Multiple sequence alignment - TraesCS7A01G326600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G326600 chr7A 100.000 8421 0 0 1 8421 474530358 474521938 0.000000e+00 15551.0
1 TraesCS7A01G326600 chr7A 96.119 670 24 2 7699 8366 535518967 535518298 0.000000e+00 1092.0
2 TraesCS7A01G326600 chr7A 94.643 112 5 1 7006 7116 736421721 736421832 1.120000e-38 172.0
3 TraesCS7A01G326600 chr7A 94.545 55 3 0 8367 8421 224178845 224178899 1.510000e-12 86.1
4 TraesCS7A01G326600 chr7A 92.982 57 4 0 6532 6588 357985768 357985824 5.420000e-12 84.2
5 TraesCS7A01G326600 chr7A 80.180 111 16 5 674 780 151324590 151324482 2.520000e-10 78.7
6 TraesCS7A01G326600 chr7D 91.987 1872 97 15 4122 5966 413106585 413104740 0.000000e+00 2577.0
7 TraesCS7A01G326600 chr7D 86.429 1820 142 54 287 2053 413112156 413110389 0.000000e+00 1895.0
8 TraesCS7A01G326600 chr7D 95.631 1030 36 4 5984 7013 413104757 413103737 0.000000e+00 1644.0
9 TraesCS7A01G326600 chr7D 90.711 872 48 13 2456 3325 413108216 413107376 0.000000e+00 1131.0
10 TraesCS7A01G326600 chr7D 95.113 573 24 2 7129 7698 413103734 413103163 0.000000e+00 900.0
11 TraesCS7A01G326600 chr7D 93.225 369 14 9 3725 4084 413106937 413106571 4.470000e-147 532.0
12 TraesCS7A01G326600 chr7D 87.961 407 34 5 2051 2454 413108656 413108262 4.600000e-127 466.0
13 TraesCS7A01G326600 chr7D 88.710 62 2 3 441 498 69022285 69022225 4.220000e-08 71.3
14 TraesCS7A01G326600 chr7B 89.232 1978 150 30 503 2454 427397462 427395522 0.000000e+00 2414.0
15 TraesCS7A01G326600 chr7B 95.812 979 41 0 6029 7007 427377339 427376361 0.000000e+00 1581.0
16 TraesCS7A01G326600 chr7B 93.204 1030 49 11 3116 4136 427386433 427385416 0.000000e+00 1495.0
17 TraesCS7A01G326600 chr7B 92.661 763 44 8 4511 5261 427384861 427384099 0.000000e+00 1088.0
18 TraesCS7A01G326600 chr7B 93.590 702 21 9 5245 5944 427384061 427383382 0.000000e+00 1026.0
19 TraesCS7A01G326600 chr7B 94.014 568 29 3 7134 7698 427376346 427375781 0.000000e+00 856.0
20 TraesCS7A01G326600 chr7B 95.238 462 19 2 2456 2916 427395476 427395017 0.000000e+00 728.0
21 TraesCS7A01G326600 chr7B 82.900 462 46 10 4138 4568 427385317 427384858 1.330000e-102 385.0
22 TraesCS7A01G326600 chr7B 94.495 109 6 0 7006 7114 560803148 560803040 1.450000e-37 169.0
23 TraesCS7A01G326600 chr7B 89.655 58 6 0 5984 6041 427378456 427378399 3.260000e-09 75.0
24 TraesCS7A01G326600 chr6A 96.961 724 21 1 7699 8421 132611626 132610903 0.000000e+00 1214.0
25 TraesCS7A01G326600 chr6A 95.748 682 18 4 7698 8370 89294268 89293589 0.000000e+00 1088.0
26 TraesCS7A01G326600 chr6A 85.507 69 8 2 722 790 190750905 190750971 4.220000e-08 71.3
27 TraesCS7A01G326600 chr2A 97.601 667 14 2 7699 8364 681243226 681242561 0.000000e+00 1142.0
28 TraesCS7A01G326600 chr2A 81.768 181 28 5 6409 6588 750081729 750081553 6.810000e-31 147.0
29 TraesCS7A01G326600 chr3A 96.866 670 20 1 7698 8366 32970571 32969902 0.000000e+00 1120.0
30 TraesCS7A01G326600 chr3A 94.495 109 6 0 7004 7112 121332160 121332052 1.450000e-37 169.0
31 TraesCS7A01G326600 chr3A 100.000 54 0 0 8368 8421 32969927 32969874 5.380000e-17 100.0
32 TraesCS7A01G326600 chr3A 94.737 57 3 0 8365 8421 63732282 63732338 1.160000e-13 89.8
33 TraesCS7A01G326600 chr3A 94.737 57 3 0 8365 8421 66274137 66274193 1.160000e-13 89.8
34 TraesCS7A01G326600 chr3A 96.296 54 2 0 8368 8421 286833827 286833880 1.160000e-13 89.8
35 TraesCS7A01G326600 chr3A 85.000 80 4 7 722 796 730694393 730694469 3.260000e-09 75.0
36 TraesCS7A01G326600 chr3A 75.949 158 21 11 723 865 458184444 458184599 1.960000e-06 65.8
37 TraesCS7A01G326600 chr3A 82.667 75 9 3 722 795 12327775 12327846 7.060000e-06 63.9
38 TraesCS7A01G326600 chr3B 95.380 671 29 2 7698 8366 829198317 829198987 0.000000e+00 1066.0
39 TraesCS7A01G326600 chr3B 95.380 671 27 3 7698 8366 816786921 816786253 0.000000e+00 1064.0
40 TraesCS7A01G326600 chr3B 96.795 312 8 2 7996 8306 663079199 663078889 3.480000e-143 520.0
41 TraesCS7A01G326600 chr3B 91.667 120 9 1 7005 7124 70582105 70582223 1.880000e-36 165.0
42 TraesCS7A01G326600 chr3B 82.222 180 29 3 6409 6588 529875091 529875267 1.460000e-32 152.0
43 TraesCS7A01G326600 chr3B 81.667 180 30 3 6409 6588 516783546 516783370 6.810000e-31 147.0
44 TraesCS7A01G326600 chr5B 94.970 676 24 4 7693 8366 483956038 483955371 0.000000e+00 1051.0
45 TraesCS7A01G326600 chr5B 90.984 122 10 1 6995 7115 367910388 367910509 6.760000e-36 163.0
46 TraesCS7A01G326600 chr5B 85.915 71 8 1 722 790 701557968 701557898 3.260000e-09 75.0
47 TraesCS7A01G326600 chr5B 86.792 53 3 4 463 511 681918584 681918532 1.000000e-03 56.5
48 TraesCS7A01G326600 chr6B 95.666 646 26 2 7696 8340 142779464 142780108 0.000000e+00 1037.0
49 TraesCS7A01G326600 chr6B 86.620 142 14 5 6990 7129 40794169 40794307 1.460000e-32 152.0
50 TraesCS7A01G326600 chr4A 94.595 111 6 0 7006 7116 99034898 99034788 1.120000e-38 172.0
51 TraesCS7A01G326600 chr4A 92.308 117 8 1 7003 7118 736461129 736461245 1.880000e-36 165.0
52 TraesCS7A01G326600 chr1D 83.799 179 26 2 6410 6588 468103991 468104166 5.230000e-37 167.0
53 TraesCS7A01G326600 chrUn 91.597 119 10 0 7006 7124 301836922 301837040 1.880000e-36 165.0
54 TraesCS7A01G326600 chr5A 83.425 181 25 5 6409 6588 690602482 690602306 6.760000e-36 163.0
55 TraesCS7A01G326600 chr1B 94.444 54 3 0 8368 8421 5691540 5691487 5.420000e-12 84.2
56 TraesCS7A01G326600 chr2D 92.453 53 4 0 722 774 455353237 455353185 9.060000e-10 76.8
57 TraesCS7A01G326600 chr4D 97.674 43 1 0 6409 6451 150590615 150590657 3.260000e-09 75.0
58 TraesCS7A01G326600 chr4B 87.273 55 3 3 444 495 424697154 424697101 9.130000e-05 60.2
59 TraesCS7A01G326600 chr3D 85.246 61 5 3 441 497 442761407 442761347 9.130000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G326600 chr7A 474521938 474530358 8420 True 15551.000000 15551 100.000000 1 8421 1 chr7A.!!$R2 8420
1 TraesCS7A01G326600 chr7A 535518298 535518967 669 True 1092.000000 1092 96.119000 7699 8366 1 chr7A.!!$R3 667
2 TraesCS7A01G326600 chr7D 413103163 413112156 8993 True 1306.428571 2577 91.579571 287 7698 7 chr7D.!!$R2 7411
3 TraesCS7A01G326600 chr7B 427395017 427397462 2445 True 1571.000000 2414 92.235000 503 2916 2 chr7B.!!$R4 2413
4 TraesCS7A01G326600 chr7B 427383382 427386433 3051 True 998.500000 1495 90.588750 3116 5944 4 chr7B.!!$R3 2828
5 TraesCS7A01G326600 chr7B 427375781 427378456 2675 True 837.333333 1581 93.160333 5984 7698 3 chr7B.!!$R2 1714
6 TraesCS7A01G326600 chr6A 132610903 132611626 723 True 1214.000000 1214 96.961000 7699 8421 1 chr6A.!!$R2 722
7 TraesCS7A01G326600 chr6A 89293589 89294268 679 True 1088.000000 1088 95.748000 7698 8370 1 chr6A.!!$R1 672
8 TraesCS7A01G326600 chr2A 681242561 681243226 665 True 1142.000000 1142 97.601000 7699 8364 1 chr2A.!!$R1 665
9 TraesCS7A01G326600 chr3A 32969874 32970571 697 True 610.000000 1120 98.433000 7698 8421 2 chr3A.!!$R2 723
10 TraesCS7A01G326600 chr3B 829198317 829198987 670 False 1066.000000 1066 95.380000 7698 8366 1 chr3B.!!$F3 668
11 TraesCS7A01G326600 chr3B 816786253 816786921 668 True 1064.000000 1064 95.380000 7698 8366 1 chr3B.!!$R3 668
12 TraesCS7A01G326600 chr5B 483955371 483956038 667 True 1051.000000 1051 94.970000 7693 8366 1 chr5B.!!$R1 673
13 TraesCS7A01G326600 chr6B 142779464 142780108 644 False 1037.000000 1037 95.666000 7696 8340 1 chr6B.!!$F2 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 991 3.499737 GCGCCTCATCCACAACCG 61.500 66.667 0.00 0.00 0.00 4.44 F
1114 1154 0.250513 CTCTTTCCTCTTCCCACCCG 59.749 60.000 0.00 0.00 0.00 5.28 F
1679 1719 0.617413 AGGAACTCATGTGCCAGAGG 59.383 55.000 0.00 0.00 44.65 3.69 F
2979 4821 0.980423 GGAGCACAGAAGGGAGAGTT 59.020 55.000 0.00 0.00 0.00 3.01 F
4244 6498 0.035439 TTTTTGCTAGCGGGAGAGGG 60.035 55.000 10.77 0.00 0.00 4.30 F
4915 7261 1.073284 ACACGTGAAATGCCTTAGGGT 59.927 47.619 25.01 0.00 34.45 4.34 F
5619 8031 1.419387 CAGATGGGTCCCCTCAAGATC 59.581 57.143 15.00 5.84 36.94 2.75 F
7030 10516 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2723 4565 0.035630 GAGTTCCATGCTGAGGCTGT 60.036 55.000 0.00 0.00 39.59 4.40 R
2803 4645 0.381801 AGTCCGTGTTTTGCAAGCTG 59.618 50.000 0.00 0.00 0.00 4.24 R
3332 5174 0.676466 TGGCAATGGTAAGAGGTGCG 60.676 55.000 0.00 0.00 36.04 5.34 R
4447 6724 0.034186 TCGGCATCCTGGAAAGCAAT 60.034 50.000 21.21 0.00 0.00 3.56 R
5324 7735 0.247185 ATGCTGCCACAAAATTCCGG 59.753 50.000 0.00 0.00 0.00 5.14 R
6147 9631 2.560504 TGCCATCAGTAATGCTAACGG 58.439 47.619 0.00 0.00 33.71 4.44 R
7094 10580 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30 R
8028 11521 2.352651 CTCACAAACCATACCGCATGAG 59.647 50.000 0.00 0.00 36.69 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.722056 TTCTTTTTCTCTCTTCAAATTTCTTCG 57.278 29.630 0.00 0.00 0.00 3.79
72 73 8.893727 TCTTTTTCTCTCTTCAAATTTCTTCGT 58.106 29.630 0.00 0.00 0.00 3.85
73 74 9.508567 CTTTTTCTCTCTTCAAATTTCTTCGTT 57.491 29.630 0.00 0.00 0.00 3.85
74 75 9.855021 TTTTTCTCTCTTCAAATTTCTTCGTTT 57.145 25.926 0.00 0.00 0.00 3.60
75 76 9.855021 TTTTCTCTCTTCAAATTTCTTCGTTTT 57.145 25.926 0.00 0.00 0.00 2.43
76 77 9.855021 TTTCTCTCTTCAAATTTCTTCGTTTTT 57.145 25.926 0.00 0.00 0.00 1.94
101 102 9.823647 TTTTTACCTTTTTGTATGCATCAAGAA 57.176 25.926 0.19 8.32 0.00 2.52
102 103 9.995003 TTTTACCTTTTTGTATGCATCAAGAAT 57.005 25.926 0.19 0.00 0.00 2.40
428 432 8.919695 TTTTTCAAACACATTGTACGTTTTTG 57.080 26.923 0.00 5.25 40.11 2.44
557 561 9.999009 TTTTACAGTCTTCATATAGTACGTCAG 57.001 33.333 0.00 0.00 0.00 3.51
558 562 8.953368 TTACAGTCTTCATATAGTACGTCAGA 57.047 34.615 0.00 0.00 0.00 3.27
608 612 9.487790 TTTTCCAAATGGATGATTTAAGTGTTC 57.512 29.630 2.38 0.00 44.98 3.18
610 614 8.421249 TCCAAATGGATGATTTAAGTGTTCTT 57.579 30.769 0.00 0.00 39.78 2.52
654 658 8.368668 GCCTATTTCTTCCATACACATAGTACT 58.631 37.037 0.00 0.00 35.05 2.73
693 718 7.249147 TCAAAAACAGTTTTTCAAATGCATGG 58.751 30.769 19.28 6.46 40.65 3.66
698 723 7.856145 ACAGTTTTTCAAATGCATGGTTAAA 57.144 28.000 0.00 0.00 30.75 1.52
705 730 9.443283 TTTTCAAATGCATGGTTAAAATTTTCG 57.557 25.926 6.72 0.00 0.00 3.46
709 734 9.443283 CAAATGCATGGTTAAAATTTTCGAAAA 57.557 25.926 24.43 24.43 0.00 2.29
711 736 9.662545 AATGCATGGTTAAAATTTTCGAAAAAG 57.337 25.926 25.77 8.05 0.00 2.27
951 991 3.499737 GCGCCTCATCCACAACCG 61.500 66.667 0.00 0.00 0.00 4.44
1113 1153 1.657804 TCTCTTTCCTCTTCCCACCC 58.342 55.000 0.00 0.00 0.00 4.61
1114 1154 0.250513 CTCTTTCCTCTTCCCACCCG 59.749 60.000 0.00 0.00 0.00 5.28
1219 1259 2.750637 TCGACGCAGACCTCCTCC 60.751 66.667 0.00 0.00 0.00 4.30
1328 1368 2.504244 CCTTGACGCGTCCGACTC 60.504 66.667 34.34 11.70 38.29 3.36
1447 1487 2.098770 GCCTTGCTCCTCTGCTATTTTG 59.901 50.000 0.00 0.00 0.00 2.44
1456 1496 5.759059 TCCTCTGCTATTTTGTCCATTCAT 58.241 37.500 0.00 0.00 0.00 2.57
1473 1513 2.420642 TCATGAGTTGCTTGAGTGCTC 58.579 47.619 0.00 0.00 0.00 4.26
1478 1518 0.871057 GTTGCTTGAGTGCTCCTGAC 59.129 55.000 0.00 0.00 0.00 3.51
1516 1556 3.918253 TTTGCAGTAGGGCGCTGGG 62.918 63.158 14.51 3.71 36.28 4.45
1554 1594 2.431942 CGGACCTACGCGTTGCTT 60.432 61.111 20.78 4.68 0.00 3.91
1679 1719 0.617413 AGGAACTCATGTGCCAGAGG 59.383 55.000 0.00 0.00 44.65 3.69
1740 1781 2.989909 TCTGGTGTGCCAAGTATCATG 58.010 47.619 0.00 0.00 45.51 3.07
1741 1782 1.402968 CTGGTGTGCCAAGTATCATGC 59.597 52.381 0.00 0.00 45.51 4.06
1760 1801 3.972133 TGCTGATTTCTGACCCATGAAT 58.028 40.909 0.00 0.00 0.00 2.57
1776 1817 9.626045 GACCCATGAATTTGTAGTTTTAGAAAG 57.374 33.333 0.00 0.00 0.00 2.62
1777 1818 9.143155 ACCCATGAATTTGTAGTTTTAGAAAGT 57.857 29.630 0.00 0.00 0.00 2.66
1785 1826 9.659830 ATTTGTAGTTTTAGAAAGTAAACGCTG 57.340 29.630 0.00 0.00 38.83 5.18
1946 2004 9.760660 GGATATGAATAAGTGCGATACAAAATC 57.239 33.333 0.00 0.00 0.00 2.17
1957 2015 5.163663 TGCGATACAAAATCATTCCCAGAAC 60.164 40.000 0.00 0.00 0.00 3.01
1963 2021 6.458210 ACAAAATCATTCCCAGAACAATCAC 58.542 36.000 0.00 0.00 0.00 3.06
1981 2039 1.901159 CACCTTGCCATCCCATTTTCA 59.099 47.619 0.00 0.00 0.00 2.69
2065 3859 9.539825 ACAGATAGCAATAAATGTACTTCAGAG 57.460 33.333 0.00 0.00 0.00 3.35
2067 3861 8.928448 AGATAGCAATAAATGTACTTCAGAGGA 58.072 33.333 0.00 0.00 0.00 3.71
2142 3936 3.713826 TTTTTCCCGCCTTAGACTGAT 57.286 42.857 0.00 0.00 0.00 2.90
2143 3937 4.829872 TTTTTCCCGCCTTAGACTGATA 57.170 40.909 0.00 0.00 0.00 2.15
2144 3938 4.829872 TTTTCCCGCCTTAGACTGATAA 57.170 40.909 0.00 0.00 0.00 1.75
2145 3939 5.367945 TTTTCCCGCCTTAGACTGATAAT 57.632 39.130 0.00 0.00 0.00 1.28
2153 3947 5.403766 CGCCTTAGACTGATAATAACAGCAG 59.596 44.000 0.00 0.00 38.74 4.24
2162 3956 6.881065 ACTGATAATAACAGCAGCAAAGAAGA 59.119 34.615 0.00 0.00 38.74 2.87
2171 3965 4.624452 CAGCAGCAAAGAAGAAATTAAGCC 59.376 41.667 0.00 0.00 0.00 4.35
2237 4033 2.230750 GGTCAAGTACTCTTAGGTGCGT 59.769 50.000 0.00 0.00 32.07 5.24
2282 4078 1.880027 CACCTTAGTCCACAGTTTGGC 59.120 52.381 0.00 0.00 46.47 4.52
2290 4086 1.247419 CCACAGTTTGGCGGGCATAA 61.247 55.000 4.64 0.07 39.07 1.90
2294 4090 1.000283 CAGTTTGGCGGGCATAACAAA 60.000 47.619 21.79 6.87 0.00 2.83
2317 4113 5.225899 TGAAATCAGCTCATGAACATTCG 57.774 39.130 0.00 0.00 42.53 3.34
2320 4116 5.481200 AATCAGCTCATGAACATTCGAAG 57.519 39.130 3.35 0.00 42.53 3.79
2389 4185 2.107950 TGGGAGCCAACGTATCAAAG 57.892 50.000 0.00 0.00 0.00 2.77
2415 4211 3.725740 GCATGTTGCGTGACTTAATATGC 59.274 43.478 11.96 11.96 40.13 3.14
2418 4214 4.760878 TGTTGCGTGACTTAATATGCCTA 58.239 39.130 0.00 0.00 0.00 3.93
2503 4344 8.870160 TTAATATTACAAGATTGCACATTGCC 57.130 30.769 0.00 0.00 44.23 4.52
2613 4454 9.944376 GCCTTAGTGAATGGAATATATCTTGTA 57.056 33.333 0.00 0.00 0.00 2.41
2723 4565 2.644418 GTGGCAATTGCTGTCGCA 59.356 55.556 28.42 15.44 46.24 5.10
2764 4606 3.862267 CAGGTTCGATGCTTCAGAAGTAG 59.138 47.826 11.94 0.00 0.00 2.57
2774 4616 5.611374 TGCTTCAGAAGTAGTTGCTTTACT 58.389 37.500 11.94 0.00 32.90 2.24
2789 4631 6.360370 TGCTTTACTTCTCCTTCACATACT 57.640 37.500 0.00 0.00 0.00 2.12
2803 4645 8.851145 TCCTTCACATACTGAATACTACTCATC 58.149 37.037 0.00 0.00 38.26 2.92
2819 4661 1.001487 TCATCAGCTTGCAAAACACGG 60.001 47.619 0.00 0.00 0.00 4.94
2903 4745 4.871822 AGAATAAGAGGGAAACAATGGGG 58.128 43.478 0.00 0.00 0.00 4.96
2904 4746 4.544152 AGAATAAGAGGGAAACAATGGGGA 59.456 41.667 0.00 0.00 0.00 4.81
2905 4747 2.604912 AAGAGGGAAACAATGGGGAC 57.395 50.000 0.00 0.00 0.00 4.46
2932 4774 7.169982 GGTAGCTGTTAGATATTGTTAGCACAG 59.830 40.741 0.00 0.00 33.22 3.66
2943 4785 4.359434 TGTTAGCACAGGAACCAACATA 57.641 40.909 0.00 0.00 0.00 2.29
2963 4805 1.025812 CTGTCGCCAGTAGGTAGGAG 58.974 60.000 0.00 0.00 37.19 3.69
2979 4821 0.980423 GGAGCACAGAAGGGAGAGTT 59.020 55.000 0.00 0.00 0.00 3.01
2998 4840 9.785982 GGAGAGTTCTAGGAATATAAATGCTTT 57.214 33.333 0.00 0.00 0.00 3.51
3034 4876 5.417580 GCAAATTGTAATTCTGGTAGGTGGA 59.582 40.000 0.00 0.00 0.00 4.02
3062 4904 9.667107 CTTATTTTGTAATTCTGTCCCTCACTA 57.333 33.333 0.00 0.00 0.00 2.74
3160 5002 7.318141 CACTTCAGCAGGACATTTTGATAATT 58.682 34.615 0.00 0.00 0.00 1.40
3276 5118 2.299297 ACTCTCCTGTCTACCAAAACCG 59.701 50.000 0.00 0.00 0.00 4.44
3414 5565 0.040204 CTGCCCCCAAACTTCTCCAT 59.960 55.000 0.00 0.00 0.00 3.41
3415 5566 0.251742 TGCCCCCAAACTTCTCCATG 60.252 55.000 0.00 0.00 0.00 3.66
3420 5571 1.315257 CCAAACTTCTCCATGGCCCG 61.315 60.000 6.96 0.00 0.00 6.13
3429 5580 0.331278 TCCATGGCCCGTCTTTCAAT 59.669 50.000 6.96 0.00 0.00 2.57
3443 5594 5.310451 GTCTTTCAATACACCACCACCTAA 58.690 41.667 0.00 0.00 0.00 2.69
3447 5598 3.904965 TCAATACACCACCACCTAACTCA 59.095 43.478 0.00 0.00 0.00 3.41
3450 5601 1.056660 CACCACCACCTAACTCACCT 58.943 55.000 0.00 0.00 0.00 4.00
3458 5609 3.559384 CCACCTAACTCACCTTCTTTCCC 60.559 52.174 0.00 0.00 0.00 3.97
3489 5640 6.572519 TCCATTTTCAAGGTTGCTATAATGC 58.427 36.000 0.00 0.00 0.00 3.56
3501 5652 0.682292 TATAATGCCGTCATCGCCCA 59.318 50.000 0.00 0.00 35.54 5.36
3602 5753 8.783093 CCTTTCTTTCTATATGTTTGTGTGACA 58.217 33.333 0.00 0.00 0.00 3.58
3634 5785 2.927014 GCGACAGGCTATTTATCCCTCG 60.927 54.545 0.00 0.00 39.11 4.63
3667 5818 4.404073 ACAAGGATCTAGTTGTCAGGCTAG 59.596 45.833 0.00 7.02 30.99 3.42
3689 5840 4.848660 AGACTGCCACCATGGATAGATTAT 59.151 41.667 21.47 0.00 40.96 1.28
3690 5841 6.025539 AGACTGCCACCATGGATAGATTATA 58.974 40.000 21.47 0.00 40.96 0.98
3704 5855 7.678171 TGGATAGATTATACCATGCTTGTAGGA 59.322 37.037 0.00 0.00 0.00 2.94
3736 5887 3.777106 AGGTCTGATTCTTGCTGTCAA 57.223 42.857 0.00 0.00 0.00 3.18
3742 5893 6.094603 GGTCTGATTCTTGCTGTCAACAATAT 59.905 38.462 0.00 0.00 0.00 1.28
3748 5899 5.702865 TCTTGCTGTCAACAATATTGCTTC 58.297 37.500 15.48 4.76 0.00 3.86
3761 5912 9.905713 AACAATATTGCTTCTATTTGTAGGAGA 57.094 29.630 15.48 0.00 0.00 3.71
3785 5936 7.663081 AGACCATTTGGCAGATATGTTACATAG 59.337 37.037 10.92 0.00 39.32 2.23
3791 5942 9.938280 TTTGGCAGATATGTTACATAGGTATAC 57.062 33.333 10.92 0.00 0.00 1.47
3813 5966 5.973413 CACATGCAAGTGTGTTAAATACG 57.027 39.130 13.82 0.00 43.43 3.06
3814 5967 4.320690 CACATGCAAGTGTGTTAAATACGC 59.679 41.667 13.82 0.00 43.43 4.42
3815 5968 4.023622 ACATGCAAGTGTGTTAAATACGCA 60.024 37.500 0.00 0.00 44.65 5.24
3948 6104 6.465948 AGTTGGATGCTTTGAATTGCAAATA 58.534 32.000 1.71 0.00 44.90 1.40
4097 6254 6.597672 ACATGTTTTATTCATCAAGCCGTCTA 59.402 34.615 0.00 0.00 0.00 2.59
4118 6275 7.471539 CGTCTATTGGATATTTCTGTACCACCT 60.472 40.741 0.00 0.00 0.00 4.00
4132 6289 6.653320 TCTGTACCACCTTCATAATGTTGTTC 59.347 38.462 0.00 0.00 0.00 3.18
4136 6293 6.690530 ACCACCTTCATAATGTTGTTCATTG 58.309 36.000 3.73 0.00 45.14 2.82
4212 6466 8.380743 TCAAAAGCAACTAATACGAACCTTTA 57.619 30.769 0.00 0.00 0.00 1.85
4224 6478 3.634910 ACGAACCTTTACCAGCAACATTT 59.365 39.130 0.00 0.00 0.00 2.32
4243 6497 3.551259 TTTTTGCTAGCGGGAGAGG 57.449 52.632 10.77 0.00 0.00 3.69
4244 6498 0.035439 TTTTTGCTAGCGGGAGAGGG 60.035 55.000 10.77 0.00 0.00 4.30
4245 6499 1.910580 TTTTGCTAGCGGGAGAGGGG 61.911 60.000 10.77 0.00 0.00 4.79
4321 6598 5.009010 ACGAGTCATTGAAAATGTTGAGCTT 59.991 36.000 0.00 0.00 0.00 3.74
4329 6606 9.844790 CATTGAAAATGTTGAGCTTAATCAGTA 57.155 29.630 0.00 0.00 0.00 2.74
4418 6695 5.590530 TGTTGCTCTTGTAATTGGTTTGT 57.409 34.783 0.00 0.00 0.00 2.83
4436 6713 2.175202 TGTGGGGTGGTTCAATATTGC 58.825 47.619 10.76 0.00 0.00 3.56
4442 6719 3.096092 GGTGGTTCAATATTGCTCCCAA 58.904 45.455 16.99 3.16 35.01 4.12
4447 6724 7.327214 GTGGTTCAATATTGCTCCCAAAAATA 58.673 34.615 16.99 2.29 34.05 1.40
4483 6772 4.283678 TGCCGAAACGTCTTAAATGTTTG 58.716 39.130 10.64 5.86 45.11 2.93
4517 6861 8.323854 CACATTGTTCTTCGATGTAACTCTATG 58.676 37.037 0.00 8.92 46.13 2.23
4531 6875 4.494091 ACTCTATGACAGGGGTGATTTG 57.506 45.455 0.00 0.00 0.00 2.32
4591 6935 9.868277 CTCCTTTGCATTATGTAAATTGGTTAA 57.132 29.630 8.76 0.00 31.84 2.01
4667 7011 7.817962 TCAGTTTTCCAGCAGTTACTATACTTC 59.182 37.037 0.00 0.00 0.00 3.01
4810 7154 4.674623 CGTTCACTCTATCGTGGTAGCTTT 60.675 45.833 0.00 0.00 35.63 3.51
4816 7160 5.007385 TCTATCGTGGTAGCTTTCCTTTC 57.993 43.478 0.00 0.00 0.00 2.62
4826 7171 3.999046 AGCTTTCCTTTCCAAAATGCAG 58.001 40.909 0.00 0.00 0.00 4.41
4915 7261 1.073284 ACACGTGAAATGCCTTAGGGT 59.927 47.619 25.01 0.00 34.45 4.34
4920 7266 2.164422 GTGAAATGCCTTAGGGTCTTGC 59.836 50.000 0.00 0.00 34.45 4.01
4959 7311 8.938883 AGTATATGGTGAACTGAATGGAAGTAT 58.061 33.333 0.00 0.00 0.00 2.12
5002 7355 4.796038 AGATTGAGGCAAGAATGTTTGG 57.204 40.909 0.00 0.00 0.00 3.28
5013 7366 6.753744 GGCAAGAATGTTTGGATAGAATGTTC 59.246 38.462 0.00 0.00 0.00 3.18
5032 7385 9.214953 GAATGTTCGAAATGTAAAGATGATGAC 57.785 33.333 0.00 0.00 0.00 3.06
5065 7418 9.206870 CAAAATTATCAAAATGTTGCTACCACT 57.793 29.630 0.00 0.00 34.50 4.00
5077 7432 5.825679 TGTTGCTACCACTAATGACAAACTT 59.174 36.000 0.00 0.00 0.00 2.66
5099 7454 8.459911 ACTTGTACCAGTATTTGTTTTAAGCT 57.540 30.769 0.00 0.00 0.00 3.74
5109 7465 8.637986 AGTATTTGTTTTAAGCTCCACATCAAA 58.362 29.630 0.00 0.00 0.00 2.69
5214 7570 7.187824 AGAGAATTGGCAACTATCAACTCTA 57.812 36.000 0.00 0.00 36.20 2.43
5215 7571 7.271511 AGAGAATTGGCAACTATCAACTCTAG 58.728 38.462 0.00 0.00 36.20 2.43
5280 7691 5.419542 TCTTAAGTGCTGCTAATTCGACAT 58.580 37.500 1.63 0.00 0.00 3.06
5287 7698 4.694982 TGCTGCTAATTCGACATTCAAGAA 59.305 37.500 0.00 0.00 0.00 2.52
5288 7699 5.355071 TGCTGCTAATTCGACATTCAAGAAT 59.645 36.000 0.00 0.00 36.29 2.40
5289 7700 6.127925 TGCTGCTAATTCGACATTCAAGAATT 60.128 34.615 0.00 7.62 44.04 2.17
5306 7717 7.370383 TCAAGAATTTAACTGCCATTTCTCAC 58.630 34.615 0.00 0.00 0.00 3.51
5313 7724 5.886960 AACTGCCATTTCTCACTGAATAC 57.113 39.130 0.00 0.00 34.24 1.89
5324 7735 3.521560 TCACTGAATACTGATTGGCGTC 58.478 45.455 0.00 0.00 0.00 5.19
5357 7769 3.145551 GCATGCTGGGGCTTCAGG 61.146 66.667 11.37 0.00 39.59 3.86
5404 7816 8.886719 TCATCTTCTTTTACAATCTATGCACAG 58.113 33.333 0.00 0.00 0.00 3.66
5484 7896 2.226437 GTCATTTGTGTTGCAGATCCGT 59.774 45.455 0.00 0.00 0.00 4.69
5619 8031 1.419387 CAGATGGGTCCCCTCAAGATC 59.581 57.143 15.00 5.84 36.94 2.75
5753 8165 9.892130 ATTGTTTCTTAGTCCTTATCTAGTTGG 57.108 33.333 0.00 0.00 0.00 3.77
5811 8223 4.380841 TTCTGCATTCATTGATCCAAGC 57.619 40.909 0.00 0.00 0.00 4.01
5950 8362 8.934023 ACATCTAGGGTGTTTCTTTCATTAAA 57.066 30.769 0.00 0.00 0.00 1.52
5951 8363 9.014297 ACATCTAGGGTGTTTCTTTCATTAAAG 57.986 33.333 0.00 0.00 42.99 1.85
5965 8377 9.849166 TCTTTCATTAAAGAAACGAAACAAAGT 57.151 25.926 1.84 0.00 46.32 2.66
5968 8380 8.623310 TCATTAAAGAAACGAAACAAAGTTCC 57.377 30.769 0.00 0.00 0.00 3.62
5969 8381 7.703197 TCATTAAAGAAACGAAACAAAGTTCCC 59.297 33.333 0.00 0.00 0.00 3.97
5970 8382 5.654603 AAAGAAACGAAACAAAGTTCCCT 57.345 34.783 0.00 0.00 0.00 4.20
5971 8383 5.654603 AAGAAACGAAACAAAGTTCCCTT 57.345 34.783 0.00 0.00 0.00 3.95
5972 8384 6.762702 AAGAAACGAAACAAAGTTCCCTTA 57.237 33.333 0.00 0.00 0.00 2.69
5973 8385 6.762702 AGAAACGAAACAAAGTTCCCTTAA 57.237 33.333 0.00 0.00 0.00 1.85
5974 8386 7.160547 AGAAACGAAACAAAGTTCCCTTAAA 57.839 32.000 0.00 0.00 0.00 1.52
5975 8387 7.604549 AGAAACGAAACAAAGTTCCCTTAAAA 58.395 30.769 0.00 0.00 0.00 1.52
5976 8388 8.089597 AGAAACGAAACAAAGTTCCCTTAAAAA 58.910 29.630 0.00 0.00 0.00 1.94
6003 8415 9.620259 AGAGAGAAAGAAATGAAACAAAGTAGT 57.380 29.630 0.00 0.00 0.00 2.73
6147 9631 4.705023 ACTTGTTGGCAATACTACCCATTC 59.295 41.667 1.92 0.00 33.65 2.67
6158 9642 6.675413 ATACTACCCATTCCGTTAGCATTA 57.325 37.500 0.00 0.00 0.00 1.90
6212 9696 9.567776 TTCTCAACCATACTATCAACTTCAAAA 57.432 29.630 0.00 0.00 0.00 2.44
6260 9746 5.435686 TTGGAGGTAAATGCAGTGACTAT 57.564 39.130 0.91 0.00 0.00 2.12
6261 9747 6.553953 TTGGAGGTAAATGCAGTGACTATA 57.446 37.500 0.91 0.00 0.00 1.31
6266 9752 7.418025 GGAGGTAAATGCAGTGACTATAGTCTT 60.418 40.741 28.53 17.09 44.99 3.01
6270 9756 7.602517 AAATGCAGTGACTATAGTCTTGAAC 57.397 36.000 28.53 19.71 44.99 3.18
6277 9763 9.781834 CAGTGACTATAGTCTTGAACTAGAAAG 57.218 37.037 28.53 11.05 43.64 2.62
6292 9778 8.205512 TGAACTAGAAAGTGTGGTGTGTATTAA 58.794 33.333 0.00 0.00 35.62 1.40
6297 9783 8.773404 AGAAAGTGTGGTGTGTATTAACTATC 57.227 34.615 0.00 0.00 0.00 2.08
6419 9905 5.723672 AGTCGTCTTAAGGATCTGAAACA 57.276 39.130 1.85 0.00 0.00 2.83
6477 9963 7.548097 TCTGTAACCAGTAAATCTTCTGCTAG 58.452 38.462 0.00 0.00 39.82 3.42
6702 10188 6.785488 TGTTCTACTGCAGTGTTTTATGAG 57.215 37.500 29.57 15.54 0.00 2.90
6786 10272 4.607955 GAAAAAGCTTGGAAACTACGCTT 58.392 39.130 0.00 0.00 42.19 4.68
6948 10434 7.771927 AATTGAAGTTGAAATGGACTCTGAT 57.228 32.000 0.00 0.00 0.00 2.90
6995 10481 5.452776 CCGGTGCAGTAAGTTCCTATCAATA 60.453 44.000 0.00 0.00 0.00 1.90
7014 10500 8.596781 ATCAATACATACAGTATACTCCCTCC 57.403 38.462 1.26 0.00 42.56 4.30
7015 10501 6.657966 TCAATACATACAGTATACTCCCTCCG 59.342 42.308 1.26 0.00 42.56 4.63
7016 10502 4.450305 ACATACAGTATACTCCCTCCGT 57.550 45.455 1.26 0.00 0.00 4.69
7017 10503 4.801164 ACATACAGTATACTCCCTCCGTT 58.199 43.478 1.26 0.00 0.00 4.44
7018 10504 4.826183 ACATACAGTATACTCCCTCCGTTC 59.174 45.833 1.26 0.00 0.00 3.95
7019 10505 2.295885 ACAGTATACTCCCTCCGTTCG 58.704 52.381 1.26 0.00 0.00 3.95
7020 10506 1.607628 CAGTATACTCCCTCCGTTCGG 59.392 57.143 1.26 4.74 0.00 4.30
7021 10507 1.492176 AGTATACTCCCTCCGTTCGGA 59.508 52.381 13.34 13.34 0.00 4.55
7022 10508 2.092212 AGTATACTCCCTCCGTTCGGAA 60.092 50.000 14.79 0.00 33.41 4.30
7023 10509 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
7024 10510 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
7025 10511 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7026 10512 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7027 10513 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7028 10514 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
7029 10515 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
7030 10516 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
7031 10517 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
7032 10518 2.086869 TCCGTTCGGAATTACTCGTCT 58.913 47.619 11.66 0.00 0.00 4.18
7033 10519 2.096496 TCCGTTCGGAATTACTCGTCTC 59.904 50.000 11.66 0.00 0.00 3.36
7034 10520 2.099621 CGTTCGGAATTACTCGTCTCG 58.900 52.381 0.00 0.00 0.00 4.04
7035 10521 2.448219 GTTCGGAATTACTCGTCTCGG 58.552 52.381 0.00 0.00 0.00 4.63
7036 10522 2.028420 TCGGAATTACTCGTCTCGGA 57.972 50.000 0.00 0.00 0.00 4.55
7037 10523 2.569059 TCGGAATTACTCGTCTCGGAT 58.431 47.619 0.00 0.00 0.00 4.18
7038 10524 3.732212 TCGGAATTACTCGTCTCGGATA 58.268 45.455 0.00 0.00 0.00 2.59
7039 10525 4.321718 TCGGAATTACTCGTCTCGGATAT 58.678 43.478 0.00 0.00 0.00 1.63
7040 10526 4.153655 TCGGAATTACTCGTCTCGGATATG 59.846 45.833 0.00 0.00 0.00 1.78
7041 10527 4.153655 CGGAATTACTCGTCTCGGATATGA 59.846 45.833 0.00 0.00 0.00 2.15
7042 10528 5.334646 CGGAATTACTCGTCTCGGATATGAA 60.335 44.000 0.00 0.00 0.00 2.57
7043 10529 6.622549 GGAATTACTCGTCTCGGATATGAAT 58.377 40.000 0.00 0.00 0.00 2.57
7044 10530 6.528423 GGAATTACTCGTCTCGGATATGAATG 59.472 42.308 0.00 0.00 0.00 2.67
7045 10531 6.576662 ATTACTCGTCTCGGATATGAATGT 57.423 37.500 0.00 0.00 0.00 2.71
7046 10532 7.683437 ATTACTCGTCTCGGATATGAATGTA 57.317 36.000 0.00 0.00 0.00 2.29
7047 10533 7.683437 TTACTCGTCTCGGATATGAATGTAT 57.317 36.000 0.00 0.00 0.00 2.29
7048 10534 6.184580 ACTCGTCTCGGATATGAATGTATC 57.815 41.667 0.00 0.00 0.00 2.24
7049 10535 5.941058 ACTCGTCTCGGATATGAATGTATCT 59.059 40.000 0.00 0.00 32.78 1.98
7050 10536 7.104290 ACTCGTCTCGGATATGAATGTATCTA 58.896 38.462 0.00 0.00 32.78 1.98
7051 10537 7.279090 ACTCGTCTCGGATATGAATGTATCTAG 59.721 40.741 0.00 0.00 32.78 2.43
7052 10538 7.328737 TCGTCTCGGATATGAATGTATCTAGA 58.671 38.462 0.00 0.00 32.78 2.43
7053 10539 7.822822 TCGTCTCGGATATGAATGTATCTAGAA 59.177 37.037 0.00 0.00 31.35 2.10
7054 10540 8.616942 CGTCTCGGATATGAATGTATCTAGAAT 58.383 37.037 0.00 0.00 31.35 2.40
7082 10568 9.832445 AAAATACGTCTAGATACATCCATTTGT 57.168 29.630 0.00 0.00 0.00 2.83
7084 10570 9.909644 AATACGTCTAGATACATCCATTTGTAC 57.090 33.333 0.00 0.00 35.04 2.90
7085 10571 6.436261 ACGTCTAGATACATCCATTTGTACG 58.564 40.000 0.00 0.00 35.04 3.67
7086 10572 5.856986 CGTCTAGATACATCCATTTGTACGG 59.143 44.000 0.00 0.00 35.04 4.02
7087 10573 5.634020 GTCTAGATACATCCATTTGTACGGC 59.366 44.000 0.00 0.00 35.04 5.68
7088 10574 4.415881 AGATACATCCATTTGTACGGCA 57.584 40.909 0.00 0.00 35.04 5.69
7089 10575 4.776349 AGATACATCCATTTGTACGGCAA 58.224 39.130 0.00 0.00 35.04 4.52
7090 10576 4.816385 AGATACATCCATTTGTACGGCAAG 59.184 41.667 0.00 0.00 38.47 4.01
7091 10577 2.790433 ACATCCATTTGTACGGCAAGT 58.210 42.857 0.00 0.00 38.47 3.16
7092 10578 3.945346 ACATCCATTTGTACGGCAAGTA 58.055 40.909 0.00 0.00 38.47 2.24
7093 10579 4.328536 ACATCCATTTGTACGGCAAGTAA 58.671 39.130 0.00 0.00 38.47 2.24
7094 10580 4.947388 ACATCCATTTGTACGGCAAGTAAT 59.053 37.500 0.00 0.00 38.47 1.89
7095 10581 5.417580 ACATCCATTTGTACGGCAAGTAATT 59.582 36.000 0.00 0.00 38.47 1.40
7096 10582 5.554822 TCCATTTGTACGGCAAGTAATTC 57.445 39.130 0.00 0.00 38.47 2.17
7097 10583 4.396790 TCCATTTGTACGGCAAGTAATTCC 59.603 41.667 0.00 0.00 38.47 3.01
7099 10585 3.316071 TTGTACGGCAAGTAATTCCGA 57.684 42.857 16.75 2.92 45.53 4.55
7100 10586 3.316071 TGTACGGCAAGTAATTCCGAA 57.684 42.857 16.75 3.90 45.53 4.30
7101 10587 2.995258 TGTACGGCAAGTAATTCCGAAC 59.005 45.455 16.75 0.00 45.53 3.95
7102 10588 1.073177 ACGGCAAGTAATTCCGAACG 58.927 50.000 16.75 0.00 45.53 3.95
7103 10589 0.372334 CGGCAAGTAATTCCGAACGG 59.628 55.000 6.94 6.94 45.53 4.44
7104 10590 1.729284 GGCAAGTAATTCCGAACGGA 58.271 50.000 12.04 12.04 43.52 4.69
7105 10591 1.664151 GGCAAGTAATTCCGAACGGAG 59.336 52.381 15.34 4.35 46.06 4.63
7106 10592 1.664151 GCAAGTAATTCCGAACGGAGG 59.336 52.381 15.34 3.40 46.06 4.30
7107 10593 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
7108 10594 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
7109 10595 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
7110 10596 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
7111 10597 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
7112 10598 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
7113 10599 0.038744 TTCCGAACGGAGGGAGTACT 59.961 55.000 15.34 0.00 46.06 2.73
7114 10600 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.000 12.04 0.00 39.76 2.24
7115 10601 0.455005 CCGAACGGAGGGAGTACTTC 59.545 60.000 7.53 0.00 37.50 3.01
7116 10602 0.455005 CGAACGGAGGGAGTACTTCC 59.545 60.000 12.91 12.91 46.00 3.46
7117 10603 1.849977 GAACGGAGGGAGTACTTCCT 58.150 55.000 23.71 23.71 45.98 3.36
7118 10604 2.681976 CGAACGGAGGGAGTACTTCCTA 60.682 54.545 23.53 0.00 45.98 2.94
7119 10605 3.359950 GAACGGAGGGAGTACTTCCTAA 58.640 50.000 23.53 0.00 45.98 2.69
7120 10606 3.684408 ACGGAGGGAGTACTTCCTAAT 57.316 47.619 23.53 8.55 45.98 1.73
7121 10607 3.564264 ACGGAGGGAGTACTTCCTAATC 58.436 50.000 23.53 13.99 45.98 1.75
7122 10608 3.053095 ACGGAGGGAGTACTTCCTAATCA 60.053 47.826 23.53 0.00 45.98 2.57
7123 10609 4.153411 CGGAGGGAGTACTTCCTAATCAT 58.847 47.826 23.53 0.00 45.98 2.45
7124 10610 4.589374 CGGAGGGAGTACTTCCTAATCATT 59.411 45.833 23.53 0.00 45.98 2.57
7125 10611 5.509840 CGGAGGGAGTACTTCCTAATCATTG 60.510 48.000 23.53 4.29 45.98 2.82
7126 10612 5.367060 GGAGGGAGTACTTCCTAATCATTGT 59.633 44.000 23.53 0.00 45.98 2.71
7127 10613 6.126739 GGAGGGAGTACTTCCTAATCATTGTT 60.127 42.308 23.53 0.00 45.98 2.83
7163 10649 9.036671 GTTTTTGTTTTTCTGATTAATTCCGGA 57.963 29.630 0.00 0.00 0.00 5.14
7286 10772 5.452777 GCCCAAAATTTCTATCGAGCATAC 58.547 41.667 0.00 0.00 0.00 2.39
7392 10878 4.734266 AGGCTTCTTGGTTCAGATTCTTT 58.266 39.130 0.00 0.00 0.00 2.52
7424 10910 2.363359 TCTGCTGAGCGTGTATGATGAT 59.637 45.455 0.00 0.00 0.00 2.45
7434 10920 7.877612 TGAGCGTGTATGATGATATTTTGGTAT 59.122 33.333 0.00 0.00 0.00 2.73
7435 10921 8.032952 AGCGTGTATGATGATATTTTGGTATG 57.967 34.615 0.00 0.00 0.00 2.39
7436 10922 7.119699 AGCGTGTATGATGATATTTTGGTATGG 59.880 37.037 0.00 0.00 0.00 2.74
7437 10923 7.119116 GCGTGTATGATGATATTTTGGTATGGA 59.881 37.037 0.00 0.00 0.00 3.41
7438 10924 8.998377 CGTGTATGATGATATTTTGGTATGGAA 58.002 33.333 0.00 0.00 0.00 3.53
7519 11008 7.287696 ACTTCCAAACTGAGAACAAAACCATAT 59.712 33.333 0.00 0.00 0.00 1.78
7533 11022 2.776665 ACCATATTCCACTAGGCTGGT 58.223 47.619 0.00 0.00 32.13 4.00
7639 11128 7.202016 TCGAAGTGAATATTGCAAAGAACTT 57.798 32.000 1.71 9.42 0.00 2.66
7859 11351 4.432712 CTTTTTGCCCCTGTACATAATGC 58.567 43.478 0.00 0.00 0.00 3.56
8028 11521 3.489398 CGTATTCAGCTGTGGGTCTAGTC 60.489 52.174 14.67 0.00 0.00 2.59
8224 11720 5.080337 CAGGACCTATAGCTGTATGGAAGA 58.920 45.833 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.722056 CGAAGAAATTTGAAGAGAGAAAAAGAA 57.278 29.630 0.00 0.00 0.00 2.52
46 47 8.893727 ACGAAGAAATTTGAAGAGAGAAAAAGA 58.106 29.630 0.00 0.00 0.00 2.52
47 48 9.508567 AACGAAGAAATTTGAAGAGAGAAAAAG 57.491 29.630 0.00 0.00 0.00 2.27
48 49 9.855021 AAACGAAGAAATTTGAAGAGAGAAAAA 57.145 25.926 0.00 0.00 0.00 1.94
49 50 9.855021 AAAACGAAGAAATTTGAAGAGAGAAAA 57.145 25.926 0.00 0.00 0.00 2.29
50 51 9.855021 AAAAACGAAGAAATTTGAAGAGAGAAA 57.145 25.926 0.00 0.00 0.00 2.52
75 76 9.823647 TTCTTGATGCATACAAAAAGGTAAAAA 57.176 25.926 0.00 0.00 0.00 1.94
76 77 9.995003 ATTCTTGATGCATACAAAAAGGTAAAA 57.005 25.926 0.00 0.00 0.00 1.52
533 537 8.953368 TCTGACGTACTATATGAAGACTGTAA 57.047 34.615 0.00 0.00 0.00 2.41
618 622 9.516314 GTATGGAAGAAATAGGCATAAAAACAC 57.484 33.333 0.00 0.00 0.00 3.32
620 624 9.516314 GTGTATGGAAGAAATAGGCATAAAAAC 57.484 33.333 0.00 0.00 0.00 2.43
666 670 9.291664 CATGCATTTGAAAAACTGTTTTTGATT 57.708 25.926 29.73 13.44 42.51 2.57
670 674 7.155655 ACCATGCATTTGAAAAACTGTTTTT 57.844 28.000 26.25 26.25 44.93 1.94
671 675 6.756299 ACCATGCATTTGAAAAACTGTTTT 57.244 29.167 12.50 12.50 39.70 2.43
672 676 6.756299 AACCATGCATTTGAAAAACTGTTT 57.244 29.167 0.00 0.00 0.00 2.83
799 839 3.640407 TGGCAGACCACAGCCTCC 61.640 66.667 4.96 0.00 46.65 4.30
951 991 4.147322 CACATGTCGCGCCCGTTC 62.147 66.667 0.00 0.00 35.54 3.95
1314 1354 2.632544 ATTGGAGTCGGACGCGTCA 61.633 57.895 37.26 18.28 0.00 4.35
1328 1368 1.617755 CGCCGCTACTATCGCATTGG 61.618 60.000 0.00 0.00 0.00 3.16
1435 1475 6.318144 ACTCATGAATGGACAAAATAGCAGAG 59.682 38.462 0.00 0.00 0.00 3.35
1447 1487 3.755378 ACTCAAGCAACTCATGAATGGAC 59.245 43.478 9.51 0.00 0.00 4.02
1456 1496 0.761187 AGGAGCACTCAAGCAACTCA 59.239 50.000 0.00 0.00 36.85 3.41
1473 1513 1.004918 GTTGGACACCGGAGTCAGG 60.005 63.158 29.44 7.88 40.29 3.86
1478 1518 0.244994 CTCAGAGTTGGACACCGGAG 59.755 60.000 9.46 1.26 0.00 4.63
1679 1719 4.568359 AGATGACATAAGCACACGACATTC 59.432 41.667 0.00 0.00 0.00 2.67
1740 1781 4.996788 AATTCATGGGTCAGAAATCAGC 57.003 40.909 0.00 0.00 0.00 4.26
1741 1782 6.276832 ACAAATTCATGGGTCAGAAATCAG 57.723 37.500 0.00 0.00 0.00 2.90
1760 1801 8.881743 TCAGCGTTTACTTTCTAAAACTACAAA 58.118 29.630 0.00 0.00 34.21 2.83
1776 1817 7.437793 AGGTATCTATCTACTCAGCGTTTAC 57.562 40.000 0.00 0.00 0.00 2.01
1777 1818 6.368243 CGAGGTATCTATCTACTCAGCGTTTA 59.632 42.308 0.00 0.00 0.00 2.01
1778 1819 5.179742 CGAGGTATCTATCTACTCAGCGTTT 59.820 44.000 0.00 0.00 0.00 3.60
1779 1820 4.691685 CGAGGTATCTATCTACTCAGCGTT 59.308 45.833 0.00 0.00 0.00 4.84
1780 1821 4.247258 CGAGGTATCTATCTACTCAGCGT 58.753 47.826 0.00 0.00 0.00 5.07
1781 1822 3.062909 GCGAGGTATCTATCTACTCAGCG 59.937 52.174 0.00 0.00 0.00 5.18
1783 1824 4.998033 TGTGCGAGGTATCTATCTACTCAG 59.002 45.833 0.00 0.00 0.00 3.35
1785 1826 5.238868 TGTTGTGCGAGGTATCTATCTACTC 59.761 44.000 0.00 0.00 0.00 2.59
1918 1976 7.652300 TTGTATCGCACTTATTCATATCCAC 57.348 36.000 0.00 0.00 0.00 4.02
1946 2004 3.367703 GCAAGGTGATTGTTCTGGGAATG 60.368 47.826 0.00 0.00 41.29 2.67
1957 2015 1.784358 ATGGGATGGCAAGGTGATTG 58.216 50.000 0.00 0.00 42.20 2.67
1963 2021 3.243975 GCTATGAAAATGGGATGGCAAGG 60.244 47.826 0.00 0.00 0.00 3.61
2065 3859 7.809806 CACTGAATCCTTTGTCAAATAAACTCC 59.190 37.037 0.00 0.00 0.00 3.85
2067 3861 7.255942 CCCACTGAATCCTTTGTCAAATAAACT 60.256 37.037 0.00 0.00 0.00 2.66
2130 3924 5.178438 GCTGCTGTTATTATCAGTCTAAGGC 59.822 44.000 0.00 0.00 35.60 4.35
2135 3929 6.409704 TCTTTGCTGCTGTTATTATCAGTCT 58.590 36.000 0.00 0.00 35.60 3.24
2143 3937 9.415544 CTTAATTTCTTCTTTGCTGCTGTTATT 57.584 29.630 0.00 0.00 0.00 1.40
2144 3938 7.543520 GCTTAATTTCTTCTTTGCTGCTGTTAT 59.456 33.333 0.00 0.00 0.00 1.89
2145 3939 6.863126 GCTTAATTTCTTCTTTGCTGCTGTTA 59.137 34.615 0.00 0.00 0.00 2.41
2153 3947 6.309009 GCTAACTGGCTTAATTTCTTCTTTGC 59.691 38.462 0.00 0.00 0.00 3.68
2188 3984 6.624861 GCGAATTTGAAACTTGATCCCATGTA 60.625 38.462 0.00 0.00 31.40 2.29
2205 4001 4.452455 AGAGTACTTGACCTTGCGAATTTG 59.548 41.667 0.00 0.00 0.00 2.32
2237 4033 1.675310 CTGCAAACCGCCAGATGGA 60.675 57.895 2.18 0.00 41.33 3.41
2272 4068 0.109319 GTTATGCCCGCCAAACTGTG 60.109 55.000 0.00 0.00 0.00 3.66
2273 4069 0.538516 TGTTATGCCCGCCAAACTGT 60.539 50.000 3.78 0.00 0.00 3.55
2274 4070 0.600557 TTGTTATGCCCGCCAAACTG 59.399 50.000 3.78 0.00 0.00 3.16
2275 4071 1.333177 TTTGTTATGCCCGCCAAACT 58.667 45.000 3.78 0.00 0.00 2.66
2282 4078 3.798337 GCTGATTTCATTTGTTATGCCCG 59.202 43.478 0.00 0.00 0.00 6.13
2290 4086 6.335471 TGTTCATGAGCTGATTTCATTTGT 57.665 33.333 11.09 0.00 33.14 2.83
2294 4090 5.587443 TCGAATGTTCATGAGCTGATTTCAT 59.413 36.000 11.09 0.00 35.73 2.57
2317 4113 6.004574 GGTCCTGGATAAATTGGGATACTTC 58.995 44.000 0.00 0.00 0.00 3.01
2320 4116 5.515008 GGAGGTCCTGGATAAATTGGGATAC 60.515 48.000 0.00 0.00 0.00 2.24
2389 4185 1.838913 AAGTCACGCAACATGCAAAC 58.161 45.000 2.99 0.00 45.36 2.93
2450 4246 8.955388 ACTGCCAAACTGTTCAAAATTAATTTT 58.045 25.926 18.40 18.40 40.37 1.82
2502 4343 3.297134 ACTACTGGCATTATTGTGGGG 57.703 47.619 0.00 0.00 0.00 4.96
2503 4344 4.336433 CAGAACTACTGGCATTATTGTGGG 59.664 45.833 0.00 0.00 42.39 4.61
2510 4351 9.330063 CAAAGATATTCAGAACTACTGGCATTA 57.670 33.333 0.00 0.00 45.76 1.90
2723 4565 0.035630 GAGTTCCATGCTGAGGCTGT 60.036 55.000 0.00 0.00 39.59 4.40
2764 4606 5.948992 ATGTGAAGGAGAAGTAAAGCAAC 57.051 39.130 0.00 0.00 0.00 4.17
2789 4631 5.343307 TGCAAGCTGATGAGTAGTATTCA 57.657 39.130 0.00 0.00 0.00 2.57
2803 4645 0.381801 AGTCCGTGTTTTGCAAGCTG 59.618 50.000 0.00 0.00 0.00 4.24
2819 4661 4.617223 GCTGCGGAAAATTGTTTAGAAGTC 59.383 41.667 0.00 0.00 0.00 3.01
2903 4745 6.362820 GCTAACAATATCTAACAGCTACCGTC 59.637 42.308 0.00 0.00 0.00 4.79
2904 4746 6.183360 TGCTAACAATATCTAACAGCTACCGT 60.183 38.462 0.00 0.00 0.00 4.83
2905 4747 6.144080 GTGCTAACAATATCTAACAGCTACCG 59.856 42.308 0.00 0.00 0.00 4.02
2963 4805 2.167487 CCTAGAACTCTCCCTTCTGTGC 59.833 54.545 0.00 0.00 0.00 4.57
3007 4849 7.068103 CCACCTACCAGAATTACAATTTGCATA 59.932 37.037 0.00 0.00 0.00 3.14
3025 4867 9.628500 AGAATTACAAAATAAGATCCACCTACC 57.372 33.333 0.00 0.00 0.00 3.18
3034 4876 9.178758 GTGAGGGACAGAATTACAAAATAAGAT 57.821 33.333 0.00 0.00 0.00 2.40
3062 4904 3.010584 AGCATCCATTGTCACTAAACCCT 59.989 43.478 0.00 0.00 0.00 4.34
3099 4941 3.728864 GCAATGTGCGACCATAAAGAGTG 60.729 47.826 0.00 0.00 31.71 3.51
3100 4942 2.420022 GCAATGTGCGACCATAAAGAGT 59.580 45.455 0.00 0.00 31.71 3.24
3173 5015 7.318141 TGAGAGGGTTAACTGTTAAGAATACG 58.682 38.462 12.97 0.00 0.00 3.06
3276 5118 2.092323 GGCAAGAGGGTTATGTCAACC 58.908 52.381 0.00 0.00 39.56 3.77
3325 5167 4.752879 TAAGAGGTGCGCACGGCC 62.753 66.667 32.35 22.76 42.61 6.13
3330 5172 1.305219 GCAATGGTAAGAGGTGCGCA 61.305 55.000 5.66 5.66 0.00 6.09
3332 5174 0.676466 TGGCAATGGTAAGAGGTGCG 60.676 55.000 0.00 0.00 36.04 5.34
3334 5176 3.624777 AGATTGGCAATGGTAAGAGGTG 58.375 45.455 19.07 0.00 0.00 4.00
3335 5177 3.372025 GGAGATTGGCAATGGTAAGAGGT 60.372 47.826 19.07 0.00 0.00 3.85
3336 5178 3.217626 GGAGATTGGCAATGGTAAGAGG 58.782 50.000 19.07 0.00 0.00 3.69
3392 5543 1.527433 GAGAAGTTTGGGGGCAGCAC 61.527 60.000 0.00 0.00 0.00 4.40
3393 5544 1.228552 GAGAAGTTTGGGGGCAGCA 60.229 57.895 0.00 0.00 0.00 4.41
3414 5565 1.612199 GGTGTATTGAAAGACGGGCCA 60.612 52.381 4.39 0.00 0.00 5.36
3415 5566 1.092348 GGTGTATTGAAAGACGGGCC 58.908 55.000 0.00 0.00 0.00 5.80
3420 5571 3.751518 AGGTGGTGGTGTATTGAAAGAC 58.248 45.455 0.00 0.00 0.00 3.01
3429 5580 1.972795 GGTGAGTTAGGTGGTGGTGTA 59.027 52.381 0.00 0.00 0.00 2.90
3443 5594 2.092592 ACAAACGGGAAAGAAGGTGAGT 60.093 45.455 0.00 0.00 0.00 3.41
3447 5598 2.304092 GGAACAAACGGGAAAGAAGGT 58.696 47.619 0.00 0.00 0.00 3.50
3489 5640 1.727467 GGAAAATGGGCGATGACGG 59.273 57.895 0.00 0.00 40.15 4.79
3667 5818 3.498774 AATCTATCCATGGTGGCAGTC 57.501 47.619 12.58 0.00 37.47 3.51
3689 5840 5.427157 TCCAAGTAATCCTACAAGCATGGTA 59.573 40.000 0.00 0.00 0.00 3.25
3690 5841 4.227300 TCCAAGTAATCCTACAAGCATGGT 59.773 41.667 0.00 0.00 0.00 3.55
3696 5847 6.608002 AGACCTAGTCCAAGTAATCCTACAAG 59.392 42.308 0.00 0.00 32.18 3.16
3700 5851 6.337185 TCAGACCTAGTCCAAGTAATCCTA 57.663 41.667 0.00 0.00 32.18 2.94
3704 5855 7.560368 CAAGAATCAGACCTAGTCCAAGTAAT 58.440 38.462 0.00 0.00 32.18 1.89
3736 5887 9.331282 GTCTCCTACAAATAGAAGCAATATTGT 57.669 33.333 16.61 0.00 0.00 2.71
3742 5893 5.755409 TGGTCTCCTACAAATAGAAGCAA 57.245 39.130 0.00 0.00 0.00 3.91
3748 5899 5.192927 TGCCAAATGGTCTCCTACAAATAG 58.807 41.667 0.71 0.00 37.57 1.73
3761 5912 6.716628 CCTATGTAACATATCTGCCAAATGGT 59.283 38.462 0.71 0.00 37.57 3.55
3809 5962 3.134574 TGTGAAGGGTTTCTTGCGTAT 57.865 42.857 0.00 0.00 35.50 3.06
3810 5963 2.623878 TGTGAAGGGTTTCTTGCGTA 57.376 45.000 0.00 0.00 35.50 4.42
3812 5965 2.607771 CCATTGTGAAGGGTTTCTTGCG 60.608 50.000 0.00 0.00 35.50 4.85
3813 5966 2.289010 CCCATTGTGAAGGGTTTCTTGC 60.289 50.000 0.00 0.00 40.34 4.01
3814 5967 2.299867 CCCCATTGTGAAGGGTTTCTTG 59.700 50.000 0.00 0.00 43.89 3.02
3815 5968 2.178984 TCCCCATTGTGAAGGGTTTCTT 59.821 45.455 0.00 0.00 43.89 2.52
3816 5969 1.786441 TCCCCATTGTGAAGGGTTTCT 59.214 47.619 0.00 0.00 43.89 2.52
3817 5970 2.299013 GTTCCCCATTGTGAAGGGTTTC 59.701 50.000 0.00 0.00 43.89 2.78
3820 5973 1.158007 AGTTCCCCATTGTGAAGGGT 58.842 50.000 0.00 0.00 43.89 4.34
3948 6104 6.405397 GGCATCCAACTAAAAACCATAACGAT 60.405 38.462 0.00 0.00 0.00 3.73
4097 6254 6.969043 TGAAGGTGGTACAGAAATATCCAAT 58.031 36.000 0.00 0.00 41.80 3.16
4132 6289 8.739972 AGCCTAAAAGGACACTAAATTACAATG 58.260 33.333 0.00 0.00 37.67 2.82
4183 6437 7.860872 AGGTTCGTATTAGTTGCTTTTGAAAAG 59.139 33.333 13.09 13.09 0.00 2.27
4203 6457 3.915437 AATGTTGCTGGTAAAGGTTCG 57.085 42.857 0.00 0.00 0.00 3.95
4227 6481 2.367202 CCCCTCTCCCGCTAGCAAA 61.367 63.158 16.45 0.00 0.00 3.68
4229 6483 4.860881 CCCCCTCTCCCGCTAGCA 62.861 72.222 16.45 0.00 0.00 3.49
4248 6502 0.035343 GTTCAAGCACCTAGACCCCC 60.035 60.000 0.00 0.00 0.00 5.40
4249 6503 0.984995 AGTTCAAGCACCTAGACCCC 59.015 55.000 0.00 0.00 0.00 4.95
4250 6504 2.861147 AAGTTCAAGCACCTAGACCC 57.139 50.000 0.00 0.00 0.00 4.46
4251 6505 5.047235 TCTCTAAAGTTCAAGCACCTAGACC 60.047 44.000 0.00 0.00 0.00 3.85
4252 6506 6.026947 TCTCTAAAGTTCAAGCACCTAGAC 57.973 41.667 0.00 0.00 0.00 2.59
4253 6507 6.859112 ATCTCTAAAGTTCAAGCACCTAGA 57.141 37.500 0.00 0.00 0.00 2.43
4307 6584 9.508567 GGATTACTGATTAAGCTCAACATTTTC 57.491 33.333 0.00 0.00 0.00 2.29
4321 6598 6.551975 TCAGACCATAACCGGATTACTGATTA 59.448 38.462 9.46 0.00 0.00 1.75
4329 6606 3.104512 TCAGTCAGACCATAACCGGATT 58.895 45.455 9.46 0.67 0.00 3.01
4365 6642 2.499693 CCATCATACCACCCCCAAAAAC 59.500 50.000 0.00 0.00 0.00 2.43
4405 6682 2.320781 CCACCCCACAAACCAATTACA 58.679 47.619 0.00 0.00 0.00 2.41
4418 6695 2.622977 GGAGCAATATTGAACCACCCCA 60.623 50.000 19.73 0.00 0.00 4.96
4436 6713 5.187576 TCCTGGAAAGCAATATTTTTGGGAG 59.812 40.000 0.00 0.00 0.00 4.30
4442 6719 4.441913 CGGCATCCTGGAAAGCAATATTTT 60.442 41.667 21.21 0.00 0.00 1.82
4447 6724 0.034186 TCGGCATCCTGGAAAGCAAT 60.034 50.000 21.21 0.00 0.00 3.56
4483 6772 8.186178 ACATCGAAGAACAATGTGTAGTTATC 57.814 34.615 0.00 0.00 43.58 1.75
4508 6797 5.487488 ACAAATCACCCCTGTCATAGAGTTA 59.513 40.000 0.00 0.00 0.00 2.24
4517 6861 1.250840 GCCCACAAATCACCCCTGTC 61.251 60.000 0.00 0.00 0.00 3.51
4531 6875 3.960102 TGAATAATCATTGGAAGGCCCAC 59.040 43.478 0.00 0.00 46.62 4.61
4546 6890 6.412362 AGGAGTACGCAGAGAATGAATAAT 57.588 37.500 0.00 0.00 0.00 1.28
4555 6899 0.966179 TGCAAAGGAGTACGCAGAGA 59.034 50.000 0.00 0.00 0.00 3.10
4707 7051 0.106708 ATATCCATGCTGCGTTCGGT 59.893 50.000 0.00 0.00 0.00 4.69
4810 7154 7.537596 TTTCTAATCTGCATTTTGGAAAGGA 57.462 32.000 13.01 0.00 0.00 3.36
5013 7366 5.142635 TGCGTCATCATCTTTACATTTCG 57.857 39.130 0.00 0.00 0.00 3.46
5032 7385 7.683676 GCAACATTTTGATAATTTTGTACTGCG 59.316 33.333 0.00 0.00 34.24 5.18
5051 7404 6.490040 AGTTTGTCATTAGTGGTAGCAACATT 59.510 34.615 0.00 0.00 0.00 2.71
5055 7408 5.825679 ACAAGTTTGTCATTAGTGGTAGCAA 59.174 36.000 0.00 0.00 36.50 3.91
5065 7418 9.344772 ACAAATACTGGTACAAGTTTGTCATTA 57.655 29.630 8.55 0.00 40.55 1.90
5077 7432 6.999272 TGGAGCTTAAAACAAATACTGGTACA 59.001 34.615 0.00 0.00 0.00 2.90
5099 7454 8.352137 AGATATGTTCATGTTTTTGATGTGGA 57.648 30.769 0.00 0.00 0.00 4.02
5137 7493 5.583495 TGACAAGTGTTTGGTTATTTTCCG 58.417 37.500 0.00 0.00 38.66 4.30
5191 7547 7.268586 TCTAGAGTTGATAGTTGCCAATTCTC 58.731 38.462 0.00 0.00 39.20 2.87
5214 7570 5.186198 GTGGCATAATGGACTGTTTACTCT 58.814 41.667 0.00 0.00 0.00 3.24
5215 7571 4.941263 TGTGGCATAATGGACTGTTTACTC 59.059 41.667 0.00 0.00 0.00 2.59
5254 7610 6.183360 TGTCGAATTAGCAGCACTTAAGAATG 60.183 38.462 10.09 5.79 0.00 2.67
5280 7691 7.867403 GTGAGAAATGGCAGTTAAATTCTTGAA 59.133 33.333 0.00 0.00 0.00 2.69
5287 7698 6.899393 TTCAGTGAGAAATGGCAGTTAAAT 57.101 33.333 0.00 0.00 32.05 1.40
5288 7699 6.899393 ATTCAGTGAGAAATGGCAGTTAAA 57.101 33.333 0.00 0.00 40.22 1.52
5289 7700 7.119699 CAGTATTCAGTGAGAAATGGCAGTTAA 59.880 37.037 0.00 0.00 40.22 2.01
5306 7717 1.860950 CGGACGCCAATCAGTATTCAG 59.139 52.381 0.00 0.00 0.00 3.02
5313 7724 1.094785 AAATTCCGGACGCCAATCAG 58.905 50.000 1.83 0.00 0.00 2.90
5324 7735 0.247185 ATGCTGCCACAAAATTCCGG 59.753 50.000 0.00 0.00 0.00 5.14
5357 7769 5.311265 TGATATCATCCATGAAAGGCTGAC 58.689 41.667 0.00 0.00 40.69 3.51
5385 7797 8.256611 ACAGTACTGTGCATAGATTGTAAAAG 57.743 34.615 27.41 0.00 43.11 2.27
5404 7816 9.329913 CAAATTGACATAAGCTGTTAACAGTAC 57.670 33.333 30.90 18.45 45.45 2.73
5484 7896 1.198759 GGGCTGTTCCTGAGGGTGTA 61.199 60.000 0.00 0.00 34.39 2.90
5753 8165 2.959220 AAGCAAAGCAACAGCACCGC 62.959 55.000 0.00 0.00 0.00 5.68
5811 8223 5.364157 AGTTGCTGTAATTAGTCTAGGGAGG 59.636 44.000 0.00 0.00 0.00 4.30
5856 8268 5.042463 TCACTTGATTTAGTGTTGTCCCA 57.958 39.130 0.00 0.00 44.62 4.37
5859 8271 6.621596 GCAGGATCACTTGATTTAGTGTTGTC 60.622 42.308 0.00 0.00 44.62 3.18
5977 8389 9.620259 ACTACTTTGTTTCATTTCTTTCTCTCT 57.380 29.630 0.00 0.00 0.00 3.10
5978 8390 9.657121 CACTACTTTGTTTCATTTCTTTCTCTC 57.343 33.333 0.00 0.00 0.00 3.20
5979 8391 9.396022 TCACTACTTTGTTTCATTTCTTTCTCT 57.604 29.630 0.00 0.00 0.00 3.10
6002 8414 3.292460 ACCTACCTGCTCAGAGTATCAC 58.708 50.000 0.00 0.00 37.82 3.06
6003 8415 3.671740 ACCTACCTGCTCAGAGTATCA 57.328 47.619 0.00 0.00 37.82 2.15
6006 8418 5.188988 TCTTTACCTACCTGCTCAGAGTA 57.811 43.478 0.00 0.00 0.00 2.59
6147 9631 2.560504 TGCCATCAGTAATGCTAACGG 58.439 47.619 0.00 0.00 33.71 4.44
6212 9696 9.581099 AAAAACATTACTCAACACGAAAAAGAT 57.419 25.926 0.00 0.00 0.00 2.40
6260 9746 6.097839 ACACCACACTTTCTAGTTCAAGACTA 59.902 38.462 6.21 0.00 39.86 2.59
6261 9747 5.104900 ACACCACACTTTCTAGTTCAAGACT 60.105 40.000 6.21 0.00 42.55 3.24
6266 9752 4.481368 ACACACCACACTTTCTAGTTCA 57.519 40.909 0.00 0.00 30.26 3.18
6270 9756 9.871238 ATAGTTAATACACACCACACTTTCTAG 57.129 33.333 0.00 0.00 0.00 2.43
6277 9763 5.293569 GCAGGATAGTTAATACACACCACAC 59.706 44.000 0.00 0.00 0.00 3.82
6292 9778 7.281774 CACAAGAGTTAAATCATGCAGGATAGT 59.718 37.037 15.20 8.41 0.00 2.12
6297 9783 5.633830 ACACAAGAGTTAAATCATGCAGG 57.366 39.130 7.96 0.00 0.00 4.85
6419 9905 5.185828 AGACAAACCTCTTTTTCAACAAGCT 59.814 36.000 0.00 0.00 0.00 3.74
6477 9963 7.642586 ACACTATGCTTTTCAAAACTTTACGTC 59.357 33.333 0.00 0.00 0.00 4.34
6702 10188 6.259550 AGTTTGTACAATGCTCAATTCTCC 57.740 37.500 9.56 0.00 0.00 3.71
6786 10272 3.056393 CCATCAGCTCAATCTTTGCCAAA 60.056 43.478 0.00 0.00 0.00 3.28
6863 10349 9.520204 ACATTTTATTTCAGCTACATTACATGC 57.480 29.630 0.00 0.00 0.00 4.06
6995 10481 4.450305 ACGGAGGGAGTATACTGTATGT 57.550 45.455 10.90 0.00 0.00 2.29
7014 10500 2.099621 CGAGACGAGTAATTCCGAACG 58.900 52.381 0.00 0.00 0.00 3.95
7015 10501 2.096496 TCCGAGACGAGTAATTCCGAAC 59.904 50.000 0.00 0.00 0.00 3.95
7016 10502 2.358957 TCCGAGACGAGTAATTCCGAA 58.641 47.619 0.00 0.00 0.00 4.30
7017 10503 2.028420 TCCGAGACGAGTAATTCCGA 57.972 50.000 0.00 0.00 0.00 4.55
7018 10504 4.153655 TCATATCCGAGACGAGTAATTCCG 59.846 45.833 0.00 0.00 0.00 4.30
7019 10505 5.624344 TCATATCCGAGACGAGTAATTCC 57.376 43.478 0.00 0.00 0.00 3.01
7020 10506 7.085116 ACATTCATATCCGAGACGAGTAATTC 58.915 38.462 0.00 0.00 0.00 2.17
7021 10507 6.982852 ACATTCATATCCGAGACGAGTAATT 58.017 36.000 0.00 0.00 0.00 1.40
7022 10508 6.576662 ACATTCATATCCGAGACGAGTAAT 57.423 37.500 0.00 0.00 0.00 1.89
7023 10509 7.606839 AGATACATTCATATCCGAGACGAGTAA 59.393 37.037 0.00 0.00 32.76 2.24
7024 10510 7.104290 AGATACATTCATATCCGAGACGAGTA 58.896 38.462 0.00 0.00 32.76 2.59
7025 10511 5.941058 AGATACATTCATATCCGAGACGAGT 59.059 40.000 0.00 0.00 32.76 4.18
7026 10512 6.429791 AGATACATTCATATCCGAGACGAG 57.570 41.667 0.00 0.00 32.76 4.18
7027 10513 7.328737 TCTAGATACATTCATATCCGAGACGA 58.671 38.462 0.00 0.00 32.76 4.20
7028 10514 7.541122 TCTAGATACATTCATATCCGAGACG 57.459 40.000 0.00 0.00 32.76 4.18
7056 10542 9.832445 ACAAATGGATGTATCTAGACGTATTTT 57.168 29.630 0.00 0.00 0.00 1.82
7058 10544 9.909644 GTACAAATGGATGTATCTAGACGTATT 57.090 33.333 0.00 0.00 38.03 1.89
7059 10545 8.235226 CGTACAAATGGATGTATCTAGACGTAT 58.765 37.037 0.00 0.00 38.03 3.06
7060 10546 7.308169 CCGTACAAATGGATGTATCTAGACGTA 60.308 40.741 0.00 0.00 38.03 3.57
7061 10547 6.436261 CGTACAAATGGATGTATCTAGACGT 58.564 40.000 0.00 0.00 38.03 4.34
7062 10548 5.856986 CCGTACAAATGGATGTATCTAGACG 59.143 44.000 0.00 0.00 38.03 4.18
7063 10549 5.634020 GCCGTACAAATGGATGTATCTAGAC 59.366 44.000 0.00 0.00 38.03 2.59
7064 10550 5.303333 TGCCGTACAAATGGATGTATCTAGA 59.697 40.000 0.00 0.00 38.03 2.43
7065 10551 5.538118 TGCCGTACAAATGGATGTATCTAG 58.462 41.667 0.00 0.00 38.03 2.43
7066 10552 5.538849 TGCCGTACAAATGGATGTATCTA 57.461 39.130 0.00 0.00 38.03 1.98
7067 10553 4.415881 TGCCGTACAAATGGATGTATCT 57.584 40.909 0.00 0.00 38.03 1.98
7068 10554 4.574828 ACTTGCCGTACAAATGGATGTATC 59.425 41.667 0.00 0.00 38.03 2.24
7069 10555 4.523083 ACTTGCCGTACAAATGGATGTAT 58.477 39.130 0.00 0.00 38.03 2.29
7070 10556 3.945346 ACTTGCCGTACAAATGGATGTA 58.055 40.909 0.00 0.00 37.96 2.29
7071 10557 2.790433 ACTTGCCGTACAAATGGATGT 58.210 42.857 0.00 0.00 37.96 3.06
7072 10558 4.955925 TTACTTGCCGTACAAATGGATG 57.044 40.909 0.00 0.00 37.96 3.51
7073 10559 5.067283 GGAATTACTTGCCGTACAAATGGAT 59.933 40.000 0.00 0.00 37.96 3.41
7074 10560 4.396790 GGAATTACTTGCCGTACAAATGGA 59.603 41.667 0.00 0.00 37.96 3.41
7075 10561 4.668289 GGAATTACTTGCCGTACAAATGG 58.332 43.478 0.00 0.00 37.96 3.16
7076 10562 4.093703 TCGGAATTACTTGCCGTACAAATG 59.906 41.667 0.00 0.00 45.02 2.32
7077 10563 4.255301 TCGGAATTACTTGCCGTACAAAT 58.745 39.130 0.00 0.00 45.02 2.32
7078 10564 3.661944 TCGGAATTACTTGCCGTACAAA 58.338 40.909 0.00 0.00 45.02 2.83
7079 10565 3.316071 TCGGAATTACTTGCCGTACAA 57.684 42.857 0.00 0.00 45.02 2.41
7080 10566 2.995258 GTTCGGAATTACTTGCCGTACA 59.005 45.455 0.00 0.00 45.02 2.90
7081 10567 2.028404 CGTTCGGAATTACTTGCCGTAC 59.972 50.000 0.00 0.00 45.02 3.67
7082 10568 2.261345 CGTTCGGAATTACTTGCCGTA 58.739 47.619 0.00 0.00 45.02 4.02
7083 10569 1.073177 CGTTCGGAATTACTTGCCGT 58.927 50.000 0.00 0.00 45.02 5.68
7084 10570 0.372334 CCGTTCGGAATTACTTGCCG 59.628 55.000 5.19 0.00 46.08 5.69
7085 10571 1.664151 CTCCGTTCGGAATTACTTGCC 59.336 52.381 14.79 0.00 33.41 4.52
7086 10572 1.664151 CCTCCGTTCGGAATTACTTGC 59.336 52.381 14.79 0.00 33.41 4.01
7087 10573 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
7088 10574 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
7089 10575 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
7090 10576 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
7091 10577 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
7092 10578 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
7093 10579 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
7094 10580 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
7095 10581 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
7096 10582 0.455005 GAAGTACTCCCTCCGTTCGG 59.545 60.000 4.74 4.74 0.00 4.30
7097 10583 0.455005 GGAAGTACTCCCTCCGTTCG 59.545 60.000 0.00 0.00 38.44 3.95
7098 10584 1.849977 AGGAAGTACTCCCTCCGTTC 58.150 55.000 0.00 0.00 46.81 3.95
7099 10585 3.463048 TTAGGAAGTACTCCCTCCGTT 57.537 47.619 2.82 0.00 46.81 4.44
7100 10586 3.053095 TGATTAGGAAGTACTCCCTCCGT 60.053 47.826 2.82 0.00 46.81 4.69
7101 10587 3.563223 TGATTAGGAAGTACTCCCTCCG 58.437 50.000 2.82 0.00 46.81 4.63
7102 10588 5.367060 ACAATGATTAGGAAGTACTCCCTCC 59.633 44.000 2.82 3.63 46.81 4.30
7103 10589 6.487299 ACAATGATTAGGAAGTACTCCCTC 57.513 41.667 2.82 0.00 46.81 4.30
7104 10590 6.893020 AACAATGATTAGGAAGTACTCCCT 57.107 37.500 5.75 5.75 46.81 4.20
7105 10591 7.339482 AGAAACAATGATTAGGAAGTACTCCC 58.661 38.462 0.00 0.00 46.81 4.30
7106 10592 9.315525 GTAGAAACAATGATTAGGAAGTACTCC 57.684 37.037 0.00 0.00 45.81 3.85
7107 10593 9.315525 GGTAGAAACAATGATTAGGAAGTACTC 57.684 37.037 0.00 0.00 0.00 2.59
7108 10594 8.822805 TGGTAGAAACAATGATTAGGAAGTACT 58.177 33.333 0.00 0.00 0.00 2.73
7109 10595 9.614792 ATGGTAGAAACAATGATTAGGAAGTAC 57.385 33.333 0.00 0.00 0.00 2.73
7111 10597 8.960591 CAATGGTAGAAACAATGATTAGGAAGT 58.039 33.333 0.00 0.00 0.00 3.01
7112 10598 8.960591 ACAATGGTAGAAACAATGATTAGGAAG 58.039 33.333 0.00 0.00 0.00 3.46
7113 10599 8.877864 ACAATGGTAGAAACAATGATTAGGAA 57.122 30.769 0.00 0.00 0.00 3.36
7114 10600 8.877864 AACAATGGTAGAAACAATGATTAGGA 57.122 30.769 0.00 0.00 0.00 2.94
7115 10601 9.927668 AAAACAATGGTAGAAACAATGATTAGG 57.072 29.630 0.00 0.00 0.00 2.69
7118 10604 9.612066 ACAAAAACAATGGTAGAAACAATGATT 57.388 25.926 0.00 0.00 0.00 2.57
7119 10605 9.612066 AACAAAAACAATGGTAGAAACAATGAT 57.388 25.926 0.00 0.00 0.00 2.45
7120 10606 9.442047 AAACAAAAACAATGGTAGAAACAATGA 57.558 25.926 0.00 0.00 0.00 2.57
7124 10610 9.495572 AGAAAAACAAAAACAATGGTAGAAACA 57.504 25.926 0.00 0.00 0.00 2.83
7125 10611 9.753669 CAGAAAAACAAAAACAATGGTAGAAAC 57.246 29.630 0.00 0.00 0.00 2.78
7126 10612 9.712305 TCAGAAAAACAAAAACAATGGTAGAAA 57.288 25.926 0.00 0.00 0.00 2.52
7127 10613 9.883142 ATCAGAAAAACAAAAACAATGGTAGAA 57.117 25.926 0.00 0.00 0.00 2.10
7348 10834 3.103447 TCTGCTTCATCATTAGCCTCG 57.897 47.619 0.00 0.00 36.56 4.63
7434 10920 7.841282 TGGGAAACAAAATAATGTACTTCCA 57.159 32.000 11.10 1.09 39.99 3.53
7435 10921 9.719355 AAATGGGAAACAAAATAATGTACTTCC 57.281 29.630 0.00 3.41 38.57 3.46
7447 10936 9.651913 GAGCTATATGAAAAATGGGAAACAAAA 57.348 29.630 0.00 0.00 0.00 2.44
7497 10986 6.868339 GGAATATGGTTTTGTTCTCAGTTTGG 59.132 38.462 0.00 0.00 0.00 3.28
7519 11008 0.976641 CTGTGACCAGCCTAGTGGAA 59.023 55.000 6.39 0.00 40.44 3.53
7583 11072 4.844655 GGGGGATACATGGTTCTACATAGT 59.155 45.833 0.00 0.00 39.74 2.12
7639 11128 4.397730 GTCAAGTGTCTGCTAGAGATCTCA 59.602 45.833 24.39 9.69 31.63 3.27
7859 11351 5.333645 GCTCAATGCTACATATTTCTGGTCG 60.334 44.000 0.00 0.00 38.95 4.79
8028 11521 2.352651 CTCACAAACCATACCGCATGAG 59.647 50.000 0.00 0.00 36.69 2.90
8366 11870 7.746034 CGGAGCGTAGATATTTAAATACGTACA 59.254 37.037 17.79 0.00 42.18 2.90
8367 11871 7.217070 CCGGAGCGTAGATATTTAAATACGTAC 59.783 40.741 17.79 15.74 42.18 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.