Multiple sequence alignment - TraesCS7A01G327100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G327100 chr7A 100.000 2864 0 0 1 2864 475207542 475204679 0.000000e+00 5289.0
1 TraesCS7A01G327100 chr7B 93.067 2077 114 13 1 2059 405970963 405968899 0.000000e+00 3011.0
2 TraesCS7A01G327100 chr7B 91.360 2037 119 24 34 2046 427885582 427883579 0.000000e+00 2734.0
3 TraesCS7A01G327100 chr7B 95.580 181 5 1 2684 2864 427882858 427882681 1.300000e-73 287.0
4 TraesCS7A01G327100 chr7B 89.796 147 7 4 2719 2864 405968143 405968004 6.300000e-42 182.0
5 TraesCS7A01G327100 chr7B 79.710 207 18 13 2157 2350 427883390 427883195 8.330000e-26 128.0
6 TraesCS7A01G327100 chr7B 88.372 86 2 1 2557 2634 427883122 427883037 2.350000e-16 97.1
7 TraesCS7A01G327100 chr7B 82.031 128 7 6 2157 2284 405968730 405968619 8.450000e-16 95.3
8 TraesCS7A01G327100 chr7B 85.938 64 6 3 2378 2440 494163559 494163620 6.620000e-07 65.8
9 TraesCS7A01G327100 chr7D 93.598 1812 80 20 567 2363 413545576 413543786 0.000000e+00 2671.0
10 TraesCS7A01G327100 chr7D 93.309 538 28 2 30 567 413546172 413545643 0.000000e+00 787.0
11 TraesCS7A01G327100 chr7D 96.703 182 6 0 2683 2864 413535539 413535358 1.290000e-78 303.0
12 TraesCS7A01G327100 chr7D 87.500 64 7 1 2383 2446 599221520 599221582 3.960000e-09 73.1
13 TraesCS7A01G327100 chr2B 95.918 49 2 0 520 568 122712545 122712497 2.370000e-11 80.5
14 TraesCS7A01G327100 chr2B 84.722 72 9 2 2382 2452 239501376 239501446 1.420000e-08 71.3
15 TraesCS7A01G327100 chr2B 88.136 59 5 2 2383 2440 668673683 668673740 5.120000e-08 69.4
16 TraesCS7A01G327100 chrUn 95.833 48 2 0 522 569 65440858 65440905 8.510000e-11 78.7
17 TraesCS7A01G327100 chr4A 92.727 55 2 2 513 567 330086764 330086816 8.510000e-11 78.7
18 TraesCS7A01G327100 chr3D 91.071 56 3 2 514 567 92261910 92261965 1.100000e-09 75.0
19 TraesCS7A01G327100 chr3D 89.655 58 4 2 514 569 91831035 91831092 3.960000e-09 73.1
20 TraesCS7A01G327100 chr6A 89.655 58 5 1 2383 2440 13570797 13570741 3.960000e-09 73.1
21 TraesCS7A01G327100 chr5D 90.909 55 4 1 513 567 396452331 396452384 3.960000e-09 73.1
22 TraesCS7A01G327100 chr5B 89.474 57 5 1 2383 2439 712376738 712376683 1.420000e-08 71.3
23 TraesCS7A01G327100 chr3B 88.333 60 4 3 2383 2441 75361019 75361076 5.120000e-08 69.4
24 TraesCS7A01G327100 chr5A 86.154 65 6 3 2383 2445 630030116 630030053 1.840000e-07 67.6
25 TraesCS7A01G327100 chr4B 85.075 67 6 4 2383 2446 450560242 450560307 6.620000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G327100 chr7A 475204679 475207542 2863 True 5289.000 5289 100.0000 1 2864 1 chr7A.!!$R1 2863
1 TraesCS7A01G327100 chr7B 405968004 405970963 2959 True 1096.100 3011 88.2980 1 2864 3 chr7B.!!$R1 2863
2 TraesCS7A01G327100 chr7B 427882681 427885582 2901 True 811.525 2734 88.7555 34 2864 4 chr7B.!!$R2 2830
3 TraesCS7A01G327100 chr7D 413543786 413546172 2386 True 1729.000 2671 93.4535 30 2363 2 chr7D.!!$R2 2333

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
380 393 0.76489 ACCAGTTGCTACTTGCTCCA 59.235 50.0 0.0 0.0 43.37 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2276 2459 0.388649 AGGCGAGCTACAGACGTTTG 60.389 55.0 4.25 4.25 0.0 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 4.222810 GGCTTGTTTGGGGATTATTTCTGT 59.777 41.667 0.00 0.00 0.00 3.41
106 107 4.822026 ACTACGAACTAGAGCAAGCAAAT 58.178 39.130 0.00 0.00 0.00 2.32
190 199 4.282068 CACACGAGTTTGATTTGAGTTGG 58.718 43.478 0.00 0.00 0.00 3.77
198 207 1.203288 TGATTTGAGTTGGCCCCCATT 60.203 47.619 0.00 0.00 31.53 3.16
285 298 1.217882 CCGTCCCATCATTTAGTCGC 58.782 55.000 0.00 0.00 0.00 5.19
347 360 6.340962 TCATTGATTCCCCTACATAGTACG 57.659 41.667 0.00 0.00 0.00 3.67
372 385 5.401674 GCTACACGATAATACCAGTTGCTAC 59.598 44.000 0.00 0.00 0.00 3.58
377 390 5.050490 CGATAATACCAGTTGCTACTTGCT 58.950 41.667 0.00 0.00 43.37 3.91
378 391 5.175856 CGATAATACCAGTTGCTACTTGCTC 59.824 44.000 0.00 0.00 43.37 4.26
379 392 2.762535 TACCAGTTGCTACTTGCTCC 57.237 50.000 0.00 0.00 43.37 4.70
380 393 0.764890 ACCAGTTGCTACTTGCTCCA 59.235 50.000 0.00 0.00 43.37 3.86
381 394 1.142870 ACCAGTTGCTACTTGCTCCAA 59.857 47.619 0.00 0.00 43.37 3.53
382 395 2.224867 ACCAGTTGCTACTTGCTCCAAT 60.225 45.455 0.00 0.00 43.37 3.16
383 396 2.821969 CCAGTTGCTACTTGCTCCAATT 59.178 45.455 0.00 0.00 43.37 2.32
561 579 2.573941 AGTGTCGCCGATTTAGTACC 57.426 50.000 0.00 0.00 0.00 3.34
792 884 8.175069 CGTTCTTCTCTCTCTATCATATACAGC 58.825 40.741 0.00 0.00 0.00 4.40
821 913 6.833839 TGTTTCGTAAGGTAATATGTTGCAC 58.166 36.000 0.00 0.00 38.47 4.57
1112 1205 4.723789 AGATATGGATGTTCAGGAACCACT 59.276 41.667 9.49 0.00 40.46 4.00
1141 1234 1.679139 TTCCATTGATCCATCACGGC 58.321 50.000 0.00 0.00 36.36 5.68
1333 1426 3.071312 TGCCACAAAGAAGCATCCAAAAT 59.929 39.130 0.00 0.00 0.00 1.82
1390 1483 0.729116 CGACGCCTGCATCAAGAAAT 59.271 50.000 0.00 0.00 0.00 2.17
1398 1491 3.064545 CCTGCATCAAGAAATCTCGAACC 59.935 47.826 0.00 0.00 0.00 3.62
1442 1535 6.619801 TCATGAAGATGATGCAAAGATGAG 57.380 37.500 0.00 0.00 33.40 2.90
1472 1565 3.946201 ACGAAGTGCTGCTGCCCT 61.946 61.111 13.47 3.59 42.51 5.19
1481 1574 0.673437 GCTGCTGCCCTTGTTGTAAA 59.327 50.000 3.85 0.00 0.00 2.01
1488 1581 3.476552 TGCCCTTGTTGTAAAGTCTGAG 58.523 45.455 0.00 0.00 0.00 3.35
1531 1624 2.027192 GCTGTTGAAGGACTGTCCCATA 60.027 50.000 22.81 6.81 37.19 2.74
1539 1632 1.282157 GGACTGTCCCATAAAGCCACT 59.718 52.381 16.14 0.00 0.00 4.00
1563 1656 1.166531 AAGCAACAAGTCCACTCGGC 61.167 55.000 0.00 0.00 0.00 5.54
1582 1675 2.158623 GGCAACATGTATGATCCTGGGA 60.159 50.000 0.00 0.00 0.00 4.37
1588 1681 2.134354 TGTATGATCCTGGGATGCCAA 58.866 47.619 7.59 0.00 34.60 4.52
1709 1802 4.440802 CGGTCTTGGATGGTTTGTCAAAAA 60.441 41.667 0.00 0.00 0.00 1.94
1807 1900 1.706443 CGTAGGACCACGGAGAAAAC 58.294 55.000 8.15 0.00 38.26 2.43
1828 1921 6.932356 AACTAATCCATGCTATTGACAGTG 57.068 37.500 0.00 0.00 0.00 3.66
1896 1993 8.921670 GTGTGTTTCAGTTTGTTAGATGTTTTT 58.078 29.630 0.00 0.00 0.00 1.94
1904 2001 9.341899 CAGTTTGTTAGATGTTTTTATGGTAGC 57.658 33.333 0.00 0.00 0.00 3.58
1910 2007 6.515272 AGATGTTTTTATGGTAGCCAGTTG 57.485 37.500 0.00 0.00 36.75 3.16
1918 2015 2.884320 TGGTAGCCAGTTGAGTGACTA 58.116 47.619 0.00 0.00 0.00 2.59
1936 2033 5.007682 TGACTACAGCCGTATGCATATCTA 58.992 41.667 10.16 0.00 44.83 1.98
1938 2035 5.895928 ACTACAGCCGTATGCATATCTATG 58.104 41.667 10.16 9.57 44.83 2.23
1952 2049 6.000219 GCATATCTATGGAGTGGTTTGATGT 59.000 40.000 0.00 0.00 34.32 3.06
2027 2125 8.522178 AGTAGAAAATTAGAAGACAACAGTCG 57.478 34.615 0.00 0.00 37.36 4.18
2042 2140 1.214062 GTCGGACCTGCTCTGTGAG 59.786 63.158 0.00 0.00 0.00 3.51
2046 2144 1.959985 CGGACCTGCTCTGTGAGATAT 59.040 52.381 0.00 0.00 0.00 1.63
2047 2145 2.030363 CGGACCTGCTCTGTGAGATATC 60.030 54.545 0.00 0.00 0.00 1.63
2048 2146 2.298729 GGACCTGCTCTGTGAGATATCC 59.701 54.545 0.00 0.00 0.00 2.59
2049 2147 2.961741 GACCTGCTCTGTGAGATATCCA 59.038 50.000 0.00 0.00 0.00 3.41
2050 2148 3.577848 GACCTGCTCTGTGAGATATCCAT 59.422 47.826 0.00 0.00 0.00 3.41
2051 2149 3.972638 ACCTGCTCTGTGAGATATCCATT 59.027 43.478 0.00 0.00 0.00 3.16
2052 2150 4.202336 ACCTGCTCTGTGAGATATCCATTG 60.202 45.833 0.00 0.00 0.00 2.82
2053 2151 4.202336 CCTGCTCTGTGAGATATCCATTGT 60.202 45.833 0.00 0.00 0.00 2.71
2054 2152 5.011431 CCTGCTCTGTGAGATATCCATTGTA 59.989 44.000 0.00 0.00 0.00 2.41
2061 2162 8.097038 TCTGTGAGATATCCATTGTAATAAGCC 58.903 37.037 0.00 0.00 0.00 4.35
2080 2181 4.682787 AGCCTTTAAAAGTGCAAACTGAC 58.317 39.130 0.00 0.00 0.00 3.51
2092 2193 6.010219 AGTGCAAACTGACTTGGGTTATATT 58.990 36.000 0.00 0.00 0.00 1.28
2093 2194 7.172342 AGTGCAAACTGACTTGGGTTATATTA 58.828 34.615 0.00 0.00 0.00 0.98
2095 2196 8.129211 GTGCAAACTGACTTGGGTTATATTATC 58.871 37.037 0.00 0.00 0.00 1.75
2096 2197 8.052748 TGCAAACTGACTTGGGTTATATTATCT 58.947 33.333 0.00 0.00 0.00 1.98
2276 2459 4.572389 ACTCTGGTTATCGTTGATGAATGC 59.428 41.667 0.00 0.00 0.00 3.56
2286 2469 3.606846 CGTTGATGAATGCAAACGTCTGT 60.607 43.478 10.20 0.00 0.00 3.41
2288 2471 4.926860 TGATGAATGCAAACGTCTGTAG 57.073 40.909 13.93 0.00 0.00 2.74
2291 2474 2.736721 TGAATGCAAACGTCTGTAGCTC 59.263 45.455 0.00 0.00 32.31 4.09
2301 2496 0.814410 TCTGTAGCTCGCCTACCTCG 60.814 60.000 0.00 0.00 44.77 4.63
2309 2504 1.007964 CGCCTACCTCGCTCATCTG 60.008 63.158 0.00 0.00 0.00 2.90
2313 2508 0.671251 CTACCTCGCTCATCTGTCCC 59.329 60.000 0.00 0.00 0.00 4.46
2314 2509 0.259065 TACCTCGCTCATCTGTCCCT 59.741 55.000 0.00 0.00 0.00 4.20
2319 2514 0.534412 CGCTCATCTGTCCCTCAAGT 59.466 55.000 0.00 0.00 0.00 3.16
2335 2530 1.067985 CAAGTCTCTCTGCTCTGCGAA 60.068 52.381 0.00 0.00 0.00 4.70
2336 2531 0.525761 AGTCTCTCTGCTCTGCGAAC 59.474 55.000 0.00 0.00 0.00 3.95
2365 2560 4.591321 AAAAAGTCTATGCTCATCCCCA 57.409 40.909 0.00 0.00 0.00 4.96
2366 2561 3.853355 AAAGTCTATGCTCATCCCCAG 57.147 47.619 0.00 0.00 0.00 4.45
2367 2562 2.485966 AGTCTATGCTCATCCCCAGT 57.514 50.000 0.00 0.00 0.00 4.00
2378 2573 1.138661 CATCCCCAGTTCTCTCTGCTC 59.861 57.143 0.00 0.00 34.47 4.26
2379 2574 0.411452 TCCCCAGTTCTCTCTGCTCT 59.589 55.000 0.00 0.00 34.47 4.09
2380 2575 1.641192 TCCCCAGTTCTCTCTGCTCTA 59.359 52.381 0.00 0.00 34.47 2.43
2381 2576 2.043115 TCCCCAGTTCTCTCTGCTCTAA 59.957 50.000 0.00 0.00 34.47 2.10
2382 2577 3.037549 CCCCAGTTCTCTCTGCTCTAAT 58.962 50.000 0.00 0.00 34.47 1.73
2383 2578 3.181467 CCCCAGTTCTCTCTGCTCTAATG 60.181 52.174 0.00 0.00 34.47 1.90
2384 2579 3.181467 CCCAGTTCTCTCTGCTCTAATGG 60.181 52.174 0.00 0.00 34.47 3.16
2385 2580 3.456280 CAGTTCTCTCTGCTCTAATGGC 58.544 50.000 0.00 0.00 0.00 4.40
2386 2581 2.433970 AGTTCTCTCTGCTCTAATGGCC 59.566 50.000 0.00 0.00 0.00 5.36
2387 2582 1.035923 TCTCTCTGCTCTAATGGCCG 58.964 55.000 0.00 0.00 0.00 6.13
2388 2583 0.749649 CTCTCTGCTCTAATGGCCGT 59.250 55.000 0.00 0.00 0.00 5.68
2389 2584 1.957177 CTCTCTGCTCTAATGGCCGTA 59.043 52.381 0.00 0.00 0.00 4.02
2390 2585 2.560542 CTCTCTGCTCTAATGGCCGTAT 59.439 50.000 0.00 0.00 0.00 3.06
2391 2586 2.297315 TCTCTGCTCTAATGGCCGTATG 59.703 50.000 0.00 0.00 0.00 2.39
2392 2587 1.151668 CTGCTCTAATGGCCGTATGC 58.848 55.000 0.00 0.97 40.16 3.14
2393 2588 0.467804 TGCTCTAATGGCCGTATGCA 59.532 50.000 0.00 3.88 43.89 3.96
2394 2589 1.072173 TGCTCTAATGGCCGTATGCAT 59.928 47.619 3.79 3.79 43.89 3.96
2395 2590 1.734465 GCTCTAATGGCCGTATGCATC 59.266 52.381 0.19 0.00 43.89 3.91
2396 2591 1.995484 CTCTAATGGCCGTATGCATCG 59.005 52.381 0.19 7.03 43.89 3.84
2397 2592 1.343142 TCTAATGGCCGTATGCATCGT 59.657 47.619 0.19 0.00 43.89 3.73
2398 2593 2.143122 CTAATGGCCGTATGCATCGTT 58.857 47.619 0.19 0.00 43.89 3.85
2399 2594 0.944386 AATGGCCGTATGCATCGTTC 59.056 50.000 0.19 2.49 43.89 3.95
2400 2595 0.106708 ATGGCCGTATGCATCGTTCT 59.893 50.000 0.19 0.00 43.89 3.01
2401 2596 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
2402 2597 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
2403 2598 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
2413 2608 1.847328 TCGTTCTGATGTAGAGGCCA 58.153 50.000 5.01 0.00 36.61 5.36
2414 2609 1.751351 TCGTTCTGATGTAGAGGCCAG 59.249 52.381 5.01 0.00 36.61 4.85
2415 2610 1.202463 CGTTCTGATGTAGAGGCCAGG 60.202 57.143 5.01 0.00 36.61 4.45
2416 2611 1.139853 GTTCTGATGTAGAGGCCAGGG 59.860 57.143 5.01 0.00 36.61 4.45
2417 2612 0.399091 TCTGATGTAGAGGCCAGGGG 60.399 60.000 5.01 0.00 0.00 4.79
2418 2613 0.692419 CTGATGTAGAGGCCAGGGGT 60.692 60.000 5.01 0.00 0.00 4.95
2419 2614 0.253160 TGATGTAGAGGCCAGGGGTT 60.253 55.000 5.01 0.00 0.00 4.11
2420 2615 0.919710 GATGTAGAGGCCAGGGGTTT 59.080 55.000 5.01 0.00 0.00 3.27
2421 2616 1.285078 GATGTAGAGGCCAGGGGTTTT 59.715 52.381 5.01 0.00 0.00 2.43
2422 2617 1.154430 TGTAGAGGCCAGGGGTTTTT 58.846 50.000 5.01 0.00 0.00 1.94
2423 2618 1.074889 TGTAGAGGCCAGGGGTTTTTC 59.925 52.381 5.01 0.00 0.00 2.29
2424 2619 1.354705 GTAGAGGCCAGGGGTTTTTCT 59.645 52.381 5.01 0.00 0.00 2.52
2425 2620 0.860457 AGAGGCCAGGGGTTTTTCTT 59.140 50.000 5.01 0.00 0.00 2.52
2426 2621 1.203063 AGAGGCCAGGGGTTTTTCTTC 60.203 52.381 5.01 0.00 0.00 2.87
2427 2622 0.860457 AGGCCAGGGGTTTTTCTTCT 59.140 50.000 5.01 0.00 0.00 2.85
2428 2623 1.220493 AGGCCAGGGGTTTTTCTTCTT 59.780 47.619 5.01 0.00 0.00 2.52
2429 2624 2.047061 GGCCAGGGGTTTTTCTTCTTT 58.953 47.619 0.00 0.00 0.00 2.52
2430 2625 2.438021 GGCCAGGGGTTTTTCTTCTTTT 59.562 45.455 0.00 0.00 0.00 2.27
2431 2626 3.494398 GGCCAGGGGTTTTTCTTCTTTTC 60.494 47.826 0.00 0.00 0.00 2.29
2432 2627 3.133901 GCCAGGGGTTTTTCTTCTTTTCA 59.866 43.478 0.00 0.00 0.00 2.69
2433 2628 4.383661 GCCAGGGGTTTTTCTTCTTTTCAA 60.384 41.667 0.00 0.00 0.00 2.69
2434 2629 5.739959 CCAGGGGTTTTTCTTCTTTTCAAA 58.260 37.500 0.00 0.00 0.00 2.69
2435 2630 6.176896 CCAGGGGTTTTTCTTCTTTTCAAAA 58.823 36.000 0.00 0.00 0.00 2.44
2436 2631 6.657117 CCAGGGGTTTTTCTTCTTTTCAAAAA 59.343 34.615 0.00 0.00 0.00 1.94
2467 2662 5.948742 AAAAATCCCCAGTTCTGTCAAAA 57.051 34.783 0.00 0.00 0.00 2.44
2468 2663 6.499106 AAAAATCCCCAGTTCTGTCAAAAT 57.501 33.333 0.00 0.00 0.00 1.82
2469 2664 5.728637 AAATCCCCAGTTCTGTCAAAATC 57.271 39.130 0.00 0.00 0.00 2.17
2470 2665 3.154827 TCCCCAGTTCTGTCAAAATCC 57.845 47.619 0.00 0.00 0.00 3.01
2471 2666 1.812571 CCCCAGTTCTGTCAAAATCCG 59.187 52.381 0.00 0.00 0.00 4.18
2474 2669 2.293122 CCAGTTCTGTCAAAATCCGCAA 59.707 45.455 0.00 0.00 0.00 4.85
2495 2714 3.614568 ATCCTACCGAGAACCCTACAT 57.385 47.619 0.00 0.00 0.00 2.29
2497 2716 3.028850 TCCTACCGAGAACCCTACATTG 58.971 50.000 0.00 0.00 0.00 2.82
2506 2725 1.227383 CCCTACATTGGGGCCTCAC 59.773 63.158 3.60 0.00 43.45 3.51
2507 2726 1.153168 CCTACATTGGGGCCTCACG 60.153 63.158 3.60 0.97 0.00 4.35
2509 2728 0.469917 CTACATTGGGGCCTCACGAT 59.530 55.000 3.60 0.00 0.00 3.73
2510 2729 0.916086 TACATTGGGGCCTCACGATT 59.084 50.000 3.60 0.00 0.00 3.34
2511 2730 0.680921 ACATTGGGGCCTCACGATTG 60.681 55.000 3.60 3.31 0.00 2.67
2512 2731 1.076777 ATTGGGGCCTCACGATTGG 60.077 57.895 3.60 0.00 0.00 3.16
2513 2732 2.572333 ATTGGGGCCTCACGATTGGG 62.572 60.000 3.60 0.00 0.00 4.12
2514 2733 3.407967 GGGGCCTCACGATTGGGA 61.408 66.667 0.84 0.00 0.00 4.37
2515 2734 2.757124 GGGGCCTCACGATTGGGAT 61.757 63.158 0.84 0.00 0.00 3.85
2516 2735 1.227973 GGGCCTCACGATTGGGATC 60.228 63.158 0.84 0.00 0.00 3.36
2517 2736 1.700042 GGGCCTCACGATTGGGATCT 61.700 60.000 0.84 0.00 0.00 2.75
2518 2737 1.048601 GGCCTCACGATTGGGATCTA 58.951 55.000 0.00 0.00 0.00 1.98
2519 2738 1.001406 GGCCTCACGATTGGGATCTAG 59.999 57.143 0.00 0.00 0.00 2.43
2520 2739 1.964223 GCCTCACGATTGGGATCTAGA 59.036 52.381 0.00 0.00 0.00 2.43
2521 2740 2.029470 GCCTCACGATTGGGATCTAGAG 60.029 54.545 0.00 0.00 33.86 2.43
2522 2741 2.029470 CCTCACGATTGGGATCTAGAGC 60.029 54.545 0.00 0.00 33.27 4.09
2523 2742 1.964223 TCACGATTGGGATCTAGAGCC 59.036 52.381 19.14 19.14 35.80 4.70
2524 2743 1.967066 CACGATTGGGATCTAGAGCCT 59.033 52.381 25.57 7.00 37.00 4.58
2525 2744 3.157881 CACGATTGGGATCTAGAGCCTA 58.842 50.000 25.57 18.22 37.00 3.93
2526 2745 3.192422 CACGATTGGGATCTAGAGCCTAG 59.808 52.174 25.57 11.32 37.00 3.02
2527 2746 2.757868 CGATTGGGATCTAGAGCCTAGG 59.242 54.545 25.57 3.67 37.00 3.02
2528 2747 3.785364 GATTGGGATCTAGAGCCTAGGT 58.215 50.000 25.57 12.82 37.00 3.08
2529 2748 3.708236 TTGGGATCTAGAGCCTAGGTT 57.292 47.619 25.57 3.54 37.00 3.50
2530 2749 2.964209 TGGGATCTAGAGCCTAGGTTG 58.036 52.381 25.57 0.00 37.00 3.77
2531 2750 1.621317 GGGATCTAGAGCCTAGGTTGC 59.379 57.143 25.57 4.26 37.00 4.17
2532 2751 2.320781 GGATCTAGAGCCTAGGTTGCA 58.679 52.381 20.01 0.00 33.23 4.08
2533 2752 2.903135 GGATCTAGAGCCTAGGTTGCAT 59.097 50.000 20.01 0.00 33.23 3.96
2534 2753 3.056179 GGATCTAGAGCCTAGGTTGCATC 60.056 52.174 20.01 5.03 33.23 3.91
2535 2754 2.320781 TCTAGAGCCTAGGTTGCATCC 58.679 52.381 11.31 5.61 0.00 3.51
2536 2755 1.000283 CTAGAGCCTAGGTTGCATCCG 60.000 57.143 11.31 0.00 0.00 4.18
2537 2756 1.889573 GAGCCTAGGTTGCATCCGC 60.890 63.158 11.31 6.16 39.24 5.54
2538 2757 2.902343 GCCTAGGTTGCATCCGCC 60.902 66.667 11.31 0.00 37.32 6.13
2539 2758 2.911143 CCTAGGTTGCATCCGCCT 59.089 61.111 8.17 6.53 37.32 5.52
2540 2759 2.040009 GCCTAGGTTGCATCCGCCTA 62.040 60.000 11.31 7.28 37.32 3.93
2541 2760 0.249911 CCTAGGTTGCATCCGCCTAC 60.250 60.000 8.17 0.00 37.32 3.18
2542 2761 0.597637 CTAGGTTGCATCCGCCTACG 60.598 60.000 8.17 0.00 37.32 3.51
2543 2762 2.638330 TAGGTTGCATCCGCCTACGC 62.638 60.000 8.17 0.00 38.22 4.42
2544 2763 2.817834 GTTGCATCCGCCTACGCA 60.818 61.111 0.00 0.00 38.22 5.24
2545 2764 2.817834 TTGCATCCGCCTACGCAC 60.818 61.111 0.00 0.00 38.22 5.34
2548 2767 2.508439 CATCCGCCTACGCACGTT 60.508 61.111 0.00 0.00 38.22 3.99
2549 2768 2.508439 ATCCGCCTACGCACGTTG 60.508 61.111 0.00 0.00 38.22 4.10
2550 2769 2.997075 ATCCGCCTACGCACGTTGA 61.997 57.895 0.00 0.00 38.22 3.18
2551 2770 2.495366 ATCCGCCTACGCACGTTGAA 62.495 55.000 0.00 0.00 38.22 2.69
2552 2771 2.468532 CGCCTACGCACGTTGAAC 59.531 61.111 0.00 0.00 34.03 3.18
2553 2772 2.858158 GCCTACGCACGTTGAACC 59.142 61.111 0.00 0.00 34.03 3.62
2554 2773 2.674084 GCCTACGCACGTTGAACCC 61.674 63.158 0.00 0.00 34.03 4.11
2555 2774 2.377310 CCTACGCACGTTGAACCCG 61.377 63.158 0.00 0.00 0.00 5.28
2636 2880 2.123428 GCTAGGTTGGCTGCATGGG 61.123 63.158 0.50 0.00 0.00 4.00
2647 2891 0.179073 CTGCATGGGACCGTCTAAGG 60.179 60.000 0.00 0.00 37.30 2.69
2652 2896 2.433146 GGGACCGTCTAAGGCCTCC 61.433 68.421 5.23 0.00 33.69 4.30
2750 3165 2.903855 CCATGGAGACCGGCATGC 60.904 66.667 9.90 9.90 0.00 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.341209 CCAAACAAGCCAGGGTTCTTC 59.659 52.381 0.00 0.00 0.00 2.87
53 54 1.202915 TGATTTCCTCAGCCACAGCAA 60.203 47.619 0.00 0.00 43.56 3.91
139 147 0.366871 CTTCTTGGTCAACGATCGCG 59.633 55.000 16.60 6.94 44.79 5.87
210 220 6.803366 AAGTTAATCTCTAATACCACCCGT 57.197 37.500 0.00 0.00 0.00 5.28
285 298 1.521010 CAGGAGCATCGACAGGCAG 60.521 63.158 8.09 0.00 34.37 4.85
347 360 3.493503 GCAACTGGTATTATCGTGTAGCC 59.506 47.826 0.00 0.00 0.00 3.93
372 385 4.692155 GGTCAAATTGGAAATTGGAGCAAG 59.308 41.667 12.30 0.00 0.00 4.01
732 824 8.924303 AGCAAGAGTGTAACATATTATGAGGTA 58.076 33.333 10.62 0.00 41.43 3.08
792 884 7.246674 ACATATTACCTTACGAAACAGCATG 57.753 36.000 0.00 0.00 46.00 4.06
1044 1137 6.317140 TCATAAACTGATGAACCTCTGAATGC 59.683 38.462 0.00 0.00 32.84 3.56
1112 1205 4.996793 TGGATCAATGGAAACCTCTGAAA 58.003 39.130 0.00 0.00 0.00 2.69
1141 1234 5.923114 CGTCCTCATCAACTATATTCACTGG 59.077 44.000 0.00 0.00 0.00 4.00
1378 1471 3.686241 CAGGTTCGAGATTTCTTGATGCA 59.314 43.478 0.00 0.00 36.35 3.96
1379 1472 3.486542 GCAGGTTCGAGATTTCTTGATGC 60.487 47.826 6.27 6.27 36.35 3.91
1380 1473 3.064545 GGCAGGTTCGAGATTTCTTGATG 59.935 47.826 0.00 0.00 36.35 3.07
1390 1483 0.541998 TCAGAAGGGCAGGTTCGAGA 60.542 55.000 0.00 0.00 0.00 4.04
1398 1491 4.279169 TGAACAATTCTTTCAGAAGGGCAG 59.721 41.667 0.00 0.00 37.69 4.85
1423 1516 3.568853 CCCCTCATCTTTGCATCATCTTC 59.431 47.826 0.00 0.00 0.00 2.87
1442 1535 0.531200 ACTTCGTGACGATTCTCCCC 59.469 55.000 9.08 0.00 35.23 4.81
1472 1565 5.353394 AGTCCACTCAGACTTTACAACAA 57.647 39.130 0.00 0.00 44.83 2.83
1531 1624 2.378038 TGTTGCTTTCTCAGTGGCTTT 58.622 42.857 0.00 0.00 0.00 3.51
1539 1632 3.206150 GAGTGGACTTGTTGCTTTCTCA 58.794 45.455 0.00 0.00 0.00 3.27
1563 1656 3.504906 GCATCCCAGGATCATACATGTTG 59.495 47.826 2.30 2.55 31.62 3.33
1582 1675 8.095792 TGTGACATTTGAAGAAATAATTGGCAT 58.904 29.630 0.00 0.00 30.63 4.40
1709 1802 4.044065 TCCCAATACCTTCACTGTCCAATT 59.956 41.667 0.00 0.00 0.00 2.32
1797 1890 4.222124 AGCATGGATTAGTTTTCTCCGT 57.778 40.909 0.00 0.00 31.36 4.69
1807 1900 6.202379 CAGACACTGTCAATAGCATGGATTAG 59.798 42.308 11.80 0.00 34.60 1.73
1828 1921 2.743928 CTGACCGGGCTTGCAGAC 60.744 66.667 9.82 0.00 0.00 3.51
1879 1972 8.520351 GGCTACCATAAAAACATCTAACAAACT 58.480 33.333 0.00 0.00 0.00 2.66
1896 1993 3.441101 AGTCACTCAACTGGCTACCATA 58.559 45.455 0.00 0.00 30.82 2.74
1900 1997 3.839293 CTGTAGTCACTCAACTGGCTAC 58.161 50.000 4.36 4.36 45.77 3.58
1904 2001 1.670087 CGGCTGTAGTCACTCAACTGG 60.670 57.143 0.00 0.00 0.00 4.00
1910 2007 1.134367 TGCATACGGCTGTAGTCACTC 59.866 52.381 11.78 0.00 45.15 3.51
1918 2015 3.769300 TCCATAGATATGCATACGGCTGT 59.231 43.478 8.99 2.42 45.15 4.40
1936 2033 4.104383 ACAGAACATCAAACCACTCCAT 57.896 40.909 0.00 0.00 0.00 3.41
1938 2035 3.632145 ACAACAGAACATCAAACCACTCC 59.368 43.478 0.00 0.00 0.00 3.85
2020 2118 1.115930 ACAGAGCAGGTCCGACTGTT 61.116 55.000 0.00 0.00 38.41 3.16
2026 2124 1.393603 TATCTCACAGAGCAGGTCCG 58.606 55.000 0.00 0.00 0.00 4.79
2027 2125 2.298729 GGATATCTCACAGAGCAGGTCC 59.701 54.545 2.05 0.00 0.00 4.46
2046 2144 8.032451 GCACTTTTAAAGGCTTATTACAATGGA 58.968 33.333 9.64 0.00 0.00 3.41
2047 2145 7.816995 TGCACTTTTAAAGGCTTATTACAATGG 59.183 33.333 9.64 0.00 0.00 3.16
2048 2146 8.755696 TGCACTTTTAAAGGCTTATTACAATG 57.244 30.769 9.64 0.00 0.00 2.82
2049 2147 9.771534 TTTGCACTTTTAAAGGCTTATTACAAT 57.228 25.926 9.64 0.00 0.00 2.71
2050 2148 9.036671 GTTTGCACTTTTAAAGGCTTATTACAA 57.963 29.630 9.64 0.00 0.00 2.41
2051 2149 8.417884 AGTTTGCACTTTTAAAGGCTTATTACA 58.582 29.630 9.64 0.00 0.00 2.41
2052 2150 8.699749 CAGTTTGCACTTTTAAAGGCTTATTAC 58.300 33.333 9.64 5.59 0.00 1.89
2053 2151 8.634444 TCAGTTTGCACTTTTAAAGGCTTATTA 58.366 29.630 9.64 0.00 0.00 0.98
2054 2152 7.438160 GTCAGTTTGCACTTTTAAAGGCTTATT 59.562 33.333 9.64 0.00 0.00 1.40
2061 2162 5.519927 CCCAAGTCAGTTTGCACTTTTAAAG 59.480 40.000 2.81 2.81 30.06 1.85
2209 2385 2.798847 CACACACACATCACTCACTCAG 59.201 50.000 0.00 0.00 0.00 3.35
2214 2390 6.318628 GTTTTAAACACACACACATCACTCA 58.681 36.000 2.62 0.00 0.00 3.41
2215 2391 5.451023 CGTTTTAAACACACACACATCACTC 59.549 40.000 8.61 0.00 0.00 3.51
2216 2392 5.328691 CGTTTTAAACACACACACATCACT 58.671 37.500 8.61 0.00 0.00 3.41
2217 2393 4.028026 GCGTTTTAAACACACACACATCAC 60.028 41.667 8.61 0.00 0.00 3.06
2218 2394 4.099120 GCGTTTTAAACACACACACATCA 58.901 39.130 8.61 0.00 0.00 3.07
2219 2395 4.099120 TGCGTTTTAAACACACACACATC 58.901 39.130 8.61 0.00 0.00 3.06
2220 2396 4.098055 TGCGTTTTAAACACACACACAT 57.902 36.364 8.61 0.00 0.00 3.21
2221 2397 3.493272 CTGCGTTTTAAACACACACACA 58.507 40.909 8.61 0.00 0.00 3.72
2222 2398 2.849473 CCTGCGTTTTAAACACACACAC 59.151 45.455 8.61 0.00 0.00 3.82
2276 2459 0.388649 AGGCGAGCTACAGACGTTTG 60.389 55.000 4.25 4.25 0.00 2.93
2286 2469 1.892862 GAGCGAGGTAGGCGAGCTA 60.893 63.158 0.00 0.00 38.39 3.32
2288 2471 2.741116 GATGAGCGAGGTAGGCGAGC 62.741 65.000 0.00 0.00 35.00 5.03
2291 2474 1.007964 CAGATGAGCGAGGTAGGCG 60.008 63.158 0.00 0.00 35.00 5.52
2301 2496 1.830477 AGACTTGAGGGACAGATGAGC 59.170 52.381 0.00 0.00 0.00 4.26
2309 2504 1.476488 GAGCAGAGAGACTTGAGGGAC 59.524 57.143 0.00 0.00 0.00 4.46
2313 2508 1.467883 CGCAGAGCAGAGAGACTTGAG 60.468 57.143 0.00 0.00 0.00 3.02
2314 2509 0.525311 CGCAGAGCAGAGAGACTTGA 59.475 55.000 0.00 0.00 0.00 3.02
2319 2514 0.525311 CAGTTCGCAGAGCAGAGAGA 59.475 55.000 0.00 0.00 41.37 3.10
2350 2545 2.968574 GAGAACTGGGGATGAGCATAGA 59.031 50.000 0.00 0.00 0.00 1.98
2351 2546 2.971330 AGAGAACTGGGGATGAGCATAG 59.029 50.000 0.00 0.00 0.00 2.23
2352 2547 2.968574 GAGAGAACTGGGGATGAGCATA 59.031 50.000 0.00 0.00 0.00 3.14
2353 2548 1.767681 GAGAGAACTGGGGATGAGCAT 59.232 52.381 0.00 0.00 0.00 3.79
2354 2549 1.198713 GAGAGAACTGGGGATGAGCA 58.801 55.000 0.00 0.00 0.00 4.26
2355 2550 1.138661 CAGAGAGAACTGGGGATGAGC 59.861 57.143 0.00 0.00 34.64 4.26
2356 2551 1.138661 GCAGAGAGAACTGGGGATGAG 59.861 57.143 0.00 0.00 38.22 2.90
2357 2552 1.198713 GCAGAGAGAACTGGGGATGA 58.801 55.000 0.00 0.00 38.22 2.92
2358 2553 1.138661 GAGCAGAGAGAACTGGGGATG 59.861 57.143 0.00 0.00 38.22 3.51
2359 2554 1.008206 AGAGCAGAGAGAACTGGGGAT 59.992 52.381 0.00 0.00 38.22 3.85
2360 2555 0.411452 AGAGCAGAGAGAACTGGGGA 59.589 55.000 0.00 0.00 38.22 4.81
2361 2556 2.151502 TAGAGCAGAGAGAACTGGGG 57.848 55.000 0.00 0.00 38.22 4.96
2362 2557 3.181467 CCATTAGAGCAGAGAGAACTGGG 60.181 52.174 0.00 0.00 38.22 4.45
2363 2558 3.740764 GCCATTAGAGCAGAGAGAACTGG 60.741 52.174 0.00 0.00 38.22 4.00
2364 2559 3.456280 GCCATTAGAGCAGAGAGAACTG 58.544 50.000 0.00 0.00 40.43 3.16
2365 2560 2.433970 GGCCATTAGAGCAGAGAGAACT 59.566 50.000 0.00 0.00 0.00 3.01
2366 2561 2.801342 CGGCCATTAGAGCAGAGAGAAC 60.801 54.545 2.24 0.00 0.00 3.01
2367 2562 1.410517 CGGCCATTAGAGCAGAGAGAA 59.589 52.381 2.24 0.00 0.00 2.87
2378 2573 1.795768 ACGATGCATACGGCCATTAG 58.204 50.000 18.34 0.00 43.89 1.73
2379 2574 2.139917 GAACGATGCATACGGCCATTA 58.860 47.619 18.34 0.00 43.89 1.90
2380 2575 0.944386 GAACGATGCATACGGCCATT 59.056 50.000 18.34 7.35 43.89 3.16
2381 2576 0.106708 AGAACGATGCATACGGCCAT 59.893 50.000 18.34 0.00 43.89 4.40
2382 2577 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
2383 2578 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
2384 2579 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
2393 2588 2.363680 CTGGCCTCTACATCAGAACGAT 59.636 50.000 3.32 0.00 31.12 3.73
2394 2589 1.751351 CTGGCCTCTACATCAGAACGA 59.249 52.381 3.32 0.00 31.12 3.85
2395 2590 1.202463 CCTGGCCTCTACATCAGAACG 60.202 57.143 3.32 0.00 31.12 3.95
2396 2591 1.139853 CCCTGGCCTCTACATCAGAAC 59.860 57.143 3.32 0.00 31.12 3.01
2397 2592 1.500474 CCCTGGCCTCTACATCAGAA 58.500 55.000 3.32 0.00 31.12 3.02
2398 2593 0.399091 CCCCTGGCCTCTACATCAGA 60.399 60.000 3.32 0.00 0.00 3.27
2399 2594 0.692419 ACCCCTGGCCTCTACATCAG 60.692 60.000 3.32 0.00 0.00 2.90
2400 2595 0.253160 AACCCCTGGCCTCTACATCA 60.253 55.000 3.32 0.00 0.00 3.07
2401 2596 0.919710 AAACCCCTGGCCTCTACATC 59.080 55.000 3.32 0.00 0.00 3.06
2402 2597 1.382914 AAAACCCCTGGCCTCTACAT 58.617 50.000 3.32 0.00 0.00 2.29
2403 2598 1.074889 GAAAAACCCCTGGCCTCTACA 59.925 52.381 3.32 0.00 0.00 2.74
2404 2599 1.354705 AGAAAAACCCCTGGCCTCTAC 59.645 52.381 3.32 0.00 0.00 2.59
2405 2600 1.755200 AGAAAAACCCCTGGCCTCTA 58.245 50.000 3.32 0.00 0.00 2.43
2406 2601 0.860457 AAGAAAAACCCCTGGCCTCT 59.140 50.000 3.32 0.00 0.00 3.69
2407 2602 1.203063 AGAAGAAAAACCCCTGGCCTC 60.203 52.381 3.32 0.00 0.00 4.70
2408 2603 0.860457 AGAAGAAAAACCCCTGGCCT 59.140 50.000 3.32 0.00 0.00 5.19
2409 2604 1.717032 AAGAAGAAAAACCCCTGGCC 58.283 50.000 0.00 0.00 0.00 5.36
2410 2605 3.133901 TGAAAAGAAGAAAAACCCCTGGC 59.866 43.478 0.00 0.00 0.00 4.85
2411 2606 5.351948 TTGAAAAGAAGAAAAACCCCTGG 57.648 39.130 0.00 0.00 0.00 4.45
2412 2607 7.680442 TTTTTGAAAAGAAGAAAAACCCCTG 57.320 32.000 0.00 0.00 0.00 4.45
2445 2640 5.948742 TTTTGACAGAACTGGGGATTTTT 57.051 34.783 6.76 0.00 34.19 1.94
2446 2641 5.012046 GGATTTTGACAGAACTGGGGATTTT 59.988 40.000 6.76 0.00 34.19 1.82
2447 2642 4.528206 GGATTTTGACAGAACTGGGGATTT 59.472 41.667 6.76 0.00 34.19 2.17
2448 2643 4.089361 GGATTTTGACAGAACTGGGGATT 58.911 43.478 6.76 0.00 34.19 3.01
2449 2644 3.701664 GGATTTTGACAGAACTGGGGAT 58.298 45.455 6.76 0.00 34.19 3.85
2450 2645 2.552155 CGGATTTTGACAGAACTGGGGA 60.552 50.000 6.76 0.00 34.19 4.81
2451 2646 1.812571 CGGATTTTGACAGAACTGGGG 59.187 52.381 6.76 0.00 34.19 4.96
2452 2647 1.200020 GCGGATTTTGACAGAACTGGG 59.800 52.381 6.76 0.00 34.19 4.45
2453 2648 1.879380 TGCGGATTTTGACAGAACTGG 59.121 47.619 6.76 0.00 34.19 4.00
2454 2649 3.624326 TTGCGGATTTTGACAGAACTG 57.376 42.857 0.00 0.00 0.00 3.16
2455 2650 4.321230 GGATTTGCGGATTTTGACAGAACT 60.321 41.667 0.00 0.00 0.00 3.01
2456 2651 3.920412 GGATTTGCGGATTTTGACAGAAC 59.080 43.478 0.00 0.00 0.00 3.01
2457 2652 3.826157 AGGATTTGCGGATTTTGACAGAA 59.174 39.130 0.00 0.00 0.00 3.02
2458 2653 3.420893 AGGATTTGCGGATTTTGACAGA 58.579 40.909 0.00 0.00 0.00 3.41
2459 2654 3.855689 AGGATTTGCGGATTTTGACAG 57.144 42.857 0.00 0.00 0.00 3.51
2460 2655 3.442273 GGTAGGATTTGCGGATTTTGACA 59.558 43.478 0.00 0.00 0.00 3.58
2461 2656 3.486875 CGGTAGGATTTGCGGATTTTGAC 60.487 47.826 0.00 0.00 0.00 3.18
2462 2657 2.680841 CGGTAGGATTTGCGGATTTTGA 59.319 45.455 0.00 0.00 0.00 2.69
2463 2658 2.680841 TCGGTAGGATTTGCGGATTTTG 59.319 45.455 0.00 0.00 0.00 2.44
2464 2659 2.943033 CTCGGTAGGATTTGCGGATTTT 59.057 45.455 0.00 0.00 0.00 1.82
2465 2660 2.169769 TCTCGGTAGGATTTGCGGATTT 59.830 45.455 0.00 0.00 0.00 2.17
2466 2661 1.760613 TCTCGGTAGGATTTGCGGATT 59.239 47.619 0.00 0.00 0.00 3.01
2467 2662 1.410004 TCTCGGTAGGATTTGCGGAT 58.590 50.000 0.00 0.00 0.00 4.18
2468 2663 1.134907 GTTCTCGGTAGGATTTGCGGA 60.135 52.381 0.00 0.00 0.00 5.54
2469 2664 1.287425 GTTCTCGGTAGGATTTGCGG 58.713 55.000 0.00 0.00 0.00 5.69
2470 2665 1.287425 GGTTCTCGGTAGGATTTGCG 58.713 55.000 0.00 0.00 0.00 4.85
2471 2666 1.209747 AGGGTTCTCGGTAGGATTTGC 59.790 52.381 0.00 0.00 0.00 3.68
2474 2669 3.393426 TGTAGGGTTCTCGGTAGGATT 57.607 47.619 0.00 0.00 0.00 3.01
2495 2714 2.354729 CCAATCGTGAGGCCCCAA 59.645 61.111 0.00 0.00 0.00 4.12
2497 2716 2.682582 GATCCCAATCGTGAGGCCCC 62.683 65.000 0.00 0.00 0.00 5.80
2500 2719 1.964223 TCTAGATCCCAATCGTGAGGC 59.036 52.381 0.00 0.00 36.97 4.70
2501 2720 2.029470 GCTCTAGATCCCAATCGTGAGG 60.029 54.545 0.00 0.00 36.99 3.86
2502 2721 2.029470 GGCTCTAGATCCCAATCGTGAG 60.029 54.545 0.75 0.00 38.24 3.51
2503 2722 1.964223 GGCTCTAGATCCCAATCGTGA 59.036 52.381 0.75 0.00 36.97 4.35
2504 2723 1.967066 AGGCTCTAGATCCCAATCGTG 59.033 52.381 9.05 0.00 36.97 4.35
2506 2725 2.757868 CCTAGGCTCTAGATCCCAATCG 59.242 54.545 9.05 0.00 36.97 3.34
2507 2726 3.785364 ACCTAGGCTCTAGATCCCAATC 58.215 50.000 9.30 0.00 0.00 2.67
2509 2728 3.309296 CAACCTAGGCTCTAGATCCCAA 58.691 50.000 9.30 0.00 0.00 4.12
2510 2729 2.964209 CAACCTAGGCTCTAGATCCCA 58.036 52.381 9.30 0.00 0.00 4.37
2511 2730 1.621317 GCAACCTAGGCTCTAGATCCC 59.379 57.143 9.30 5.32 0.00 3.85
2512 2731 2.320781 TGCAACCTAGGCTCTAGATCC 58.679 52.381 9.30 4.33 0.00 3.36
2513 2732 3.056179 GGATGCAACCTAGGCTCTAGATC 60.056 52.174 9.30 3.30 0.00 2.75
2514 2733 2.903135 GGATGCAACCTAGGCTCTAGAT 59.097 50.000 9.30 0.00 0.00 1.98
2515 2734 2.320781 GGATGCAACCTAGGCTCTAGA 58.679 52.381 9.30 0.00 0.00 2.43
2516 2735 1.000283 CGGATGCAACCTAGGCTCTAG 60.000 57.143 9.30 0.00 0.00 2.43
2517 2736 1.040646 CGGATGCAACCTAGGCTCTA 58.959 55.000 9.30 0.00 0.00 2.43
2518 2737 1.826024 CGGATGCAACCTAGGCTCT 59.174 57.895 9.30 0.00 0.00 4.09
2519 2738 1.889573 GCGGATGCAACCTAGGCTC 60.890 63.158 9.30 0.00 42.15 4.70
2520 2739 2.190578 GCGGATGCAACCTAGGCT 59.809 61.111 9.30 0.00 42.15 4.58
2521 2740 2.040009 TAGGCGGATGCAACCTAGGC 62.040 60.000 9.30 8.76 45.35 3.93
2522 2741 0.249911 GTAGGCGGATGCAACCTAGG 60.250 60.000 11.65 7.41 45.35 3.02
2523 2742 0.597637 CGTAGGCGGATGCAACCTAG 60.598 60.000 11.65 0.00 45.35 3.02
2524 2743 1.440060 CGTAGGCGGATGCAACCTA 59.560 57.895 11.65 7.65 45.35 3.08
2525 2744 2.186903 CGTAGGCGGATGCAACCT 59.813 61.111 11.65 8.63 45.35 3.50
2526 2745 3.573491 GCGTAGGCGGATGCAACC 61.573 66.667 2.19 2.19 45.35 3.77
2527 2746 2.817834 TGCGTAGGCGGATGCAAC 60.818 61.111 6.84 0.00 45.35 4.17
2528 2747 2.817834 GTGCGTAGGCGGATGCAA 60.818 61.111 10.35 0.00 42.81 4.08
2532 2751 2.495366 TTCAACGTGCGTAGGCGGAT 62.495 55.000 2.53 0.00 44.10 4.18
2533 2752 3.210223 TTCAACGTGCGTAGGCGGA 62.210 57.895 2.53 0.00 44.10 5.54
2534 2753 2.735478 TTCAACGTGCGTAGGCGG 60.735 61.111 2.53 0.00 44.10 6.13
2535 2754 2.468532 GTTCAACGTGCGTAGGCG 59.531 61.111 2.53 0.00 44.10 5.52
2536 2755 2.674084 GGGTTCAACGTGCGTAGGC 61.674 63.158 0.00 0.00 40.52 3.93
2537 2756 2.377310 CGGGTTCAACGTGCGTAGG 61.377 63.158 0.00 0.00 0.00 3.18
2538 2757 2.377310 CCGGGTTCAACGTGCGTAG 61.377 63.158 0.00 0.00 0.00 3.51
2539 2758 2.157305 ATCCGGGTTCAACGTGCGTA 62.157 55.000 0.00 0.00 0.00 4.42
2540 2759 3.524648 ATCCGGGTTCAACGTGCGT 62.525 57.895 0.00 0.00 0.00 5.24
2541 2760 2.736682 GATCCGGGTTCAACGTGCG 61.737 63.158 0.00 0.00 0.00 5.34
2542 2761 2.396157 GGATCCGGGTTCAACGTGC 61.396 63.158 0.00 0.00 0.00 5.34
2543 2762 2.098233 CGGATCCGGGTTCAACGTG 61.098 63.158 26.95 0.00 35.56 4.49
2544 2763 2.263540 CGGATCCGGGTTCAACGT 59.736 61.111 26.95 0.00 35.56 3.99
2545 2764 1.808390 GTCGGATCCGGGTTCAACG 60.808 63.158 32.79 5.07 40.25 4.10
2546 2765 1.449070 GGTCGGATCCGGGTTCAAC 60.449 63.158 32.79 21.64 40.25 3.18
2547 2766 2.983791 GGTCGGATCCGGGTTCAA 59.016 61.111 32.79 10.77 40.25 2.69
2548 2767 3.454573 CGGTCGGATCCGGGTTCA 61.455 66.667 32.79 11.58 45.88 3.18
2555 2774 2.610833 GTGGAATTTTACGGTCGGATCC 59.389 50.000 0.00 0.00 0.00 3.36
2636 2880 2.806237 CGGAGGCCTTAGACGGTC 59.194 66.667 6.77 0.00 0.00 4.79
2647 2891 4.849310 TTGGGTATGCGCGGAGGC 62.849 66.667 8.83 1.27 0.00 4.70
2671 2915 1.523711 CGTGCCCTATTGCGGTGAT 60.524 57.895 0.00 0.00 0.00 3.06
2682 2926 2.713967 GCATTCATTGCCGTGCCCT 61.714 57.895 0.00 0.00 46.15 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.