Multiple sequence alignment - TraesCS7A01G327000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G327000 chr7A 100.000 2237 0 0 1 2237 475200423 475202659 0.000000e+00 4132
1 TraesCS7A01G327000 chr5B 97.444 1330 31 3 1 1329 45945972 45944645 0.000000e+00 2265
2 TraesCS7A01G327000 chr1D 97.297 1332 30 3 1 1331 371593910 371592584 0.000000e+00 2255
3 TraesCS7A01G327000 chr2B 96.779 1335 39 4 1 1332 359136092 359134759 0.000000e+00 2224
4 TraesCS7A01G327000 chr2B 96.285 1319 46 3 1 1318 381825972 381824656 0.000000e+00 2161
5 TraesCS7A01G327000 chr7B 96.844 1331 39 3 1 1330 202354505 202355833 0.000000e+00 2222
6 TraesCS7A01G327000 chr7B 85.559 367 53 0 1326 1692 427875158 427875524 3.480000e-103 385
7 TraesCS7A01G327000 chr3B 96.241 1330 43 7 1 1328 366138654 366139978 0.000000e+00 2172
8 TraesCS7A01G327000 chr2D 95.356 1335 57 4 1 1331 381509695 381508362 0.000000e+00 2117
9 TraesCS7A01G327000 chr1B 95.038 1330 64 2 1 1329 301045439 301046767 0.000000e+00 2089
10 TraesCS7A01G327000 chrUn 95.102 1327 62 3 1 1326 22794739 22796063 0.000000e+00 2087
11 TraesCS7A01G327000 chr7D 88.165 921 62 14 1326 2236 413532421 413533304 0.000000e+00 1053
12 TraesCS7A01G327000 chr7D 97.674 86 2 0 1837 1922 413532940 413533025 4.980000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G327000 chr7A 475200423 475202659 2236 False 4132.0 4132 100.0000 1 2237 1 chr7A.!!$F1 2236
1 TraesCS7A01G327000 chr5B 45944645 45945972 1327 True 2265.0 2265 97.4440 1 1329 1 chr5B.!!$R1 1328
2 TraesCS7A01G327000 chr1D 371592584 371593910 1326 True 2255.0 2255 97.2970 1 1331 1 chr1D.!!$R1 1330
3 TraesCS7A01G327000 chr2B 359134759 359136092 1333 True 2224.0 2224 96.7790 1 1332 1 chr2B.!!$R1 1331
4 TraesCS7A01G327000 chr2B 381824656 381825972 1316 True 2161.0 2161 96.2850 1 1318 1 chr2B.!!$R2 1317
5 TraesCS7A01G327000 chr7B 202354505 202355833 1328 False 2222.0 2222 96.8440 1 1330 1 chr7B.!!$F1 1329
6 TraesCS7A01G327000 chr3B 366138654 366139978 1324 False 2172.0 2172 96.2410 1 1328 1 chr3B.!!$F1 1327
7 TraesCS7A01G327000 chr2D 381508362 381509695 1333 True 2117.0 2117 95.3560 1 1331 1 chr2D.!!$R1 1330
8 TraesCS7A01G327000 chr1B 301045439 301046767 1328 False 2089.0 2089 95.0380 1 1329 1 chr1B.!!$F1 1328
9 TraesCS7A01G327000 chrUn 22794739 22796063 1324 False 2087.0 2087 95.1020 1 1326 1 chrUn.!!$F1 1325
10 TraesCS7A01G327000 chr7D 413532421 413533304 883 False 600.5 1053 92.9195 1326 2236 2 chr7D.!!$F1 910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
728 730 0.667184 CGTGCACAATTTCTTGGCCC 60.667 55.0 18.64 0.0 36.64 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1715 0.323302 TATGCACCTCGTGGCTTTCA 59.677 50.0 2.76 0.0 36.63 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 0.988832 AACTTACGCCTTGGATGGGA 59.011 50.000 0.00 0.00 0.00 4.37
88 89 2.610374 GCTTGTCAAGTCGGTTGTAACA 59.390 45.455 14.03 0.00 37.43 2.41
161 162 1.258445 AAAGATCGACTCCCTGCGGT 61.258 55.000 0.00 0.00 0.00 5.68
354 355 1.919240 CCTTGGGTAAACTTGGGGAC 58.081 55.000 0.00 0.00 0.00 4.46
477 478 3.118738 GGTATGAGACCCAAAGACATCGT 60.119 47.826 0.00 0.00 43.25 3.73
683 685 2.356432 CCTGGAAGCTCACCAATGATGA 60.356 50.000 12.56 0.00 36.95 2.92
728 730 0.667184 CGTGCACAATTTCTTGGCCC 60.667 55.000 18.64 0.00 36.64 5.80
955 964 6.127619 GGTTAGAGTTTGGGGAATGATCAAAG 60.128 42.308 0.00 0.00 32.03 2.77
1388 1401 9.084533 GGATGAGTAGATCAAGAGTAATAACCT 57.915 37.037 0.00 0.00 42.53 3.50
1461 1474 1.744368 CTGATGTTGCGGCTGCTCT 60.744 57.895 20.27 0.00 43.34 4.09
1466 1479 3.952508 TTGCGGCTGCTCTGGGAA 61.953 61.111 20.27 0.00 43.34 3.97
1479 1492 0.250858 CTGGGAATGTCACTGGTGCA 60.251 55.000 0.00 0.00 0.00 4.57
1481 1494 1.632920 TGGGAATGTCACTGGTGCATA 59.367 47.619 0.00 0.00 30.93 3.14
1492 1505 3.242944 CACTGGTGCATACTAATTCGTCG 59.757 47.826 0.00 0.00 0.00 5.12
1505 1518 2.934107 TTCGTCGAAAATGGTTCACG 57.066 45.000 4.91 0.00 0.00 4.35
1511 1524 1.529010 CGAAAATGGTTCACGCGGATC 60.529 52.381 12.47 4.11 0.00 3.36
1564 1577 4.767255 GGCTGTGAGGGCTCCACG 62.767 72.222 1.49 0.00 37.34 4.94
1617 1630 3.057315 CACTGGCAATGGAGAAAAACGAT 60.057 43.478 0.00 0.00 0.00 3.73
1620 1633 2.262211 GCAATGGAGAAAAACGATGGC 58.738 47.619 0.00 0.00 0.00 4.40
1643 1656 3.252701 GGTGGCTTCTAGCATTGATGATG 59.747 47.826 0.67 0.00 44.75 3.07
1684 1697 2.359531 CGGGATCAGAAGAGACCACTAC 59.640 54.545 0.00 0.00 0.00 2.73
1685 1698 2.359531 GGGATCAGAAGAGACCACTACG 59.640 54.545 0.00 0.00 0.00 3.51
1686 1699 3.280295 GGATCAGAAGAGACCACTACGA 58.720 50.000 0.00 0.00 0.00 3.43
1687 1700 3.314080 GGATCAGAAGAGACCACTACGAG 59.686 52.174 0.00 0.00 0.00 4.18
1688 1701 2.712709 TCAGAAGAGACCACTACGAGG 58.287 52.381 0.00 0.00 0.00 4.63
1689 1702 2.040012 TCAGAAGAGACCACTACGAGGT 59.960 50.000 0.00 0.00 43.46 3.85
1690 1703 2.162608 CAGAAGAGACCACTACGAGGTG 59.837 54.545 0.00 0.00 40.09 4.00
1691 1704 0.889306 AAGAGACCACTACGAGGTGC 59.111 55.000 0.00 0.00 40.09 5.01
1692 1705 0.038455 AGAGACCACTACGAGGTGCT 59.962 55.000 0.00 0.00 40.09 4.40
1693 1706 0.889306 GAGACCACTACGAGGTGCTT 59.111 55.000 0.00 0.00 40.09 3.91
1694 1707 1.272769 GAGACCACTACGAGGTGCTTT 59.727 52.381 0.00 0.00 40.09 3.51
1695 1708 1.692519 AGACCACTACGAGGTGCTTTT 59.307 47.619 0.00 0.00 40.09 2.27
1696 1709 2.104281 AGACCACTACGAGGTGCTTTTT 59.896 45.455 0.00 0.00 40.09 1.94
1784 1798 3.625897 CCTCCTGCGGTGGTGACA 61.626 66.667 7.32 0.00 32.24 3.58
1789 1803 2.203139 TGCGGTGGTGACAAGTGG 60.203 61.111 0.00 0.00 46.06 4.00
1806 1820 1.755395 GGCTGGAGCATCAATGGCA 60.755 57.895 0.20 0.00 44.36 4.92
1888 1933 1.003839 GCGGGAGATGTGTGTTGGA 60.004 57.895 0.00 0.00 0.00 3.53
1914 1959 5.605488 AGTAGAATAATACATCGGTTGGGGT 59.395 40.000 0.00 0.00 0.00 4.95
1915 1960 4.714632 AGAATAATACATCGGTTGGGGTG 58.285 43.478 0.00 0.00 0.00 4.61
1916 1961 4.410883 AGAATAATACATCGGTTGGGGTGA 59.589 41.667 0.00 0.00 0.00 4.02
1917 1962 2.710096 AATACATCGGTTGGGGTGAG 57.290 50.000 0.00 0.00 0.00 3.51
1918 1963 0.837272 ATACATCGGTTGGGGTGAGG 59.163 55.000 0.00 0.00 0.00 3.86
1919 1964 0.545787 TACATCGGTTGGGGTGAGGT 60.546 55.000 0.00 0.00 0.00 3.85
1920 1965 1.377202 CATCGGTTGGGGTGAGGTG 60.377 63.158 0.00 0.00 0.00 4.00
1921 1966 3.268103 ATCGGTTGGGGTGAGGTGC 62.268 63.158 0.00 0.00 0.00 5.01
1929 1974 3.702048 GGTGAGGTGCGGCCAGTA 61.702 66.667 2.24 0.00 40.61 2.74
1930 1975 2.125512 GTGAGGTGCGGCCAGTAG 60.126 66.667 2.24 0.00 40.61 2.57
1931 1976 2.283604 TGAGGTGCGGCCAGTAGA 60.284 61.111 2.24 0.00 40.61 2.59
1932 1977 1.911269 TGAGGTGCGGCCAGTAGAA 60.911 57.895 2.24 0.00 40.61 2.10
1933 1978 1.264749 TGAGGTGCGGCCAGTAGAAT 61.265 55.000 2.24 0.00 40.61 2.40
1934 1979 0.750850 GAGGTGCGGCCAGTAGAATA 59.249 55.000 2.24 0.00 40.61 1.75
1935 1980 1.344763 GAGGTGCGGCCAGTAGAATAT 59.655 52.381 2.24 0.00 40.61 1.28
1936 1981 2.561419 GAGGTGCGGCCAGTAGAATATA 59.439 50.000 2.24 0.00 40.61 0.86
1937 1982 2.969950 AGGTGCGGCCAGTAGAATATAA 59.030 45.455 2.24 0.00 40.61 0.98
1938 1983 3.583086 AGGTGCGGCCAGTAGAATATAAT 59.417 43.478 2.24 0.00 40.61 1.28
1939 1984 4.775780 AGGTGCGGCCAGTAGAATATAATA 59.224 41.667 2.24 0.00 40.61 0.98
1940 1985 4.868734 GGTGCGGCCAGTAGAATATAATAC 59.131 45.833 2.24 0.00 37.17 1.89
1941 1986 5.475719 GTGCGGCCAGTAGAATATAATACA 58.524 41.667 2.24 0.00 0.00 2.29
1942 1987 6.106673 GTGCGGCCAGTAGAATATAATACAT 58.893 40.000 2.24 0.00 0.00 2.29
1943 1988 6.255887 GTGCGGCCAGTAGAATATAATACATC 59.744 42.308 2.24 0.00 0.00 3.06
1944 1989 5.459107 GCGGCCAGTAGAATATAATACATCG 59.541 44.000 2.24 0.00 0.00 3.84
1945 1990 5.977725 CGGCCAGTAGAATATAATACATCGG 59.022 44.000 2.24 0.00 0.00 4.18
1946 1991 6.405508 CGGCCAGTAGAATATAATACATCGGT 60.406 42.308 2.24 0.00 0.00 4.69
1947 1992 7.328737 GGCCAGTAGAATATAATACATCGGTT 58.671 38.462 0.00 0.00 0.00 4.44
1948 1993 7.277981 GGCCAGTAGAATATAATACATCGGTTG 59.722 40.741 0.00 0.00 0.00 3.77
1949 1994 7.277981 GCCAGTAGAATATAATACATCGGTTGG 59.722 40.741 1.39 0.00 0.00 3.77
1950 1995 7.764443 CCAGTAGAATATAATACATCGGTTGGG 59.236 40.741 1.39 0.00 0.00 4.12
1951 1996 7.764443 CAGTAGAATATAATACATCGGTTGGGG 59.236 40.741 1.39 0.00 0.00 4.96
2065 2110 9.533253 ACTTTTGACAATGGTTTCATCTAAAAG 57.467 29.630 0.00 0.00 36.37 2.27
2207 2256 9.599866 AAACTTTATTATGGGCTTTAGAAATGC 57.400 29.630 0.00 0.00 0.00 3.56
2209 2258 8.981659 ACTTTATTATGGGCTTTAGAAATGCTT 58.018 29.630 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.959226 AGGCGATGCGACGTGTTTT 60.959 52.632 0.00 0.00 41.28 2.43
161 162 0.471191 CCAGCCCAGAGATATGCACA 59.529 55.000 0.00 0.00 0.00 4.57
299 300 2.391130 AAGCTCCCCACAACCACCA 61.391 57.895 0.00 0.00 0.00 4.17
354 355 5.939883 TCTTTATCTTTGTCATCACACAGGG 59.060 40.000 0.00 0.00 32.01 4.45
357 358 7.984422 ATGTCTTTATCTTTGTCATCACACA 57.016 32.000 0.00 0.00 29.76 3.72
387 388 1.108727 CAGAACCTTGGTGGCAGCAA 61.109 55.000 28.16 28.16 40.22 3.91
477 478 5.342433 CAGAGATCGCAAAAATATTTGGCA 58.658 37.500 19.30 10.59 44.93 4.92
582 584 3.005050 TGACGAACTCGACTATGTGGTTT 59.995 43.478 6.05 0.00 43.02 3.27
683 685 1.151777 CGTCGCCGCTGAATATTGGT 61.152 55.000 0.00 0.00 0.00 3.67
728 730 5.895636 AAGAGGCATATCTGAGTCGATAG 57.104 43.478 9.48 0.00 30.06 2.08
955 964 1.378531 TCATGTAAACCGAGCCATGC 58.621 50.000 0.00 0.00 35.72 4.06
1349 1359 9.904198 TGATCTACTCATCCAAATACAATTTCA 57.096 29.630 0.00 0.00 0.00 2.69
1353 1363 9.775854 CTCTTGATCTACTCATCCAAATACAAT 57.224 33.333 0.00 0.00 32.72 2.71
1354 1364 8.762645 ACTCTTGATCTACTCATCCAAATACAA 58.237 33.333 0.00 0.00 32.72 2.41
1355 1365 8.311395 ACTCTTGATCTACTCATCCAAATACA 57.689 34.615 0.00 0.00 32.72 2.29
1385 1398 6.780522 ACCATTTGTCCAAATAGTGTTTAGGT 59.219 34.615 5.02 3.79 38.84 3.08
1397 1410 7.547370 CAGACTTTTTAACACCATTTGTCCAAA 59.453 33.333 0.00 0.00 37.51 3.28
1414 1427 0.663153 GCTGCCACGACAGACTTTTT 59.337 50.000 8.64 0.00 40.25 1.94
1461 1474 0.405198 ATGCACCAGTGACATTCCCA 59.595 50.000 0.99 0.00 0.00 4.37
1466 1479 4.811024 CGAATTAGTATGCACCAGTGACAT 59.189 41.667 0.99 7.34 33.93 3.06
1479 1492 7.463648 CGTGAACCATTTTCGACGAATTAGTAT 60.464 37.037 11.71 0.00 0.00 2.12
1481 1494 5.389098 CGTGAACCATTTTCGACGAATTAGT 60.389 40.000 11.71 4.35 0.00 2.24
1492 1505 1.529010 CGATCCGCGTGAACCATTTTC 60.529 52.381 4.92 0.00 34.64 2.29
1521 1534 0.670546 CGTCACTTGATCCAACGGCT 60.671 55.000 0.00 0.00 0.00 5.52
1564 1577 1.002087 CGCCCCATAACCCTAGATGAC 59.998 57.143 0.00 0.00 0.00 3.06
1598 1611 2.230992 CCATCGTTTTTCTCCATTGCCA 59.769 45.455 0.00 0.00 0.00 4.92
1617 1630 2.196997 AATGCTAGAAGCCACCGCCA 62.197 55.000 0.00 0.00 41.51 5.69
1620 1633 1.600957 CATCAATGCTAGAAGCCACCG 59.399 52.381 0.00 0.00 41.51 4.94
1643 1656 2.741211 GAGTTCCGGTCCGTTGCC 60.741 66.667 11.06 0.00 0.00 4.52
1698 1711 1.202359 GCACCTCGTGGCTTTCAAAAA 60.202 47.619 2.76 0.00 36.63 1.94
1699 1712 0.383949 GCACCTCGTGGCTTTCAAAA 59.616 50.000 2.76 0.00 36.63 2.44
1700 1713 0.749818 TGCACCTCGTGGCTTTCAAA 60.750 50.000 2.76 0.00 36.63 2.69
1701 1714 0.537143 ATGCACCTCGTGGCTTTCAA 60.537 50.000 2.76 0.00 36.63 2.69
1702 1715 0.323302 TATGCACCTCGTGGCTTTCA 59.677 50.000 2.76 0.00 36.63 2.69
1703 1716 1.668419 ATATGCACCTCGTGGCTTTC 58.332 50.000 2.76 0.00 36.63 2.62
1704 1717 2.128771 AATATGCACCTCGTGGCTTT 57.871 45.000 2.76 0.00 36.63 3.51
1705 1718 1.745087 CAAATATGCACCTCGTGGCTT 59.255 47.619 2.76 0.00 36.63 4.35
1706 1719 1.065491 TCAAATATGCACCTCGTGGCT 60.065 47.619 2.76 0.00 36.63 4.75
1707 1720 1.378531 TCAAATATGCACCTCGTGGC 58.621 50.000 2.76 0.00 36.63 5.01
1708 1721 3.956233 CATTCAAATATGCACCTCGTGG 58.044 45.455 0.99 0.99 39.83 4.94
1777 1790 1.451504 CTCCAGCCACTTGTCACCA 59.548 57.895 0.00 0.00 0.00 4.17
1784 1798 1.471119 CATTGATGCTCCAGCCACTT 58.529 50.000 0.00 0.00 41.18 3.16
1789 1803 1.436336 GTGCCATTGATGCTCCAGC 59.564 57.895 0.00 0.00 42.50 4.85
1831 1845 1.092921 AACACCTCAAACGAGCGCAA 61.093 50.000 11.47 0.00 0.00 4.85
1835 1849 2.210116 TCAAGAACACCTCAAACGAGC 58.790 47.619 0.00 0.00 0.00 5.03
1888 1933 6.463897 CCCCAACCGATGTATTATTCTACTGT 60.464 42.308 0.00 0.00 0.00 3.55
1914 1959 1.264749 ATTCTACTGGCCGCACCTCA 61.265 55.000 0.00 0.00 40.22 3.86
1915 1960 0.750850 TATTCTACTGGCCGCACCTC 59.249 55.000 0.00 0.00 40.22 3.85
1916 1961 1.424638 ATATTCTACTGGCCGCACCT 58.575 50.000 0.00 0.00 40.22 4.00
1917 1962 3.396260 TTATATTCTACTGGCCGCACC 57.604 47.619 0.00 0.00 39.84 5.01
1918 1963 5.475719 TGTATTATATTCTACTGGCCGCAC 58.524 41.667 0.00 0.00 0.00 5.34
1919 1964 5.731957 TGTATTATATTCTACTGGCCGCA 57.268 39.130 0.00 0.00 0.00 5.69
1920 1965 5.459107 CGATGTATTATATTCTACTGGCCGC 59.541 44.000 0.00 0.00 0.00 6.53
1921 1966 5.977725 CCGATGTATTATATTCTACTGGCCG 59.022 44.000 0.00 0.00 0.00 6.13
1922 1967 6.875076 ACCGATGTATTATATTCTACTGGCC 58.125 40.000 0.00 0.00 0.00 5.36
1923 1968 7.277981 CCAACCGATGTATTATATTCTACTGGC 59.722 40.741 0.00 0.00 0.00 4.85
1924 1969 7.764443 CCCAACCGATGTATTATATTCTACTGG 59.236 40.741 0.00 0.00 0.00 4.00
1925 1970 7.764443 CCCCAACCGATGTATTATATTCTACTG 59.236 40.741 0.00 0.00 0.00 2.74
1926 1971 7.456902 ACCCCAACCGATGTATTATATTCTACT 59.543 37.037 0.00 0.00 0.00 2.57
1927 1972 7.548075 CACCCCAACCGATGTATTATATTCTAC 59.452 40.741 0.00 0.00 0.00 2.59
1928 1973 7.455323 TCACCCCAACCGATGTATTATATTCTA 59.545 37.037 0.00 0.00 0.00 2.10
1929 1974 6.271391 TCACCCCAACCGATGTATTATATTCT 59.729 38.462 0.00 0.00 0.00 2.40
1930 1975 6.469410 TCACCCCAACCGATGTATTATATTC 58.531 40.000 0.00 0.00 0.00 1.75
1931 1976 6.442541 TCACCCCAACCGATGTATTATATT 57.557 37.500 0.00 0.00 0.00 1.28
1932 1977 5.045869 CCTCACCCCAACCGATGTATTATAT 60.046 44.000 0.00 0.00 0.00 0.86
1933 1978 4.285003 CCTCACCCCAACCGATGTATTATA 59.715 45.833 0.00 0.00 0.00 0.98
1934 1979 3.072476 CCTCACCCCAACCGATGTATTAT 59.928 47.826 0.00 0.00 0.00 1.28
1935 1980 2.436542 CCTCACCCCAACCGATGTATTA 59.563 50.000 0.00 0.00 0.00 0.98
1936 1981 1.211949 CCTCACCCCAACCGATGTATT 59.788 52.381 0.00 0.00 0.00 1.89
1937 1982 0.837272 CCTCACCCCAACCGATGTAT 59.163 55.000 0.00 0.00 0.00 2.29
1938 1983 0.545787 ACCTCACCCCAACCGATGTA 60.546 55.000 0.00 0.00 0.00 2.29
1939 1984 1.846124 ACCTCACCCCAACCGATGT 60.846 57.895 0.00 0.00 0.00 3.06
1940 1985 1.377202 CACCTCACCCCAACCGATG 60.377 63.158 0.00 0.00 0.00 3.84
1941 1986 3.077907 CACCTCACCCCAACCGAT 58.922 61.111 0.00 0.00 0.00 4.18
1942 1987 3.948719 GCACCTCACCCCAACCGA 61.949 66.667 0.00 0.00 0.00 4.69
1944 1989 3.444818 TTGGCACCTCACCCCAACC 62.445 63.158 0.00 0.00 33.92 3.77
1945 1990 1.903404 CTTGGCACCTCACCCCAAC 60.903 63.158 0.00 0.00 35.02 3.77
1946 1991 2.067932 CTCTTGGCACCTCACCCCAA 62.068 60.000 0.00 0.00 37.13 4.12
1947 1992 2.449518 TCTTGGCACCTCACCCCA 60.450 61.111 0.00 0.00 0.00 4.96
1948 1993 2.352805 CTCTTGGCACCTCACCCC 59.647 66.667 0.00 0.00 0.00 4.95
1949 1994 2.360475 GCTCTTGGCACCTCACCC 60.360 66.667 0.00 0.00 41.35 4.61
1950 1995 2.743928 CGCTCTTGGCACCTCACC 60.744 66.667 0.00 0.00 41.91 4.02
1951 1996 3.426568 GCGCTCTTGGCACCTCAC 61.427 66.667 0.00 0.00 41.91 3.51
2032 2077 9.883142 ATGAAACCATTGTCAAAAGTAGAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
2191 2240 3.986435 AGGAAGCATTTCTAAAGCCCAT 58.014 40.909 0.00 0.00 33.68 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.