Multiple sequence alignment - TraesCS7A01G326100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G326100 chr7A 100.000 5167 0 0 1 5167 474280305 474285471 0.000000e+00 9542.0
1 TraesCS7A01G326100 chr7A 83.047 873 136 10 1 868 219377527 219378392 0.000000e+00 782.0
2 TraesCS7A01G326100 chr7A 94.643 112 5 1 1625 1736 474281771 474281881 6.880000e-39 172.0
3 TraesCS7A01G326100 chr7A 94.643 112 5 1 1467 1577 474281929 474282040 6.880000e-39 172.0
4 TraesCS7A01G326100 chr7D 92.776 2381 118 22 1 2368 412870525 412872864 0.000000e+00 3395.0
5 TraesCS7A01G326100 chr7D 91.950 1118 57 18 3450 4546 412873253 412874358 0.000000e+00 1535.0
6 TraesCS7A01G326100 chr7D 96.386 332 11 1 3119 3450 412872872 412873202 3.520000e-151 545.0
7 TraesCS7A01G326100 chr7D 97.000 100 2 1 1624 1723 412871994 412872092 3.200000e-37 167.0
8 TraesCS7A01G326100 chr7D 92.982 114 5 2 4968 5078 412874745 412874858 4.140000e-36 163.0
9 TraesCS7A01G326100 chr7D 85.211 142 8 6 4764 4897 412874575 412874711 3.250000e-27 134.0
10 TraesCS7A01G326100 chr7D 98.246 57 1 0 4636 4692 412874380 412874436 3.290000e-17 100.0
11 TraesCS7A01G326100 chr7D 100.000 29 0 0 3422 3450 412873202 412873230 3.000000e-03 54.7
12 TraesCS7A01G326100 chr7B 93.269 1753 74 24 2829 4550 427289901 427291640 0.000000e+00 2543.0
13 TraesCS7A01G326100 chr7B 95.036 685 24 5 888 1566 427288724 427289404 0.000000e+00 1068.0
14 TraesCS7A01G326100 chr7B 94.828 464 18 1 1661 2124 427289441 427289898 0.000000e+00 719.0
15 TraesCS7A01G326100 chr7B 81.121 874 155 7 1 868 33420933 33421802 0.000000e+00 691.0
16 TraesCS7A01G326100 chr7B 77.212 373 35 16 4764 5115 427291960 427292303 6.880000e-39 172.0
17 TraesCS7A01G326100 chr7B 95.098 102 4 1 1624 1725 427289304 427289404 5.360000e-35 159.0
18 TraesCS7A01G326100 chr7B 98.246 57 1 0 4636 4692 427291661 427291717 3.290000e-17 100.0
19 TraesCS7A01G326100 chr7B 97.619 42 1 0 4693 4734 179195123 179195164 7.180000e-09 73.1
20 TraesCS7A01G326100 chr7B 94.872 39 2 0 4696 4734 32067308 32067270 1.550000e-05 62.1
21 TraesCS7A01G326100 chr5A 89.894 940 84 5 1965 2903 463652164 463653093 0.000000e+00 1199.0
22 TraesCS7A01G326100 chr5A 80.921 912 156 11 1 901 343043561 343042657 0.000000e+00 704.0
23 TraesCS7A01G326100 chr2D 86.728 874 106 7 1 868 622369178 622368309 0.000000e+00 963.0
24 TraesCS7A01G326100 chr3B 81.174 903 155 10 1 892 541062514 541061616 0.000000e+00 712.0
25 TraesCS7A01G326100 chr3B 87.500 96 8 4 1539 1630 99080210 99080305 1.970000e-19 108.0
26 TraesCS7A01G326100 chr1A 81.371 875 151 11 1 868 260842032 260842901 0.000000e+00 702.0
27 TraesCS7A01G326100 chr1A 95.652 46 1 1 4693 4737 329592157 329592112 7.180000e-09 73.1
28 TraesCS7A01G326100 chr1D 80.820 902 157 10 1 890 494486668 494487565 0.000000e+00 693.0
29 TraesCS7A01G326100 chr4D 81.128 869 155 6 1 864 126638477 126639341 0.000000e+00 688.0
30 TraesCS7A01G326100 chr4D 91.892 74 6 0 1549 1622 139044980 139045053 2.540000e-18 104.0
31 TraesCS7A01G326100 chr4D 97.368 38 1 0 4695 4732 231559544 231559507 1.200000e-06 65.8
32 TraesCS7A01G326100 chr4D 97.222 36 1 0 4693 4728 231645417 231645382 1.550000e-05 62.1
33 TraesCS7A01G326100 chr2B 93.103 87 4 2 1537 1622 765397936 765398021 5.430000e-25 126.0
34 TraesCS7A01G326100 chr2B 89.024 82 6 3 1542 1622 5482840 5482761 1.180000e-16 99.0
35 TraesCS7A01G326100 chr6D 91.250 80 5 2 1553 1630 93644474 93644395 1.970000e-19 108.0
36 TraesCS7A01G326100 chr6D 92.000 75 5 1 1542 1616 93644401 93644474 2.540000e-18 104.0
37 TraesCS7A01G326100 chrUn 90.123 81 8 0 1542 1622 50304198 50304278 7.080000e-19 106.0
38 TraesCS7A01G326100 chr4B 88.095 84 10 0 1539 1622 631418620 631418703 3.290000e-17 100.0
39 TraesCS7A01G326100 chr6B 100.000 39 0 0 4694 4732 337752434 337752472 7.180000e-09 73.1
40 TraesCS7A01G326100 chr6B 97.368 38 0 1 4691 4728 691528114 691528150 4.320000e-06 63.9
41 TraesCS7A01G326100 chr5D 93.182 44 2 1 4689 4732 228878750 228878708 4.320000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G326100 chr7A 474280305 474285471 5166 False 3295.333333 9542 96.428667 1 5167 3 chr7A.!!$F2 5166
1 TraesCS7A01G326100 chr7A 219377527 219378392 865 False 782.000000 782 83.047000 1 868 1 chr7A.!!$F1 867
2 TraesCS7A01G326100 chr7D 412870525 412874858 4333 False 761.712500 3395 94.318875 1 5078 8 chr7D.!!$F1 5077
3 TraesCS7A01G326100 chr7B 427288724 427292303 3579 False 793.500000 2543 92.281500 888 5115 6 chr7B.!!$F3 4227
4 TraesCS7A01G326100 chr7B 33420933 33421802 869 False 691.000000 691 81.121000 1 868 1 chr7B.!!$F1 867
5 TraesCS7A01G326100 chr5A 463652164 463653093 929 False 1199.000000 1199 89.894000 1965 2903 1 chr5A.!!$F1 938
6 TraesCS7A01G326100 chr5A 343042657 343043561 904 True 704.000000 704 80.921000 1 901 1 chr5A.!!$R1 900
7 TraesCS7A01G326100 chr2D 622368309 622369178 869 True 963.000000 963 86.728000 1 868 1 chr2D.!!$R1 867
8 TraesCS7A01G326100 chr3B 541061616 541062514 898 True 712.000000 712 81.174000 1 892 1 chr3B.!!$R1 891
9 TraesCS7A01G326100 chr1A 260842032 260842901 869 False 702.000000 702 81.371000 1 868 1 chr1A.!!$F1 867
10 TraesCS7A01G326100 chr1D 494486668 494487565 897 False 693.000000 693 80.820000 1 890 1 chr1D.!!$F1 889
11 TraesCS7A01G326100 chr4D 126638477 126639341 864 False 688.000000 688 81.128000 1 864 1 chr4D.!!$F1 863


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
467 470 0.185175 GGTATGATGGGGGTGGTTCC 59.815 60.0 0.00 0.0 0.00 3.62 F
1205 1224 0.254747 TCTACGCCCCCAAATCCAAG 59.745 55.0 0.00 0.0 0.00 3.61 F
2567 2588 0.252881 TTGAGCTCCTCCTGTGGGAT 60.253 55.0 12.15 0.0 41.36 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2293 2313 0.108186 TGCACAAGAGCGGTGATAGG 60.108 55.0 0.0 0.0 38.54 2.57 R
2653 2674 0.180171 TCATATGAGTTGGCCCCACG 59.820 55.0 0.0 0.0 0.00 4.94 R
4368 4477 0.470766 AACTTCTTACACACCCGGCA 59.529 50.0 0.0 0.0 0.00 5.69 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.356535 CCATTTGCCCTACTTGCTCTCT 60.357 50.000 0.00 0.00 0.00 3.10
28 29 2.770164 TTTGCCCTACTTGCTCTCTC 57.230 50.000 0.00 0.00 0.00 3.20
148 149 2.433604 GAGGTTGATCATGCTGGAGAGA 59.566 50.000 0.00 0.00 0.00 3.10
149 150 2.435069 AGGTTGATCATGCTGGAGAGAG 59.565 50.000 0.00 0.00 0.00 3.20
182 183 9.976776 TTGGAGTATCTTCTACTTCTTCTAGAA 57.023 33.333 4.81 4.81 33.73 2.10
225 226 4.511082 GGTTCCAAAATGTGTGTGAAATGG 59.489 41.667 0.00 0.00 0.00 3.16
275 276 7.014134 TGGTGAGAAAGACAGAAATTTATGCAA 59.986 33.333 12.62 0.00 0.00 4.08
278 279 9.985730 TGAGAAAGACAGAAATTTATGCAAAAT 57.014 25.926 12.62 0.00 0.00 1.82
301 302 9.582431 AAATGAATTAACTCAGAATGCATCTTG 57.418 29.630 0.00 1.47 32.30 3.02
310 311 5.957798 TCAGAATGCATCTTGGATTTCAAC 58.042 37.500 0.00 0.00 38.55 3.18
312 313 4.701651 AGAATGCATCTTGGATTTCAACGA 59.298 37.500 0.00 0.00 38.55 3.85
368 369 2.775418 TCATCTCCCAAGGCTTCCATA 58.225 47.619 0.00 0.00 0.00 2.74
375 376 3.591527 TCCCAAGGCTTCCATAAAAGAGA 59.408 43.478 0.00 0.00 0.00 3.10
376 377 4.230502 TCCCAAGGCTTCCATAAAAGAGAT 59.769 41.667 0.00 0.00 0.00 2.75
410 412 4.047627 CCTCCTAGGGGTTTTGTGAAAT 57.952 45.455 8.16 0.00 0.00 2.17
423 425 8.835439 GGGTTTTGTGAAATTTAATGTTGATGT 58.165 29.630 0.00 0.00 0.00 3.06
461 464 2.065799 GATGAAGGGTATGATGGGGGT 58.934 52.381 0.00 0.00 0.00 4.95
467 470 0.185175 GGTATGATGGGGGTGGTTCC 59.815 60.000 0.00 0.00 0.00 3.62
534 537 3.521560 TGAGTATTGTGCGGATGTTCTC 58.478 45.455 0.00 0.00 0.00 2.87
583 586 2.419574 GGCCTAATACTGACGCAAAGGA 60.420 50.000 0.00 0.00 0.00 3.36
642 645 5.211174 TGAAAATGATTGACACCATGCAA 57.789 34.783 0.00 0.00 0.00 4.08
766 774 9.023962 AGGCAAATAAATTAACTCATGAACTCA 57.976 29.630 0.00 0.00 0.00 3.41
806 814 6.554334 TTCTTCTACTTTGAATTGGTTCGG 57.446 37.500 0.00 0.00 37.15 4.30
830 838 6.816640 GGGGAGCCTTTAAATGAAATTGTAAC 59.183 38.462 0.00 0.00 36.10 2.50
1145 1160 1.869754 CGGCATCTGGAACTGGTATCG 60.870 57.143 0.00 0.00 0.00 2.92
1185 1204 1.076014 AACCACCGTTCCCCAATCC 59.924 57.895 0.00 0.00 0.00 3.01
1188 1207 1.562672 CCACCGTTCCCCAATCCTCT 61.563 60.000 0.00 0.00 0.00 3.69
1196 1215 2.819284 CCCAATCCTCTACGCCCCC 61.819 68.421 0.00 0.00 0.00 5.40
1205 1224 0.254747 TCTACGCCCCCAAATCCAAG 59.745 55.000 0.00 0.00 0.00 3.61
1222 1242 3.739300 TCCAAGAAACTCGTGAATTCGAC 59.261 43.478 0.04 0.00 35.91 4.20
1253 1273 2.863673 CGCGATTAGATGTCGTTTTCG 58.136 47.619 0.00 0.00 40.98 3.46
1292 1312 3.640029 GCTGATGTCATGAATCCCCAAAT 59.360 43.478 0.00 0.00 0.00 2.32
1305 1325 1.633432 CCCCAAATCAGGTACCTGTCA 59.367 52.381 35.34 21.68 43.96 3.58
1335 1355 4.047059 AGGTCGGTGTACGTGCGG 62.047 66.667 0.00 0.00 44.69 5.69
1465 1485 0.520847 GCTTCTTCAAGTGCTCTGCC 59.479 55.000 0.00 0.00 31.45 4.85
1512 1532 4.796038 AAGCTTTGTGCATTTCTAGCAT 57.204 36.364 0.00 0.00 44.79 3.79
1524 1544 5.106396 GCATTTCTAGCATATCCATGTGGTC 60.106 44.000 0.00 0.00 34.40 4.02
1527 1547 5.411831 TCTAGCATATCCATGTGGTCATC 57.588 43.478 0.00 0.00 34.40 2.92
1567 1587 6.700520 ACTCCTTTCGTTCCATAATTCGTATC 59.299 38.462 0.00 0.00 0.00 2.24
1568 1588 5.688621 TCCTTTCGTTCCATAATTCGTATCG 59.311 40.000 0.00 0.00 0.00 2.92
1569 1589 5.461078 CCTTTCGTTCCATAATTCGTATCGT 59.539 40.000 0.00 0.00 0.00 3.73
1570 1590 5.876576 TTCGTTCCATAATTCGTATCGTG 57.123 39.130 0.00 0.00 0.00 4.35
1571 1591 4.292599 TCGTTCCATAATTCGTATCGTGG 58.707 43.478 0.00 0.86 0.00 4.94
1572 1592 4.046462 CGTTCCATAATTCGTATCGTGGT 58.954 43.478 5.83 0.00 0.00 4.16
1573 1593 4.505191 CGTTCCATAATTCGTATCGTGGTT 59.495 41.667 5.83 0.00 0.00 3.67
1574 1594 5.005971 CGTTCCATAATTCGTATCGTGGTTT 59.994 40.000 5.83 0.00 0.00 3.27
1575 1595 6.455913 CGTTCCATAATTCGTATCGTGGTTTT 60.456 38.462 5.83 0.00 0.00 2.43
1576 1596 7.254050 CGTTCCATAATTCGTATCGTGGTTTTA 60.254 37.037 5.83 0.00 0.00 1.52
1577 1597 7.467557 TCCATAATTCGTATCGTGGTTTTAC 57.532 36.000 5.83 0.00 0.00 2.01
1578 1598 7.267128 TCCATAATTCGTATCGTGGTTTTACT 58.733 34.615 5.83 0.00 0.00 2.24
1579 1599 7.765360 TCCATAATTCGTATCGTGGTTTTACTT 59.235 33.333 5.83 0.00 0.00 2.24
1580 1600 8.060090 CCATAATTCGTATCGTGGTTTTACTTC 58.940 37.037 0.00 0.00 0.00 3.01
1586 1606 7.292292 TCGTATCGTGGTTTTACTTCAAATTG 58.708 34.615 0.00 0.00 0.00 2.32
1622 1642 4.514401 GACAAGAATTATGGAACGGAGGT 58.486 43.478 0.00 0.00 0.00 3.85
1650 1670 7.773224 ACACATCTCCAATCGGTAAATGATAAA 59.227 33.333 0.00 0.00 0.00 1.40
1700 1720 9.598517 CCATGTGGTTATTGCATTTTATTTACT 57.401 29.630 0.00 0.00 0.00 2.24
1722 1742 6.040878 ACTACTCCTTTCGTTCCATAATTCG 58.959 40.000 0.00 0.00 0.00 3.34
1726 1746 7.046033 ACTCCTTTCGTTCCATAATTCGTATT 58.954 34.615 0.00 0.00 0.00 1.89
1785 1805 4.776837 TGTGGTTGCATAGGAAATTCCAAT 59.223 37.500 15.21 0.00 39.61 3.16
1798 1818 6.378280 AGGAAATTCCAATGATCACCAACTAC 59.622 38.462 15.21 0.00 39.61 2.73
1799 1819 6.378280 GGAAATTCCAATGATCACCAACTACT 59.622 38.462 7.23 0.00 36.28 2.57
1800 1820 7.396540 AAATTCCAATGATCACCAACTACTC 57.603 36.000 0.00 0.00 0.00 2.59
1801 1821 4.123497 TCCAATGATCACCAACTACTCG 57.877 45.455 0.00 0.00 0.00 4.18
1802 1822 3.513912 TCCAATGATCACCAACTACTCGT 59.486 43.478 0.00 0.00 0.00 4.18
1803 1823 4.707934 TCCAATGATCACCAACTACTCGTA 59.292 41.667 0.00 0.00 0.00 3.43
1869 1889 1.585517 CAATGTGAACGCATGGCCA 59.414 52.632 8.56 8.56 0.00 5.36
1950 1970 1.632589 ACCATTTGGAGGCAAAGACC 58.367 50.000 3.01 0.00 38.94 3.85
2073 2093 3.543680 TTCAAAACCGGCCAAATTTCA 57.456 38.095 0.00 0.00 0.00 2.69
2302 2322 2.586079 CAGCCGTGCCTATCACCG 60.586 66.667 0.00 0.00 42.69 4.94
2368 2388 1.376424 CCGCACATGGCTTCTGACT 60.376 57.895 0.00 0.00 41.67 3.41
2372 2392 1.073964 CACATGGCTTCTGACTGACG 58.926 55.000 0.00 0.00 0.00 4.35
2432 2453 1.152881 GTCTGGGGGCATGGATGAC 60.153 63.158 0.00 0.00 34.16 3.06
2433 2454 2.203252 CTGGGGGCATGGATGACG 60.203 66.667 0.00 0.00 36.40 4.35
2438 2459 1.379843 GGGCATGGATGACGGGTTT 60.380 57.895 0.00 0.00 36.40 3.27
2456 2477 1.838073 TTCTCTCCCCGTGCTTTCCC 61.838 60.000 0.00 0.00 0.00 3.97
2461 2482 0.544697 TCCCCGTGCTTTCCCTATTC 59.455 55.000 0.00 0.00 0.00 1.75
2480 2501 2.496111 TCCGGTTTCGCTGTTGTATTT 58.504 42.857 0.00 0.00 34.56 1.40
2484 2505 4.201685 CCGGTTTCGCTGTTGTATTTCTAG 60.202 45.833 0.00 0.00 34.56 2.43
2493 2514 6.337356 GCTGTTGTATTTCTAGCTCTCTCTT 58.663 40.000 0.00 0.00 0.00 2.85
2494 2515 6.255453 GCTGTTGTATTTCTAGCTCTCTCTTG 59.745 42.308 0.00 0.00 0.00 3.02
2497 2518 6.125327 TGTATTTCTAGCTCTCTCTTGTCG 57.875 41.667 0.00 0.00 0.00 4.35
2539 2560 1.388133 GGGGATGACCTGGCCTTTT 59.612 57.895 3.32 0.00 40.03 2.27
2546 2567 0.600057 GACCTGGCCTTTTGCAAGAG 59.400 55.000 9.98 9.98 44.57 2.85
2547 2568 0.829182 ACCTGGCCTTTTGCAAGAGG 60.829 55.000 27.58 27.58 44.57 3.69
2567 2588 0.252881 TTGAGCTCCTCCTGTGGGAT 60.253 55.000 12.15 0.00 41.36 3.85
2574 2595 1.386485 CTCCTGTGGGATGGGGGAT 60.386 63.158 0.00 0.00 41.36 3.85
2583 2604 1.076192 GATGGGGGATGAGGCATGG 59.924 63.158 0.00 0.00 0.00 3.66
2596 2617 1.589716 GGCATGGTGGTCTGTCTTGC 61.590 60.000 0.00 0.00 0.00 4.01
2598 2619 1.162698 CATGGTGGTCTGTCTTGCTG 58.837 55.000 0.00 0.00 0.00 4.41
2609 2630 1.339055 TGTCTTGCTGCCTACCATGTC 60.339 52.381 0.00 0.00 0.00 3.06
2624 2645 2.095768 CCATGTCGGTTGTAAAGTGCAG 60.096 50.000 0.00 0.00 0.00 4.41
2634 2655 1.208293 GTAAAGTGCAGGGGAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
2646 2667 3.521531 GGGGAGAGAGGTTGAAGAAAGAT 59.478 47.826 0.00 0.00 0.00 2.40
2685 2706 7.175816 GCCAACTCATATGAGAGACATAGACTA 59.824 40.741 34.16 0.00 44.74 2.59
2686 2707 9.241919 CCAACTCATATGAGAGACATAGACTAT 57.758 37.037 34.16 8.54 44.74 2.12
2688 2709 8.806429 ACTCATATGAGAGACATAGACTATGG 57.194 38.462 34.16 7.32 44.74 2.74
2689 2710 7.833682 ACTCATATGAGAGACATAGACTATGGG 59.166 40.741 34.16 7.00 44.74 4.00
2709 2730 4.841813 TGGGTAGAAAATCACTAGGACACA 59.158 41.667 0.00 0.00 0.00 3.72
2710 2731 5.176592 GGGTAGAAAATCACTAGGACACAC 58.823 45.833 0.00 0.00 0.00 3.82
2746 2767 2.357952 GTCAGTCAAGACCCAAAACCAC 59.642 50.000 0.00 0.00 32.36 4.16
2747 2768 2.241176 TCAGTCAAGACCCAAAACCACT 59.759 45.455 0.00 0.00 0.00 4.00
2758 2779 2.287547 CCAAAACCACTCCACGTCATTG 60.288 50.000 0.00 0.00 0.00 2.82
2776 2797 4.454504 TCATTGGAGAAACCGCTTTAGTTC 59.545 41.667 0.00 0.00 42.61 3.01
2790 2811 4.695928 GCTTTAGTTCGAAAGAGGGACAAT 59.304 41.667 0.00 0.00 43.69 2.71
2792 2813 6.183360 GCTTTAGTTCGAAAGAGGGACAATAC 60.183 42.308 0.00 0.00 43.69 1.89
2793 2814 6.600882 TTAGTTCGAAAGAGGGACAATACT 57.399 37.500 0.00 0.00 43.69 2.12
2794 2815 5.485209 AGTTCGAAAGAGGGACAATACTT 57.515 39.130 0.00 0.00 43.69 2.24
2795 2816 5.238583 AGTTCGAAAGAGGGACAATACTTG 58.761 41.667 0.00 0.00 43.69 3.16
2796 2817 4.884668 TCGAAAGAGGGACAATACTTGT 57.115 40.909 0.00 0.00 40.60 3.16
2799 2820 5.566826 TCGAAAGAGGGACAATACTTGTCTG 60.567 44.000 16.93 0.00 46.45 3.51
2811 2832 6.183360 ACAATACTTGTCTGGTTTTGGAAGTG 60.183 38.462 0.00 0.00 40.56 3.16
2862 2883 1.067060 AGGGACGAAAAGCAAACAAGC 59.933 47.619 0.00 0.00 0.00 4.01
2978 3005 7.097192 TGTATTCTGAATCTAAAGAAGCGTGT 58.903 34.615 6.10 0.00 35.95 4.49
3056 3083 6.101332 TGCAATTGTAAATGGAATCTTGAGC 58.899 36.000 7.40 0.00 0.00 4.26
3290 3317 2.095059 GCAAGTTGATGTGATGTCCCAC 60.095 50.000 7.16 0.00 37.55 4.61
3358 3385 2.096069 CGAACAATGCAAGTGTCCTCTG 60.096 50.000 6.84 0.00 44.85 3.35
3386 3413 1.740025 CCCCTCGAATCAGCTTCAAAC 59.260 52.381 0.00 0.00 33.10 2.93
3553 3631 7.026562 TGTGATCCAGTTTTAATTAATGTGCG 58.973 34.615 0.00 0.00 0.00 5.34
3591 3669 1.065928 GTCGTCGATCTGGCCGAAT 59.934 57.895 0.00 0.00 37.81 3.34
3627 3705 3.368571 GTGGCCAGCAAGAGCACC 61.369 66.667 5.11 0.00 45.49 5.01
4194 4273 4.141459 TGTGTGTACATAGGGTTTGTGGAA 60.141 41.667 0.00 0.00 0.00 3.53
4195 4274 4.214758 GTGTGTACATAGGGTTTGTGGAAC 59.785 45.833 0.00 0.00 37.53 3.62
4256 4335 6.831868 TGGAAAGAATAGCCCCAAAAGTATAC 59.168 38.462 0.00 0.00 0.00 1.47
4259 4338 7.881775 AAGAATAGCCCCAAAAGTATACAAG 57.118 36.000 5.50 0.00 0.00 3.16
4260 4339 6.365520 AGAATAGCCCCAAAAGTATACAAGG 58.634 40.000 5.50 1.13 0.00 3.61
4264 4343 3.624410 GCCCCAAAAGTATACAAGGTACG 59.376 47.826 5.50 0.00 0.00 3.67
4265 4344 4.835678 CCCCAAAAGTATACAAGGTACGT 58.164 43.478 5.50 0.00 0.00 3.57
4280 4366 6.652062 ACAAGGTACGTAGGGTTTATGAAAAG 59.348 38.462 0.00 0.00 0.00 2.27
4283 4369 5.352293 GGTACGTAGGGTTTATGAAAAGGTG 59.648 44.000 0.00 0.00 0.00 4.00
4286 4372 5.934043 ACGTAGGGTTTATGAAAAGGTGTAC 59.066 40.000 0.00 0.00 0.00 2.90
4288 4374 6.091713 CGTAGGGTTTATGAAAAGGTGTACAG 59.908 42.308 0.00 0.00 0.00 2.74
4293 4402 9.452287 GGGTTTATGAAAAGGTGTACAGTATAA 57.548 33.333 0.00 0.00 0.00 0.98
4353 4462 7.545265 ACACCAATGTAATTATGCAAATGTGAC 59.455 33.333 0.00 0.00 37.26 3.67
4361 4470 1.438651 TGCAAATGTGACTCGCTACC 58.561 50.000 0.00 0.00 0.00 3.18
4368 4477 1.900016 TGACTCGCTACCGGTGTGT 60.900 57.895 19.93 7.66 35.28 3.72
4405 4526 3.616219 AGTTTGTGAGCAAGTGGTGTAA 58.384 40.909 0.00 0.00 35.82 2.41
4407 4528 4.644685 AGTTTGTGAGCAAGTGGTGTAATT 59.355 37.500 0.00 0.00 35.82 1.40
4408 4529 5.825679 AGTTTGTGAGCAAGTGGTGTAATTA 59.174 36.000 0.00 0.00 35.82 1.40
4410 4531 5.682943 TGTGAGCAAGTGGTGTAATTAAC 57.317 39.130 0.00 0.00 0.00 2.01
4411 4532 5.126779 TGTGAGCAAGTGGTGTAATTAACA 58.873 37.500 0.00 0.00 35.06 2.41
4412 4533 5.238432 TGTGAGCAAGTGGTGTAATTAACAG 59.762 40.000 0.00 0.00 39.29 3.16
4413 4534 5.238650 GTGAGCAAGTGGTGTAATTAACAGT 59.761 40.000 0.00 0.00 39.29 3.55
4415 4536 7.119262 GTGAGCAAGTGGTGTAATTAACAGTAT 59.881 37.037 0.00 0.00 39.29 2.12
4416 4537 7.663905 TGAGCAAGTGGTGTAATTAACAGTATT 59.336 33.333 0.00 0.00 39.29 1.89
4417 4538 9.158233 GAGCAAGTGGTGTAATTAACAGTATTA 57.842 33.333 0.00 0.00 39.29 0.98
4445 4567 1.198637 GCTCTGTTGTCCAGCATGAAC 59.801 52.381 0.00 0.00 41.25 3.18
4446 4568 1.808945 CTCTGTTGTCCAGCATGAACC 59.191 52.381 0.00 0.00 41.25 3.62
4448 4570 0.478072 TGTTGTCCAGCATGAACCCT 59.522 50.000 0.00 0.00 39.69 4.34
4449 4571 0.883833 GTTGTCCAGCATGAACCCTG 59.116 55.000 0.00 0.00 39.69 4.45
4451 4573 1.380302 GTCCAGCATGAACCCTGGT 59.620 57.895 14.49 0.00 46.83 4.00
4454 4576 0.327924 CCAGCATGAACCCTGGTACA 59.672 55.000 8.51 0.00 42.87 2.90
4509 4639 2.747460 TTGATCTGGCTGGCGTGC 60.747 61.111 0.00 0.00 0.00 5.34
4539 4674 3.736433 CGTCTGCTCTAGAATTGGTCCTG 60.736 52.174 0.00 0.00 37.12 3.86
4546 4681 5.221283 GCTCTAGAATTGGTCCTGGTAGTAC 60.221 48.000 0.00 0.00 0.00 2.73
4547 4682 6.088541 TCTAGAATTGGTCCTGGTAGTACT 57.911 41.667 0.00 0.00 0.00 2.73
4548 4683 7.217028 TCTAGAATTGGTCCTGGTAGTACTA 57.783 40.000 0.00 0.00 0.00 1.82
4549 4684 7.288560 TCTAGAATTGGTCCTGGTAGTACTAG 58.711 42.308 1.87 6.69 0.00 2.57
4550 4685 5.840081 AGAATTGGTCCTGGTAGTACTAGT 58.160 41.667 12.19 0.00 0.00 2.57
4551 4686 6.978261 AGAATTGGTCCTGGTAGTACTAGTA 58.022 40.000 12.19 0.00 0.00 1.82
4552 4687 7.061688 AGAATTGGTCCTGGTAGTACTAGTAG 58.938 42.308 12.19 4.72 0.00 2.57
4553 4688 6.587560 ATTGGTCCTGGTAGTACTAGTAGA 57.412 41.667 12.19 1.41 0.00 2.59
4554 4689 5.627182 TGGTCCTGGTAGTACTAGTAGAG 57.373 47.826 12.19 0.00 0.00 2.43
4555 4690 5.283763 TGGTCCTGGTAGTACTAGTAGAGA 58.716 45.833 12.19 0.43 0.00 3.10
4556 4691 5.910003 TGGTCCTGGTAGTACTAGTAGAGAT 59.090 44.000 12.19 0.00 0.00 2.75
4557 4692 6.389278 TGGTCCTGGTAGTACTAGTAGAGATT 59.611 42.308 12.19 0.00 0.00 2.40
4558 4693 6.711645 GGTCCTGGTAGTACTAGTAGAGATTG 59.288 46.154 12.19 0.00 0.00 2.67
4559 4694 6.711645 GTCCTGGTAGTACTAGTAGAGATTGG 59.288 46.154 12.19 3.06 0.00 3.16
4560 4695 6.389278 TCCTGGTAGTACTAGTAGAGATTGGT 59.611 42.308 12.19 0.00 0.00 3.67
4561 4696 7.061688 CCTGGTAGTACTAGTAGAGATTGGTT 58.938 42.308 12.19 0.00 0.00 3.67
4562 4697 8.216423 CCTGGTAGTACTAGTAGAGATTGGTTA 58.784 40.741 12.19 0.00 0.00 2.85
4563 4698 9.624373 CTGGTAGTACTAGTAGAGATTGGTTAA 57.376 37.037 1.87 0.00 0.00 2.01
4564 4699 9.401058 TGGTAGTACTAGTAGAGATTGGTTAAC 57.599 37.037 1.87 0.00 0.00 2.01
4565 4700 9.625747 GGTAGTACTAGTAGAGATTGGTTAACT 57.374 37.037 1.87 0.00 0.00 2.24
4568 4703 9.323985 AGTACTAGTAGAGATTGGTTAACTACG 57.676 37.037 1.87 0.00 38.55 3.51
4569 4704 9.319143 GTACTAGTAGAGATTGGTTAACTACGA 57.681 37.037 1.87 0.00 38.55 3.43
4570 4705 8.436046 ACTAGTAGAGATTGGTTAACTACGAG 57.564 38.462 3.59 0.00 40.17 4.18
4571 4706 6.696441 AGTAGAGATTGGTTAACTACGAGG 57.304 41.667 5.42 0.00 38.55 4.63
4572 4707 6.186234 AGTAGAGATTGGTTAACTACGAGGT 58.814 40.000 5.42 0.00 38.55 3.85
4573 4708 5.997384 AGAGATTGGTTAACTACGAGGTT 57.003 39.130 5.42 0.00 0.00 3.50
4574 4709 6.356186 AGAGATTGGTTAACTACGAGGTTT 57.644 37.500 5.42 0.00 0.00 3.27
4575 4710 6.164176 AGAGATTGGTTAACTACGAGGTTTG 58.836 40.000 5.42 0.00 0.00 2.93
4576 4711 4.694037 AGATTGGTTAACTACGAGGTTTGC 59.306 41.667 5.42 0.00 0.00 3.68
4577 4712 3.756933 TGGTTAACTACGAGGTTTGCT 57.243 42.857 5.42 0.00 0.00 3.91
4578 4713 3.395639 TGGTTAACTACGAGGTTTGCTG 58.604 45.455 5.42 0.00 0.00 4.41
4579 4714 3.069872 TGGTTAACTACGAGGTTTGCTGA 59.930 43.478 5.42 0.00 0.00 4.26
4580 4715 4.251268 GGTTAACTACGAGGTTTGCTGAT 58.749 43.478 5.42 0.00 0.00 2.90
4581 4716 5.047164 TGGTTAACTACGAGGTTTGCTGATA 60.047 40.000 5.42 0.00 0.00 2.15
4582 4717 5.519206 GGTTAACTACGAGGTTTGCTGATAG 59.481 44.000 5.42 0.00 0.00 2.08
4583 4718 3.802948 ACTACGAGGTTTGCTGATAGG 57.197 47.619 0.00 0.00 0.00 2.57
4584 4719 3.097614 ACTACGAGGTTTGCTGATAGGT 58.902 45.455 0.00 0.00 0.00 3.08
4585 4720 3.514309 ACTACGAGGTTTGCTGATAGGTT 59.486 43.478 0.00 0.00 0.00 3.50
4586 4721 4.708421 ACTACGAGGTTTGCTGATAGGTTA 59.292 41.667 0.00 0.00 0.00 2.85
4587 4722 3.858247 ACGAGGTTTGCTGATAGGTTAC 58.142 45.455 0.00 0.00 0.00 2.50
4588 4723 2.858344 CGAGGTTTGCTGATAGGTTACG 59.142 50.000 0.00 0.00 0.00 3.18
4589 4724 3.195661 GAGGTTTGCTGATAGGTTACGG 58.804 50.000 0.00 0.00 0.00 4.02
4590 4725 2.835764 AGGTTTGCTGATAGGTTACGGA 59.164 45.455 0.00 0.00 0.00 4.69
4591 4726 3.454812 AGGTTTGCTGATAGGTTACGGAT 59.545 43.478 0.00 0.00 0.00 4.18
4592 4727 3.560068 GGTTTGCTGATAGGTTACGGATG 59.440 47.826 0.00 0.00 0.00 3.51
4593 4728 4.439057 GTTTGCTGATAGGTTACGGATGA 58.561 43.478 0.00 0.00 0.00 2.92
4594 4729 4.955811 TTGCTGATAGGTTACGGATGAT 57.044 40.909 0.00 0.00 0.00 2.45
4595 4730 4.257267 TGCTGATAGGTTACGGATGATG 57.743 45.455 0.00 0.00 0.00 3.07
4596 4731 3.895041 TGCTGATAGGTTACGGATGATGA 59.105 43.478 0.00 0.00 0.00 2.92
4597 4732 4.021981 TGCTGATAGGTTACGGATGATGAG 60.022 45.833 0.00 0.00 0.00 2.90
4598 4733 4.021894 GCTGATAGGTTACGGATGATGAGT 60.022 45.833 0.00 0.00 0.00 3.41
4599 4734 5.509840 GCTGATAGGTTACGGATGATGAGTT 60.510 44.000 0.00 0.00 0.00 3.01
4600 4735 6.294564 GCTGATAGGTTACGGATGATGAGTTA 60.295 42.308 0.00 0.00 0.00 2.24
4601 4736 7.215719 TGATAGGTTACGGATGATGAGTTAG 57.784 40.000 0.00 0.00 0.00 2.34
4602 4737 7.002276 TGATAGGTTACGGATGATGAGTTAGA 58.998 38.462 0.00 0.00 0.00 2.10
4603 4738 5.517322 AGGTTACGGATGATGAGTTAGAC 57.483 43.478 0.00 0.00 0.00 2.59
4604 4739 5.202004 AGGTTACGGATGATGAGTTAGACT 58.798 41.667 0.00 0.00 0.00 3.24
4605 4740 5.657302 AGGTTACGGATGATGAGTTAGACTT 59.343 40.000 0.00 0.00 0.00 3.01
4606 4741 5.749109 GGTTACGGATGATGAGTTAGACTTG 59.251 44.000 0.00 0.00 0.00 3.16
4607 4742 4.392921 ACGGATGATGAGTTAGACTTGG 57.607 45.455 0.00 0.00 0.00 3.61
4633 4768 2.184579 GCGGTAGGTCTGGTCTGC 59.815 66.667 0.00 0.00 0.00 4.26
4634 4769 2.646175 GCGGTAGGTCTGGTCTGCA 61.646 63.158 0.00 0.00 33.09 4.41
4635 4770 1.513158 CGGTAGGTCTGGTCTGCAG 59.487 63.158 7.63 7.63 0.00 4.41
4636 4771 1.901085 GGTAGGTCTGGTCTGCAGG 59.099 63.158 15.13 0.00 0.00 4.85
4637 4772 0.905337 GGTAGGTCTGGTCTGCAGGT 60.905 60.000 15.13 0.00 0.00 4.00
4638 4773 0.533032 GTAGGTCTGGTCTGCAGGTC 59.467 60.000 15.13 7.56 0.00 3.85
4639 4774 0.409876 TAGGTCTGGTCTGCAGGTCT 59.590 55.000 15.13 4.06 0.00 3.85
4640 4775 1.190833 AGGTCTGGTCTGCAGGTCTG 61.191 60.000 15.13 10.34 0.00 3.51
4682 4817 5.616270 TGGATTACACAGCTTGACTTTGTA 58.384 37.500 3.37 0.00 39.91 2.41
4683 4818 5.468746 TGGATTACACAGCTTGACTTTGTAC 59.531 40.000 3.37 0.00 40.42 2.90
4684 4819 5.106673 GGATTACACAGCTTGACTTTGTACC 60.107 44.000 3.37 0.00 40.42 3.34
4685 4820 3.275617 ACACAGCTTGACTTTGTACCA 57.724 42.857 3.37 0.00 37.53 3.25
4686 4821 2.943033 ACACAGCTTGACTTTGTACCAC 59.057 45.455 3.37 0.00 37.53 4.16
4687 4822 2.942376 CACAGCTTGACTTTGTACCACA 59.058 45.455 0.00 0.00 0.00 4.17
4688 4823 3.565482 CACAGCTTGACTTTGTACCACAT 59.435 43.478 0.00 0.00 0.00 3.21
4689 4824 4.036734 CACAGCTTGACTTTGTACCACATT 59.963 41.667 0.00 0.00 0.00 2.71
4690 4825 4.036734 ACAGCTTGACTTTGTACCACATTG 59.963 41.667 0.00 0.00 0.00 2.82
4691 4826 4.275689 CAGCTTGACTTTGTACCACATTGA 59.724 41.667 0.00 0.00 0.00 2.57
4692 4827 4.887071 AGCTTGACTTTGTACCACATTGAA 59.113 37.500 0.00 0.00 0.00 2.69
4693 4828 5.009010 AGCTTGACTTTGTACCACATTGAAG 59.991 40.000 0.00 0.00 0.00 3.02
4694 4829 5.008613 GCTTGACTTTGTACCACATTGAAGA 59.991 40.000 0.00 0.00 0.00 2.87
4695 4830 6.618287 TTGACTTTGTACCACATTGAAGAG 57.382 37.500 0.00 0.00 0.00 2.85
4696 4831 5.680619 TGACTTTGTACCACATTGAAGAGT 58.319 37.500 0.00 0.00 0.00 3.24
4697 4832 6.822442 TGACTTTGTACCACATTGAAGAGTA 58.178 36.000 0.00 0.00 0.00 2.59
4698 4833 6.704493 TGACTTTGTACCACATTGAAGAGTAC 59.296 38.462 0.00 0.00 35.08 2.73
4699 4834 5.694910 ACTTTGTACCACATTGAAGAGTACG 59.305 40.000 0.00 0.00 36.85 3.67
4700 4835 3.581755 TGTACCACATTGAAGAGTACGC 58.418 45.455 0.00 0.00 36.85 4.42
4701 4836 2.094762 ACCACATTGAAGAGTACGCC 57.905 50.000 0.00 0.00 0.00 5.68
4702 4837 1.346395 ACCACATTGAAGAGTACGCCA 59.654 47.619 0.00 0.00 0.00 5.69
4703 4838 2.224426 ACCACATTGAAGAGTACGCCAA 60.224 45.455 0.00 0.00 0.00 4.52
4704 4839 3.009723 CCACATTGAAGAGTACGCCAAT 58.990 45.455 0.00 0.00 0.00 3.16
4705 4840 3.181507 CCACATTGAAGAGTACGCCAATG 60.182 47.826 19.46 19.46 46.61 2.82
4706 4841 3.009723 ACATTGAAGAGTACGCCAATGG 58.990 45.455 22.59 0.00 45.92 3.16
4707 4842 2.851263 TTGAAGAGTACGCCAATGGT 57.149 45.000 0.00 0.00 0.00 3.55
4708 4843 2.093306 TGAAGAGTACGCCAATGGTG 57.907 50.000 11.86 11.86 39.41 4.17
4710 4845 2.563620 TGAAGAGTACGCCAATGGTGTA 59.436 45.455 20.61 20.61 45.32 2.90
4729 4864 8.685838 TGGTGTACCATATTTTTATAGAAGGC 57.314 34.615 0.00 0.00 42.01 4.35
4747 4882 3.395639 AGGCAGCACATTGACAAAATTG 58.604 40.909 0.00 0.00 0.00 2.32
4759 4894 5.261209 TGACAAAATTGGAGTTGTTCCTG 57.739 39.130 0.00 0.00 46.92 3.86
4760 4895 4.709397 TGACAAAATTGGAGTTGTTCCTGT 59.291 37.500 0.00 0.00 46.92 4.00
4761 4896 5.186797 TGACAAAATTGGAGTTGTTCCTGTT 59.813 36.000 0.00 0.00 46.92 3.16
4762 4897 5.418676 ACAAAATTGGAGTTGTTCCTGTTG 58.581 37.500 0.00 0.00 46.92 3.33
4784 5153 3.938963 GGAAGAAATCAAGTCGCCATGTA 59.061 43.478 0.00 0.00 0.00 2.29
4786 5155 5.066505 GGAAGAAATCAAGTCGCCATGTATT 59.933 40.000 0.00 0.00 0.00 1.89
4789 5158 6.324819 AGAAATCAAGTCGCCATGTATTTTG 58.675 36.000 0.00 0.00 0.00 2.44
4821 5195 1.540267 TCTGGTGTGTACGAGAAGAGC 59.460 52.381 0.00 0.00 38.49 4.09
4897 5279 1.971357 AGACAGATGGAAGGAACGTGT 59.029 47.619 0.00 0.00 0.00 4.49
4898 5280 2.069273 GACAGATGGAAGGAACGTGTG 58.931 52.381 0.00 0.00 0.00 3.82
4899 5281 1.691976 ACAGATGGAAGGAACGTGTGA 59.308 47.619 0.00 0.00 0.00 3.58
4900 5282 2.104111 ACAGATGGAAGGAACGTGTGAA 59.896 45.455 0.00 0.00 0.00 3.18
4901 5283 2.738846 CAGATGGAAGGAACGTGTGAAG 59.261 50.000 0.00 0.00 0.00 3.02
4902 5284 2.632996 AGATGGAAGGAACGTGTGAAGA 59.367 45.455 0.00 0.00 0.00 2.87
4903 5285 2.992124 TGGAAGGAACGTGTGAAGAA 57.008 45.000 0.00 0.00 0.00 2.52
4904 5286 2.833794 TGGAAGGAACGTGTGAAGAAG 58.166 47.619 0.00 0.00 0.00 2.85
4905 5287 2.432874 TGGAAGGAACGTGTGAAGAAGA 59.567 45.455 0.00 0.00 0.00 2.87
4906 5288 3.118555 TGGAAGGAACGTGTGAAGAAGAA 60.119 43.478 0.00 0.00 0.00 2.52
4907 5289 3.495001 GGAAGGAACGTGTGAAGAAGAAG 59.505 47.826 0.00 0.00 0.00 2.85
4908 5290 4.369182 GAAGGAACGTGTGAAGAAGAAGA 58.631 43.478 0.00 0.00 0.00 2.87
4909 5291 4.402056 AGGAACGTGTGAAGAAGAAGAA 57.598 40.909 0.00 0.00 0.00 2.52
4910 5292 4.372656 AGGAACGTGTGAAGAAGAAGAAG 58.627 43.478 0.00 0.00 0.00 2.85
4911 5293 4.099573 AGGAACGTGTGAAGAAGAAGAAGA 59.900 41.667 0.00 0.00 0.00 2.87
4912 5294 4.809426 GGAACGTGTGAAGAAGAAGAAGAA 59.191 41.667 0.00 0.00 0.00 2.52
4916 5298 5.751028 ACGTGTGAAGAAGAAGAAGAAGAAG 59.249 40.000 0.00 0.00 0.00 2.85
4925 5307 4.555262 AGAAGAAGAAGAAGAAGAGCACG 58.445 43.478 0.00 0.00 0.00 5.34
4957 5339 1.765727 GGTTTCCGTTCCCTTCCCT 59.234 57.895 0.00 0.00 0.00 4.20
4961 5343 0.690762 TTCCGTTCCCTTCCCTTGAG 59.309 55.000 0.00 0.00 0.00 3.02
4968 5350 2.701551 TCCCTTCCCTTGAGAACTGAA 58.298 47.619 0.00 0.00 0.00 3.02
4969 5351 2.372172 TCCCTTCCCTTGAGAACTGAAC 59.628 50.000 0.00 0.00 0.00 3.18
4970 5352 2.373502 CCCTTCCCTTGAGAACTGAACT 59.626 50.000 0.00 0.00 0.00 3.01
4971 5353 3.406764 CCTTCCCTTGAGAACTGAACTG 58.593 50.000 0.00 0.00 0.00 3.16
4972 5354 3.071602 CCTTCCCTTGAGAACTGAACTGA 59.928 47.826 0.00 0.00 0.00 3.41
4973 5355 3.753294 TCCCTTGAGAACTGAACTGAC 57.247 47.619 0.00 0.00 0.00 3.51
4974 5356 3.038280 TCCCTTGAGAACTGAACTGACA 58.962 45.455 0.00 0.00 0.00 3.58
4975 5357 3.134458 CCCTTGAGAACTGAACTGACAC 58.866 50.000 0.00 0.00 0.00 3.67
5014 5396 4.779733 AGAGATCGTGGGCGGGGT 62.780 66.667 0.00 0.00 38.89 4.95
5018 5400 4.404098 ATCGTGGGCGGGGTTGAC 62.404 66.667 0.00 0.00 38.89 3.18
5072 5461 1.674057 CTGGGAGGACAGACACACC 59.326 63.158 0.00 0.00 40.97 4.16
5078 5467 2.027024 GACAGACACACCGACGCA 59.973 61.111 0.00 0.00 0.00 5.24
5115 5515 8.385898 TGAACGGTTGATTATTTCAGTTTAGT 57.614 30.769 0.00 0.00 35.27 2.24
5116 5516 9.491675 TGAACGGTTGATTATTTCAGTTTAGTA 57.508 29.630 0.00 0.00 35.27 1.82
5117 5517 9.750882 GAACGGTTGATTATTTCAGTTTAGTAC 57.249 33.333 0.00 0.00 35.27 2.73
5118 5518 9.498176 AACGGTTGATTATTTCAGTTTAGTACT 57.502 29.630 0.00 0.00 35.27 2.73
5122 5522 9.897349 GTTGATTATTTCAGTTTAGTACTACGC 57.103 33.333 0.91 0.00 34.56 4.42
5123 5523 8.638685 TGATTATTTCAGTTTAGTACTACGCC 57.361 34.615 0.91 0.00 34.56 5.68
5124 5524 7.433131 TGATTATTTCAGTTTAGTACTACGCCG 59.567 37.037 0.91 0.00 34.56 6.46
5125 5525 2.549633 TCAGTTTAGTACTACGCCGC 57.450 50.000 0.91 0.00 34.56 6.53
5126 5526 1.186030 CAGTTTAGTACTACGCCGCG 58.814 55.000 12.14 12.14 34.56 6.46
5127 5527 0.804989 AGTTTAGTACTACGCCGCGT 59.195 50.000 23.72 23.72 44.35 6.01
5128 5528 1.183511 GTTTAGTACTACGCCGCGTC 58.816 55.000 23.94 8.05 41.54 5.19
5129 5529 0.247655 TTTAGTACTACGCCGCGTCG 60.248 55.000 23.94 19.09 41.54 5.12
5130 5530 1.081556 TTAGTACTACGCCGCGTCGA 61.082 55.000 23.94 4.74 41.54 4.20
5131 5531 0.875908 TAGTACTACGCCGCGTCGAT 60.876 55.000 23.94 11.52 41.54 3.59
5132 5532 1.720448 GTACTACGCCGCGTCGATC 60.720 63.158 23.94 10.70 41.54 3.69
5133 5533 2.173020 TACTACGCCGCGTCGATCA 61.173 57.895 23.94 3.04 41.54 2.92
5134 5534 2.365444 TACTACGCCGCGTCGATCAC 62.365 60.000 23.94 0.00 41.54 3.06
5135 5535 4.541482 TACGCCGCGTCGATCACC 62.541 66.667 23.94 0.00 41.54 4.02
5138 5538 2.890474 GCCGCGTCGATCACCAAT 60.890 61.111 4.92 0.00 0.00 3.16
5139 5539 2.871427 GCCGCGTCGATCACCAATC 61.871 63.158 4.92 0.00 0.00 2.67
5146 5546 4.033894 GATCACCAATCGCCTCCG 57.966 61.111 0.00 0.00 0.00 4.63
5147 5547 1.144057 GATCACCAATCGCCTCCGT 59.856 57.895 0.00 0.00 35.54 4.69
5148 5548 0.462047 GATCACCAATCGCCTCCGTT 60.462 55.000 0.00 0.00 35.54 4.44
5149 5549 0.828022 ATCACCAATCGCCTCCGTTA 59.172 50.000 0.00 0.00 35.54 3.18
5150 5550 0.828022 TCACCAATCGCCTCCGTTAT 59.172 50.000 0.00 0.00 35.54 1.89
5151 5551 1.208535 TCACCAATCGCCTCCGTTATT 59.791 47.619 0.00 0.00 35.54 1.40
5152 5552 2.014128 CACCAATCGCCTCCGTTATTT 58.986 47.619 0.00 0.00 35.54 1.40
5153 5553 2.422127 CACCAATCGCCTCCGTTATTTT 59.578 45.455 0.00 0.00 35.54 1.82
5154 5554 3.086282 ACCAATCGCCTCCGTTATTTTT 58.914 40.909 0.00 0.00 35.54 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.763204 GTGTTTCATGTCTTCTAAACCCTGA 59.237 40.000 0.00 0.00 32.18 3.86
28 29 5.334105 CGTGTTTCATGTCTTCTAAACCCTG 60.334 44.000 0.00 0.00 32.18 4.45
148 149 1.207329 GAAGATACTCCAACACCGCCT 59.793 52.381 0.00 0.00 0.00 5.52
149 150 1.207329 AGAAGATACTCCAACACCGCC 59.793 52.381 0.00 0.00 0.00 6.13
182 183 6.379988 GGAACCCCATAATACACAAATCTTGT 59.620 38.462 0.00 0.00 46.75 3.16
254 255 9.985730 TCATTTTGCATAAATTTCTGTCTTTCT 57.014 25.926 0.00 0.00 0.00 2.52
269 270 9.304731 GCATTCTGAGTTAATTCATTTTGCATA 57.695 29.630 16.95 0.00 31.09 3.14
275 276 9.582431 CAAGATGCATTCTGAGTTAATTCATTT 57.418 29.630 0.00 0.00 33.93 2.32
278 279 6.885918 TCCAAGATGCATTCTGAGTTAATTCA 59.114 34.615 0.00 0.34 33.93 2.57
300 301 5.305585 GGCTATAATCCTCGTTGAAATCCA 58.694 41.667 0.00 0.00 0.00 3.41
301 302 4.695928 GGGCTATAATCCTCGTTGAAATCC 59.304 45.833 0.00 0.00 0.00 3.01
312 313 3.933239 AGACCTGAGGGCTATAATCCT 57.067 47.619 4.15 0.00 35.63 3.24
368 369 3.769300 GGGCAATACCAACCATCTCTTTT 59.231 43.478 0.00 0.00 42.05 2.27
375 376 1.308877 AGGAGGGCAATACCAACCAT 58.691 50.000 0.00 0.00 42.05 3.55
376 377 1.843851 CTAGGAGGGCAATACCAACCA 59.156 52.381 0.00 0.00 42.05 3.67
461 464 1.000607 CTTTGTCGTCTCTCGGAACCA 60.001 52.381 0.00 0.00 40.32 3.67
467 470 1.811359 ACCTACCTTTGTCGTCTCTCG 59.189 52.381 0.00 0.00 41.41 4.04
642 645 2.344203 CGCCGACTGTCCTCCTTCT 61.344 63.158 1.55 0.00 0.00 2.85
666 671 0.390078 CATCCAAAATTGCTGCCGCA 60.390 50.000 0.00 0.00 46.24 5.69
751 759 8.972127 AGCTATTCTAGTGAGTTCATGAGTTAA 58.028 33.333 0.00 0.00 0.00 2.01
754 762 7.996066 TCTAGCTATTCTAGTGAGTTCATGAGT 59.004 37.037 0.00 0.00 44.10 3.41
806 814 6.530181 CGTTACAATTTCATTTAAAGGCTCCC 59.470 38.462 0.00 0.00 0.00 4.30
830 838 4.862574 TCAGTAAATTGTTCGTGAGGATCG 59.137 41.667 0.00 0.00 38.61 3.69
1107 1122 1.014564 CGAGCTTGAAAGGGTCGGAC 61.015 60.000 0.00 0.00 46.49 4.79
1145 1160 1.116308 GAGTGGTAGGAAGGAGGAGC 58.884 60.000 0.00 0.00 0.00 4.70
1185 1204 0.254747 TTGGATTTGGGGGCGTAGAG 59.745 55.000 0.00 0.00 0.00 2.43
1188 1207 0.699399 TTCTTGGATTTGGGGGCGTA 59.301 50.000 0.00 0.00 0.00 4.42
1196 1215 5.565259 CGAATTCACGAGTTTCTTGGATTTG 59.435 40.000 6.22 0.00 25.62 2.32
1205 1224 2.322161 TCGGTCGAATTCACGAGTTTC 58.678 47.619 6.22 0.00 42.88 2.78
1292 1312 1.427753 TCTCCACTGACAGGTACCTGA 59.572 52.381 41.87 23.49 46.30 3.86
1305 1325 1.254284 CCGACCTGCTCTTCTCCACT 61.254 60.000 0.00 0.00 0.00 4.00
1465 1485 6.513806 TCATTTACCAATTGGAGATGTGTG 57.486 37.500 31.22 17.45 38.94 3.82
1512 1532 3.490439 AATGCGATGACCACATGGATA 57.510 42.857 4.53 0.00 36.82 2.59
1524 1544 9.651718 GAAAGGAGTAGTAAATAAAATGCGATG 57.348 33.333 0.00 0.00 0.00 3.84
1527 1547 7.681903 ACGAAAGGAGTAGTAAATAAAATGCG 58.318 34.615 0.00 0.00 0.00 4.73
1567 1587 6.270064 AGTTCCAATTTGAAGTAAAACCACG 58.730 36.000 0.00 0.00 0.00 4.94
1568 1588 9.589111 TTTAGTTCCAATTTGAAGTAAAACCAC 57.411 29.630 21.33 0.00 42.67 4.16
1573 1593 9.589111 GTGGTTTTAGTTCCAATTTGAAGTAAA 57.411 29.630 20.38 20.38 43.35 2.01
1574 1594 7.916450 CGTGGTTTTAGTTCCAATTTGAAGTAA 59.084 33.333 13.05 13.05 38.01 2.24
1575 1595 7.282675 TCGTGGTTTTAGTTCCAATTTGAAGTA 59.717 33.333 3.32 3.32 35.38 2.24
1576 1596 6.095720 TCGTGGTTTTAGTTCCAATTTGAAGT 59.904 34.615 5.09 5.09 35.38 3.01
1577 1597 6.416750 GTCGTGGTTTTAGTTCCAATTTGAAG 59.583 38.462 0.00 0.00 35.38 3.02
1578 1598 6.127703 TGTCGTGGTTTTAGTTCCAATTTGAA 60.128 34.615 0.00 0.00 35.38 2.69
1579 1599 5.357314 TGTCGTGGTTTTAGTTCCAATTTGA 59.643 36.000 0.00 0.00 35.38 2.69
1580 1600 5.583495 TGTCGTGGTTTTAGTTCCAATTTG 58.417 37.500 0.00 0.00 35.38 2.32
1586 1606 5.684550 ATTCTTGTCGTGGTTTTAGTTCC 57.315 39.130 0.00 0.00 0.00 3.62
1622 1642 6.645306 TCATTTACCGATTGGAGATGTGTAA 58.355 36.000 5.81 0.00 39.21 2.41
1650 1670 2.517959 TGCTAGAAATGCACCAAAGCT 58.482 42.857 10.18 0.00 35.31 3.74
1700 1720 5.969423 ACGAATTATGGAACGAAAGGAGTA 58.031 37.500 0.00 0.00 0.00 2.59
1722 1742 5.352293 CCCTCCGTAACTAAAACCACAATAC 59.648 44.000 0.00 0.00 0.00 1.89
1726 1746 2.971330 TCCCTCCGTAACTAAAACCACA 59.029 45.455 0.00 0.00 0.00 4.17
1785 1805 5.221185 GCCTAATACGAGTAGTTGGTGATCA 60.221 44.000 11.41 0.00 30.76 2.92
1801 1821 5.927115 GGCACTCACTGTATTAGCCTAATAC 59.073 44.000 22.27 22.27 46.69 1.89
1802 1822 6.097915 GGCACTCACTGTATTAGCCTAATA 57.902 41.667 0.00 0.00 37.67 0.98
1803 1823 4.962155 GGCACTCACTGTATTAGCCTAAT 58.038 43.478 2.01 2.01 37.67 1.73
1846 1866 0.521867 CATGCGTTCACATTGGAGCG 60.522 55.000 6.90 6.90 43.21 5.03
1869 1889 2.092753 ACGGTTGGCATCAAGATGATCT 60.093 45.455 13.93 0.00 41.20 2.75
2073 2093 1.342374 GCTTTGATTGGGGACAGGGAT 60.342 52.381 0.00 0.00 44.54 3.85
2222 2242 2.596338 TCGGTGGCTGTGACGAGA 60.596 61.111 0.00 0.00 0.00 4.04
2293 2313 0.108186 TGCACAAGAGCGGTGATAGG 60.108 55.000 0.00 0.00 38.54 2.57
2433 2454 2.046217 GCACGGGGAGAGAAACCC 60.046 66.667 0.00 0.00 46.05 4.11
2438 2459 2.291043 GGGAAAGCACGGGGAGAGA 61.291 63.158 0.00 0.00 0.00 3.10
2456 2477 2.073816 ACAACAGCGAAACCGGAATAG 58.926 47.619 9.46 0.00 0.00 1.73
2461 2482 2.482721 AGAAATACAACAGCGAAACCGG 59.517 45.455 0.00 0.00 0.00 5.28
2493 2514 2.255554 GTGTGCTCGAGCTCGACA 59.744 61.111 33.84 29.52 44.22 4.35
2494 2515 2.505118 GGTGTGCTCGAGCTCGAC 60.505 66.667 33.84 27.54 44.22 4.20
2497 2518 2.433318 GGTGGTGTGCTCGAGCTC 60.433 66.667 35.27 31.49 42.66 4.09
2539 2560 2.456627 AGGAGCTCAACCTCTTGCA 58.543 52.632 17.19 0.00 31.43 4.08
2546 2567 1.298014 CCACAGGAGGAGCTCAACC 59.702 63.158 17.19 17.19 31.08 3.77
2547 2568 1.194781 TCCCACAGGAGGAGCTCAAC 61.195 60.000 17.19 8.43 37.19 3.18
2567 2588 2.287117 ACCATGCCTCATCCCCCA 60.287 61.111 0.00 0.00 0.00 4.96
2574 2595 0.837691 AGACAGACCACCATGCCTCA 60.838 55.000 0.00 0.00 0.00 3.86
2583 2604 0.321671 TAGGCAGCAAGACAGACCAC 59.678 55.000 0.00 0.00 0.00 4.16
2609 2630 0.250553 TCCCCTGCACTTTACAACCG 60.251 55.000 0.00 0.00 0.00 4.44
2616 2637 0.474660 ACCTCTCTCCCCTGCACTTT 60.475 55.000 0.00 0.00 0.00 2.66
2624 2645 2.907042 TCTTTCTTCAACCTCTCTCCCC 59.093 50.000 0.00 0.00 0.00 4.81
2646 2667 3.172106 TTGGCCCCACGTGGAAGA 61.172 61.111 36.07 13.51 37.39 2.87
2653 2674 0.180171 TCATATGAGTTGGCCCCACG 59.820 55.000 0.00 0.00 0.00 4.94
2685 2706 5.487488 TGTGTCCTAGTGATTTTCTACCCAT 59.513 40.000 0.00 0.00 0.00 4.00
2686 2707 4.841813 TGTGTCCTAGTGATTTTCTACCCA 59.158 41.667 0.00 0.00 0.00 4.51
2687 2708 5.176592 GTGTGTCCTAGTGATTTTCTACCC 58.823 45.833 0.00 0.00 0.00 3.69
2688 2709 5.176592 GGTGTGTCCTAGTGATTTTCTACC 58.823 45.833 0.00 0.00 0.00 3.18
2689 2710 5.790593 TGGTGTGTCCTAGTGATTTTCTAC 58.209 41.667 0.00 0.00 37.07 2.59
2709 2730 2.634940 ACTGACACTTGTCTATGCTGGT 59.365 45.455 10.63 0.00 44.99 4.00
2710 2731 3.257393 GACTGACACTTGTCTATGCTGG 58.743 50.000 10.63 0.00 44.99 4.85
2736 2757 0.464735 TGACGTGGAGTGGTTTTGGG 60.465 55.000 0.00 0.00 0.00 4.12
2747 2768 1.606994 CGGTTTCTCCAATGACGTGGA 60.607 52.381 0.00 0.00 45.72 4.02
2758 2779 2.680577 TCGAACTAAAGCGGTTTCTCC 58.319 47.619 17.03 4.00 0.00 3.71
2790 2811 3.630312 GCACTTCCAAAACCAGACAAGTA 59.370 43.478 0.00 0.00 0.00 2.24
2792 2813 2.426738 TGCACTTCCAAAACCAGACAAG 59.573 45.455 0.00 0.00 0.00 3.16
2793 2814 2.451490 TGCACTTCCAAAACCAGACAA 58.549 42.857 0.00 0.00 0.00 3.18
2794 2815 2.136298 TGCACTTCCAAAACCAGACA 57.864 45.000 0.00 0.00 0.00 3.41
2795 2816 2.223805 CCTTGCACTTCCAAAACCAGAC 60.224 50.000 0.00 0.00 0.00 3.51
2796 2817 2.031120 CCTTGCACTTCCAAAACCAGA 58.969 47.619 0.00 0.00 0.00 3.86
2799 2820 1.806247 GCACCTTGCACTTCCAAAACC 60.806 52.381 0.00 0.00 44.26 3.27
2811 2832 0.524862 CCAGACATTCTGCACCTTGC 59.475 55.000 0.00 0.00 42.98 4.01
2827 2848 2.353803 CGTCCCTCAACTCCTAAACCAG 60.354 54.545 0.00 0.00 0.00 4.00
2862 2883 3.502123 TTTGGTCCCTCAACTAACCAG 57.498 47.619 0.00 0.00 42.43 4.00
2978 3005 7.565680 CCCTAGTTTGAGCTTCTCCTTATTTA 58.434 38.462 0.00 0.00 0.00 1.40
3056 3083 1.530293 GAGATTATCGCCAAGCAGCTG 59.470 52.381 10.11 10.11 0.00 4.24
3097 3124 7.383687 ACAGATGAGCAATCAAATGTTCATTT 58.616 30.769 7.83 5.12 46.87 2.32
3098 3125 6.931838 ACAGATGAGCAATCAAATGTTCATT 58.068 32.000 7.83 0.00 46.87 2.57
3209 3236 8.283992 TCGAAAACTATCACAAAGCGATAAAAA 58.716 29.630 0.00 0.00 0.00 1.94
3290 3317 0.246989 CGTCAATCGTAAAACGCCCG 60.247 55.000 0.00 0.00 42.21 6.13
3358 3385 2.633488 CTGATTCGAGGGGAAAAGGAC 58.367 52.381 0.00 0.00 38.36 3.85
3386 3413 4.267349 TCCTACAAAGAAGAAGGAACCG 57.733 45.455 0.00 0.00 35.20 4.44
3553 3631 0.741221 GACGATTCAGTGCCCTGTCC 60.741 60.000 0.00 0.00 39.82 4.02
3573 3651 1.065928 ATTCGGCCAGATCGACGAC 59.934 57.895 2.24 0.00 36.30 4.34
3591 3669 2.036098 CCCTGCACCATGCCTTCA 59.964 61.111 0.00 0.00 44.23 3.02
4194 4273 4.453480 TCTTCCCTTTGATCTTTGTGGT 57.547 40.909 0.00 0.00 0.00 4.16
4195 4274 4.321527 GCTTCTTCCCTTTGATCTTTGTGG 60.322 45.833 0.00 0.00 0.00 4.17
4196 4275 4.522022 AGCTTCTTCCCTTTGATCTTTGTG 59.478 41.667 0.00 0.00 0.00 3.33
4197 4276 4.734266 AGCTTCTTCCCTTTGATCTTTGT 58.266 39.130 0.00 0.00 0.00 2.83
4198 4277 5.942826 AGTAGCTTCTTCCCTTTGATCTTTG 59.057 40.000 0.00 0.00 0.00 2.77
4199 4278 5.942826 CAGTAGCTTCTTCCCTTTGATCTTT 59.057 40.000 0.00 0.00 0.00 2.52
4256 4335 6.093082 CCTTTTCATAAACCCTACGTACCTTG 59.907 42.308 0.00 0.00 0.00 3.61
4259 4338 5.352293 CACCTTTTCATAAACCCTACGTACC 59.648 44.000 0.00 0.00 0.00 3.34
4260 4339 5.934043 ACACCTTTTCATAAACCCTACGTAC 59.066 40.000 0.00 0.00 0.00 3.67
4264 4343 6.938596 ACTGTACACCTTTTCATAAACCCTAC 59.061 38.462 0.00 0.00 0.00 3.18
4265 4344 7.081857 ACTGTACACCTTTTCATAAACCCTA 57.918 36.000 0.00 0.00 0.00 3.53
4293 4402 8.600625 CAGTTTGCACTATGTATGTACGTATTT 58.399 33.333 0.00 0.00 0.00 1.40
4299 4408 7.827819 TTCTCAGTTTGCACTATGTATGTAC 57.172 36.000 0.00 0.00 0.00 2.90
4306 4415 7.023575 GGTGTAAATTCTCAGTTTGCACTATG 58.976 38.462 15.64 0.00 45.44 2.23
4307 4416 6.714810 TGGTGTAAATTCTCAGTTTGCACTAT 59.285 34.615 15.64 0.00 45.44 2.12
4308 4417 6.058833 TGGTGTAAATTCTCAGTTTGCACTA 58.941 36.000 15.64 9.67 45.44 2.74
4309 4418 4.887071 TGGTGTAAATTCTCAGTTTGCACT 59.113 37.500 15.64 0.00 45.44 4.40
4310 4419 5.181690 TGGTGTAAATTCTCAGTTTGCAC 57.818 39.130 10.11 10.11 45.42 4.57
4312 4421 6.215845 ACATTGGTGTAAATTCTCAGTTTGC 58.784 36.000 0.00 0.00 36.63 3.68
4353 4462 2.809601 GCACACACCGGTAGCGAG 60.810 66.667 17.33 10.45 0.00 5.03
4368 4477 0.470766 AACTTCTTACACACCCGGCA 59.529 50.000 0.00 0.00 0.00 5.69
4407 4528 9.378551 CAACAGAGCAAAGGTATAATACTGTTA 57.621 33.333 0.00 0.00 41.76 2.41
4408 4529 7.883311 ACAACAGAGCAAAGGTATAATACTGTT 59.117 33.333 0.00 0.00 43.52 3.16
4410 4531 7.011482 GGACAACAGAGCAAAGGTATAATACTG 59.989 40.741 0.00 0.00 0.00 2.74
4411 4532 7.048512 GGACAACAGAGCAAAGGTATAATACT 58.951 38.462 0.00 0.00 0.00 2.12
4412 4533 6.821665 TGGACAACAGAGCAAAGGTATAATAC 59.178 38.462 0.00 0.00 0.00 1.89
4413 4534 6.953101 TGGACAACAGAGCAAAGGTATAATA 58.047 36.000 0.00 0.00 0.00 0.98
4415 4536 5.235850 TGGACAACAGAGCAAAGGTATAA 57.764 39.130 0.00 0.00 0.00 0.98
4416 4537 4.901197 TGGACAACAGAGCAAAGGTATA 57.099 40.909 0.00 0.00 0.00 1.47
4417 4538 3.788227 TGGACAACAGAGCAAAGGTAT 57.212 42.857 0.00 0.00 0.00 2.73
4445 4567 4.823442 TCACATATACGTACTGTACCAGGG 59.177 45.833 12.08 1.20 35.44 4.45
4446 4568 5.530171 AGTCACATATACGTACTGTACCAGG 59.470 44.000 12.08 1.54 35.44 4.45
4448 4570 6.114767 TGAGTCACATATACGTACTGTACCA 58.885 40.000 12.08 1.27 35.44 3.25
4449 4571 6.609237 TGAGTCACATATACGTACTGTACC 57.391 41.667 12.08 6.32 35.44 3.34
4451 4573 9.420551 CTAGATGAGTCACATATACGTACTGTA 57.579 37.037 11.17 0.00 39.56 2.74
4454 4576 9.727859 AATCTAGATGAGTCACATATACGTACT 57.272 33.333 5.86 0.00 39.56 2.73
4514 4646 3.357203 ACCAATTCTAGAGCAGACGAGA 58.643 45.455 0.00 0.00 31.12 4.04
4517 4649 2.428890 AGGACCAATTCTAGAGCAGACG 59.571 50.000 0.00 0.00 31.12 4.18
4539 4674 9.625747 AGTTAACCAATCTCTACTAGTACTACC 57.374 37.037 0.88 0.00 0.00 3.18
4546 4681 7.498570 ACCTCGTAGTTAACCAATCTCTACTAG 59.501 40.741 0.88 0.00 31.81 2.57
4547 4682 7.341805 ACCTCGTAGTTAACCAATCTCTACTA 58.658 38.462 0.88 0.00 31.81 1.82
4548 4683 6.186234 ACCTCGTAGTTAACCAATCTCTACT 58.814 40.000 0.88 0.00 31.81 2.57
4549 4684 6.448207 ACCTCGTAGTTAACCAATCTCTAC 57.552 41.667 0.88 0.00 0.00 2.59
4550 4685 7.318141 CAAACCTCGTAGTTAACCAATCTCTA 58.682 38.462 0.88 0.00 0.00 2.43
4551 4686 5.997384 AACCTCGTAGTTAACCAATCTCT 57.003 39.130 0.88 0.00 0.00 3.10
4552 4687 5.163884 GCAAACCTCGTAGTTAACCAATCTC 60.164 44.000 0.88 0.00 0.00 2.75
4553 4688 4.694037 GCAAACCTCGTAGTTAACCAATCT 59.306 41.667 0.88 0.00 0.00 2.40
4554 4689 4.694037 AGCAAACCTCGTAGTTAACCAATC 59.306 41.667 0.88 0.00 0.00 2.67
4555 4690 4.454504 CAGCAAACCTCGTAGTTAACCAAT 59.545 41.667 0.88 0.00 0.00 3.16
4556 4691 3.810941 CAGCAAACCTCGTAGTTAACCAA 59.189 43.478 0.88 0.00 0.00 3.67
4557 4692 3.069872 TCAGCAAACCTCGTAGTTAACCA 59.930 43.478 0.88 0.00 0.00 3.67
4558 4693 3.656559 TCAGCAAACCTCGTAGTTAACC 58.343 45.455 0.88 0.00 0.00 2.85
4559 4694 5.519206 CCTATCAGCAAACCTCGTAGTTAAC 59.481 44.000 0.00 0.00 0.00 2.01
4560 4695 5.186409 ACCTATCAGCAAACCTCGTAGTTAA 59.814 40.000 0.00 0.00 0.00 2.01
4561 4696 4.708421 ACCTATCAGCAAACCTCGTAGTTA 59.292 41.667 0.00 0.00 0.00 2.24
4562 4697 3.514309 ACCTATCAGCAAACCTCGTAGTT 59.486 43.478 0.00 0.00 0.00 2.24
4563 4698 3.097614 ACCTATCAGCAAACCTCGTAGT 58.902 45.455 0.00 0.00 0.00 2.73
4564 4699 3.802948 ACCTATCAGCAAACCTCGTAG 57.197 47.619 0.00 0.00 0.00 3.51
4565 4700 4.439153 CGTAACCTATCAGCAAACCTCGTA 60.439 45.833 0.00 0.00 0.00 3.43
4566 4701 3.675228 CGTAACCTATCAGCAAACCTCGT 60.675 47.826 0.00 0.00 0.00 4.18
4567 4702 2.858344 CGTAACCTATCAGCAAACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
4568 4703 3.118884 TCCGTAACCTATCAGCAAACCTC 60.119 47.826 0.00 0.00 0.00 3.85
4569 4704 2.835764 TCCGTAACCTATCAGCAAACCT 59.164 45.455 0.00 0.00 0.00 3.50
4570 4705 3.255969 TCCGTAACCTATCAGCAAACC 57.744 47.619 0.00 0.00 0.00 3.27
4571 4706 4.439057 TCATCCGTAACCTATCAGCAAAC 58.561 43.478 0.00 0.00 0.00 2.93
4572 4707 4.746535 TCATCCGTAACCTATCAGCAAA 57.253 40.909 0.00 0.00 0.00 3.68
4573 4708 4.343814 TCATCATCCGTAACCTATCAGCAA 59.656 41.667 0.00 0.00 0.00 3.91
4574 4709 3.895041 TCATCATCCGTAACCTATCAGCA 59.105 43.478 0.00 0.00 0.00 4.41
4575 4710 4.021894 ACTCATCATCCGTAACCTATCAGC 60.022 45.833 0.00 0.00 0.00 4.26
4576 4711 5.713792 ACTCATCATCCGTAACCTATCAG 57.286 43.478 0.00 0.00 0.00 2.90
4577 4712 7.002276 TCTAACTCATCATCCGTAACCTATCA 58.998 38.462 0.00 0.00 0.00 2.15
4578 4713 7.175293 AGTCTAACTCATCATCCGTAACCTATC 59.825 40.741 0.00 0.00 0.00 2.08
4579 4714 7.005296 AGTCTAACTCATCATCCGTAACCTAT 58.995 38.462 0.00 0.00 0.00 2.57
4580 4715 6.363065 AGTCTAACTCATCATCCGTAACCTA 58.637 40.000 0.00 0.00 0.00 3.08
4581 4716 5.202004 AGTCTAACTCATCATCCGTAACCT 58.798 41.667 0.00 0.00 0.00 3.50
4582 4717 5.517322 AGTCTAACTCATCATCCGTAACC 57.483 43.478 0.00 0.00 0.00 2.85
4583 4718 5.749109 CCAAGTCTAACTCATCATCCGTAAC 59.251 44.000 0.00 0.00 0.00 2.50
4584 4719 5.681437 GCCAAGTCTAACTCATCATCCGTAA 60.681 44.000 0.00 0.00 0.00 3.18
4585 4720 4.202121 GCCAAGTCTAACTCATCATCCGTA 60.202 45.833 0.00 0.00 0.00 4.02
4586 4721 3.430929 GCCAAGTCTAACTCATCATCCGT 60.431 47.826 0.00 0.00 0.00 4.69
4587 4722 3.126831 GCCAAGTCTAACTCATCATCCG 58.873 50.000 0.00 0.00 0.00 4.18
4588 4723 4.142609 TGCCAAGTCTAACTCATCATCC 57.857 45.455 0.00 0.00 0.00 3.51
4589 4724 4.574013 CCTTGCCAAGTCTAACTCATCATC 59.426 45.833 3.37 0.00 0.00 2.92
4590 4725 4.521146 CCTTGCCAAGTCTAACTCATCAT 58.479 43.478 3.37 0.00 0.00 2.45
4591 4726 3.869912 GCCTTGCCAAGTCTAACTCATCA 60.870 47.826 3.37 0.00 0.00 3.07
4592 4727 2.680339 GCCTTGCCAAGTCTAACTCATC 59.320 50.000 3.37 0.00 0.00 2.92
4593 4728 2.716217 GCCTTGCCAAGTCTAACTCAT 58.284 47.619 3.37 0.00 0.00 2.90
4594 4729 1.608025 CGCCTTGCCAAGTCTAACTCA 60.608 52.381 3.37 0.00 0.00 3.41
4595 4730 1.079503 CGCCTTGCCAAGTCTAACTC 58.920 55.000 3.37 0.00 0.00 3.01
4596 4731 0.955919 GCGCCTTGCCAAGTCTAACT 60.956 55.000 3.37 0.00 37.76 2.24
4597 4732 1.502190 GCGCCTTGCCAAGTCTAAC 59.498 57.895 3.37 0.00 37.76 2.34
4598 4733 2.032634 CGCGCCTTGCCAAGTCTAA 61.033 57.895 0.00 0.00 42.08 2.10
4599 4734 2.434185 CGCGCCTTGCCAAGTCTA 60.434 61.111 0.00 0.00 42.08 2.59
4633 4768 2.742372 CGGCGAAACCCAGACCTG 60.742 66.667 0.00 0.00 33.26 4.00
4634 4769 4.699522 GCGGCGAAACCCAGACCT 62.700 66.667 12.98 0.00 33.26 3.85
4682 4817 1.346395 TGGCGTACTCTTCAATGTGGT 59.654 47.619 0.00 0.00 0.00 4.16
4683 4818 2.093306 TGGCGTACTCTTCAATGTGG 57.907 50.000 0.00 0.00 0.00 4.17
4684 4819 3.181507 CCATTGGCGTACTCTTCAATGTG 60.182 47.826 17.59 10.60 42.66 3.21
4685 4820 3.009723 CCATTGGCGTACTCTTCAATGT 58.990 45.455 17.59 0.00 42.66 2.71
4686 4821 3.009723 ACCATTGGCGTACTCTTCAATG 58.990 45.455 1.54 14.66 43.37 2.82
4687 4822 3.009723 CACCATTGGCGTACTCTTCAAT 58.990 45.455 1.54 0.00 0.00 2.57
4688 4823 2.224426 ACACCATTGGCGTACTCTTCAA 60.224 45.455 1.54 0.00 0.00 2.69
4689 4824 1.346395 ACACCATTGGCGTACTCTTCA 59.654 47.619 1.54 0.00 0.00 3.02
4690 4825 2.094762 ACACCATTGGCGTACTCTTC 57.905 50.000 1.54 0.00 0.00 2.87
4691 4826 2.354403 GGTACACCATTGGCGTACTCTT 60.354 50.000 25.52 0.00 40.06 2.85
4692 4827 1.206371 GGTACACCATTGGCGTACTCT 59.794 52.381 25.52 0.00 40.06 3.24
4693 4828 1.066716 TGGTACACCATTGGCGTACTC 60.067 52.381 25.52 18.41 40.06 2.59
4694 4829 0.978151 TGGTACACCATTGGCGTACT 59.022 50.000 25.52 0.00 40.06 2.73
4695 4830 3.536548 TGGTACACCATTGGCGTAC 57.463 52.632 20.90 20.90 42.01 3.67
4708 4843 8.290325 GTGCTGCCTTCTATAAAAATATGGTAC 58.710 37.037 0.00 0.00 0.00 3.34
4709 4844 7.996066 TGTGCTGCCTTCTATAAAAATATGGTA 59.004 33.333 0.00 0.00 0.00 3.25
4710 4845 6.833416 TGTGCTGCCTTCTATAAAAATATGGT 59.167 34.615 0.00 0.00 0.00 3.55
4711 4846 7.275888 TGTGCTGCCTTCTATAAAAATATGG 57.724 36.000 0.00 0.00 0.00 2.74
4712 4847 9.188588 CAATGTGCTGCCTTCTATAAAAATATG 57.811 33.333 0.00 0.00 0.00 1.78
4713 4848 9.135189 TCAATGTGCTGCCTTCTATAAAAATAT 57.865 29.630 0.00 0.00 0.00 1.28
4714 4849 8.405531 GTCAATGTGCTGCCTTCTATAAAAATA 58.594 33.333 0.00 0.00 0.00 1.40
4715 4850 7.093814 TGTCAATGTGCTGCCTTCTATAAAAAT 60.094 33.333 0.00 0.00 0.00 1.82
4716 4851 6.208402 TGTCAATGTGCTGCCTTCTATAAAAA 59.792 34.615 0.00 0.00 0.00 1.94
4717 4852 5.709631 TGTCAATGTGCTGCCTTCTATAAAA 59.290 36.000 0.00 0.00 0.00 1.52
4718 4853 5.252547 TGTCAATGTGCTGCCTTCTATAAA 58.747 37.500 0.00 0.00 0.00 1.40
4719 4854 4.842574 TGTCAATGTGCTGCCTTCTATAA 58.157 39.130 0.00 0.00 0.00 0.98
4720 4855 4.486125 TGTCAATGTGCTGCCTTCTATA 57.514 40.909 0.00 0.00 0.00 1.31
4721 4856 3.354948 TGTCAATGTGCTGCCTTCTAT 57.645 42.857 0.00 0.00 0.00 1.98
4722 4857 2.857186 TGTCAATGTGCTGCCTTCTA 57.143 45.000 0.00 0.00 0.00 2.10
4723 4858 1.985473 TTGTCAATGTGCTGCCTTCT 58.015 45.000 0.00 0.00 0.00 2.85
4724 4859 2.798976 TTTGTCAATGTGCTGCCTTC 57.201 45.000 0.00 0.00 0.00 3.46
4725 4860 3.756933 ATTTTGTCAATGTGCTGCCTT 57.243 38.095 0.00 0.00 0.00 4.35
4726 4861 3.395639 CAATTTTGTCAATGTGCTGCCT 58.604 40.909 0.00 0.00 0.00 4.75
4727 4862 2.481185 CCAATTTTGTCAATGTGCTGCC 59.519 45.455 0.00 0.00 0.00 4.85
4728 4863 3.391965 TCCAATTTTGTCAATGTGCTGC 58.608 40.909 0.00 0.00 0.00 5.25
4729 4864 4.624015 ACTCCAATTTTGTCAATGTGCTG 58.376 39.130 0.00 0.00 0.00 4.41
4747 4882 3.208747 TCTTCCAACAGGAACAACTCC 57.791 47.619 0.00 0.00 45.81 3.85
4759 4894 2.552315 TGGCGACTTGATTTCTTCCAAC 59.448 45.455 0.00 0.00 0.00 3.77
4760 4895 2.857483 TGGCGACTTGATTTCTTCCAA 58.143 42.857 0.00 0.00 0.00 3.53
4761 4896 2.559698 TGGCGACTTGATTTCTTCCA 57.440 45.000 0.00 0.00 0.00 3.53
4762 4897 2.749621 ACATGGCGACTTGATTTCTTCC 59.250 45.455 11.72 0.00 38.76 3.46
4770 5135 2.816672 TGCAAAATACATGGCGACTTGA 59.183 40.909 11.72 0.00 38.76 3.02
4776 5145 1.991965 GTGGTTGCAAAATACATGGCG 59.008 47.619 0.00 0.00 0.00 5.69
4802 5171 1.402984 GGCTCTTCTCGTACACACCAG 60.403 57.143 0.00 0.00 0.00 4.00
4803 5172 0.601558 GGCTCTTCTCGTACACACCA 59.398 55.000 0.00 0.00 0.00 4.17
4804 5173 0.456312 CGGCTCTTCTCGTACACACC 60.456 60.000 0.00 0.00 0.00 4.16
4805 5174 0.456312 CCGGCTCTTCTCGTACACAC 60.456 60.000 0.00 0.00 0.00 3.82
4806 5175 0.892358 ACCGGCTCTTCTCGTACACA 60.892 55.000 0.00 0.00 0.00 3.72
4807 5176 0.179169 GACCGGCTCTTCTCGTACAC 60.179 60.000 0.00 0.00 0.00 2.90
4897 5279 6.928492 GCTCTTCTTCTTCTTCTTCTTCTTCA 59.072 38.462 0.00 0.00 0.00 3.02
4898 5280 6.928492 TGCTCTTCTTCTTCTTCTTCTTCTTC 59.072 38.462 0.00 0.00 0.00 2.87
4899 5281 6.705825 GTGCTCTTCTTCTTCTTCTTCTTCTT 59.294 38.462 0.00 0.00 0.00 2.52
4900 5282 6.223120 GTGCTCTTCTTCTTCTTCTTCTTCT 58.777 40.000 0.00 0.00 0.00 2.85
4901 5283 5.118510 CGTGCTCTTCTTCTTCTTCTTCTTC 59.881 44.000 0.00 0.00 0.00 2.87
4902 5284 4.987912 CGTGCTCTTCTTCTTCTTCTTCTT 59.012 41.667 0.00 0.00 0.00 2.52
4903 5285 4.555262 CGTGCTCTTCTTCTTCTTCTTCT 58.445 43.478 0.00 0.00 0.00 2.85
4904 5286 3.677596 CCGTGCTCTTCTTCTTCTTCTTC 59.322 47.826 0.00 0.00 0.00 2.87
4905 5287 3.658709 CCGTGCTCTTCTTCTTCTTCTT 58.341 45.455 0.00 0.00 0.00 2.52
4906 5288 2.611722 GCCGTGCTCTTCTTCTTCTTCT 60.612 50.000 0.00 0.00 0.00 2.85
4907 5289 1.729517 GCCGTGCTCTTCTTCTTCTTC 59.270 52.381 0.00 0.00 0.00 2.87
4908 5290 1.802069 GCCGTGCTCTTCTTCTTCTT 58.198 50.000 0.00 0.00 0.00 2.52
4909 5291 0.389166 CGCCGTGCTCTTCTTCTTCT 60.389 55.000 0.00 0.00 0.00 2.85
4910 5292 0.388649 TCGCCGTGCTCTTCTTCTTC 60.389 55.000 0.00 0.00 0.00 2.87
4911 5293 0.033504 TTCGCCGTGCTCTTCTTCTT 59.966 50.000 0.00 0.00 0.00 2.52
4912 5294 0.389166 CTTCGCCGTGCTCTTCTTCT 60.389 55.000 0.00 0.00 0.00 2.85
4916 5298 3.843240 CGCTTCGCCGTGCTCTTC 61.843 66.667 3.85 0.00 0.00 2.87
4925 5307 0.995234 GAAACCGTTTTCGCTTCGCC 60.995 55.000 0.00 0.00 42.58 5.54
4946 5328 2.372172 TCAGTTCTCAAGGGAAGGGAAC 59.628 50.000 0.00 0.00 37.23 3.62
4949 5331 2.373502 AGTTCAGTTCTCAAGGGAAGGG 59.626 50.000 0.00 0.00 0.00 3.95
4950 5332 3.071602 TCAGTTCAGTTCTCAAGGGAAGG 59.928 47.826 0.00 0.00 0.00 3.46
4951 5333 4.061596 GTCAGTTCAGTTCTCAAGGGAAG 58.938 47.826 0.00 0.00 0.00 3.46
4957 5339 4.191544 CCTTGTGTCAGTTCAGTTCTCAA 58.808 43.478 0.00 0.00 0.00 3.02
4961 5343 4.636206 AGAAACCTTGTGTCAGTTCAGTTC 59.364 41.667 0.00 0.00 0.00 3.01
4968 5350 1.202651 CCCGAGAAACCTTGTGTCAGT 60.203 52.381 0.00 0.00 0.00 3.41
4969 5351 1.512926 CCCGAGAAACCTTGTGTCAG 58.487 55.000 0.00 0.00 0.00 3.51
4970 5352 0.107831 CCCCGAGAAACCTTGTGTCA 59.892 55.000 0.00 0.00 0.00 3.58
4971 5353 0.605589 CCCCCGAGAAACCTTGTGTC 60.606 60.000 0.00 0.00 0.00 3.67
4972 5354 1.454539 CCCCCGAGAAACCTTGTGT 59.545 57.895 0.00 0.00 0.00 3.72
4973 5355 4.397348 CCCCCGAGAAACCTTGTG 57.603 61.111 0.00 0.00 0.00 3.33
5018 5400 2.773487 TCCAGTTTGACATGGTAACCG 58.227 47.619 0.00 0.00 37.84 4.44
5072 5461 1.657487 AACACGTCTCACTGCGTCG 60.657 57.895 0.00 0.00 39.48 5.12
5108 5508 0.804989 ACGCGGCGTAGTACTAAACT 59.195 50.000 28.37 0.00 38.73 2.66
5115 5515 2.173020 TGATCGACGCGGCGTAGTA 61.173 57.895 35.82 16.42 41.37 1.82
5116 5516 3.502455 TGATCGACGCGGCGTAGT 61.502 61.111 35.82 21.63 41.37 2.73
5117 5517 3.017314 GTGATCGACGCGGCGTAG 61.017 66.667 35.82 27.68 41.37 3.51
5118 5518 4.541482 GGTGATCGACGCGGCGTA 62.541 66.667 35.82 21.62 41.37 4.42
5121 5521 2.871427 GATTGGTGATCGACGCGGC 61.871 63.158 12.47 6.41 0.00 6.53
5122 5522 3.309675 GATTGGTGATCGACGCGG 58.690 61.111 12.47 0.00 0.00 6.46
5129 5529 0.462047 AACGGAGGCGATTGGTGATC 60.462 55.000 0.00 0.00 0.00 2.92
5130 5530 0.828022 TAACGGAGGCGATTGGTGAT 59.172 50.000 0.00 0.00 0.00 3.06
5131 5531 0.828022 ATAACGGAGGCGATTGGTGA 59.172 50.000 0.00 0.00 0.00 4.02
5132 5532 1.663695 AATAACGGAGGCGATTGGTG 58.336 50.000 0.00 0.00 0.00 4.17
5133 5533 2.413310 AAATAACGGAGGCGATTGGT 57.587 45.000 0.00 0.00 0.00 3.67
5134 5534 3.775661 AAAAATAACGGAGGCGATTGG 57.224 42.857 0.00 0.00 0.00 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.