Multiple sequence alignment - TraesCS7A01G327200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G327200 chr7A 100.000 2973 0 0 1 2973 475588676 475591648 0.000000e+00 5491.0
1 TraesCS7A01G327200 chr7D 92.935 2746 120 32 43 2736 413659185 413661908 0.000000e+00 3928.0
2 TraesCS7A01G327200 chr7D 90.678 354 25 5 2444 2796 413665037 413665383 5.800000e-127 464.0
3 TraesCS7A01G327200 chr7B 92.741 1777 78 19 3 1752 428038638 428040390 0.000000e+00 2519.0
4 TraesCS7A01G327200 chr7B 87.977 524 34 15 1752 2250 428040426 428040945 2.550000e-165 592.0
5 TraesCS7A01G327200 chr7B 90.272 257 23 2 2556 2811 428043123 428043378 4.750000e-88 335.0
6 TraesCS7A01G327200 chr7B 89.744 78 4 2 2461 2534 428043050 428043127 2.440000e-16 97.1
7 TraesCS7A01G327200 chr2D 75.629 636 133 19 1116 1740 649338429 649339053 2.240000e-76 296.0
8 TraesCS7A01G327200 chr2B 74.763 634 142 15 1116 1740 785208550 785209174 4.880000e-68 268.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G327200 chr7A 475588676 475591648 2972 False 5491.000 5491 100.0000 1 2973 1 chr7A.!!$F1 2972
1 TraesCS7A01G327200 chr7D 413659185 413665383 6198 False 2196.000 3928 91.8065 43 2796 2 chr7D.!!$F1 2753
2 TraesCS7A01G327200 chr7B 428038638 428043378 4740 False 885.775 2519 90.1835 3 2811 4 chr7B.!!$F1 2808
3 TraesCS7A01G327200 chr2D 649338429 649339053 624 False 296.000 296 75.6290 1116 1740 1 chr2D.!!$F1 624
4 TraesCS7A01G327200 chr2B 785208550 785209174 624 False 268.000 268 74.7630 1116 1740 1 chr2B.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 399 0.179215 CTTGCGTCGATTGCTTGACC 60.179 55.0 12.89 0.0 32.84 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2253 4188 0.904649 TGACCATCGGACTCTGCATT 59.095 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.639113 AGTTTGTTTCCATCTGTCAAGTTAA 57.361 32.000 0.00 0.00 0.00 2.01
26 27 7.556275 AGTTTGTTTCCATCTGTCAAGTTAAGA 59.444 33.333 0.00 0.00 0.00 2.10
31 32 6.531503 TCCATCTGTCAAGTTAAGACCTAG 57.468 41.667 0.00 0.00 35.15 3.02
101 110 4.226620 GGAGGGAGGAAGTAATGTTTGGTA 59.773 45.833 0.00 0.00 0.00 3.25
137 146 5.772672 AGGAGTACAGGTAGATAGAATGCAG 59.227 44.000 0.00 0.00 0.00 4.41
232 244 8.740123 TTAGTTGTTTCTGAAACTATTGTGGA 57.260 30.769 27.75 7.93 41.90 4.02
370 383 7.015226 TGGTTAATTAGTTGATCGATGCTTG 57.985 36.000 0.54 0.00 0.00 4.01
386 399 0.179215 CTTGCGTCGATTGCTTGACC 60.179 55.000 12.89 0.00 32.84 4.02
409 422 8.658499 ACCCGAGTCAATATAGTGAAAATTAC 57.342 34.615 4.12 0.00 0.00 1.89
502 515 2.559840 ACGGCGAGTCACAGTACG 59.440 61.111 16.62 0.00 0.00 3.67
565 583 7.326454 ACCATATGTCATCTCAGTATATGCAC 58.674 38.462 1.24 0.00 32.86 4.57
771 789 7.228906 TGCAATTTGTTTGATGTTGAAATCCAT 59.771 29.630 0.00 0.00 37.53 3.41
814 832 0.539986 TAGCTCGATTTGGACACCCC 59.460 55.000 0.00 0.00 0.00 4.95
913 931 1.132780 GTAAGACGAACTCGCGCTCC 61.133 60.000 5.56 0.00 44.43 4.70
1071 1114 1.018226 CAGCAGGAGCACGAAGAAGG 61.018 60.000 0.00 0.00 45.49 3.46
1803 1889 2.443416 GGCCGTCCCTGAAACTAATTT 58.557 47.619 0.00 0.00 0.00 1.82
1820 1916 3.910568 ATTTAAGCTCTGCTCTGCTCT 57.089 42.857 0.00 0.00 38.25 4.09
1821 1917 2.669300 TTAAGCTCTGCTCTGCTCTG 57.331 50.000 0.00 0.00 38.25 3.35
1822 1918 1.554836 TAAGCTCTGCTCTGCTCTGT 58.445 50.000 0.00 0.00 38.25 3.41
1823 1919 0.686224 AAGCTCTGCTCTGCTCTGTT 59.314 50.000 0.00 0.00 38.25 3.16
1824 1920 0.247185 AGCTCTGCTCTGCTCTGTTC 59.753 55.000 0.00 0.00 30.62 3.18
1906 2004 7.559897 TGGGGTACTTCTTTGATGGAAATAATC 59.440 37.037 0.00 0.00 0.00 1.75
1965 2069 6.994421 ATTCAGGGGAAAATAAGTTGTTGT 57.006 33.333 0.00 0.00 36.43 3.32
2076 2184 5.738783 GCTGTTTTTGGTAGAGCAATGGAAA 60.739 40.000 0.00 0.00 0.00 3.13
2077 2185 5.841810 TGTTTTTGGTAGAGCAATGGAAAG 58.158 37.500 0.00 0.00 0.00 2.62
2078 2186 5.596361 TGTTTTTGGTAGAGCAATGGAAAGA 59.404 36.000 0.00 0.00 0.00 2.52
2162 2282 0.465705 TCATGGCCTCCTCATCGAAC 59.534 55.000 3.32 0.00 0.00 3.95
2167 2287 1.202428 GGCCTCCTCATCGAACAGTAC 60.202 57.143 0.00 0.00 0.00 2.73
2198 2321 3.692406 GCCCCACCGTCTCGTTCT 61.692 66.667 0.00 0.00 0.00 3.01
2229 2352 0.478072 TTTTCCAGAGCCAGCCTTGA 59.522 50.000 0.00 0.00 0.00 3.02
2253 4188 1.276705 TGCGTAGGGTGCAGTCAAATA 59.723 47.619 0.00 0.00 37.44 1.40
2271 4206 2.890808 TAATGCAGAGTCCGATGGTC 57.109 50.000 0.00 0.00 0.00 4.02
2278 4213 1.216678 AGAGTCCGATGGTCATCCTCT 59.783 52.381 10.40 10.40 32.69 3.69
2279 4214 2.443632 AGAGTCCGATGGTCATCCTCTA 59.556 50.000 13.02 0.00 34.46 2.43
2299 4234 9.155975 TCCTCTATCTCAAAAGAAGAAAAATCG 57.844 33.333 0.00 0.00 34.49 3.34
2300 4235 8.394121 CCTCTATCTCAAAAGAAGAAAAATCGG 58.606 37.037 0.00 0.00 34.49 4.18
2351 4286 3.622756 GCGATCAGCCGATGACAG 58.377 61.111 0.00 0.00 41.91 3.51
2362 4297 1.136305 CCGATGACAGGACACGGTTAT 59.864 52.381 0.00 0.00 38.97 1.89
2382 4317 4.696479 ATCTTGGATGAGGTACCATGAC 57.304 45.455 15.94 3.14 41.01 3.06
2415 4350 9.528489 ACCTGTTTGTTATGGTACTAAATTGAT 57.472 29.630 0.00 0.00 0.00 2.57
2426 4361 7.402054 TGGTACTAAATTGATCCTTCACACAT 58.598 34.615 0.00 0.00 0.00 3.21
2432 4367 7.722949 AAATTGATCCTTCACACATGGTAAT 57.277 32.000 0.00 0.00 0.00 1.89
2438 4373 3.691118 CCTTCACACATGGTAATGGTGAG 59.309 47.826 0.00 0.00 41.19 3.51
2447 4382 3.516586 TGGTAATGGTGAGGACTGAGAA 58.483 45.455 0.00 0.00 0.00 2.87
2449 4384 4.536090 TGGTAATGGTGAGGACTGAGAATT 59.464 41.667 0.00 0.00 0.00 2.17
2450 4385 5.119694 GGTAATGGTGAGGACTGAGAATTC 58.880 45.833 0.00 0.00 0.00 2.17
2451 4386 4.916041 AATGGTGAGGACTGAGAATTCA 57.084 40.909 8.44 0.00 0.00 2.57
2485 7844 3.695816 TCATCTTCGTCTTGCATCGTAG 58.304 45.455 0.00 0.00 0.00 3.51
2486 7845 3.128764 TCATCTTCGTCTTGCATCGTAGT 59.871 43.478 10.73 0.92 0.00 2.73
2487 7846 4.334481 TCATCTTCGTCTTGCATCGTAGTA 59.666 41.667 10.73 2.70 0.00 1.82
2545 7911 2.080693 TGTCAAAGATTGCGCGGTAAT 58.919 42.857 8.83 0.00 0.00 1.89
2560 7926 4.413495 CGGTAATTCCTCGCAAAAAGAA 57.587 40.909 0.00 0.00 0.00 2.52
2562 7928 4.671766 CGGTAATTCCTCGCAAAAAGAAGG 60.672 45.833 0.00 0.00 0.00 3.46
2563 7929 4.457949 GGTAATTCCTCGCAAAAAGAAGGA 59.542 41.667 0.00 0.00 0.00 3.36
2564 7930 4.505313 AATTCCTCGCAAAAAGAAGGAC 57.495 40.909 0.00 0.00 0.00 3.85
2565 7931 1.508632 TCCTCGCAAAAAGAAGGACG 58.491 50.000 0.00 0.00 0.00 4.79
2566 7932 1.069513 TCCTCGCAAAAAGAAGGACGA 59.930 47.619 0.00 0.00 0.00 4.20
2567 7933 1.461127 CCTCGCAAAAAGAAGGACGAG 59.539 52.381 0.00 0.00 44.84 4.18
2568 7934 0.865769 TCGCAAAAAGAAGGACGAGC 59.134 50.000 0.00 0.00 0.00 5.03
2576 7942 2.437359 AAGGACGAGCTGCATGGC 60.437 61.111 1.02 0.00 0.00 4.40
2588 7954 1.873572 GCATGGCCGTTGCGATTTC 60.874 57.895 13.99 0.00 38.85 2.17
2625 7991 6.531594 AGTGTGTAAGTCATTATCATGTCACG 59.468 38.462 0.00 0.00 0.00 4.35
2636 8002 8.773645 TCATTATCATGTCACGTCCATATTTTC 58.226 33.333 0.00 0.00 0.00 2.29
2696 8062 2.479560 GCAATGTGCCTAACCGATTTCC 60.480 50.000 0.00 0.00 37.42 3.13
2736 8102 5.678616 GCTGTTTGTTACAAGAGGAAAAGCA 60.679 40.000 4.55 0.00 36.02 3.91
2742 8108 2.587522 ACAAGAGGAAAAGCAGGAACC 58.412 47.619 0.00 0.00 0.00 3.62
2755 8121 1.938577 CAGGAACCGATGAAGATGCTG 59.061 52.381 0.00 0.00 0.00 4.41
2782 8148 0.951040 CTCAAGTGGTTCGTCCCTGC 60.951 60.000 0.00 0.00 34.77 4.85
2801 8167 4.754667 GGCCACGAGACCGAACCC 62.755 72.222 0.00 0.00 39.50 4.11
2817 8183 2.840576 CCGGGTGGGAACTGGAAA 59.159 61.111 0.00 0.00 38.47 3.13
2818 8184 1.382629 CCGGGTGGGAACTGGAAAT 59.617 57.895 0.00 0.00 38.47 2.17
2819 8185 0.251608 CCGGGTGGGAACTGGAAATT 60.252 55.000 0.00 0.00 38.47 1.82
2820 8186 1.627864 CGGGTGGGAACTGGAAATTT 58.372 50.000 0.00 0.00 0.00 1.82
2821 8187 2.555670 CCGGGTGGGAACTGGAAATTTA 60.556 50.000 0.00 0.00 38.47 1.40
2822 8188 2.752903 CGGGTGGGAACTGGAAATTTAG 59.247 50.000 0.00 0.00 0.00 1.85
2823 8189 3.774734 GGGTGGGAACTGGAAATTTAGT 58.225 45.455 0.00 0.00 0.00 2.24
2824 8190 3.762288 GGGTGGGAACTGGAAATTTAGTC 59.238 47.826 0.00 0.00 0.00 2.59
2825 8191 3.439129 GGTGGGAACTGGAAATTTAGTCG 59.561 47.826 0.00 0.00 0.00 4.18
2826 8192 4.070009 GTGGGAACTGGAAATTTAGTCGT 58.930 43.478 0.00 0.00 0.00 4.34
2827 8193 5.240121 GTGGGAACTGGAAATTTAGTCGTA 58.760 41.667 0.00 0.00 0.00 3.43
2828 8194 5.121298 GTGGGAACTGGAAATTTAGTCGTAC 59.879 44.000 0.00 0.00 0.00 3.67
2829 8195 4.633126 GGGAACTGGAAATTTAGTCGTACC 59.367 45.833 0.00 0.00 0.00 3.34
2830 8196 4.328169 GGAACTGGAAATTTAGTCGTACCG 59.672 45.833 0.00 0.00 0.00 4.02
2831 8197 4.525912 ACTGGAAATTTAGTCGTACCGT 57.474 40.909 0.00 0.00 0.00 4.83
2832 8198 4.488879 ACTGGAAATTTAGTCGTACCGTC 58.511 43.478 0.00 0.00 0.00 4.79
2833 8199 4.022068 ACTGGAAATTTAGTCGTACCGTCA 60.022 41.667 0.00 0.00 0.00 4.35
2834 8200 5.075858 TGGAAATTTAGTCGTACCGTCAT 57.924 39.130 0.00 0.00 0.00 3.06
2835 8201 6.127647 ACTGGAAATTTAGTCGTACCGTCATA 60.128 38.462 0.00 0.00 0.00 2.15
2836 8202 6.035843 TGGAAATTTAGTCGTACCGTCATAC 58.964 40.000 0.00 0.00 0.00 2.39
2837 8203 6.035843 GGAAATTTAGTCGTACCGTCATACA 58.964 40.000 0.00 0.00 0.00 2.29
2838 8204 6.531240 GGAAATTTAGTCGTACCGTCATACAA 59.469 38.462 0.00 0.00 0.00 2.41
2839 8205 7.253883 GGAAATTTAGTCGTACCGTCATACAAG 60.254 40.741 0.00 0.00 0.00 3.16
2840 8206 4.621068 TTAGTCGTACCGTCATACAAGG 57.379 45.455 0.00 0.00 0.00 3.61
2841 8207 2.715046 AGTCGTACCGTCATACAAGGA 58.285 47.619 0.00 0.00 0.00 3.36
2842 8208 2.421424 AGTCGTACCGTCATACAAGGAC 59.579 50.000 0.00 0.00 0.00 3.85
2843 8209 2.421424 GTCGTACCGTCATACAAGGACT 59.579 50.000 0.00 0.00 33.11 3.85
2844 8210 3.623060 GTCGTACCGTCATACAAGGACTA 59.377 47.826 0.00 0.00 33.11 2.59
2845 8211 4.094887 GTCGTACCGTCATACAAGGACTAA 59.905 45.833 0.00 0.00 33.11 2.24
2846 8212 4.699735 TCGTACCGTCATACAAGGACTAAA 59.300 41.667 0.00 0.00 33.11 1.85
2847 8213 5.032863 CGTACCGTCATACAAGGACTAAAG 58.967 45.833 0.00 0.00 33.11 1.85
2848 8214 5.163723 CGTACCGTCATACAAGGACTAAAGA 60.164 44.000 0.00 0.00 33.11 2.52
2849 8215 5.069501 ACCGTCATACAAGGACTAAAGAC 57.930 43.478 0.00 0.00 33.11 3.01
2850 8216 4.525487 ACCGTCATACAAGGACTAAAGACA 59.475 41.667 0.00 0.00 33.11 3.41
2851 8217 5.103000 CCGTCATACAAGGACTAAAGACAG 58.897 45.833 0.00 0.00 33.11 3.51
2852 8218 5.105877 CCGTCATACAAGGACTAAAGACAGA 60.106 44.000 0.00 0.00 33.11 3.41
2853 8219 6.405953 CCGTCATACAAGGACTAAAGACAGAT 60.406 42.308 0.00 0.00 33.11 2.90
2854 8220 7.036220 CGTCATACAAGGACTAAAGACAGATT 58.964 38.462 0.00 0.00 33.11 2.40
2855 8221 7.009631 CGTCATACAAGGACTAAAGACAGATTG 59.990 40.741 0.00 0.00 33.11 2.67
2856 8222 8.035394 GTCATACAAGGACTAAAGACAGATTGA 58.965 37.037 0.00 0.00 32.54 2.57
2857 8223 8.762645 TCATACAAGGACTAAAGACAGATTGAT 58.237 33.333 0.00 0.00 0.00 2.57
2858 8224 9.388506 CATACAAGGACTAAAGACAGATTGATT 57.611 33.333 0.00 0.00 0.00 2.57
2861 8227 9.442047 ACAAGGACTAAAGACAGATTGATTAAG 57.558 33.333 0.00 0.00 0.00 1.85
2862 8228 8.887717 CAAGGACTAAAGACAGATTGATTAAGG 58.112 37.037 0.00 0.00 0.00 2.69
2863 8229 7.051000 AGGACTAAAGACAGATTGATTAAGGC 58.949 38.462 0.00 0.00 0.00 4.35
2864 8230 6.823689 GGACTAAAGACAGATTGATTAAGGCA 59.176 38.462 0.00 0.00 0.00 4.75
2865 8231 7.336931 GGACTAAAGACAGATTGATTAAGGCAA 59.663 37.037 0.00 0.00 0.00 4.52
2866 8232 8.273780 ACTAAAGACAGATTGATTAAGGCAAG 57.726 34.615 0.00 0.00 0.00 4.01
2867 8233 7.885399 ACTAAAGACAGATTGATTAAGGCAAGT 59.115 33.333 0.00 0.00 0.00 3.16
2868 8234 7.530426 AAAGACAGATTGATTAAGGCAAGTT 57.470 32.000 0.00 0.00 0.00 2.66
2869 8235 6.506500 AGACAGATTGATTAAGGCAAGTTG 57.493 37.500 0.00 0.00 0.00 3.16
2870 8236 5.064441 ACAGATTGATTAAGGCAAGTTGC 57.936 39.130 19.87 19.87 44.08 4.17
2882 8248 2.742774 GCAAGTTGCAAGTAGGGTTTG 58.257 47.619 22.90 2.07 44.26 2.93
2883 8249 2.100749 GCAAGTTGCAAGTAGGGTTTGT 59.899 45.455 22.90 0.00 44.26 2.83
2884 8250 3.705604 CAAGTTGCAAGTAGGGTTTGTG 58.294 45.455 7.33 0.00 0.00 3.33
2885 8251 1.681264 AGTTGCAAGTAGGGTTTGTGC 59.319 47.619 4.57 0.00 35.75 4.57
2886 8252 1.036707 TTGCAAGTAGGGTTTGTGCC 58.963 50.000 0.00 0.00 34.25 5.01
2887 8253 0.106469 TGCAAGTAGGGTTTGTGCCA 60.106 50.000 0.00 0.00 34.25 4.92
2888 8254 1.256812 GCAAGTAGGGTTTGTGCCAT 58.743 50.000 0.00 0.00 0.00 4.40
2889 8255 1.067635 GCAAGTAGGGTTTGTGCCATG 60.068 52.381 0.00 0.00 0.00 3.66
2890 8256 1.067635 CAAGTAGGGTTTGTGCCATGC 60.068 52.381 0.00 0.00 0.00 4.06
2891 8257 0.960364 AGTAGGGTTTGTGCCATGCG 60.960 55.000 0.00 0.00 30.43 4.73
2892 8258 1.074072 TAGGGTTTGTGCCATGCGT 59.926 52.632 0.00 0.00 0.00 5.24
2893 8259 0.325272 TAGGGTTTGTGCCATGCGTA 59.675 50.000 0.00 0.00 0.00 4.42
2894 8260 0.538516 AGGGTTTGTGCCATGCGTAA 60.539 50.000 0.00 0.00 0.00 3.18
2895 8261 0.109319 GGGTTTGTGCCATGCGTAAG 60.109 55.000 0.00 0.00 43.44 2.34
2896 8262 0.878416 GGTTTGTGCCATGCGTAAGA 59.122 50.000 0.00 0.00 43.02 2.10
2897 8263 1.268352 GGTTTGTGCCATGCGTAAGAA 59.732 47.619 0.00 0.00 43.02 2.52
2898 8264 2.584791 GTTTGTGCCATGCGTAAGAAG 58.415 47.619 0.00 0.00 43.02 2.85
2899 8265 2.177394 TTGTGCCATGCGTAAGAAGA 57.823 45.000 0.00 0.00 43.02 2.87
2900 8266 1.438651 TGTGCCATGCGTAAGAAGAC 58.561 50.000 0.00 0.00 43.02 3.01
2901 8267 1.270571 TGTGCCATGCGTAAGAAGACA 60.271 47.619 0.00 0.00 43.02 3.41
2902 8268 1.804151 GTGCCATGCGTAAGAAGACAA 59.196 47.619 0.00 0.00 43.02 3.18
2903 8269 2.076100 TGCCATGCGTAAGAAGACAAG 58.924 47.619 0.00 0.00 43.02 3.16
2904 8270 2.289382 TGCCATGCGTAAGAAGACAAGA 60.289 45.455 0.00 0.00 43.02 3.02
2905 8271 2.094417 GCCATGCGTAAGAAGACAAGAC 59.906 50.000 0.00 0.00 43.02 3.01
2906 8272 2.345641 CCATGCGTAAGAAGACAAGACG 59.654 50.000 0.00 0.00 43.02 4.18
2907 8273 3.242518 CATGCGTAAGAAGACAAGACGA 58.757 45.455 0.00 0.00 43.02 4.20
2908 8274 3.570926 TGCGTAAGAAGACAAGACGAT 57.429 42.857 0.00 0.00 43.02 3.73
2909 8275 3.242518 TGCGTAAGAAGACAAGACGATG 58.757 45.455 0.00 0.00 43.02 3.84
2910 8276 3.057806 TGCGTAAGAAGACAAGACGATGA 60.058 43.478 0.00 0.00 43.02 2.92
2911 8277 3.301116 GCGTAAGAAGACAAGACGATGAC 59.699 47.826 0.00 0.00 43.02 3.06
2912 8278 3.538782 CGTAAGAAGACAAGACGATGACG 59.461 47.826 0.00 0.00 43.05 4.35
2913 8279 2.638556 AGAAGACAAGACGATGACGG 57.361 50.000 0.00 0.00 44.46 4.79
2924 8290 4.657075 GACGATGACGGCTTTTTAAAGA 57.343 40.909 6.41 0.00 45.04 2.52
2925 8291 5.217895 GACGATGACGGCTTTTTAAAGAT 57.782 39.130 6.41 0.00 45.04 2.40
2926 8292 4.969816 ACGATGACGGCTTTTTAAAGATG 58.030 39.130 6.41 0.49 44.46 2.90
2927 8293 4.693566 ACGATGACGGCTTTTTAAAGATGA 59.306 37.500 6.41 0.00 44.46 2.92
2928 8294 5.180492 ACGATGACGGCTTTTTAAAGATGAA 59.820 36.000 6.41 0.00 44.46 2.57
2929 8295 6.083630 CGATGACGGCTTTTTAAAGATGAAA 58.916 36.000 6.41 0.00 37.75 2.69
2930 8296 6.747280 CGATGACGGCTTTTTAAAGATGAAAT 59.253 34.615 6.41 0.00 37.75 2.17
2931 8297 7.908082 CGATGACGGCTTTTTAAAGATGAAATA 59.092 33.333 6.41 0.00 37.75 1.40
2932 8298 9.567848 GATGACGGCTTTTTAAAGATGAAATAA 57.432 29.630 6.41 0.00 38.28 1.40
2933 8299 8.964420 TGACGGCTTTTTAAAGATGAAATAAG 57.036 30.769 6.41 0.00 38.28 1.73
2934 8300 8.026607 TGACGGCTTTTTAAAGATGAAATAAGG 58.973 33.333 6.41 0.00 38.28 2.69
2935 8301 7.892609 ACGGCTTTTTAAAGATGAAATAAGGT 58.107 30.769 6.41 0.00 38.28 3.50
2936 8302 8.027189 ACGGCTTTTTAAAGATGAAATAAGGTC 58.973 33.333 6.41 0.00 38.28 3.85
2937 8303 7.488150 CGGCTTTTTAAAGATGAAATAAGGTCC 59.512 37.037 6.41 0.00 38.28 4.46
2938 8304 8.531982 GGCTTTTTAAAGATGAAATAAGGTCCT 58.468 33.333 6.41 0.00 38.28 3.85
2939 8305 9.574458 GCTTTTTAAAGATGAAATAAGGTCCTC 57.426 33.333 6.41 0.00 38.28 3.71
2941 8307 8.589701 TTTTAAAGATGAAATAAGGTCCTCCC 57.410 34.615 0.00 0.00 0.00 4.30
2942 8308 4.797912 AAGATGAAATAAGGTCCTCCCC 57.202 45.455 0.00 0.00 0.00 4.81
2943 8309 3.056832 AGATGAAATAAGGTCCTCCCCC 58.943 50.000 0.00 0.00 0.00 5.40
2963 8329 2.758737 CCCCCTAGTCGCCGTTCT 60.759 66.667 0.00 0.00 0.00 3.01
2964 8330 2.494918 CCCCTAGTCGCCGTTCTG 59.505 66.667 0.00 0.00 0.00 3.02
2965 8331 2.494918 CCCTAGTCGCCGTTCTGG 59.505 66.667 0.00 0.00 42.50 3.86
2966 8332 2.348888 CCCTAGTCGCCGTTCTGGT 61.349 63.158 0.00 0.00 41.21 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.644157 GTCTTAACTTGACAGATGGAAACAAAC 59.356 37.037 0.00 0.00 37.92 2.93
9 10 6.102663 CACTAGGTCTTAACTTGACAGATGG 58.897 44.000 0.00 0.00 36.26 3.51
15 16 6.047231 ACAACACACTAGGTCTTAACTTGAC 58.953 40.000 0.00 0.00 0.00 3.18
22 23 7.456725 ACTACTAGACAACACACTAGGTCTTA 58.543 38.462 0.00 0.00 40.76 2.10
24 25 5.878627 ACTACTAGACAACACACTAGGTCT 58.121 41.667 0.00 0.00 42.76 3.85
26 27 9.745018 TTTATACTACTAGACAACACACTAGGT 57.255 33.333 0.00 0.00 39.97 3.08
101 110 4.080526 ACCTGTACTCCTCTGTTTTGTTGT 60.081 41.667 0.00 0.00 0.00 3.32
137 146 1.325943 GCAGCAGCAATCGTAGAGAAC 59.674 52.381 0.00 0.00 40.13 3.01
232 244 3.159213 TGATTTGACATGCCAACCTCT 57.841 42.857 0.00 0.00 0.00 3.69
370 383 2.785258 GGGTCAAGCAATCGACGC 59.215 61.111 0.36 0.36 37.83 5.19
386 399 8.348983 ACGTAATTTTCACTATATTGACTCGG 57.651 34.615 0.00 0.00 0.00 4.63
398 411 8.621286 AGTCAAAATCAGAACGTAATTTTCACT 58.379 29.630 8.20 8.20 31.51 3.41
409 422 3.496130 ACTGAGCAGTCAAAATCAGAACG 59.504 43.478 7.97 0.00 41.35 3.95
443 456 1.956170 CATCGGGCATGCTCGGTAC 60.956 63.158 37.48 10.56 40.85 3.34
612 630 9.423061 TGATATCCAATTGATGTTGTATACTCG 57.577 33.333 7.12 0.00 34.76 4.18
771 789 0.679505 CTTCGGTTCAGACCAGTCCA 59.320 55.000 0.00 0.00 46.91 4.02
814 832 2.262915 GAGGAGTGGCGTCAGGTG 59.737 66.667 0.00 0.00 0.00 4.00
948 966 0.615331 ATATACATGAGCCCGGCAGG 59.385 55.000 13.15 0.00 39.47 4.85
1071 1114 4.867608 CGACATCTTCTTCCTCCTCTTTTC 59.132 45.833 0.00 0.00 0.00 2.29
1803 1889 1.554836 ACAGAGCAGAGCAGAGCTTA 58.445 50.000 0.00 0.00 42.04 3.09
1820 1916 9.449550 CATTGTACTATACGTATTTACCGAACA 57.550 33.333 14.33 6.46 0.00 3.18
1821 1917 8.905702 CCATTGTACTATACGTATTTACCGAAC 58.094 37.037 14.33 4.09 0.00 3.95
1822 1918 8.845227 TCCATTGTACTATACGTATTTACCGAA 58.155 33.333 14.33 7.57 0.00 4.30
1823 1919 8.389779 TCCATTGTACTATACGTATTTACCGA 57.610 34.615 14.33 7.71 0.00 4.69
1824 1920 9.630098 AATCCATTGTACTATACGTATTTACCG 57.370 33.333 14.33 7.13 0.00 4.02
1937 2041 9.990868 AACAACTTATTTTCCCCTGAATATACT 57.009 29.630 0.00 0.00 28.21 2.12
1939 2043 9.762381 ACAACAACTTATTTTCCCCTGAATATA 57.238 29.630 0.00 0.00 0.00 0.86
1940 2044 8.664669 ACAACAACTTATTTTCCCCTGAATAT 57.335 30.769 0.00 0.00 0.00 1.28
1983 2087 9.803315 CTGCTTCTCTAATAACAAGTACATGTA 57.197 33.333 3.84 0.08 32.02 2.29
1984 2088 8.531982 TCTGCTTCTCTAATAACAAGTACATGT 58.468 33.333 2.69 2.69 34.24 3.21
1985 2089 8.932945 TCTGCTTCTCTAATAACAAGTACATG 57.067 34.615 0.00 0.00 0.00 3.21
1986 2090 8.754080 ACTCTGCTTCTCTAATAACAAGTACAT 58.246 33.333 0.00 0.00 0.00 2.29
1987 2091 8.123639 ACTCTGCTTCTCTAATAACAAGTACA 57.876 34.615 0.00 0.00 0.00 2.90
1988 2092 8.989653 AACTCTGCTTCTCTAATAACAAGTAC 57.010 34.615 0.00 0.00 0.00 2.73
1990 2094 9.998106 TTAAACTCTGCTTCTCTAATAACAAGT 57.002 29.630 0.00 0.00 0.00 3.16
1997 2101 7.126421 TCCCTGATTAAACTCTGCTTCTCTAAT 59.874 37.037 0.00 0.00 0.00 1.73
2001 2107 5.091261 TCCCTGATTAAACTCTGCTTCTC 57.909 43.478 0.00 0.00 0.00 2.87
2076 2184 5.012975 GGCCAAGAGAGGAAGATCATTATCT 59.987 44.000 0.00 0.00 44.67 1.98
2077 2185 5.244755 GGCCAAGAGAGGAAGATCATTATC 58.755 45.833 0.00 0.00 0.00 1.75
2078 2186 4.042684 GGGCCAAGAGAGGAAGATCATTAT 59.957 45.833 4.39 0.00 0.00 1.28
2091 2202 1.130054 ACAGCAAGAGGGCCAAGAGA 61.130 55.000 6.18 0.00 0.00 3.10
2162 2282 2.179589 GCCGTGTGTATGTACGTACTG 58.820 52.381 25.12 11.68 38.56 2.74
2167 2287 1.519898 GGGGCCGTGTGTATGTACG 60.520 63.158 0.00 0.00 39.83 3.67
2198 2321 4.518970 GGCTCTGGAAAAGACACAAATACA 59.481 41.667 0.00 0.00 0.00 2.29
2229 2352 2.343758 CTGCACCCTACGCACAGT 59.656 61.111 0.00 0.00 35.08 3.55
2253 4188 0.904649 TGACCATCGGACTCTGCATT 59.095 50.000 0.00 0.00 0.00 3.56
2262 4197 3.074538 TGAGATAGAGGATGACCATCGGA 59.925 47.826 4.15 0.00 38.69 4.55
2278 4213 7.413000 CGCTCCGATTTTTCTTCTTTTGAGATA 60.413 37.037 0.00 0.00 0.00 1.98
2279 4214 6.616017 GCTCCGATTTTTCTTCTTTTGAGAT 58.384 36.000 0.00 0.00 0.00 2.75
2299 4234 2.317530 AAATTAGCTGGACTCGCTCC 57.682 50.000 0.00 0.00 38.86 4.70
2300 4235 2.609916 GGAAAATTAGCTGGACTCGCTC 59.390 50.000 0.00 0.00 38.86 5.03
2351 4286 3.458189 CTCATCCAAGATAACCGTGTCC 58.542 50.000 0.00 0.00 0.00 4.02
2362 4297 2.430694 CGTCATGGTACCTCATCCAAGA 59.569 50.000 14.36 0.00 37.27 3.02
2382 4317 3.682858 ACCATAACAAACAGGTCGATTCG 59.317 43.478 0.00 0.00 0.00 3.34
2415 4350 3.329225 TCACCATTACCATGTGTGAAGGA 59.671 43.478 7.16 0.00 37.51 3.36
2426 4361 3.184382 TCTCAGTCCTCACCATTACCA 57.816 47.619 0.00 0.00 0.00 3.25
2432 4367 3.584406 ACATGAATTCTCAGTCCTCACCA 59.416 43.478 7.05 0.00 34.23 4.17
2451 4386 6.577103 AGACGAAGATGATTCATGTGTACAT 58.423 36.000 3.32 0.00 36.96 2.29
2485 7844 7.201145 ACAACGTGACAAGGTAGATATGATAC 58.799 38.462 0.00 0.00 0.00 2.24
2486 7845 7.342769 ACAACGTGACAAGGTAGATATGATA 57.657 36.000 0.00 0.00 0.00 2.15
2487 7846 6.222038 ACAACGTGACAAGGTAGATATGAT 57.778 37.500 0.00 0.00 0.00 2.45
2545 7911 1.871039 CGTCCTTCTTTTTGCGAGGAA 59.129 47.619 0.00 0.00 39.83 3.36
2557 7923 1.220206 CCATGCAGCTCGTCCTTCT 59.780 57.895 0.00 0.00 0.00 2.85
2558 7924 2.467826 GCCATGCAGCTCGTCCTTC 61.468 63.158 0.00 0.00 0.00 3.46
2560 7926 4.479993 GGCCATGCAGCTCGTCCT 62.480 66.667 0.00 0.00 0.00 3.85
2563 7929 4.704833 AACGGCCATGCAGCTCGT 62.705 61.111 2.24 8.08 39.99 4.18
2564 7930 4.170062 CAACGGCCATGCAGCTCG 62.170 66.667 2.24 0.00 34.13 5.03
2565 7931 4.487412 GCAACGGCCATGCAGCTC 62.487 66.667 22.14 0.00 43.29 4.09
2568 7934 2.546645 AAATCGCAACGGCCATGCAG 62.547 55.000 25.25 18.59 44.01 4.41
2576 7942 1.003545 CTAGCCATGAAATCGCAACGG 60.004 52.381 0.00 0.00 0.00 4.44
2588 7954 2.967599 TACACACTGCTCTAGCCATG 57.032 50.000 0.00 0.51 41.18 3.66
2625 7991 4.443394 CGGTGCTACTACGAAAATATGGAC 59.557 45.833 0.00 0.00 0.00 4.02
2636 8002 1.752501 GCATGCACGGTGCTACTACG 61.753 60.000 30.81 14.86 45.31 3.51
2696 8062 3.741476 GCCAGCGGCTCAAACCTG 61.741 66.667 0.00 0.00 46.69 4.00
2736 8102 1.745141 GCAGCATCTTCATCGGTTCCT 60.745 52.381 0.00 0.00 0.00 3.36
2742 8108 0.029035 GCCTTGCAGCATCTTCATCG 59.971 55.000 0.00 0.00 0.00 3.84
2755 8121 0.312102 GAACCACTTGAGTGCCTTGC 59.688 55.000 5.62 0.00 44.34 4.01
2801 8167 1.627864 AAATTTCCAGTTCCCACCCG 58.372 50.000 0.00 0.00 0.00 5.28
2825 8191 6.032717 GTCTTTAGTCCTTGTATGACGGTAC 58.967 44.000 0.00 0.00 37.80 3.34
2826 8192 5.711506 TGTCTTTAGTCCTTGTATGACGGTA 59.288 40.000 0.00 0.00 37.80 4.02
2827 8193 4.525487 TGTCTTTAGTCCTTGTATGACGGT 59.475 41.667 0.00 0.00 37.80 4.83
2828 8194 5.068234 TGTCTTTAGTCCTTGTATGACGG 57.932 43.478 0.00 0.00 37.80 4.79
2829 8195 5.950883 TCTGTCTTTAGTCCTTGTATGACG 58.049 41.667 0.00 0.00 37.80 4.35
2830 8196 8.035394 TCAATCTGTCTTTAGTCCTTGTATGAC 58.965 37.037 0.00 0.00 0.00 3.06
2831 8197 8.134202 TCAATCTGTCTTTAGTCCTTGTATGA 57.866 34.615 0.00 0.00 0.00 2.15
2832 8198 8.954950 ATCAATCTGTCTTTAGTCCTTGTATG 57.045 34.615 0.00 0.00 0.00 2.39
2835 8201 9.442047 CTTAATCAATCTGTCTTTAGTCCTTGT 57.558 33.333 0.00 0.00 0.00 3.16
2836 8202 8.887717 CCTTAATCAATCTGTCTTTAGTCCTTG 58.112 37.037 0.00 0.00 0.00 3.61
2837 8203 7.554476 GCCTTAATCAATCTGTCTTTAGTCCTT 59.446 37.037 0.00 0.00 0.00 3.36
2838 8204 7.051000 GCCTTAATCAATCTGTCTTTAGTCCT 58.949 38.462 0.00 0.00 0.00 3.85
2839 8205 6.823689 TGCCTTAATCAATCTGTCTTTAGTCC 59.176 38.462 0.00 0.00 0.00 3.85
2840 8206 7.849804 TGCCTTAATCAATCTGTCTTTAGTC 57.150 36.000 0.00 0.00 0.00 2.59
2841 8207 7.885399 ACTTGCCTTAATCAATCTGTCTTTAGT 59.115 33.333 0.00 0.00 0.00 2.24
2842 8208 8.273780 ACTTGCCTTAATCAATCTGTCTTTAG 57.726 34.615 0.00 0.00 0.00 1.85
2843 8209 8.514594 CAACTTGCCTTAATCAATCTGTCTTTA 58.485 33.333 0.00 0.00 0.00 1.85
2844 8210 7.373493 CAACTTGCCTTAATCAATCTGTCTTT 58.627 34.615 0.00 0.00 0.00 2.52
2845 8211 6.571150 GCAACTTGCCTTAATCAATCTGTCTT 60.571 38.462 1.95 0.00 37.42 3.01
2846 8212 5.105997 GCAACTTGCCTTAATCAATCTGTCT 60.106 40.000 1.95 0.00 37.42 3.41
2847 8213 5.098211 GCAACTTGCCTTAATCAATCTGTC 58.902 41.667 1.95 0.00 37.42 3.51
2848 8214 4.523943 TGCAACTTGCCTTAATCAATCTGT 59.476 37.500 11.29 0.00 44.23 3.41
2849 8215 5.063180 TGCAACTTGCCTTAATCAATCTG 57.937 39.130 11.29 0.00 44.23 2.90
2850 8216 5.244626 ACTTGCAACTTGCCTTAATCAATCT 59.755 36.000 11.29 0.00 44.23 2.40
2851 8217 5.473039 ACTTGCAACTTGCCTTAATCAATC 58.527 37.500 11.29 0.00 44.23 2.67
2852 8218 5.473066 ACTTGCAACTTGCCTTAATCAAT 57.527 34.783 11.29 0.00 44.23 2.57
2853 8219 4.935352 ACTTGCAACTTGCCTTAATCAA 57.065 36.364 11.29 0.00 44.23 2.57
2854 8220 4.458989 CCTACTTGCAACTTGCCTTAATCA 59.541 41.667 11.29 0.00 44.23 2.57
2855 8221 4.142381 CCCTACTTGCAACTTGCCTTAATC 60.142 45.833 11.29 0.00 44.23 1.75
2856 8222 3.763897 CCCTACTTGCAACTTGCCTTAAT 59.236 43.478 11.29 0.00 44.23 1.40
2857 8223 3.153919 CCCTACTTGCAACTTGCCTTAA 58.846 45.455 11.29 0.00 44.23 1.85
2858 8224 2.107552 ACCCTACTTGCAACTTGCCTTA 59.892 45.455 11.29 0.00 44.23 2.69
2859 8225 1.133482 ACCCTACTTGCAACTTGCCTT 60.133 47.619 11.29 0.00 44.23 4.35
2860 8226 0.478507 ACCCTACTTGCAACTTGCCT 59.521 50.000 11.29 0.00 44.23 4.75
2861 8227 1.328279 AACCCTACTTGCAACTTGCC 58.672 50.000 11.29 0.00 44.23 4.52
2862 8228 2.100749 ACAAACCCTACTTGCAACTTGC 59.899 45.455 6.82 6.82 45.29 4.01
2863 8229 3.705604 CACAAACCCTACTTGCAACTTG 58.294 45.455 0.00 0.00 0.00 3.16
2864 8230 2.100749 GCACAAACCCTACTTGCAACTT 59.899 45.455 0.00 0.00 33.24 2.66
2865 8231 1.681264 GCACAAACCCTACTTGCAACT 59.319 47.619 0.00 0.00 33.24 3.16
2866 8232 1.269569 GGCACAAACCCTACTTGCAAC 60.270 52.381 0.00 0.00 34.76 4.17
2867 8233 1.036707 GGCACAAACCCTACTTGCAA 58.963 50.000 0.00 0.00 34.76 4.08
2868 8234 0.106469 TGGCACAAACCCTACTTGCA 60.106 50.000 0.00 0.00 34.76 4.08
2869 8235 2.727103 TGGCACAAACCCTACTTGC 58.273 52.632 0.00 0.00 31.92 4.01
2882 8248 1.438651 TGTCTTCTTACGCATGGCAC 58.561 50.000 0.00 0.00 0.00 5.01
2883 8249 2.076100 CTTGTCTTCTTACGCATGGCA 58.924 47.619 0.00 0.00 0.00 4.92
2884 8250 2.094417 GTCTTGTCTTCTTACGCATGGC 59.906 50.000 0.00 0.00 0.00 4.40
2885 8251 2.345641 CGTCTTGTCTTCTTACGCATGG 59.654 50.000 0.00 0.00 0.00 3.66
2886 8252 3.242518 TCGTCTTGTCTTCTTACGCATG 58.757 45.455 0.00 0.00 33.75 4.06
2887 8253 3.570926 TCGTCTTGTCTTCTTACGCAT 57.429 42.857 0.00 0.00 33.75 4.73
2888 8254 3.057806 TCATCGTCTTGTCTTCTTACGCA 60.058 43.478 0.00 0.00 33.75 5.24
2889 8255 3.301116 GTCATCGTCTTGTCTTCTTACGC 59.699 47.826 0.00 0.00 33.75 4.42
2890 8256 3.538782 CGTCATCGTCTTGTCTTCTTACG 59.461 47.826 0.00 0.00 34.99 3.18
2891 8257 3.852536 CCGTCATCGTCTTGTCTTCTTAC 59.147 47.826 0.00 0.00 35.01 2.34
2892 8258 3.672511 GCCGTCATCGTCTTGTCTTCTTA 60.673 47.826 0.00 0.00 35.01 2.10
2893 8259 2.927014 GCCGTCATCGTCTTGTCTTCTT 60.927 50.000 0.00 0.00 35.01 2.52
2894 8260 1.402984 GCCGTCATCGTCTTGTCTTCT 60.403 52.381 0.00 0.00 35.01 2.85
2895 8261 0.992802 GCCGTCATCGTCTTGTCTTC 59.007 55.000 0.00 0.00 35.01 2.87
2896 8262 0.603569 AGCCGTCATCGTCTTGTCTT 59.396 50.000 0.00 0.00 35.01 3.01
2897 8263 0.603569 AAGCCGTCATCGTCTTGTCT 59.396 50.000 0.00 0.00 34.02 3.41
2898 8264 1.429463 AAAGCCGTCATCGTCTTGTC 58.571 50.000 0.00 0.00 35.47 3.18
2899 8265 1.878953 AAAAGCCGTCATCGTCTTGT 58.121 45.000 0.00 0.00 35.47 3.16
2900 8266 2.969443 AAAAAGCCGTCATCGTCTTG 57.031 45.000 0.00 0.00 35.47 3.02
2901 8267 4.753107 TCTTTAAAAAGCCGTCATCGTCTT 59.247 37.500 0.00 0.00 36.84 3.01
2902 8268 4.312443 TCTTTAAAAAGCCGTCATCGTCT 58.688 39.130 0.00 0.00 35.99 4.18
2903 8269 4.657075 TCTTTAAAAAGCCGTCATCGTC 57.343 40.909 0.00 0.00 35.99 4.20
2904 8270 4.693566 TCATCTTTAAAAAGCCGTCATCGT 59.306 37.500 0.00 0.00 35.99 3.73
2905 8271 5.216566 TCATCTTTAAAAAGCCGTCATCG 57.783 39.130 0.00 0.00 35.99 3.84
2906 8272 9.567848 TTATTTCATCTTTAAAAAGCCGTCATC 57.432 29.630 0.00 0.00 35.99 2.92
2907 8273 9.573133 CTTATTTCATCTTTAAAAAGCCGTCAT 57.427 29.630 0.00 0.00 35.99 3.06
2908 8274 8.026607 CCTTATTTCATCTTTAAAAAGCCGTCA 58.973 33.333 0.00 0.00 35.99 4.35
2909 8275 8.027189 ACCTTATTTCATCTTTAAAAAGCCGTC 58.973 33.333 0.00 0.00 35.99 4.79
2910 8276 7.892609 ACCTTATTTCATCTTTAAAAAGCCGT 58.107 30.769 0.00 0.00 35.99 5.68
2911 8277 7.488150 GGACCTTATTTCATCTTTAAAAAGCCG 59.512 37.037 0.00 0.00 35.99 5.52
2912 8278 8.531982 AGGACCTTATTTCATCTTTAAAAAGCC 58.468 33.333 0.00 0.00 35.99 4.35
2913 8279 9.574458 GAGGACCTTATTTCATCTTTAAAAAGC 57.426 33.333 0.00 0.00 35.99 3.51
2915 8281 9.031537 GGGAGGACCTTATTTCATCTTTAAAAA 57.968 33.333 0.00 0.00 35.85 1.94
2916 8282 7.618117 GGGGAGGACCTTATTTCATCTTTAAAA 59.382 37.037 0.00 0.00 40.03 1.52
2917 8283 7.123383 GGGGAGGACCTTATTTCATCTTTAAA 58.877 38.462 0.00 0.00 40.03 1.52
2918 8284 6.354477 GGGGGAGGACCTTATTTCATCTTTAA 60.354 42.308 0.00 0.00 40.03 1.52
2919 8285 5.133830 GGGGGAGGACCTTATTTCATCTTTA 59.866 44.000 0.00 0.00 40.03 1.85
2920 8286 4.079154 GGGGGAGGACCTTATTTCATCTTT 60.079 45.833 0.00 0.00 40.03 2.52
2921 8287 3.463704 GGGGGAGGACCTTATTTCATCTT 59.536 47.826 0.00 0.00 40.03 2.40
2922 8288 3.056832 GGGGGAGGACCTTATTTCATCT 58.943 50.000 0.00 0.00 40.03 2.90
2923 8289 3.510531 GGGGGAGGACCTTATTTCATC 57.489 52.381 0.00 0.00 40.03 2.92
2946 8312 2.758737 AGAACGGCGACTAGGGGG 60.759 66.667 16.62 0.00 0.00 5.40
2947 8313 2.494918 CAGAACGGCGACTAGGGG 59.505 66.667 16.62 0.00 0.00 4.79
2948 8314 2.348888 ACCAGAACGGCGACTAGGG 61.349 63.158 16.62 12.88 39.03 3.53
2949 8315 1.153823 CACCAGAACGGCGACTAGG 60.154 63.158 16.62 16.91 39.03 3.02
2950 8316 0.456221 ATCACCAGAACGGCGACTAG 59.544 55.000 16.62 8.30 39.03 2.57
2951 8317 0.172578 CATCACCAGAACGGCGACTA 59.827 55.000 16.62 0.00 39.03 2.59
2952 8318 1.079819 CATCACCAGAACGGCGACT 60.080 57.895 16.62 9.91 39.03 4.18
2953 8319 0.949105 AACATCACCAGAACGGCGAC 60.949 55.000 16.62 7.38 39.03 5.19
2954 8320 1.369692 AACATCACCAGAACGGCGA 59.630 52.632 16.62 0.00 39.03 5.54
2955 8321 3.966215 AACATCACCAGAACGGCG 58.034 55.556 4.80 4.80 39.03 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.