Multiple sequence alignment - TraesCS7A01G326000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G326000 chr7A 100.000 3161 0 0 1 3161 473920352 473923512 0.000000e+00 5838.0
1 TraesCS7A01G326000 chr7D 91.884 2612 97 60 1 2543 412760547 412763112 0.000000e+00 3542.0
2 TraesCS7A01G326000 chr7D 85.434 357 49 3 2684 3039 99616697 99616343 4.980000e-98 368.0
3 TraesCS7A01G326000 chr7D 83.812 383 53 5 2657 3039 626254608 626254235 3.880000e-94 355.0
4 TraesCS7A01G326000 chr7D 90.244 123 10 2 3040 3161 412763452 412763573 3.260000e-35 159.0
5 TraesCS7A01G326000 chr7B 93.292 2445 73 30 1 2411 426971969 426974356 0.000000e+00 3522.0
6 TraesCS7A01G326000 chr7B 85.634 355 50 1 2685 3039 427398643 427398996 3.850000e-99 372.0
7 TraesCS7A01G326000 chr7B 95.312 128 4 1 2420 2545 426974832 426974959 5.350000e-48 202.0
8 TraesCS7A01G326000 chr7B 94.309 123 6 1 3040 3161 426975485 426975607 1.500000e-43 187.0
9 TraesCS7A01G326000 chr7B 89.344 122 7 3 2536 2656 426975371 426975487 7.060000e-32 148.0
10 TraesCS7A01G326000 chr4B 89.034 383 36 3 2657 3039 450912500 450912876 1.330000e-128 470.0
11 TraesCS7A01G326000 chr4B 85.000 360 46 6 2684 3039 642966461 642966106 3.000000e-95 359.0
12 TraesCS7A01G326000 chr4D 89.239 381 30 7 2659 3039 366320849 366321218 1.720000e-127 466.0
13 TraesCS7A01G326000 chr4D 89.091 55 6 0 1026 1080 69680128 69680074 5.660000e-08 69.4
14 TraesCS7A01G326000 chr3B 86.351 359 43 5 2684 3039 260140345 260140700 1.380000e-103 387.0
15 TraesCS7A01G326000 chr4A 85.393 356 49 3 2684 3039 241019150 241019502 1.790000e-97 366.0
16 TraesCS7A01G326000 chr3D 85.511 352 46 5 2689 3039 590229099 590228752 2.320000e-96 363.0
17 TraesCS7A01G326000 chr2A 86.154 260 27 7 1334 1593 765547466 765547216 4.020000e-69 272.0
18 TraesCS7A01G326000 chr2A 83.984 256 32 8 1328 1583 765374120 765374366 1.470000e-58 237.0
19 TraesCS7A01G326000 chr2A 81.395 258 39 7 1326 1583 765515993 765515745 5.350000e-48 202.0
20 TraesCS7A01G326000 chr2A 88.571 140 16 0 1031 1170 765442210 765442071 1.510000e-38 171.0
21 TraesCS7A01G326000 chr2D 85.130 269 31 5 1326 1594 639733596 639733855 1.870000e-67 267.0
22 TraesCS7A01G326000 chr2D 83.456 272 36 6 1326 1597 639821466 639821204 8.760000e-61 244.0
23 TraesCS7A01G326000 chr2D 88.514 148 15 2 1025 1170 639821818 639821671 9.010000e-41 178.0
24 TraesCS7A01G326000 chr2D 88.811 143 16 0 1028 1170 639746742 639746600 3.240000e-40 176.0
25 TraesCS7A01G326000 chr2B 85.156 256 29 7 1328 1583 798958087 798958333 1.460000e-63 254.0
26 TraesCS7A01G326000 chr2B 84.015 269 34 6 1326 1594 799029603 799029862 1.880000e-62 250.0
27 TraesCS7A01G326000 chr2B 82.558 258 36 7 1326 1583 799107219 799106971 5.310000e-53 219.0
28 TraesCS7A01G326000 chr2B 90.909 143 13 0 1028 1170 799107558 799107416 3.220000e-45 193.0
29 TraesCS7A01G326000 chr2B 89.726 146 15 0 1025 1170 799029267 799029412 1.500000e-43 187.0
30 TraesCS7A01G326000 chr2B 87.324 142 18 0 1028 1169 799047569 799047428 2.520000e-36 163.0
31 TraesCS7A01G326000 chr6B 75.314 239 43 11 1334 1558 688606519 688606283 2.010000e-17 100.0
32 TraesCS7A01G326000 chr6A 74.074 243 49 7 1322 1551 599260774 599261015 1.560000e-13 87.9
33 TraesCS7A01G326000 chr6A 74.059 239 46 8 1328 1552 599716416 599716652 2.020000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G326000 chr7A 473920352 473923512 3160 False 5838.00 5838 100.00000 1 3161 1 chr7A.!!$F1 3160
1 TraesCS7A01G326000 chr7D 412760547 412763573 3026 False 1850.50 3542 91.06400 1 3161 2 chr7D.!!$F1 3160
2 TraesCS7A01G326000 chr7B 426971969 426975607 3638 False 1014.75 3522 93.06425 1 3161 4 chr7B.!!$F2 3160
3 TraesCS7A01G326000 chr2D 639821204 639821818 614 True 211.00 244 85.98500 1025 1597 2 chr2D.!!$R2 572
4 TraesCS7A01G326000 chr2B 799029267 799029862 595 False 218.50 250 86.87050 1025 1594 2 chr2B.!!$F2 569
5 TraesCS7A01G326000 chr2B 799106971 799107558 587 True 206.00 219 86.73350 1028 1583 2 chr2B.!!$R2 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1036 0.658829 GCATCGTCGTCTGATCGAGG 60.659 60.0 12.67 12.67 43.81 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2894 3921 0.041135 CGCGAAAAACCGGCAAGTTA 60.041 50.0 0.0 0.0 0.0 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.885297 CAGGTTCAAGTTCTTGACCACAT 59.115 43.478 22.73 13.60 0.00 3.21
136 141 3.970410 CCTCCAGCAACCAGGCCA 61.970 66.667 5.01 0.00 0.00 5.36
166 182 4.525686 ACGAGTATCTTAATTCGACGAGC 58.474 43.478 0.00 0.00 36.89 5.03
334 372 9.847224 ATACATAGTCCCTTTTTATTGGTACAG 57.153 33.333 0.00 0.00 42.39 2.74
392 430 4.333690 GTGACAGAGAAGGGTCAGTACTA 58.666 47.826 0.00 0.00 44.05 1.82
393 431 4.951094 GTGACAGAGAAGGGTCAGTACTAT 59.049 45.833 0.00 0.00 44.05 2.12
500 541 5.445964 TCTACCTTCCAAAAAGCTTCACTT 58.554 37.500 0.00 0.00 41.70 3.16
501 542 4.655762 ACCTTCCAAAAAGCTTCACTTC 57.344 40.909 0.00 0.00 37.75 3.01
502 543 4.023291 ACCTTCCAAAAAGCTTCACTTCA 58.977 39.130 0.00 0.00 37.75 3.02
503 544 4.142160 ACCTTCCAAAAAGCTTCACTTCAC 60.142 41.667 0.00 0.00 37.75 3.18
504 545 4.098501 CCTTCCAAAAAGCTTCACTTCACT 59.901 41.667 0.00 0.00 37.75 3.41
505 546 5.299279 CCTTCCAAAAAGCTTCACTTCACTA 59.701 40.000 0.00 0.00 37.75 2.74
506 547 5.751243 TCCAAAAAGCTTCACTTCACTAC 57.249 39.130 0.00 0.00 37.75 2.73
571 612 1.094785 CCGTTCCTGCTTTGGTATGG 58.905 55.000 0.00 0.00 0.00 2.74
627 670 1.556911 ACCAGTCCATGTCTCATGTCC 59.443 52.381 8.57 0.09 0.00 4.02
691 734 5.646577 ATACACGGATTGTCTAGATAGCC 57.353 43.478 0.00 0.00 39.91 3.93
693 736 3.319405 ACACGGATTGTCTAGATAGCCAG 59.681 47.826 11.28 6.51 29.79 4.85
695 738 2.297315 CGGATTGTCTAGATAGCCAGCA 59.703 50.000 11.28 0.00 0.00 4.41
696 739 3.658709 GGATTGTCTAGATAGCCAGCAC 58.341 50.000 0.00 0.00 0.00 4.40
697 740 3.556004 GGATTGTCTAGATAGCCAGCACC 60.556 52.174 0.00 0.00 0.00 5.01
698 741 2.461300 TGTCTAGATAGCCAGCACCT 57.539 50.000 0.00 0.00 0.00 4.00
699 742 3.595190 TGTCTAGATAGCCAGCACCTA 57.405 47.619 0.00 0.00 0.00 3.08
701 744 3.138468 TGTCTAGATAGCCAGCACCTAGA 59.862 47.826 0.00 9.90 35.00 2.43
702 745 4.202620 TGTCTAGATAGCCAGCACCTAGAT 60.203 45.833 14.37 0.00 38.33 1.98
733 776 7.099764 TCCTAAAAGAATGATGTCTGTCTGTC 58.900 38.462 0.00 0.00 0.00 3.51
737 780 6.596309 AAGAATGATGTCTGTCTGTCTGTA 57.404 37.500 0.00 0.00 0.00 2.74
738 781 6.788598 AGAATGATGTCTGTCTGTCTGTAT 57.211 37.500 0.00 0.00 0.00 2.29
803 846 2.222953 GCAACAACTAATTAGGTCGGCG 60.223 50.000 16.73 0.00 0.00 6.46
804 847 2.997986 CAACAACTAATTAGGTCGGCGT 59.002 45.455 16.73 1.59 0.00 5.68
805 848 2.613691 ACAACTAATTAGGTCGGCGTG 58.386 47.619 16.73 0.00 0.00 5.34
806 849 1.326548 CAACTAATTAGGTCGGCGTGC 59.673 52.381 16.73 0.68 0.00 5.34
807 850 0.822164 ACTAATTAGGTCGGCGTGCT 59.178 50.000 16.73 0.00 0.00 4.40
822 865 2.160417 GCGTGCTATGCCATCCTAAATC 59.840 50.000 0.00 0.00 0.00 2.17
957 1012 2.306341 TGCATGTTCTAGAGCAGAGC 57.694 50.000 21.91 21.91 33.83 4.09
981 1036 0.658829 GCATCGTCGTCTGATCGAGG 60.659 60.000 12.67 12.67 43.81 4.63
1161 1216 1.742768 GATCGAGCCGTGGGATCTT 59.257 57.895 0.00 0.00 35.75 2.40
1190 1277 1.987770 GTAATTCGTTCGCCACTTCGA 59.012 47.619 0.00 0.00 36.60 3.71
1191 1278 1.722011 AATTCGTTCGCCACTTCGAT 58.278 45.000 0.00 0.00 38.37 3.59
1193 1280 1.068832 TTCGTTCGCCACTTCGATCG 61.069 55.000 9.36 9.36 46.64 3.69
1194 1281 2.695646 GTTCGCCACTTCGATCGC 59.304 61.111 11.09 0.00 38.37 4.58
1196 1283 4.847516 TCGCCACTTCGATCGCCG 62.848 66.667 11.09 6.07 40.25 6.46
1197 1284 4.847516 CGCCACTTCGATCGCCGA 62.848 66.667 11.09 0.00 46.94 5.54
1220 1307 1.929836 CTGTAGAGCTCGATGGTTTGC 59.070 52.381 8.37 0.00 0.00 3.68
1221 1308 1.550524 TGTAGAGCTCGATGGTTTGCT 59.449 47.619 8.37 0.00 38.59 3.91
1223 1310 2.191128 AGAGCTCGATGGTTTGCTTT 57.809 45.000 8.37 0.00 35.76 3.51
1224 1311 2.508526 AGAGCTCGATGGTTTGCTTTT 58.491 42.857 8.37 0.00 35.76 2.27
1225 1312 2.227388 AGAGCTCGATGGTTTGCTTTTG 59.773 45.455 8.37 0.00 35.76 2.44
1263 1350 1.498865 GACCGAGCTGTGTGTGTTGG 61.499 60.000 0.00 0.00 0.00 3.77
1488 1605 0.037326 TCGGCATGAGAAAGACGCTT 60.037 50.000 0.00 0.00 0.00 4.68
1625 1742 5.531287 TGCAGATTCAAGATTCATCTCCATG 59.469 40.000 0.00 0.00 35.76 3.66
1679 1815 4.329801 GCAGTGCTAATTAATTTTGTGGGC 59.670 41.667 8.18 1.44 0.00 5.36
2164 2300 3.986277 TCCTCCAAGAACACTTAACGAC 58.014 45.455 0.00 0.00 0.00 4.34
2201 2339 6.095432 CGGAGGATTCAGATTATCTTGACT 57.905 41.667 0.00 0.00 0.00 3.41
2202 2340 5.925397 CGGAGGATTCAGATTATCTTGACTG 59.075 44.000 0.00 0.00 0.00 3.51
2203 2341 6.239148 CGGAGGATTCAGATTATCTTGACTGA 60.239 42.308 0.00 0.00 37.56 3.41
2305 2443 8.581253 AATTAGTTTCCACTTTGATTCTAGGG 57.419 34.615 0.00 0.00 34.06 3.53
2476 3084 7.169813 ACATCACTACATCATTGTATACTTGCG 59.830 37.037 4.17 0.61 37.68 4.85
2502 3112 4.962151 GGCACGTAAAGAGCGATTTTATTC 59.038 41.667 0.00 0.00 37.31 1.75
2569 3596 8.487028 TGTCTTTCTTTCTTTCTTCTTACTCCT 58.513 33.333 0.00 0.00 0.00 3.69
2574 3601 8.664211 TCTTTCTTTCTTCTTACTCCTGTTTC 57.336 34.615 0.00 0.00 0.00 2.78
2602 3629 3.245441 TCTTTAACCGTTCCTTCTCCCT 58.755 45.455 0.00 0.00 0.00 4.20
2603 3630 3.649502 TCTTTAACCGTTCCTTCTCCCTT 59.350 43.478 0.00 0.00 0.00 3.95
2609 3636 4.994282 ACCGTTCCTTCTCCCTTAAAATT 58.006 39.130 0.00 0.00 0.00 1.82
2656 3683 7.699391 TCGGTCAACTTATATATACTATTGCGC 59.301 37.037 0.00 0.00 0.00 6.09
2657 3684 7.486870 CGGTCAACTTATATATACTATTGCGCA 59.513 37.037 5.66 5.66 0.00 6.09
2658 3685 8.808529 GGTCAACTTATATATACTATTGCGCAG 58.191 37.037 11.31 0.87 0.00 5.18
2659 3686 9.569167 GTCAACTTATATATACTATTGCGCAGA 57.431 33.333 11.31 1.35 0.00 4.26
2671 3698 2.352814 GCGCAGAAATTCGCTTTGG 58.647 52.632 0.30 0.00 46.92 3.28
2672 3699 1.677353 GCGCAGAAATTCGCTTTGGC 61.677 55.000 0.30 1.78 46.92 4.52
2673 3700 0.387112 CGCAGAAATTCGCTTTGGCA 60.387 50.000 7.83 0.00 38.60 4.92
2674 3701 1.063031 GCAGAAATTCGCTTTGGCAC 58.937 50.000 0.00 0.00 38.60 5.01
2675 3702 1.602668 GCAGAAATTCGCTTTGGCACA 60.603 47.619 0.00 0.00 38.60 4.57
2676 3703 2.053627 CAGAAATTCGCTTTGGCACAC 58.946 47.619 0.00 0.00 39.29 3.82
2677 3704 1.052287 GAAATTCGCTTTGGCACACG 58.948 50.000 0.00 0.00 39.29 4.49
2678 3705 0.318614 AAATTCGCTTTGGCACACGG 60.319 50.000 0.00 0.00 39.29 4.94
2679 3706 2.141122 AATTCGCTTTGGCACACGGG 62.141 55.000 0.00 0.00 39.29 5.28
2680 3707 3.758973 TTCGCTTTGGCACACGGGA 62.759 57.895 0.00 0.00 39.29 5.14
2681 3708 3.726517 CGCTTTGGCACACGGGAG 61.727 66.667 0.00 0.00 39.29 4.30
2682 3709 2.594592 GCTTTGGCACACGGGAGT 60.595 61.111 0.00 0.00 39.29 3.85
2707 3734 4.704833 GCGCTCCTGCCACCAGAA 62.705 66.667 0.00 0.00 41.77 3.02
2708 3735 2.032528 CGCTCCTGCCACCAGAAA 59.967 61.111 0.00 0.00 41.77 2.52
2709 3736 1.600636 CGCTCCTGCCACCAGAAAA 60.601 57.895 0.00 0.00 41.77 2.29
2710 3737 1.172180 CGCTCCTGCCACCAGAAAAA 61.172 55.000 0.00 0.00 41.77 1.94
2734 3761 8.887036 AAATACTTCAAAGTGTGGAAAAATCC 57.113 30.769 5.66 0.00 40.07 3.01
2735 3762 4.932146 ACTTCAAAGTGTGGAAAAATCCG 58.068 39.130 0.00 0.00 37.98 4.18
2736 3763 4.642885 ACTTCAAAGTGTGGAAAAATCCGA 59.357 37.500 0.00 0.00 37.98 4.55
2737 3764 4.829064 TCAAAGTGTGGAAAAATCCGAG 57.171 40.909 0.00 0.00 0.00 4.63
2738 3765 4.456535 TCAAAGTGTGGAAAAATCCGAGA 58.543 39.130 0.00 0.00 0.00 4.04
2739 3766 4.274950 TCAAAGTGTGGAAAAATCCGAGAC 59.725 41.667 0.00 0.00 0.00 3.36
2740 3767 3.485463 AGTGTGGAAAAATCCGAGACA 57.515 42.857 0.00 0.00 0.00 3.41
2741 3768 3.815809 AGTGTGGAAAAATCCGAGACAA 58.184 40.909 0.00 0.00 0.00 3.18
2742 3769 4.204012 AGTGTGGAAAAATCCGAGACAAA 58.796 39.130 0.00 0.00 0.00 2.83
2743 3770 4.642885 AGTGTGGAAAAATCCGAGACAAAA 59.357 37.500 0.00 0.00 0.00 2.44
2744 3771 5.126384 AGTGTGGAAAAATCCGAGACAAAAA 59.874 36.000 0.00 0.00 0.00 1.94
2745 3772 5.983118 GTGTGGAAAAATCCGAGACAAAAAT 59.017 36.000 0.00 0.00 0.00 1.82
2746 3773 6.478673 GTGTGGAAAAATCCGAGACAAAAATT 59.521 34.615 0.00 0.00 0.00 1.82
2747 3774 7.011016 GTGTGGAAAAATCCGAGACAAAAATTT 59.989 33.333 0.00 0.00 0.00 1.82
2748 3775 7.010923 TGTGGAAAAATCCGAGACAAAAATTTG 59.989 33.333 4.40 4.40 43.62 2.32
2749 3776 6.481644 TGGAAAAATCCGAGACAAAAATTTGG 59.518 34.615 10.38 0.00 42.34 3.28
2750 3777 6.481976 GGAAAAATCCGAGACAAAAATTTGGT 59.518 34.615 10.38 0.00 42.34 3.67
2751 3778 6.843069 AAAATCCGAGACAAAAATTTGGTG 57.157 33.333 10.38 0.00 42.34 4.17
2752 3779 3.363341 TCCGAGACAAAAATTTGGTGC 57.637 42.857 10.38 0.42 42.34 5.01
2753 3780 2.690497 TCCGAGACAAAAATTTGGTGCA 59.310 40.909 10.38 0.00 42.34 4.57
2754 3781 3.320541 TCCGAGACAAAAATTTGGTGCAT 59.679 39.130 10.38 0.00 42.34 3.96
2755 3782 4.520874 TCCGAGACAAAAATTTGGTGCATA 59.479 37.500 10.38 0.00 42.34 3.14
2756 3783 4.621034 CCGAGACAAAAATTTGGTGCATAC 59.379 41.667 10.38 0.00 42.34 2.39
2757 3784 5.218885 CGAGACAAAAATTTGGTGCATACA 58.781 37.500 10.38 0.00 42.34 2.29
2758 3785 5.863397 CGAGACAAAAATTTGGTGCATACAT 59.137 36.000 10.38 0.00 42.34 2.29
2759 3786 6.033831 CGAGACAAAAATTTGGTGCATACATC 59.966 38.462 10.38 0.00 42.34 3.06
2760 3787 6.996509 AGACAAAAATTTGGTGCATACATCT 58.003 32.000 10.38 0.00 42.34 2.90
2761 3788 7.444299 AGACAAAAATTTGGTGCATACATCTT 58.556 30.769 10.38 0.00 42.34 2.40
2762 3789 7.385752 AGACAAAAATTTGGTGCATACATCTTG 59.614 33.333 10.38 0.00 42.34 3.02
2763 3790 7.215789 ACAAAAATTTGGTGCATACATCTTGA 58.784 30.769 10.38 0.00 42.34 3.02
2764 3791 7.171337 ACAAAAATTTGGTGCATACATCTTGAC 59.829 33.333 10.38 0.00 42.34 3.18
2765 3792 5.981088 AATTTGGTGCATACATCTTGACA 57.019 34.783 0.00 0.00 0.00 3.58
2766 3793 6.534475 AATTTGGTGCATACATCTTGACAT 57.466 33.333 0.00 0.00 0.00 3.06
2767 3794 5.981088 TTTGGTGCATACATCTTGACATT 57.019 34.783 0.00 0.00 0.00 2.71
2768 3795 7.643569 ATTTGGTGCATACATCTTGACATTA 57.356 32.000 0.00 0.00 0.00 1.90
2769 3796 7.643569 TTTGGTGCATACATCTTGACATTAT 57.356 32.000 0.00 0.00 0.00 1.28
2770 3797 8.744568 TTTGGTGCATACATCTTGACATTATA 57.255 30.769 0.00 0.00 0.00 0.98
2771 3798 8.922931 TTGGTGCATACATCTTGACATTATAT 57.077 30.769 0.00 0.00 0.00 0.86
2772 3799 8.552083 TGGTGCATACATCTTGACATTATATC 57.448 34.615 0.00 0.00 0.00 1.63
2773 3800 8.377799 TGGTGCATACATCTTGACATTATATCT 58.622 33.333 0.00 0.00 0.00 1.98
2774 3801 8.663025 GGTGCATACATCTTGACATTATATCTG 58.337 37.037 0.00 0.00 0.00 2.90
2775 3802 9.212641 GTGCATACATCTTGACATTATATCTGT 57.787 33.333 0.00 0.00 0.00 3.41
2776 3803 9.211485 TGCATACATCTTGACATTATATCTGTG 57.789 33.333 0.00 0.00 0.00 3.66
2777 3804 8.173775 GCATACATCTTGACATTATATCTGTGC 58.826 37.037 0.00 0.00 0.00 4.57
2778 3805 9.211485 CATACATCTTGACATTATATCTGTGCA 57.789 33.333 0.00 0.00 0.00 4.57
2779 3806 9.955102 ATACATCTTGACATTATATCTGTGCAT 57.045 29.630 0.00 0.00 0.00 3.96
2780 3807 8.095937 ACATCTTGACATTATATCTGTGCATG 57.904 34.615 0.00 0.00 0.00 4.06
2781 3808 7.718314 ACATCTTGACATTATATCTGTGCATGT 59.282 33.333 0.00 0.00 0.00 3.21
2782 3809 7.719778 TCTTGACATTATATCTGTGCATGTC 57.280 36.000 4.70 4.70 42.72 3.06
2785 3812 7.486802 TGACATTATATCTGTGCATGTCAAG 57.513 36.000 10.64 0.00 46.74 3.02
2786 3813 7.049754 TGACATTATATCTGTGCATGTCAAGT 58.950 34.615 10.64 0.00 46.74 3.16
2787 3814 7.553760 TGACATTATATCTGTGCATGTCAAGTT 59.446 33.333 10.64 0.00 46.74 2.66
2788 3815 8.284945 ACATTATATCTGTGCATGTCAAGTTT 57.715 30.769 0.00 0.00 0.00 2.66
2789 3816 8.742777 ACATTATATCTGTGCATGTCAAGTTTT 58.257 29.630 0.00 0.00 0.00 2.43
2790 3817 9.016623 CATTATATCTGTGCATGTCAAGTTTTG 57.983 33.333 0.00 0.00 0.00 2.44
2791 3818 6.822667 ATATCTGTGCATGTCAAGTTTTGA 57.177 33.333 0.00 0.00 37.33 2.69
2792 3819 4.979943 TCTGTGCATGTCAAGTTTTGAA 57.020 36.364 0.00 0.00 42.15 2.69
2793 3820 4.923893 TCTGTGCATGTCAAGTTTTGAAG 58.076 39.130 0.00 0.00 42.15 3.02
2794 3821 4.639755 TCTGTGCATGTCAAGTTTTGAAGA 59.360 37.500 0.00 0.00 42.15 2.87
2795 3822 5.125257 TCTGTGCATGTCAAGTTTTGAAGAA 59.875 36.000 0.00 0.00 42.15 2.52
2796 3823 5.718146 TGTGCATGTCAAGTTTTGAAGAAA 58.282 33.333 0.00 0.00 42.15 2.52
2797 3824 6.162079 TGTGCATGTCAAGTTTTGAAGAAAA 58.838 32.000 0.00 0.00 42.15 2.29
2798 3825 6.817641 TGTGCATGTCAAGTTTTGAAGAAAAT 59.182 30.769 0.00 0.00 42.15 1.82
2799 3826 7.010367 TGTGCATGTCAAGTTTTGAAGAAAATC 59.990 33.333 0.00 0.00 42.15 2.17
2800 3827 6.198778 TGCATGTCAAGTTTTGAAGAAAATCG 59.801 34.615 0.00 0.00 42.15 3.34
2801 3828 6.198966 GCATGTCAAGTTTTGAAGAAAATCGT 59.801 34.615 0.00 0.00 42.15 3.73
2802 3829 7.565789 GCATGTCAAGTTTTGAAGAAAATCGTC 60.566 37.037 0.00 0.00 42.15 4.20
2803 3830 6.847400 TGTCAAGTTTTGAAGAAAATCGTCA 58.153 32.000 0.00 0.00 42.15 4.35
2804 3831 7.479980 TGTCAAGTTTTGAAGAAAATCGTCAT 58.520 30.769 0.00 0.00 42.15 3.06
2805 3832 7.973388 TGTCAAGTTTTGAAGAAAATCGTCATT 59.027 29.630 0.00 0.00 42.15 2.57
2806 3833 8.807581 GTCAAGTTTTGAAGAAAATCGTCATTT 58.192 29.630 0.00 0.00 42.15 2.32
2807 3834 9.364989 TCAAGTTTTGAAGAAAATCGTCATTTT 57.635 25.926 0.00 0.00 39.52 1.82
2815 3842 4.853924 AAAATCGTCATTTTCTGTGGCT 57.146 36.364 0.00 0.00 37.63 4.75
2816 3843 4.853924 AAATCGTCATTTTCTGTGGCTT 57.146 36.364 0.00 0.00 0.00 4.35
2817 3844 3.837213 ATCGTCATTTTCTGTGGCTTG 57.163 42.857 0.00 0.00 0.00 4.01
2818 3845 2.571212 TCGTCATTTTCTGTGGCTTGT 58.429 42.857 0.00 0.00 0.00 3.16
2819 3846 2.290367 TCGTCATTTTCTGTGGCTTGTG 59.710 45.455 0.00 0.00 0.00 3.33
2820 3847 2.033299 CGTCATTTTCTGTGGCTTGTGT 59.967 45.455 0.00 0.00 0.00 3.72
2821 3848 3.249799 CGTCATTTTCTGTGGCTTGTGTA 59.750 43.478 0.00 0.00 0.00 2.90
2822 3849 4.260990 CGTCATTTTCTGTGGCTTGTGTAA 60.261 41.667 0.00 0.00 0.00 2.41
2823 3850 5.587289 GTCATTTTCTGTGGCTTGTGTAAA 58.413 37.500 0.00 0.00 0.00 2.01
2824 3851 6.039616 GTCATTTTCTGTGGCTTGTGTAAAA 58.960 36.000 0.00 0.00 0.00 1.52
2825 3852 6.533367 GTCATTTTCTGTGGCTTGTGTAAAAA 59.467 34.615 0.00 0.00 0.00 1.94
2852 3879 9.979578 ATACAAAAATATGTCTTGTGAAAAGCA 57.020 25.926 7.32 0.00 35.09 3.91
2853 3880 9.243637 TACAAAAATATGTCTTGTGAAAAGCAC 57.756 29.630 7.32 0.00 40.06 4.40
2862 3889 7.148641 TGTCTTGTGAAAAGCACTTTTTAACA 58.851 30.769 15.62 15.62 44.70 2.41
2863 3890 7.816995 TGTCTTGTGAAAAGCACTTTTTAACAT 59.183 29.630 18.26 0.00 45.34 2.71
2864 3891 8.321005 GTCTTGTGAAAAGCACTTTTTAACATC 58.679 33.333 18.26 12.04 45.34 3.06
2865 3892 8.031864 TCTTGTGAAAAGCACTTTTTAACATCA 58.968 29.630 18.26 7.23 45.34 3.07
2866 3893 7.754069 TGTGAAAAGCACTTTTTAACATCAG 57.246 32.000 15.62 0.00 42.59 2.90
2867 3894 7.542890 TGTGAAAAGCACTTTTTAACATCAGA 58.457 30.769 15.62 4.51 42.59 3.27
2868 3895 8.196771 TGTGAAAAGCACTTTTTAACATCAGAT 58.803 29.630 15.62 0.00 42.59 2.90
2869 3896 9.034544 GTGAAAAGCACTTTTTAACATCAGATT 57.965 29.630 9.59 0.00 44.27 2.40
2870 3897 9.598517 TGAAAAGCACTTTTTAACATCAGATTT 57.401 25.926 9.59 0.00 42.26 2.17
2873 3900 8.947055 AAGCACTTTTTAACATCAGATTTTGT 57.053 26.923 0.00 0.00 0.00 2.83
2874 3901 8.947055 AGCACTTTTTAACATCAGATTTTGTT 57.053 26.923 0.00 0.00 39.32 2.83
2875 3902 9.382275 AGCACTTTTTAACATCAGATTTTGTTT 57.618 25.926 0.00 0.00 37.29 2.83
2876 3903 9.986833 GCACTTTTTAACATCAGATTTTGTTTT 57.013 25.926 0.00 0.00 37.29 2.43
2886 3913 9.019764 ACATCAGATTTTGTTTTTCTTTACACG 57.980 29.630 0.00 0.00 0.00 4.49
2887 3914 9.019764 CATCAGATTTTGTTTTTCTTTACACGT 57.980 29.630 0.00 0.00 0.00 4.49
2888 3915 8.973835 TCAGATTTTGTTTTTCTTTACACGTT 57.026 26.923 0.00 0.00 0.00 3.99
2891 3918 9.843334 AGATTTTGTTTTTCTTTACACGTTACA 57.157 25.926 0.00 0.00 0.00 2.41
2892 3919 9.875660 GATTTTGTTTTTCTTTACACGTTACAC 57.124 29.630 0.00 0.00 0.00 2.90
2893 3920 8.792831 TTTTGTTTTTCTTTACACGTTACACA 57.207 26.923 0.00 0.00 0.00 3.72
2894 3921 8.967552 TTTGTTTTTCTTTACACGTTACACAT 57.032 26.923 0.00 0.00 0.00 3.21
2897 3924 9.488124 TGTTTTTCTTTACACGTTACACATAAC 57.512 29.630 0.00 0.00 37.85 1.89
2898 3925 9.706846 GTTTTTCTTTACACGTTACACATAACT 57.293 29.630 0.00 0.00 38.89 2.24
2900 3927 9.705471 TTTTCTTTACACGTTACACATAACTTG 57.295 29.630 0.00 3.03 43.06 3.16
2901 3928 6.879962 TCTTTACACGTTACACATAACTTGC 58.120 36.000 4.20 0.00 41.83 4.01
2902 3929 5.594724 TTACACGTTACACATAACTTGCC 57.405 39.130 4.20 0.00 41.83 4.52
2903 3930 2.477375 ACACGTTACACATAACTTGCCG 59.523 45.455 4.20 0.00 41.83 5.69
2904 3931 2.070783 ACGTTACACATAACTTGCCGG 58.929 47.619 0.00 0.00 38.89 6.13
2905 3932 2.070783 CGTTACACATAACTTGCCGGT 58.929 47.619 1.90 0.00 38.89 5.28
2906 3933 2.481185 CGTTACACATAACTTGCCGGTT 59.519 45.455 1.90 0.00 38.89 4.44
2907 3934 3.058777 CGTTACACATAACTTGCCGGTTT 60.059 43.478 1.90 0.00 38.89 3.27
2908 3935 4.555116 CGTTACACATAACTTGCCGGTTTT 60.555 41.667 1.90 0.00 38.89 2.43
2909 3936 5.283294 GTTACACATAACTTGCCGGTTTTT 58.717 37.500 1.90 0.00 38.15 1.94
2910 3937 3.972403 ACACATAACTTGCCGGTTTTTC 58.028 40.909 1.90 0.00 0.00 2.29
2911 3938 2.977169 CACATAACTTGCCGGTTTTTCG 59.023 45.455 1.90 0.00 0.00 3.46
2912 3939 1.982913 CATAACTTGCCGGTTTTTCGC 59.017 47.619 1.90 0.00 0.00 4.70
2913 3940 0.041135 TAACTTGCCGGTTTTTCGCG 60.041 50.000 1.90 0.00 0.00 5.87
2914 3941 1.716826 AACTTGCCGGTTTTTCGCGA 61.717 50.000 3.71 3.71 0.00 5.87
2915 3942 1.009449 CTTGCCGGTTTTTCGCGAA 60.009 52.632 19.38 19.38 0.00 4.70
2916 3943 0.592754 CTTGCCGGTTTTTCGCGAAA 60.593 50.000 29.22 29.22 0.00 3.46
2917 3944 0.866483 TTGCCGGTTTTTCGCGAAAC 60.866 50.000 32.32 22.69 38.49 2.78
2918 3945 2.351592 GCCGGTTTTTCGCGAAACG 61.352 57.895 32.32 28.98 39.76 3.60
2930 3957 2.031037 GCGAAACGATTTTGTGAGCA 57.969 45.000 0.00 0.00 0.00 4.26
2931 3958 2.584791 GCGAAACGATTTTGTGAGCAT 58.415 42.857 0.00 0.00 0.00 3.79
2932 3959 2.339400 GCGAAACGATTTTGTGAGCATG 59.661 45.455 0.00 0.00 0.00 4.06
2933 3960 3.554524 CGAAACGATTTTGTGAGCATGT 58.445 40.909 0.00 0.00 0.00 3.21
2934 3961 4.707563 CGAAACGATTTTGTGAGCATGTA 58.292 39.130 0.00 0.00 0.00 2.29
2935 3962 4.549599 CGAAACGATTTTGTGAGCATGTAC 59.450 41.667 0.00 0.00 0.00 2.90
2936 3963 5.431420 AAACGATTTTGTGAGCATGTACA 57.569 34.783 0.00 0.00 0.00 2.90
2937 3964 5.431420 AACGATTTTGTGAGCATGTACAA 57.569 34.783 0.00 7.82 35.20 2.41
2938 3965 5.627499 ACGATTTTGTGAGCATGTACAAT 57.373 34.783 0.00 0.00 36.75 2.71
2939 3966 6.735678 ACGATTTTGTGAGCATGTACAATA 57.264 33.333 0.00 8.38 36.75 1.90
2940 3967 7.320443 ACGATTTTGTGAGCATGTACAATAT 57.680 32.000 0.00 11.62 36.75 1.28
2941 3968 7.409697 ACGATTTTGTGAGCATGTACAATATC 58.590 34.615 19.93 19.93 39.60 1.63
2942 3969 7.827156 GATTTTGTGAGCATGTACAATATCG 57.173 36.000 17.62 0.00 36.37 2.92
2943 3970 6.976636 TTTTGTGAGCATGTACAATATCGA 57.023 33.333 0.00 0.00 36.75 3.59
2944 3971 6.588348 TTTGTGAGCATGTACAATATCGAG 57.412 37.500 0.00 0.00 36.75 4.04
2945 3972 5.514274 TGTGAGCATGTACAATATCGAGA 57.486 39.130 0.00 0.00 0.00 4.04
2946 3973 6.089249 TGTGAGCATGTACAATATCGAGAT 57.911 37.500 0.00 0.00 0.00 2.75
2947 3974 5.922544 TGTGAGCATGTACAATATCGAGATG 59.077 40.000 0.00 0.00 0.00 2.90
2948 3975 5.923114 GTGAGCATGTACAATATCGAGATGT 59.077 40.000 0.00 0.00 0.00 3.06
2949 3976 7.084486 GTGAGCATGTACAATATCGAGATGTA 58.916 38.462 0.00 0.00 0.00 2.29
2950 3977 7.061210 GTGAGCATGTACAATATCGAGATGTAC 59.939 40.741 21.81 21.81 46.01 2.90
2954 3981 2.316792 ACAATATCGAGATGTACGCGC 58.683 47.619 5.73 0.00 41.27 6.86
2955 3982 2.031069 ACAATATCGAGATGTACGCGCT 60.031 45.455 5.73 0.00 41.27 5.92
2956 3983 3.187842 ACAATATCGAGATGTACGCGCTA 59.812 43.478 5.73 0.00 41.27 4.26
2957 3984 4.156182 CAATATCGAGATGTACGCGCTAA 58.844 43.478 5.73 0.00 41.27 3.09
2958 3985 2.768833 ATCGAGATGTACGCGCTAAA 57.231 45.000 5.73 0.00 41.27 1.85
2959 3986 2.768833 TCGAGATGTACGCGCTAAAT 57.231 45.000 5.73 0.00 41.27 1.40
2960 3987 3.074504 TCGAGATGTACGCGCTAAATT 57.925 42.857 5.73 0.00 41.27 1.82
2961 3988 3.441163 TCGAGATGTACGCGCTAAATTT 58.559 40.909 5.73 0.00 41.27 1.82
2962 3989 3.861113 TCGAGATGTACGCGCTAAATTTT 59.139 39.130 5.73 0.00 41.27 1.82
2963 3990 4.327898 TCGAGATGTACGCGCTAAATTTTT 59.672 37.500 5.73 0.00 41.27 1.94
2964 3991 4.430118 CGAGATGTACGCGCTAAATTTTTG 59.570 41.667 5.73 0.00 34.86 2.44
2965 3992 5.291293 AGATGTACGCGCTAAATTTTTGT 57.709 34.783 5.73 0.00 0.00 2.83
2966 3993 5.695818 AGATGTACGCGCTAAATTTTTGTT 58.304 33.333 5.73 0.00 0.00 2.83
2967 3994 6.146898 AGATGTACGCGCTAAATTTTTGTTT 58.853 32.000 5.73 0.00 0.00 2.83
2968 3995 5.547716 TGTACGCGCTAAATTTTTGTTTG 57.452 34.783 5.73 0.00 0.00 2.93
2969 3996 5.271625 TGTACGCGCTAAATTTTTGTTTGA 58.728 33.333 5.73 0.00 0.00 2.69
2970 3997 5.742453 TGTACGCGCTAAATTTTTGTTTGAA 59.258 32.000 5.73 0.00 0.00 2.69
2971 3998 5.704217 ACGCGCTAAATTTTTGTTTGAAA 57.296 30.435 5.73 0.00 0.00 2.69
2972 3999 6.280537 ACGCGCTAAATTTTTGTTTGAAAT 57.719 29.167 5.73 0.00 0.00 2.17
2973 4000 6.710611 ACGCGCTAAATTTTTGTTTGAAATT 58.289 28.000 5.73 0.00 38.09 1.82
2974 4001 7.183433 ACGCGCTAAATTTTTGTTTGAAATTT 58.817 26.923 5.73 11.01 44.44 1.82
2975 4002 7.694367 ACGCGCTAAATTTTTGTTTGAAATTTT 59.306 25.926 5.73 3.92 41.44 1.82
2976 4003 8.519459 CGCGCTAAATTTTTGTTTGAAATTTTT 58.481 25.926 5.56 0.00 41.44 1.94
3023 4050 9.869757 ATAACATATTTTAAAAACCAGGAGCAC 57.130 29.630 4.44 0.00 0.00 4.40
3024 4051 6.386654 ACATATTTTAAAAACCAGGAGCACG 58.613 36.000 4.44 0.00 0.00 5.34
3025 4052 2.785713 TTTAAAAACCAGGAGCACGC 57.214 45.000 0.00 0.00 0.00 5.34
3026 4053 0.589223 TTAAAAACCAGGAGCACGCG 59.411 50.000 3.53 3.53 0.00 6.01
3027 4054 1.847890 TAAAAACCAGGAGCACGCGC 61.848 55.000 5.73 0.00 38.99 6.86
3144 4172 0.102300 GAACTTTGGGCGCAACAGTT 59.898 50.000 27.55 27.55 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 4.735132 TACAGGCACGCGTGGAGC 62.735 66.667 37.47 24.81 43.95 4.70
75 76 2.166829 GAGGAGCTTGTGAGAGACAGA 58.833 52.381 0.00 0.00 35.44 3.41
123 128 2.221906 GATGCTTGGCCTGGTTGCTG 62.222 60.000 3.32 0.00 0.00 4.41
136 141 6.978659 TCGAATTAAGATACTCGTTGATGCTT 59.021 34.615 0.00 0.00 33.15 3.91
180 207 6.909550 AAGGCATGTTTTGTACTTATTGGA 57.090 33.333 0.00 0.00 0.00 3.53
268 304 2.216046 CAGGTTGATGGATCGGACATG 58.784 52.381 0.00 0.00 0.00 3.21
271 307 1.154205 CGCAGGTTGATGGATCGGAC 61.154 60.000 0.00 0.00 0.00 4.79
334 372 5.309806 AGGACCTCCCACATAACATAATACC 59.690 44.000 0.00 0.00 37.41 2.73
392 430 5.660417 CCACCATCCAGATATACTAGCAGAT 59.340 44.000 0.00 0.00 0.00 2.90
393 431 5.019470 CCACCATCCAGATATACTAGCAGA 58.981 45.833 0.00 0.00 0.00 4.26
500 541 1.112950 TTGGACGGTGTGTGTAGTGA 58.887 50.000 0.00 0.00 0.00 3.41
501 542 1.942677 TTTGGACGGTGTGTGTAGTG 58.057 50.000 0.00 0.00 0.00 2.74
502 543 2.679336 GTTTTTGGACGGTGTGTGTAGT 59.321 45.455 0.00 0.00 0.00 2.73
503 544 2.940410 AGTTTTTGGACGGTGTGTGTAG 59.060 45.455 0.00 0.00 0.00 2.74
504 545 2.988570 AGTTTTTGGACGGTGTGTGTA 58.011 42.857 0.00 0.00 0.00 2.90
505 546 1.828979 AGTTTTTGGACGGTGTGTGT 58.171 45.000 0.00 0.00 0.00 3.72
506 547 2.940410 ACTAGTTTTTGGACGGTGTGTG 59.060 45.455 0.00 0.00 0.00 3.82
627 670 7.114529 CACCTAATAGCTACTATTTCGGTTTCG 59.885 40.741 13.77 5.11 37.14 3.46
691 734 7.607991 TCTTTTAGGAGAAAAATCTAGGTGCTG 59.392 37.037 0.00 0.00 0.00 4.41
693 736 7.923414 TCTTTTAGGAGAAAAATCTAGGTGC 57.077 36.000 0.00 0.00 0.00 5.01
702 745 9.354673 ACAGACATCATTCTTTTAGGAGAAAAA 57.645 29.630 0.00 0.00 38.98 1.94
737 780 9.480053 GTACCCGTACATACAATACAATACAAT 57.520 33.333 0.06 0.00 36.15 2.71
738 781 7.647318 CGTACCCGTACATACAATACAATACAA 59.353 37.037 5.88 0.00 35.87 2.41
803 846 3.084786 GGGATTTAGGATGGCATAGCAC 58.915 50.000 0.00 0.00 0.00 4.40
804 847 2.715880 TGGGATTTAGGATGGCATAGCA 59.284 45.455 0.00 0.00 0.00 3.49
805 848 3.439857 TGGGATTTAGGATGGCATAGC 57.560 47.619 0.00 0.00 0.00 2.97
806 849 4.159135 GCAATGGGATTTAGGATGGCATAG 59.841 45.833 0.00 0.00 0.00 2.23
807 850 4.088634 GCAATGGGATTTAGGATGGCATA 58.911 43.478 0.00 0.00 0.00 3.14
957 1012 0.040870 ATCAGACGACGATGCTAGCG 60.041 55.000 10.77 0.00 0.00 4.26
981 1036 4.176752 GCCAGACCACCCCGATCC 62.177 72.222 0.00 0.00 0.00 3.36
987 1042 1.379044 CTCCATTGCCAGACCACCC 60.379 63.158 0.00 0.00 0.00 4.61
1190 1277 0.538516 AGCTCTACAGGATCGGCGAT 60.539 55.000 24.26 24.26 0.00 4.58
1191 1278 1.152943 AGCTCTACAGGATCGGCGA 60.153 57.895 13.87 13.87 0.00 5.54
1193 1280 1.167155 TCGAGCTCTACAGGATCGGC 61.167 60.000 12.85 0.00 34.29 5.54
1194 1281 1.198867 CATCGAGCTCTACAGGATCGG 59.801 57.143 12.85 0.00 34.29 4.18
1196 1283 2.235016 ACCATCGAGCTCTACAGGATC 58.765 52.381 12.85 0.00 0.00 3.36
1197 1284 2.373335 ACCATCGAGCTCTACAGGAT 57.627 50.000 12.85 3.63 0.00 3.24
1198 1285 2.145397 AACCATCGAGCTCTACAGGA 57.855 50.000 12.85 1.00 0.00 3.86
1220 1307 2.415893 CCTCCATTAACCGCTGCAAAAG 60.416 50.000 0.00 0.00 0.00 2.27
1221 1308 1.543802 CCTCCATTAACCGCTGCAAAA 59.456 47.619 0.00 0.00 0.00 2.44
1223 1310 1.312371 GCCTCCATTAACCGCTGCAA 61.312 55.000 0.00 0.00 0.00 4.08
1224 1311 1.748879 GCCTCCATTAACCGCTGCA 60.749 57.895 0.00 0.00 0.00 4.41
1225 1312 1.452108 AGCCTCCATTAACCGCTGC 60.452 57.895 0.00 0.00 0.00 5.25
1229 1316 0.810031 CGGTCAGCCTCCATTAACCG 60.810 60.000 0.00 0.00 42.97 4.44
1263 1350 1.364626 CGCACCTCTCTGCCATCAAC 61.365 60.000 0.00 0.00 33.18 3.18
1488 1605 4.124351 CGGCCGCGGTAGAAGACA 62.124 66.667 28.70 0.00 0.00 3.41
1542 1659 1.681327 GGACTGGAGGCGGTACTCA 60.681 63.158 0.00 0.00 39.27 3.41
1679 1815 4.128925 TCCTCCTGAACGATCAAATCAG 57.871 45.455 10.81 10.81 40.17 2.90
1944 2080 1.985116 GAAGGTCGGGCTCTGGAGT 60.985 63.158 0.00 0.00 0.00 3.85
2031 2167 4.479993 ATCGTCCCAGCAGCAGCC 62.480 66.667 0.00 0.00 43.56 4.85
2164 2300 8.043113 TCTGAATCCTCCGGATCAAATATTATG 58.957 37.037 3.57 0.00 42.27 1.90
2476 3084 1.076332 ATCGCTCTTTACGTGCCAAC 58.924 50.000 0.00 0.00 0.00 3.77
2502 3112 6.146837 TGTGTTGACAAAATTCCAAACAACTG 59.853 34.615 0.00 0.00 37.56 3.16
2545 3155 8.487028 ACAGGAGTAAGAAGAAAGAAAGAAAGA 58.513 33.333 0.00 0.00 0.00 2.52
2546 3156 8.669946 ACAGGAGTAAGAAGAAAGAAAGAAAG 57.330 34.615 0.00 0.00 0.00 2.62
2547 3157 9.462606 AAACAGGAGTAAGAAGAAAGAAAGAAA 57.537 29.630 0.00 0.00 0.00 2.52
2548 3158 9.110502 GAAACAGGAGTAAGAAGAAAGAAAGAA 57.889 33.333 0.00 0.00 0.00 2.52
2590 3617 7.526142 AAGTCAATTTTAAGGGAGAAGGAAC 57.474 36.000 0.00 0.00 0.00 3.62
2609 3636 9.834628 GACCGAATTTGTAATTTTCATAAGTCA 57.165 29.630 0.00 0.00 0.00 3.41
2656 3683 2.053627 GTGTGCCAAAGCGAATTTCTG 58.946 47.619 0.00 0.00 44.31 3.02
2657 3684 1.334960 CGTGTGCCAAAGCGAATTTCT 60.335 47.619 0.00 0.00 44.31 2.52
2658 3685 1.052287 CGTGTGCCAAAGCGAATTTC 58.948 50.000 0.00 0.00 44.31 2.17
2659 3686 0.318614 CCGTGTGCCAAAGCGAATTT 60.319 50.000 0.00 0.00 44.31 1.82
2660 3687 1.285641 CCGTGTGCCAAAGCGAATT 59.714 52.632 0.00 0.00 44.31 2.17
2661 3688 2.625823 CCCGTGTGCCAAAGCGAAT 61.626 57.895 0.00 0.00 44.31 3.34
2662 3689 3.283684 CCCGTGTGCCAAAGCGAA 61.284 61.111 0.00 0.00 44.31 4.70
2663 3690 4.243008 TCCCGTGTGCCAAAGCGA 62.243 61.111 0.00 0.00 44.31 4.93
2664 3691 3.726517 CTCCCGTGTGCCAAAGCG 61.727 66.667 0.00 0.00 44.31 4.68
2665 3692 2.594592 ACTCCCGTGTGCCAAAGC 60.595 61.111 0.00 0.00 40.48 3.51
2666 3693 2.260869 CCACTCCCGTGTGCCAAAG 61.261 63.158 0.00 0.00 39.55 2.77
2667 3694 2.203280 CCACTCCCGTGTGCCAAA 60.203 61.111 0.00 0.00 39.55 3.28
2668 3695 3.164977 TCCACTCCCGTGTGCCAA 61.165 61.111 0.00 0.00 39.55 4.52
2669 3696 3.625897 CTCCACTCCCGTGTGCCA 61.626 66.667 0.00 0.00 39.55 4.92
2690 3717 4.704833 TTCTGGTGGCAGGAGCGC 62.705 66.667 0.00 0.00 43.41 5.92
2691 3718 1.172180 TTTTTCTGGTGGCAGGAGCG 61.172 55.000 0.00 0.00 43.41 5.03
2692 3719 2.732289 TTTTTCTGGTGGCAGGAGC 58.268 52.632 0.00 0.00 41.10 4.70
2708 3735 9.325198 GGATTTTTCCACACTTTGAAGTATTTT 57.675 29.630 0.00 0.00 37.08 1.82
2709 3736 7.651704 CGGATTTTTCCACACTTTGAAGTATTT 59.348 33.333 0.00 0.00 37.08 1.40
2710 3737 7.013846 TCGGATTTTTCCACACTTTGAAGTATT 59.986 33.333 0.00 0.00 37.08 1.89
2711 3738 6.488683 TCGGATTTTTCCACACTTTGAAGTAT 59.511 34.615 0.00 0.00 37.08 2.12
2712 3739 5.823570 TCGGATTTTTCCACACTTTGAAGTA 59.176 36.000 0.00 0.00 37.08 2.24
2713 3740 4.642885 TCGGATTTTTCCACACTTTGAAGT 59.357 37.500 0.00 0.00 40.60 3.01
2714 3741 5.008613 TCTCGGATTTTTCCACACTTTGAAG 59.991 40.000 0.00 0.00 0.00 3.02
2715 3742 4.884744 TCTCGGATTTTTCCACACTTTGAA 59.115 37.500 0.00 0.00 0.00 2.69
2716 3743 4.274950 GTCTCGGATTTTTCCACACTTTGA 59.725 41.667 0.00 0.00 0.00 2.69
2717 3744 4.036262 TGTCTCGGATTTTTCCACACTTTG 59.964 41.667 0.00 0.00 0.00 2.77
2718 3745 4.204012 TGTCTCGGATTTTTCCACACTTT 58.796 39.130 0.00 0.00 0.00 2.66
2719 3746 3.815809 TGTCTCGGATTTTTCCACACTT 58.184 40.909 0.00 0.00 0.00 3.16
2720 3747 3.485463 TGTCTCGGATTTTTCCACACT 57.515 42.857 0.00 0.00 0.00 3.55
2721 3748 4.561735 TTTGTCTCGGATTTTTCCACAC 57.438 40.909 0.00 0.00 0.00 3.82
2722 3749 5.584253 TTTTTGTCTCGGATTTTTCCACA 57.416 34.783 0.00 0.00 0.00 4.17
2723 3750 7.344441 CAAATTTTTGTCTCGGATTTTTCCAC 58.656 34.615 0.00 0.00 33.59 4.02
2724 3751 6.481644 CCAAATTTTTGTCTCGGATTTTTCCA 59.518 34.615 2.63 0.00 36.45 3.53
2725 3752 6.481976 ACCAAATTTTTGTCTCGGATTTTTCC 59.518 34.615 2.63 0.00 36.45 3.13
2726 3753 7.344441 CACCAAATTTTTGTCTCGGATTTTTC 58.656 34.615 2.63 0.00 36.45 2.29
2727 3754 6.238347 GCACCAAATTTTTGTCTCGGATTTTT 60.238 34.615 2.63 0.00 36.45 1.94
2728 3755 5.236263 GCACCAAATTTTTGTCTCGGATTTT 59.764 36.000 2.63 0.00 36.45 1.82
2729 3756 4.749598 GCACCAAATTTTTGTCTCGGATTT 59.250 37.500 2.63 0.00 36.45 2.17
2730 3757 4.202202 TGCACCAAATTTTTGTCTCGGATT 60.202 37.500 2.63 0.00 36.45 3.01
2731 3758 3.320541 TGCACCAAATTTTTGTCTCGGAT 59.679 39.130 2.63 0.00 36.45 4.18
2732 3759 2.690497 TGCACCAAATTTTTGTCTCGGA 59.310 40.909 2.63 0.00 36.45 4.55
2733 3760 3.090952 TGCACCAAATTTTTGTCTCGG 57.909 42.857 2.63 0.00 36.45 4.63
2734 3761 5.218885 TGTATGCACCAAATTTTTGTCTCG 58.781 37.500 0.00 0.00 36.45 4.04
2735 3762 7.092716 AGATGTATGCACCAAATTTTTGTCTC 58.907 34.615 0.00 0.00 36.45 3.36
2736 3763 6.996509 AGATGTATGCACCAAATTTTTGTCT 58.003 32.000 0.00 0.00 36.45 3.41
2737 3764 7.384660 TCAAGATGTATGCACCAAATTTTTGTC 59.615 33.333 0.00 0.00 36.45 3.18
2738 3765 7.171337 GTCAAGATGTATGCACCAAATTTTTGT 59.829 33.333 0.00 0.00 36.45 2.83
2739 3766 7.171167 TGTCAAGATGTATGCACCAAATTTTTG 59.829 33.333 0.00 0.00 37.90 2.44
2740 3767 7.215789 TGTCAAGATGTATGCACCAAATTTTT 58.784 30.769 0.00 0.00 0.00 1.94
2741 3768 6.757237 TGTCAAGATGTATGCACCAAATTTT 58.243 32.000 0.00 0.00 0.00 1.82
2742 3769 6.343716 TGTCAAGATGTATGCACCAAATTT 57.656 33.333 0.00 0.00 0.00 1.82
2743 3770 5.981088 TGTCAAGATGTATGCACCAAATT 57.019 34.783 0.00 0.00 0.00 1.82
2744 3771 6.534475 AATGTCAAGATGTATGCACCAAAT 57.466 33.333 0.00 0.00 0.00 2.32
2745 3772 5.981088 AATGTCAAGATGTATGCACCAAA 57.019 34.783 0.00 0.00 0.00 3.28
2746 3773 8.922931 ATATAATGTCAAGATGTATGCACCAA 57.077 30.769 0.00 0.00 0.00 3.67
2747 3774 8.377799 AGATATAATGTCAAGATGTATGCACCA 58.622 33.333 0.00 0.00 0.00 4.17
2748 3775 8.663025 CAGATATAATGTCAAGATGTATGCACC 58.337 37.037 0.00 0.00 0.00 5.01
2749 3776 9.212641 ACAGATATAATGTCAAGATGTATGCAC 57.787 33.333 0.00 0.00 0.00 4.57
2750 3777 9.211485 CACAGATATAATGTCAAGATGTATGCA 57.789 33.333 0.00 0.00 0.00 3.96
2751 3778 8.173775 GCACAGATATAATGTCAAGATGTATGC 58.826 37.037 0.00 0.00 0.00 3.14
2752 3779 9.211485 TGCACAGATATAATGTCAAGATGTATG 57.789 33.333 0.00 0.00 0.00 2.39
2753 3780 9.955102 ATGCACAGATATAATGTCAAGATGTAT 57.045 29.630 0.00 0.00 0.00 2.29
2754 3781 9.211485 CATGCACAGATATAATGTCAAGATGTA 57.789 33.333 0.00 0.00 0.00 2.29
2755 3782 7.718314 ACATGCACAGATATAATGTCAAGATGT 59.282 33.333 0.00 0.00 0.00 3.06
2756 3783 8.095937 ACATGCACAGATATAATGTCAAGATG 57.904 34.615 0.00 0.00 0.00 2.90
2757 3784 8.320396 GACATGCACAGATATAATGTCAAGAT 57.680 34.615 8.75 0.00 44.15 2.40
2758 3785 7.719778 GACATGCACAGATATAATGTCAAGA 57.280 36.000 8.75 0.00 44.15 3.02
2762 3789 7.488187 ACTTGACATGCACAGATATAATGTC 57.512 36.000 7.06 7.06 44.70 3.06
2763 3790 7.870509 AACTTGACATGCACAGATATAATGT 57.129 32.000 0.00 0.00 34.28 2.71
2764 3791 9.016623 CAAAACTTGACATGCACAGATATAATG 57.983 33.333 0.00 0.00 0.00 1.90
2765 3792 8.959548 TCAAAACTTGACATGCACAGATATAAT 58.040 29.630 0.00 0.00 34.08 1.28
2766 3793 8.334263 TCAAAACTTGACATGCACAGATATAA 57.666 30.769 0.00 0.00 34.08 0.98
2767 3794 7.920160 TCAAAACTTGACATGCACAGATATA 57.080 32.000 0.00 0.00 34.08 0.86
2768 3795 6.822667 TCAAAACTTGACATGCACAGATAT 57.177 33.333 0.00 0.00 34.08 1.63
2769 3796 6.486320 TCTTCAAAACTTGACATGCACAGATA 59.514 34.615 0.00 0.00 39.87 1.98
2770 3797 5.300034 TCTTCAAAACTTGACATGCACAGAT 59.700 36.000 0.00 0.00 39.87 2.90
2771 3798 4.639755 TCTTCAAAACTTGACATGCACAGA 59.360 37.500 0.00 0.00 39.87 3.41
2772 3799 4.923893 TCTTCAAAACTTGACATGCACAG 58.076 39.130 0.00 0.00 39.87 3.66
2773 3800 4.979943 TCTTCAAAACTTGACATGCACA 57.020 36.364 0.00 0.00 39.87 4.57
2774 3801 6.645700 TTTTCTTCAAAACTTGACATGCAC 57.354 33.333 0.00 0.00 39.87 4.57
2775 3802 6.198778 CGATTTTCTTCAAAACTTGACATGCA 59.801 34.615 0.00 0.00 39.87 3.96
2776 3803 6.198966 ACGATTTTCTTCAAAACTTGACATGC 59.801 34.615 0.00 0.00 39.87 4.06
2777 3804 7.431960 TGACGATTTTCTTCAAAACTTGACATG 59.568 33.333 0.00 0.00 39.87 3.21
2778 3805 7.479980 TGACGATTTTCTTCAAAACTTGACAT 58.520 30.769 0.00 0.00 39.87 3.06
2779 3806 6.847400 TGACGATTTTCTTCAAAACTTGACA 58.153 32.000 0.00 0.00 39.87 3.58
2780 3807 7.914537 ATGACGATTTTCTTCAAAACTTGAC 57.085 32.000 0.00 0.00 39.87 3.18
2781 3808 8.925161 AAATGACGATTTTCTTCAAAACTTGA 57.075 26.923 0.00 0.00 34.24 3.02
2794 3821 4.853924 AGCCACAGAAAATGACGATTTT 57.146 36.364 0.00 0.00 43.20 1.82
2795 3822 4.037923 ACAAGCCACAGAAAATGACGATTT 59.962 37.500 0.00 0.00 32.87 2.17
2796 3823 3.569701 ACAAGCCACAGAAAATGACGATT 59.430 39.130 0.00 0.00 0.00 3.34
2797 3824 3.058016 CACAAGCCACAGAAAATGACGAT 60.058 43.478 0.00 0.00 0.00 3.73
2798 3825 2.290367 CACAAGCCACAGAAAATGACGA 59.710 45.455 0.00 0.00 0.00 4.20
2799 3826 2.033299 ACACAAGCCACAGAAAATGACG 59.967 45.455 0.00 0.00 0.00 4.35
2800 3827 3.715628 ACACAAGCCACAGAAAATGAC 57.284 42.857 0.00 0.00 0.00 3.06
2801 3828 5.843673 TTTACACAAGCCACAGAAAATGA 57.156 34.783 0.00 0.00 0.00 2.57
2802 3829 6.900568 TTTTTACACAAGCCACAGAAAATG 57.099 33.333 0.00 0.00 0.00 2.32
2826 3853 9.979578 TGCTTTTCACAAGACATATTTTTGTAT 57.020 25.926 0.00 0.00 33.57 2.29
2827 3854 9.243637 GTGCTTTTCACAAGACATATTTTTGTA 57.756 29.630 0.00 0.00 44.98 2.41
2828 3855 8.130307 GTGCTTTTCACAAGACATATTTTTGT 57.870 30.769 0.00 0.00 44.98 2.83
2843 3870 7.985634 TCTGATGTTAAAAAGTGCTTTTCAC 57.014 32.000 9.94 10.22 41.45 3.18
2844 3871 9.598517 AAATCTGATGTTAAAAAGTGCTTTTCA 57.401 25.926 9.94 5.37 41.45 2.69
2847 3874 9.382275 ACAAAATCTGATGTTAAAAAGTGCTTT 57.618 25.926 0.00 0.00 0.00 3.51
2848 3875 8.947055 ACAAAATCTGATGTTAAAAAGTGCTT 57.053 26.923 0.00 0.00 0.00 3.91
2849 3876 8.947055 AACAAAATCTGATGTTAAAAAGTGCT 57.053 26.923 0.00 0.00 37.96 4.40
2850 3877 9.986833 AAAACAAAATCTGATGTTAAAAAGTGC 57.013 25.926 0.00 0.00 38.75 4.40
2860 3887 9.019764 CGTGTAAAGAAAAACAAAATCTGATGT 57.980 29.630 0.00 0.00 0.00 3.06
2861 3888 9.019764 ACGTGTAAAGAAAAACAAAATCTGATG 57.980 29.630 0.00 0.00 0.00 3.07
2862 3889 9.581099 AACGTGTAAAGAAAAACAAAATCTGAT 57.419 25.926 0.00 0.00 0.00 2.90
2863 3890 8.973835 AACGTGTAAAGAAAAACAAAATCTGA 57.026 26.923 0.00 0.00 0.00 3.27
2865 3892 9.843334 TGTAACGTGTAAAGAAAAACAAAATCT 57.157 25.926 0.00 0.00 0.00 2.40
2866 3893 9.875660 GTGTAACGTGTAAAGAAAAACAAAATC 57.124 29.630 0.00 0.00 0.00 2.17
2867 3894 9.408069 TGTGTAACGTGTAAAGAAAAACAAAAT 57.592 25.926 0.00 0.00 42.39 1.82
2868 3895 8.792831 TGTGTAACGTGTAAAGAAAAACAAAA 57.207 26.923 0.00 0.00 42.39 2.44
2869 3896 8.967552 ATGTGTAACGTGTAAAGAAAAACAAA 57.032 26.923 0.00 0.00 42.39 2.83
2871 3898 9.488124 GTTATGTGTAACGTGTAAAGAAAAACA 57.512 29.630 0.00 0.00 42.39 2.83
2872 3899 9.706846 AGTTATGTGTAACGTGTAAAGAAAAAC 57.293 29.630 0.00 0.00 43.92 2.43
2874 3901 9.705471 CAAGTTATGTGTAACGTGTAAAGAAAA 57.295 29.630 0.00 0.00 43.92 2.29
2875 3902 7.851963 GCAAGTTATGTGTAACGTGTAAAGAAA 59.148 33.333 13.10 0.00 45.83 2.52
2876 3903 7.346695 GCAAGTTATGTGTAACGTGTAAAGAA 58.653 34.615 13.10 0.00 45.83 2.52
2877 3904 6.073657 GGCAAGTTATGTGTAACGTGTAAAGA 60.074 38.462 13.10 0.00 45.83 2.52
2878 3905 6.075280 GGCAAGTTATGTGTAACGTGTAAAG 58.925 40.000 13.10 0.00 45.83 1.85
2879 3906 5.333187 CGGCAAGTTATGTGTAACGTGTAAA 60.333 40.000 13.10 0.00 45.83 2.01
2880 3907 4.150274 CGGCAAGTTATGTGTAACGTGTAA 59.850 41.667 13.10 0.00 45.83 2.41
2881 3908 3.674281 CGGCAAGTTATGTGTAACGTGTA 59.326 43.478 13.10 0.00 45.83 2.90
2882 3909 2.477375 CGGCAAGTTATGTGTAACGTGT 59.523 45.455 13.10 0.00 45.83 4.49
2883 3910 2.159761 CCGGCAAGTTATGTGTAACGTG 60.160 50.000 9.03 9.03 46.41 4.49
2884 3911 2.070783 CCGGCAAGTTATGTGTAACGT 58.929 47.619 0.00 0.00 43.92 3.99
2885 3912 2.070783 ACCGGCAAGTTATGTGTAACG 58.929 47.619 0.00 0.00 43.92 3.18
2886 3913 4.492791 AAACCGGCAAGTTATGTGTAAC 57.507 40.909 0.00 0.00 40.40 2.50
2887 3914 5.517322 AAAAACCGGCAAGTTATGTGTAA 57.483 34.783 0.00 0.00 0.00 2.41
2888 3915 4.319622 CGAAAAACCGGCAAGTTATGTGTA 60.320 41.667 0.00 0.00 0.00 2.90
2889 3916 3.549221 CGAAAAACCGGCAAGTTATGTGT 60.549 43.478 0.00 0.00 0.00 3.72
2890 3917 2.977169 CGAAAAACCGGCAAGTTATGTG 59.023 45.455 0.00 0.00 0.00 3.21
2891 3918 2.606065 GCGAAAAACCGGCAAGTTATGT 60.606 45.455 0.00 0.00 0.00 2.29
2892 3919 1.982913 GCGAAAAACCGGCAAGTTATG 59.017 47.619 0.00 0.00 0.00 1.90
2893 3920 1.400500 CGCGAAAAACCGGCAAGTTAT 60.400 47.619 0.00 0.00 0.00 1.89
2894 3921 0.041135 CGCGAAAAACCGGCAAGTTA 60.041 50.000 0.00 0.00 0.00 2.24
2895 3922 1.298788 CGCGAAAAACCGGCAAGTT 60.299 52.632 0.00 0.00 0.00 2.66
2896 3923 1.716826 TTCGCGAAAAACCGGCAAGT 61.717 50.000 21.14 0.00 0.00 3.16
2897 3924 0.592754 TTTCGCGAAAAACCGGCAAG 60.593 50.000 30.57 0.00 0.00 4.01
2898 3925 0.866483 GTTTCGCGAAAAACCGGCAA 60.866 50.000 33.69 7.97 33.86 4.52
2899 3926 1.298488 GTTTCGCGAAAAACCGGCA 60.298 52.632 33.69 8.76 33.86 5.69
2900 3927 2.351592 CGTTTCGCGAAAAACCGGC 61.352 57.895 33.69 19.60 44.77 6.13
2901 3928 3.804656 CGTTTCGCGAAAAACCGG 58.195 55.556 33.69 17.23 44.77 5.28
2910 3937 0.967803 GCTCACAAAATCGTTTCGCG 59.032 50.000 0.00 0.00 43.01 5.87
2911 3938 2.031037 TGCTCACAAAATCGTTTCGC 57.969 45.000 0.00 0.00 0.00 4.70
2912 3939 3.554524 ACATGCTCACAAAATCGTTTCG 58.445 40.909 0.00 0.00 0.00 3.46
2913 3940 5.448438 TGTACATGCTCACAAAATCGTTTC 58.552 37.500 0.00 0.00 0.00 2.78
2914 3941 5.431420 TGTACATGCTCACAAAATCGTTT 57.569 34.783 0.00 0.00 0.00 3.60
2915 3942 5.431420 TTGTACATGCTCACAAAATCGTT 57.569 34.783 0.00 0.00 31.93 3.85
2916 3943 5.627499 ATTGTACATGCTCACAAAATCGT 57.373 34.783 10.93 0.00 38.11 3.73
2917 3944 6.571154 CGATATTGTACATGCTCACAAAATCG 59.429 38.462 10.93 9.10 38.11 3.34
2918 3945 7.630026 TCGATATTGTACATGCTCACAAAATC 58.370 34.615 10.93 3.16 38.11 2.17
2919 3946 7.495606 TCTCGATATTGTACATGCTCACAAAAT 59.504 33.333 10.93 1.26 38.11 1.82
2920 3947 6.816140 TCTCGATATTGTACATGCTCACAAAA 59.184 34.615 10.93 0.00 38.11 2.44
2921 3948 6.337356 TCTCGATATTGTACATGCTCACAAA 58.663 36.000 10.93 3.76 38.11 2.83
2922 3949 5.901552 TCTCGATATTGTACATGCTCACAA 58.098 37.500 9.69 9.69 38.89 3.33
2923 3950 5.514274 TCTCGATATTGTACATGCTCACA 57.486 39.130 0.00 0.00 0.00 3.58
2924 3951 5.923114 ACATCTCGATATTGTACATGCTCAC 59.077 40.000 0.00 0.00 0.00 3.51
2925 3952 6.089249 ACATCTCGATATTGTACATGCTCA 57.911 37.500 0.00 0.00 0.00 4.26
2926 3953 6.249471 CGTACATCTCGATATTGTACATGCTC 59.751 42.308 22.09 0.00 43.67 4.26
2927 3954 6.086871 CGTACATCTCGATATTGTACATGCT 58.913 40.000 22.09 0.00 43.67 3.79
2928 3955 5.220043 GCGTACATCTCGATATTGTACATGC 60.220 44.000 22.09 17.12 43.67 4.06
2929 3956 5.002561 CGCGTACATCTCGATATTGTACATG 59.997 44.000 22.09 14.42 43.67 3.21
2930 3957 5.086727 CGCGTACATCTCGATATTGTACAT 58.913 41.667 22.09 0.00 43.67 2.29
2931 3958 4.460505 CGCGTACATCTCGATATTGTACA 58.539 43.478 22.09 0.00 43.67 2.90
2932 3959 3.297461 GCGCGTACATCTCGATATTGTAC 59.703 47.826 8.43 16.64 41.33 2.90
2933 3960 3.187842 AGCGCGTACATCTCGATATTGTA 59.812 43.478 8.43 0.00 0.00 2.41
2934 3961 2.031069 AGCGCGTACATCTCGATATTGT 60.031 45.455 8.43 0.00 0.00 2.71
2935 3962 2.585845 AGCGCGTACATCTCGATATTG 58.414 47.619 8.43 0.00 0.00 1.90
2936 3963 2.991434 AGCGCGTACATCTCGATATT 57.009 45.000 8.43 0.00 0.00 1.28
2937 3964 4.414999 TTTAGCGCGTACATCTCGATAT 57.585 40.909 8.43 0.00 0.00 1.63
2938 3965 3.883631 TTTAGCGCGTACATCTCGATA 57.116 42.857 8.43 0.00 0.00 2.92
2939 3966 2.768833 TTTAGCGCGTACATCTCGAT 57.231 45.000 8.43 0.00 0.00 3.59
2940 3967 2.768833 ATTTAGCGCGTACATCTCGA 57.231 45.000 8.43 0.00 0.00 4.04
2941 3968 3.836229 AAATTTAGCGCGTACATCTCG 57.164 42.857 8.43 0.00 0.00 4.04
2942 3969 5.321516 ACAAAAATTTAGCGCGTACATCTC 58.678 37.500 8.43 0.00 0.00 2.75
2943 3970 5.291293 ACAAAAATTTAGCGCGTACATCT 57.709 34.783 8.43 0.00 0.00 2.90
2944 3971 5.985526 AACAAAAATTTAGCGCGTACATC 57.014 34.783 8.43 0.00 0.00 3.06
2945 3972 5.915758 TCAAACAAAAATTTAGCGCGTACAT 59.084 32.000 8.43 0.00 0.00 2.29
2946 3973 5.271625 TCAAACAAAAATTTAGCGCGTACA 58.728 33.333 8.43 0.00 0.00 2.90
2947 3974 5.793023 TCAAACAAAAATTTAGCGCGTAC 57.207 34.783 8.43 0.00 0.00 3.67
2948 3975 6.807708 TTTCAAACAAAAATTTAGCGCGTA 57.192 29.167 8.43 0.00 0.00 4.42
2949 3976 5.704217 TTTCAAACAAAAATTTAGCGCGT 57.296 30.435 8.43 0.00 0.00 6.01
2950 3977 7.587803 AAATTTCAAACAAAAATTTAGCGCG 57.412 28.000 0.00 0.00 41.89 6.86
2997 4024 9.869757 GTGCTCCTGGTTTTTAAAATATGTTAT 57.130 29.630 0.55 0.00 0.00 1.89
2998 4025 8.024285 CGTGCTCCTGGTTTTTAAAATATGTTA 58.976 33.333 0.55 0.00 0.00 2.41
2999 4026 6.866248 CGTGCTCCTGGTTTTTAAAATATGTT 59.134 34.615 0.55 0.00 0.00 2.71
3000 4027 6.386654 CGTGCTCCTGGTTTTTAAAATATGT 58.613 36.000 0.55 0.00 0.00 2.29
3001 4028 5.288472 GCGTGCTCCTGGTTTTTAAAATATG 59.712 40.000 0.55 0.00 0.00 1.78
3002 4029 5.407502 GCGTGCTCCTGGTTTTTAAAATAT 58.592 37.500 0.55 0.00 0.00 1.28
3003 4030 4.614078 CGCGTGCTCCTGGTTTTTAAAATA 60.614 41.667 0.55 0.00 0.00 1.40
3004 4031 3.649073 GCGTGCTCCTGGTTTTTAAAAT 58.351 40.909 0.55 0.00 0.00 1.82
3005 4032 2.541999 CGCGTGCTCCTGGTTTTTAAAA 60.542 45.455 0.00 0.00 0.00 1.52
3006 4033 1.002251 CGCGTGCTCCTGGTTTTTAAA 60.002 47.619 0.00 0.00 0.00 1.52
3007 4034 0.589223 CGCGTGCTCCTGGTTTTTAA 59.411 50.000 0.00 0.00 0.00 1.52
3008 4035 1.847890 GCGCGTGCTCCTGGTTTTTA 61.848 55.000 15.02 0.00 38.39 1.52
3009 4036 3.030652 CGCGTGCTCCTGGTTTTT 58.969 55.556 0.00 0.00 0.00 1.94
3010 4037 3.660111 GCGCGTGCTCCTGGTTTT 61.660 61.111 15.02 0.00 38.39 2.43
3029 4056 2.852495 ATAAGTCTGCGGCACACGGG 62.852 60.000 0.00 0.00 44.51 5.28
3030 4057 0.179121 TATAAGTCTGCGGCACACGG 60.179 55.000 0.00 0.00 44.51 4.94
3032 4059 3.194861 TCAATATAAGTCTGCGGCACAC 58.805 45.455 0.00 0.00 0.00 3.82
3033 4060 3.535280 TCAATATAAGTCTGCGGCACA 57.465 42.857 0.00 0.00 0.00 4.57
3034 4061 4.310769 AGATCAATATAAGTCTGCGGCAC 58.689 43.478 0.00 0.00 0.00 5.01
3035 4062 4.607293 AGATCAATATAAGTCTGCGGCA 57.393 40.909 1.29 1.29 0.00 5.69
3036 4063 4.390297 GGAAGATCAATATAAGTCTGCGGC 59.610 45.833 0.00 0.00 0.00 6.53
3037 4064 4.623167 CGGAAGATCAATATAAGTCTGCGG 59.377 45.833 0.00 0.00 0.00 5.69
3038 4065 4.090642 GCGGAAGATCAATATAAGTCTGCG 59.909 45.833 0.00 0.00 0.00 5.18
3039 4066 4.991056 TGCGGAAGATCAATATAAGTCTGC 59.009 41.667 0.00 0.00 36.63 4.26
3040 4067 8.815189 CATATGCGGAAGATCAATATAAGTCTG 58.185 37.037 0.00 0.00 0.00 3.51
3041 4068 8.535335 ACATATGCGGAAGATCAATATAAGTCT 58.465 33.333 1.58 0.00 0.00 3.24
3105 4133 2.090324 TCATGGATCCTCTGTCCTCCAT 60.090 50.000 14.23 0.00 46.84 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.