1.40
1773 1806 8.904834 TCACAAAGGTAAAACTGCTGTTAATTA 58.095 29.630 9.58 3.26 34.96 1.40
1774 1807 7.777095 TCACAAAGGTAAAACTGCTGTTAATT 58.223 30.769 9.58 4.21 34.96 1.40
1775 1808 7.341445 TCACAAAGGTAAAACTGCTGTTAAT 57.659 32.000 9.58 4.86 34.96 1.40
1776 1809 6.761099 TCACAAAGGTAAAACTGCTGTTAA 57.239 33.333 9.58 0.00 34.96 2.01
1777 1810 6.952773 ATCACAAAGGTAAAACTGCTGTTA 57.047 33.333 9.58 0.00 34.96 2.41
1778 1811 5.852282 ATCACAAAGGTAAAACTGCTGTT 57.148 34.783 2.72 2.72 38.16 3.16
1779 1812 5.852282 AATCACAAAGGTAAAACTGCTGT 57.148 34.783 0.00 0.00 0.00 4.40
1780 1813 5.050837 GCAAATCACAAAGGTAAAACTGCTG 60.051 40.000 0.00 0.00 0.00 4.41
1781 1814 5.049828 GCAAATCACAAAGGTAAAACTGCT 58.950 37.500 0.00 0.00 0.00 4.24
1782 1815 4.808364 TGCAAATCACAAAGGTAAAACTGC 59.192 37.500 0.00 0.00 0.00 4.40
1783 1816 6.019640 CACTGCAAATCACAAAGGTAAAACTG 60.020 38.462 0.00 0.00 0.00 3.16
1784 1817 6.042143 CACTGCAAATCACAAAGGTAAAACT 58.958 36.000 0.00 0.00 0.00 2.66
1785 1818 6.039616 TCACTGCAAATCACAAAGGTAAAAC 58.960 36.000 0.00 0.00 0.00 2.43
1786 1819 6.214191 TCACTGCAAATCACAAAGGTAAAA 57.786 33.333 0.00 0.00 0.00 1.52
1791 1824 4.701651 TCCTATCACTGCAAATCACAAAGG 59.298 41.667 0.00 0.00 0.00 3.11
1792 1825 5.885230 TCCTATCACTGCAAATCACAAAG 57.115 39.130 0.00 0.00 0.00 2.77
1820 1853 1.884235 ACAAGAGGTTGAAGGCGAAG 58.116 50.000 0.00 0.00 37.10 3.79
1826 1859 3.002348 GGACGTTGAACAAGAGGTTGAAG 59.998 47.826 0.00 0.00 40.63 3.02
1845 1878 0.826672 ACTCCGATCCATACCGGGAC 60.827 60.000 6.32 0.00 45.36 4.46
1862 1895 2.836981 ACTAGAGCCAGCAATGAGAACT 59.163 45.455 0.00 0.00 0.00 3.01
1883 1916 1.153823 GCCGAGAAGAAGCAGCGTA 60.154 57.895 0.00 0.00 0.00 4.42
1922 1955 3.105283 AGTTAAGGGGTGATCGTAGCTT 58.895 45.455 0.00 0.00 0.00 3.74
1930 1969 6.953520 TCATTTCATTTCAGTTAAGGGGTGAT 59.046 34.615 0.00 0.00 0.00 3.06
1934 1973 9.154847 GAAAATCATTTCATTTCAGTTAAGGGG 57.845 33.333 0.00 0.00 43.62 4.79
1962 2001 2.778997 CTCACTGCTACGCGCGTTC 61.779 63.158 42.10 30.63 43.27 3.95
1968 2007 3.391665 ATGGGGCTCACTGCTACGC 62.392 63.158 0.00 0.00 42.39 4.42
1976 2015 6.418101 ACAACATATATATCATGGGGCTCAC 58.582 40.000 0.00 0.00 0.00 3.51
1992 2031 4.343526 TGGCCACACAAAAGAACAACATAT 59.656 37.500 0.00 0.00 0.00 1.78
2005 2044 1.697082 TTCCGTACCTGGCCACACAA 61.697 55.000 0.00 0.00 0.00 3.33
2011 2050 2.125106 CAGCTTCCGTACCTGGCC 60.125 66.667 0.00 0.00 0.00 5.36
2012 2051 2.125106 CCAGCTTCCGTACCTGGC 60.125 66.667 2.64 0.00 39.64 4.85
2100 2139 1.067295 TCATCACCTCCTTTGCTGGT 58.933 50.000 0.00 0.00 33.87 4.00
2103 2142 1.005215 CCCTTCATCACCTCCTTTGCT 59.995 52.381 0.00 0.00 0.00 3.91
2124 2163 2.173569 GTTGAGCCTGGGGATGAATAGT 59.826 50.000 0.00 0.00 0.00 2.12
2206 2245 7.822658 TGGCAAATGGTAGTTAATTTCTGTAC 58.177 34.615 0.00 0.00 0.00 2.90
2214 2253 8.766994 AACAGATATGGCAAATGGTAGTTAAT 57.233 30.769 0.00 0.00 0.00 1.40
2282 2324 6.130298 TGTGCCTGGAATAAATTCATTACG 57.870 37.500 0.00 0.00 38.53 3.18
2346 2388 1.568504 TTCCTCTTACTGATGCGGGT 58.431 50.000 0.00 0.00 0.00 5.28
2481 2523 4.162690 GCGGCGTCTTCCAGGGAT 62.163 66.667 9.37 0.00 0.00 3.85
2484 2526 4.697756 TTGGCGGCGTCTTCCAGG 62.698 66.667 14.51 0.00 0.00 4.45
2486 2528 3.936203 ACTTGGCGGCGTCTTCCA 61.936 61.111 14.51 6.44 0.00 3.53
2505 2547 3.680786 TCCAGTGTGAGGTCGCCG 61.681 66.667 0.00 0.00 0.00 6.46
2508 2550 1.210413 CGAGTCCAGTGTGAGGTCG 59.790 63.158 0.00 0.00 0.00 4.79
2753 2795 5.005740 CCACTTCTTCATCTTGATGTCCAA 58.994 41.667 10.01 0.00 0.00 3.53
2851 2893 1.107945 TGATAATGAGACGACCGGCA 58.892 50.000 0.00 0.00 0.00 5.69
2911 2953 5.102953 TGCAGTATTCAGGATGTTTAGCT 57.897 39.130 0.00 0.00 37.40 3.32
2942 2984 7.011499 ACGATAACCAAGGCCATTATACATA 57.989 36.000 5.01 0.00 0.00 2.29
2944 2986 5.298989 ACGATAACCAAGGCCATTATACA 57.701 39.130 5.01 0.00 0.00 2.29
2945 2987 4.694037 GGACGATAACCAAGGCCATTATAC 59.306 45.833 5.01 0.01 0.00 1.47
2950 2992 0.916086 TGGACGATAACCAAGGCCAT 59.084 50.000 5.01 0.00 34.25 4.40
3053 3097 5.065914 ACATAGATTGAGTTGTTGCACTGT 58.934 37.500 0.00 0.00 0.00 3.55
3088 3132 5.353111 TGAAATTTATCGATCGGTAGTGCA 58.647 37.500 16.41 3.93 0.00 4.57
3116 3160 7.329226 CACTTCCACAGCCAAAAATATAAACAG 59.671 37.037 0.00 0.00 0.00 3.16
3176 3220 5.148651 AGAACCCTACAATCTGTGTACAC 57.851 43.478 19.36 19.36 41.98 2.90
3218 3262 6.072286 GGAAGTAGACGTTTATCCCGATGATA 60.072 42.308 0.00 0.00 34.76 2.15
3342 3386 0.898320 AGGTAGACGACAGCAGCAAT 59.102 50.000 0.00 0.00 0.00 3.56
3344 3388 0.893727 TGAGGTAGACGACAGCAGCA 60.894 55.000 0.00 0.00 0.00 4.41
3365 3409 3.392616 ACTTGACTGTGTCCTTCCTGAAT 59.607 43.478 0.00 0.00 0.00 2.57
3419 3463 1.412710 ACCTTCGCTTTCTCAGTGTCA 59.587 47.619 0.00 0.00 34.27 3.58
3457 3501 3.337358 TGTACAACTATGTCGTCCTCGA 58.663 45.455 0.00 0.00 44.12 4.04
3469 3513 7.584108 CAAGCATCACTTTGATTGTACAACTA 58.416 34.615 11.22 0.00 38.02 2.24
3485 3529 2.488153 GAGGGTGGTAAACAAGCATCAC 59.512 50.000 0.00 0.00 38.52 3.06
3567 3612 8.251026 CAGAAGACCACACTAACAAGATATACA 58.749 37.037 0.00 0.00 0.00 2.29
3568 3613 7.222999 GCAGAAGACCACACTAACAAGATATAC 59.777 40.741 0.00 0.00 0.00 1.47
3569 3614 7.124298 AGCAGAAGACCACACTAACAAGATATA 59.876 37.037 0.00 0.00 0.00 0.86
3570 3615 6.070538 AGCAGAAGACCACACTAACAAGATAT 60.071 38.462 0.00 0.00 0.00 1.63
3571 3616 5.246203 AGCAGAAGACCACACTAACAAGATA 59.754 40.000 0.00 0.00 0.00 1.98
3572 3617 4.040952 AGCAGAAGACCACACTAACAAGAT 59.959 41.667 0.00 0.00 0.00 2.40
3573 3618 3.388024 AGCAGAAGACCACACTAACAAGA 59.612 43.478 0.00 0.00 0.00 3.02
3574 3619 3.733337 AGCAGAAGACCACACTAACAAG 58.267 45.455 0.00 0.00 0.00 3.16
3575 3620 3.838244 AGCAGAAGACCACACTAACAA 57.162 42.857 0.00 0.00 0.00 2.83
3619 3664 2.162338 ATTGCAGCAAAGCCGTGCAT 62.162 50.000 12.97 0.00 46.18 3.96
4322 4368 3.603671 CTACTAGTCGCCCCCGCC 61.604 72.222 0.00 0.00 0.00 6.13
4323 4369 4.281947 GCTACTAGTCGCCCCCGC 62.282 72.222 8.16 0.00 0.00 6.13
4324 4370 3.962421 CGCTACTAGTCGCCCCCG 61.962 72.222 13.29 0.00 0.00 5.73
4325 4371 3.603671 CCGCTACTAGTCGCCCCC 61.604 72.222 13.29 0.00 0.00 5.40
4326 4372 4.281947 GCCGCTACTAGTCGCCCC 62.282 72.222 13.29 1.56 0.00 5.80
4327 4373 4.625781 CGCCGCTACTAGTCGCCC 62.626 72.222 13.29 4.55 0.00 6.13
4328 4374 4.625781 CCGCCGCTACTAGTCGCC 62.626 72.222 13.29 0.25 0.00 5.54
4329 4375 3.580193 TCCGCCGCTACTAGTCGC 61.580 66.667 9.28 9.28 0.00 5.19
4330 4376 2.327244 GTCCGCCGCTACTAGTCG 59.673 66.667 0.00 0.00 0.00 4.18
4331 4377 2.327244 CGTCCGCCGCTACTAGTC 59.673 66.667 0.00 0.00 0.00 2.59
4359 4405 2.536997 AAATCCTCCCAACTCCCGCG 62.537 60.000 0.00 0.00 0.00 6.46
4360 4406 0.323451 AAAATCCTCCCAACTCCCGC 60.323 55.000 0.00 0.00 0.00 6.13
4361 4407 2.092323 GAAAAATCCTCCCAACTCCCG 58.908 52.381 0.00 0.00 0.00 5.14
4362 4408 2.457598 GGAAAAATCCTCCCAACTCCC 58.542 52.381 0.00 0.00 0.00 4.30
4383 4429 2.354773 GTTATCCTCGCGCGGGAG 60.355 66.667 37.71 37.71 36.21 4.30
4384 4430 3.908081 GGTTATCCTCGCGCGGGA 61.908 66.667 34.96 33.26 37.26 5.14
4391 4437 1.867233 CTCATTTGGCGGTTATCCTCG 59.133 52.381 0.00 0.00 0.00 4.63
4392 4438 2.222027 CCTCATTTGGCGGTTATCCTC 58.778 52.381 0.00 0.00 0.00 3.71
4393 4439 1.133792 CCCTCATTTGGCGGTTATCCT 60.134 52.381 0.00 0.00 0.00 3.24
4394 4440 1.318576 CCCTCATTTGGCGGTTATCC 58.681 55.000 0.00 0.00 0.00 2.59
4395 4441 2.052782 ACCCTCATTTGGCGGTTATC 57.947 50.000 0.00 0.00 0.00 1.75
4396 4442 2.099405 CAACCCTCATTTGGCGGTTAT 58.901 47.619 0.00 0.00 36.45 1.89
4397 4443 1.540267 CAACCCTCATTTGGCGGTTA 58.460 50.000 0.00 0.00 36.45 2.85
4398 4444 1.184970 CCAACCCTCATTTGGCGGTT 61.185 55.000 0.00 0.00 37.31 4.44
4399 4445 1.606313 CCAACCCTCATTTGGCGGT 60.606 57.895 0.00 0.00 37.31 5.68
4400 4446 2.350458 CCCAACCCTCATTTGGCGG 61.350 63.158 0.00 0.00 42.06 6.13
4401 4447 0.684153 ATCCCAACCCTCATTTGGCG 60.684 55.000 0.00 0.00 42.06 5.69
4402 4448 2.310538 CTATCCCAACCCTCATTTGGC 58.689 52.381 0.00 0.00 42.06 4.52
4403 4449 2.244769 ACCTATCCCAACCCTCATTTGG 59.755 50.000 0.00 0.00 42.90 3.28
4404 4450 3.669939 ACCTATCCCAACCCTCATTTG 57.330 47.619 0.00 0.00 0.00 2.32
4405 4451 4.692523 AAACCTATCCCAACCCTCATTT 57.307 40.909 0.00 0.00 0.00 2.32
4406 4452 4.202781 ACAAAACCTATCCCAACCCTCATT 60.203 41.667 0.00 0.00 0.00 2.57
4407 4453 3.336694 ACAAAACCTATCCCAACCCTCAT 59.663 43.478 0.00 0.00 0.00 2.90
4408 4454 2.719705 ACAAAACCTATCCCAACCCTCA 59.280 45.455 0.00 0.00 0.00 3.86
4409 4455 3.451402 ACAAAACCTATCCCAACCCTC 57.549 47.619 0.00 0.00 0.00 4.30
4410 4456 3.501568 GGAACAAAACCTATCCCAACCCT 60.502 47.826 0.00 0.00 0.00 4.34
4411 4457 2.829720 GGAACAAAACCTATCCCAACCC 59.170 50.000 0.00 0.00 0.00 4.11
4417 4463 4.017775 AGGGTTAGGGAACAAAACCTATCC 60.018 45.833 8.63 8.63 40.48 2.59
4418 4464 5.188988 AGGGTTAGGGAACAAAACCTATC 57.811 43.478 3.70 0.00 40.48 2.08
4419 4465 5.610429 AAGGGTTAGGGAACAAAACCTAT 57.390 39.130 3.70 0.00 41.24 2.57
4420 4466 6.723471 ATAAGGGTTAGGGAACAAAACCTA 57.277 37.500 3.70 0.00 41.24 3.08
4421 4467 3.985553 AAGGGTTAGGGAACAAAACCT 57.014 42.857 3.70 0.00 43.47 3.50
4422 4468 6.675413 AAATAAGGGTTAGGGAACAAAACC 57.325 37.500 0.00 0.00 43.94 3.27
4444 4490 3.581265 ACCGTCTTCCAACCCTAAAAA 57.419 42.857 0.00 0.00 0.00 1.94
4445 4491 3.581265 AACCGTCTTCCAACCCTAAAA 57.419 42.857 0.00 0.00 0.00 1.52
4446 4492 3.117963 TCAAACCGTCTTCCAACCCTAAA 60.118 43.478 0.00 0.00 0.00 1.85
4447 4493 2.438763 TCAAACCGTCTTCCAACCCTAA 59.561 45.455 0.00 0.00 0.00 2.69
4448 4494 2.038033 CTCAAACCGTCTTCCAACCCTA 59.962 50.000 0.00 0.00 0.00 3.53
4449 4495 0.841289 TCAAACCGTCTTCCAACCCT 59.159 50.000 0.00 0.00 0.00 4.34
4450 4496 1.235724 CTCAAACCGTCTTCCAACCC 58.764 55.000 0.00 0.00 0.00 4.11
4451 4497 1.235724 CCTCAAACCGTCTTCCAACC 58.764 55.000 0.00 0.00 0.00 3.77
4452 4498 1.235724 CCCTCAAACCGTCTTCCAAC 58.764 55.000 0.00 0.00 0.00 3.77
4453 4499 0.841289 ACCCTCAAACCGTCTTCCAA 59.159 50.000 0.00 0.00 0.00 3.53
4454 4500 0.841289 AACCCTCAAACCGTCTTCCA 59.159 50.000 0.00 0.00 0.00 3.53
4455 4501 1.235724 CAACCCTCAAACCGTCTTCC 58.764 55.000 0.00 0.00 0.00 3.46
4456 4502 1.202722 TCCAACCCTCAAACCGTCTTC 60.203 52.381 0.00 0.00 0.00 2.87
4457 4503 0.841289 TCCAACCCTCAAACCGTCTT 59.159 50.000 0.00 0.00 0.00 3.01
4458 4504 0.108019 GTCCAACCCTCAAACCGTCT 59.892 55.000 0.00 0.00 0.00 4.18
4459 4505 0.887836 GGTCCAACCCTCAAACCGTC 60.888 60.000 0.00 0.00 30.04 4.79
4460 4506 1.149854 GGTCCAACCCTCAAACCGT 59.850 57.895 0.00 0.00 30.04 4.83
4461 4507 4.074647 GGTCCAACCCTCAAACCG 57.925 61.111 0.00 0.00 30.04 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.