Multiple sequence alignment - TraesCS7A01G324800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G324800 chr7A 100.000 4117 0 0 1 4117 472193993 472198109 0.000000e+00 7603.0
1 TraesCS7A01G324800 chr7D 94.200 2138 68 25 1439 3537 411306999 411309119 0.000000e+00 3210.0
2 TraesCS7A01G324800 chr7D 92.665 968 30 10 454 1399 411306063 411307011 0.000000e+00 1356.0
3 TraesCS7A01G324800 chr7D 85.305 279 27 7 3844 4117 411309908 411310177 4.050000e-70 276.0
4 TraesCS7A01G324800 chr7D 89.908 109 6 3 3516 3619 411309788 411309896 7.180000e-28 135.0
5 TraesCS7A01G324800 chr7D 94.231 52 3 0 3715 3766 29804904 29804853 3.410000e-11 80.5
6 TraesCS7A01G324800 chr7D 92.593 54 2 1 3715 3768 136129717 136129768 4.410000e-10 76.8
7 TraesCS7A01G324800 chr7B 93.914 2136 80 22 1466 3578 425715817 425717925 0.000000e+00 3179.0
8 TraesCS7A01G324800 chr7B 94.002 967 33 7 454 1399 425713534 425714496 0.000000e+00 1441.0
9 TraesCS7A01G324800 chr7B 99.342 456 3 0 1 456 4611799 4611344 0.000000e+00 826.0
10 TraesCS7A01G324800 chr7B 86.694 248 23 2 3873 4117 425720444 425720684 2.440000e-67 267.0
11 TraesCS7A01G324800 chr7B 98.148 54 1 0 3715 3768 648198472 648198525 1.220000e-15 95.3
12 TraesCS7A01G324800 chr7B 100.000 43 0 0 1439 1481 425714484 425714526 3.410000e-11 80.5
13 TraesCS7A01G324800 chr7B 85.135 74 7 3 3753 3825 530674827 530674757 5.710000e-09 73.1
14 TraesCS7A01G324800 chr7B 87.097 62 6 2 3768 3829 188410787 188410728 7.380000e-08 69.4
15 TraesCS7A01G324800 chr3B 99.121 455 4 0 1 455 125528671 125529125 0.000000e+00 819.0
16 TraesCS7A01G324800 chr3B 99.117 453 4 0 1 453 239886797 239886345 0.000000e+00 815.0
17 TraesCS7A01G324800 chr3B 97.572 453 10 1 1 453 797466229 797466680 0.000000e+00 774.0
18 TraesCS7A01G324800 chr2B 98.052 462 7 1 1 462 697215652 697215193 0.000000e+00 802.0
19 TraesCS7A01G324800 chr2B 75.133 563 100 24 2577 3119 795064342 795064884 1.150000e-55 228.0
20 TraesCS7A01G324800 chr2B 85.514 214 31 0 2086 2299 795063909 795064122 1.490000e-54 224.0
21 TraesCS7A01G324800 chr2B 95.062 81 3 1 1037 1116 795062864 795062944 4.320000e-25 126.0
22 TraesCS7A01G324800 chr1B 98.022 455 9 0 1 455 380474677 380475131 0.000000e+00 791.0
23 TraesCS7A01G324800 chr5B 97.802 455 9 1 1 455 548986604 548987057 0.000000e+00 784.0
24 TraesCS7A01G324800 chr1A 97.168 459 12 1 1 458 295993867 295993409 0.000000e+00 774.0
25 TraesCS7A01G324800 chr1A 90.476 63 4 2 3768 3830 21275952 21276012 9.490000e-12 82.4
26 TraesCS7A01G324800 chr4B 95.914 465 15 4 1 463 248876428 248876890 0.000000e+00 750.0
27 TraesCS7A01G324800 chr4B 92.063 63 4 1 3769 3831 400685566 400685627 2.040000e-13 87.9
28 TraesCS7A01G324800 chr2A 75.089 562 103 26 2577 3119 762291926 762291383 1.150000e-55 228.0
29 TraesCS7A01G324800 chr2A 84.112 214 34 0 2086 2299 762292358 762292145 1.500000e-49 207.0
30 TraesCS7A01G324800 chr2A 97.183 71 2 0 1043 1113 762293356 762293286 2.010000e-23 121.0
31 TraesCS7A01G324800 chr2D 74.956 563 101 28 2577 3119 637651451 637651993 5.360000e-54 222.0
32 TraesCS7A01G324800 chr2D 96.104 77 3 0 1037 1113 637650001 637650077 4.320000e-25 126.0
33 TraesCS7A01G324800 chr2D 94.340 53 3 0 3715 3767 639435389 639435441 9.490000e-12 82.4
34 TraesCS7A01G324800 chr4D 83.065 124 15 3 3715 3832 116786172 116786295 1.560000e-19 108.0
35 TraesCS7A01G324800 chr4D 92.188 64 3 2 3768 3831 320043035 320042974 5.670000e-14 89.8
36 TraesCS7A01G324800 chr4D 92.727 55 3 1 3715 3768 54281307 54281361 1.230000e-10 78.7
37 TraesCS7A01G324800 chrUn 98.148 54 1 0 3715 3768 350059902 350059849 1.220000e-15 95.3
38 TraesCS7A01G324800 chr6B 96.296 54 2 0 3715 3768 49001442 49001389 5.670000e-14 89.8
39 TraesCS7A01G324800 chr6B 89.231 65 5 2 3768 3832 16244734 16244672 3.410000e-11 80.5
40 TraesCS7A01G324800 chr4A 92.188 64 3 2 3768 3831 153246157 153246218 5.670000e-14 89.8
41 TraesCS7A01G324800 chr4A 92.593 54 4 0 3715 3768 576705276 576705223 1.230000e-10 78.7
42 TraesCS7A01G324800 chr6A 96.000 50 2 0 3780 3829 60168803 60168852 9.490000e-12 82.4
43 TraesCS7A01G324800 chr5D 87.302 63 5 3 3768 3830 554592334 554592393 7.380000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G324800 chr7A 472193993 472198109 4116 False 7603.000 7603 100.0000 1 4117 1 chr7A.!!$F1 4116
1 TraesCS7A01G324800 chr7D 411306063 411310177 4114 False 1244.250 3210 90.5195 454 4117 4 chr7D.!!$F2 3663
2 TraesCS7A01G324800 chr7B 425713534 425720684 7150 False 1241.875 3179 93.6525 454 4117 4 chr7B.!!$F2 3663

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
448 449 0.028374 GTGCGCCGTTTGTAAACACT 59.972 50.0 4.18 0.0 38.81 3.55 F
750 760 0.394352 CCAATCCTGGCCTGTGTACC 60.394 60.0 3.32 0.0 35.39 3.34 F
1681 3056 0.108138 GCACTGGCACTATCCTCGTT 60.108 55.0 0.00 0.0 40.72 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 3037 0.108138 AACGAGGATAGTGCCAGTGC 60.108 55.000 0.00 0.0 38.26 4.40 R
2155 3538 3.256704 AGTTAAGAGGATTCCACCCACA 58.743 45.455 5.29 0.0 0.00 4.17 R
3645 8179 0.459899 TGTTCATCGCGGATGTAGCT 59.540 50.000 6.13 0.0 40.55 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.147436 TTTTGAATGGCCGTTGAAGC 57.853 45.000 16.85 0.40 0.00 3.86
30 31 1.327303 TTTGAATGGCCGTTGAAGCT 58.673 45.000 16.85 0.00 0.00 3.74
31 32 1.327303 TTGAATGGCCGTTGAAGCTT 58.673 45.000 16.85 0.00 0.00 3.74
32 33 1.327303 TGAATGGCCGTTGAAGCTTT 58.673 45.000 16.85 0.00 0.00 3.51
33 34 1.686052 TGAATGGCCGTTGAAGCTTTT 59.314 42.857 16.85 0.00 0.00 2.27
34 35 2.102252 TGAATGGCCGTTGAAGCTTTTT 59.898 40.909 16.85 0.00 0.00 1.94
53 54 4.314740 TTTTAGGTGATGGTTGCAACAC 57.685 40.909 29.55 18.82 0.00 3.32
54 55 2.949177 TAGGTGATGGTTGCAACACT 57.051 45.000 29.55 16.54 34.28 3.55
55 56 2.071778 AGGTGATGGTTGCAACACTT 57.928 45.000 29.55 16.78 34.28 3.16
56 57 1.956477 AGGTGATGGTTGCAACACTTC 59.044 47.619 29.55 22.94 34.28 3.01
57 58 1.956477 GGTGATGGTTGCAACACTTCT 59.044 47.619 29.55 9.76 34.28 2.85
58 59 3.146066 GGTGATGGTTGCAACACTTCTA 58.854 45.455 29.55 8.88 34.28 2.10
59 60 3.758554 GGTGATGGTTGCAACACTTCTAT 59.241 43.478 29.55 13.58 34.28 1.98
60 61 4.941263 GGTGATGGTTGCAACACTTCTATA 59.059 41.667 29.55 9.27 34.28 1.31
61 62 5.163754 GGTGATGGTTGCAACACTTCTATAC 60.164 44.000 29.55 17.62 34.28 1.47
62 63 4.629634 TGATGGTTGCAACACTTCTATACG 59.370 41.667 29.55 0.00 0.00 3.06
63 64 2.739913 TGGTTGCAACACTTCTATACGC 59.260 45.455 29.55 9.23 0.00 4.42
64 65 2.222729 GGTTGCAACACTTCTATACGCG 60.223 50.000 29.55 3.53 0.00 6.01
65 66 1.635844 TGCAACACTTCTATACGCGG 58.364 50.000 12.47 0.00 0.00 6.46
66 67 0.928229 GCAACACTTCTATACGCGGG 59.072 55.000 12.47 0.00 0.00 6.13
67 68 1.567504 CAACACTTCTATACGCGGGG 58.432 55.000 12.47 0.00 0.00 5.73
68 69 1.134907 CAACACTTCTATACGCGGGGT 60.135 52.381 12.47 2.46 0.00 4.95
69 70 0.458669 ACACTTCTATACGCGGGGTG 59.541 55.000 12.47 10.43 0.00 4.61
70 71 0.249322 CACTTCTATACGCGGGGTGG 60.249 60.000 12.47 0.00 0.00 4.61
71 72 0.396139 ACTTCTATACGCGGGGTGGA 60.396 55.000 12.47 0.00 0.00 4.02
72 73 0.966920 CTTCTATACGCGGGGTGGAT 59.033 55.000 12.47 0.00 0.00 3.41
73 74 0.963962 TTCTATACGCGGGGTGGATC 59.036 55.000 12.47 0.00 0.00 3.36
74 75 0.896940 TCTATACGCGGGGTGGATCC 60.897 60.000 12.47 4.20 0.00 3.36
81 82 4.586235 GGGGTGGATCCGGGCATG 62.586 72.222 7.39 0.00 37.00 4.06
82 83 4.586235 GGGTGGATCCGGGCATGG 62.586 72.222 7.39 0.00 37.00 3.66
98 99 3.211963 GGCGGGCAGGCAGTTATG 61.212 66.667 6.27 0.00 45.92 1.90
99 100 3.211963 GCGGGCAGGCAGTTATGG 61.212 66.667 0.00 0.00 0.00 2.74
100 101 2.272146 CGGGCAGGCAGTTATGGT 59.728 61.111 0.00 0.00 0.00 3.55
101 102 2.114670 CGGGCAGGCAGTTATGGTG 61.115 63.158 0.00 0.00 0.00 4.17
102 103 1.754234 GGGCAGGCAGTTATGGTGG 60.754 63.158 0.00 0.00 0.00 4.61
103 104 1.754234 GGCAGGCAGTTATGGTGGG 60.754 63.158 0.00 0.00 0.00 4.61
104 105 2.418083 GCAGGCAGTTATGGTGGGC 61.418 63.158 0.00 0.00 0.00 5.36
105 106 2.114670 CAGGCAGTTATGGTGGGCG 61.115 63.158 0.00 0.00 0.00 6.13
106 107 2.828549 GGCAGTTATGGTGGGCGG 60.829 66.667 0.00 0.00 0.00 6.13
107 108 3.518068 GCAGTTATGGTGGGCGGC 61.518 66.667 0.00 0.00 0.00 6.53
108 109 3.202001 CAGTTATGGTGGGCGGCG 61.202 66.667 0.51 0.51 0.00 6.46
109 110 3.395702 AGTTATGGTGGGCGGCGA 61.396 61.111 12.98 0.00 0.00 5.54
110 111 2.895372 GTTATGGTGGGCGGCGAG 60.895 66.667 12.98 0.00 0.00 5.03
111 112 4.169696 TTATGGTGGGCGGCGAGG 62.170 66.667 12.98 0.00 0.00 4.63
143 144 3.197790 CCGGCGATGGAGCTTGTG 61.198 66.667 9.30 0.00 37.29 3.33
144 145 3.197790 CGGCGATGGAGCTTGTGG 61.198 66.667 0.00 0.00 37.29 4.17
145 146 2.045926 GGCGATGGAGCTTGTGGT 60.046 61.111 0.00 0.00 37.29 4.16
146 147 2.401766 GGCGATGGAGCTTGTGGTG 61.402 63.158 0.00 0.00 37.29 4.17
147 148 2.401766 GCGATGGAGCTTGTGGTGG 61.402 63.158 0.00 0.00 0.00 4.61
148 149 2.401766 CGATGGAGCTTGTGGTGGC 61.402 63.158 0.00 0.00 0.00 5.01
149 150 2.036256 ATGGAGCTTGTGGTGGCC 59.964 61.111 0.00 0.00 0.00 5.36
150 151 3.590466 ATGGAGCTTGTGGTGGCCC 62.590 63.158 0.00 0.00 0.00 5.80
151 152 4.284550 GGAGCTTGTGGTGGCCCA 62.285 66.667 0.00 0.00 38.87 5.36
152 153 2.674380 GAGCTTGTGGTGGCCCAG 60.674 66.667 0.00 0.00 42.94 4.45
153 154 4.982701 AGCTTGTGGTGGCCCAGC 62.983 66.667 5.84 5.84 42.94 4.85
178 179 4.548513 CGGGAGGAGGAGGAGGGG 62.549 77.778 0.00 0.00 0.00 4.79
179 180 3.036959 GGGAGGAGGAGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
180 181 2.612251 GGAGGAGGAGGAGGGGAG 59.388 72.222 0.00 0.00 0.00 4.30
181 182 2.612251 GAGGAGGAGGAGGGGAGG 59.388 72.222 0.00 0.00 0.00 4.30
182 183 3.039526 AGGAGGAGGAGGGGAGGG 61.040 72.222 0.00 0.00 0.00 4.30
183 184 4.179599 GGAGGAGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
184 185 3.036959 GAGGAGGAGGGGAGGGGA 61.037 72.222 0.00 0.00 0.00 4.81
185 186 2.289979 AGGAGGAGGGGAGGGGAT 60.290 66.667 0.00 0.00 0.00 3.85
186 187 2.122189 GGAGGAGGGGAGGGGATG 60.122 72.222 0.00 0.00 0.00 3.51
187 188 2.851588 GAGGAGGGGAGGGGATGC 60.852 72.222 0.00 0.00 0.00 3.91
188 189 4.888325 AGGAGGGGAGGGGATGCG 62.888 72.222 0.00 0.00 0.00 4.73
199 200 3.880846 GGATGCGCGCCCTTGAAG 61.881 66.667 30.77 0.00 0.00 3.02
200 201 3.880846 GATGCGCGCCCTTGAAGG 61.881 66.667 30.77 3.69 34.30 3.46
211 212 3.268023 CCCTTGAAGGCTGTAGGTTAG 57.732 52.381 5.50 0.00 32.73 2.34
212 213 2.092914 CCCTTGAAGGCTGTAGGTTAGG 60.093 54.545 5.50 0.00 32.73 2.69
213 214 2.092914 CCTTGAAGGCTGTAGGTTAGGG 60.093 54.545 0.00 0.00 0.00 3.53
214 215 2.634639 TGAAGGCTGTAGGTTAGGGA 57.365 50.000 0.00 0.00 0.00 4.20
215 216 3.130734 TGAAGGCTGTAGGTTAGGGAT 57.869 47.619 0.00 0.00 0.00 3.85
216 217 2.771943 TGAAGGCTGTAGGTTAGGGATG 59.228 50.000 0.00 0.00 0.00 3.51
217 218 1.807814 AGGCTGTAGGTTAGGGATGG 58.192 55.000 0.00 0.00 0.00 3.51
218 219 1.294068 AGGCTGTAGGTTAGGGATGGA 59.706 52.381 0.00 0.00 0.00 3.41
219 220 2.089925 AGGCTGTAGGTTAGGGATGGAT 60.090 50.000 0.00 0.00 0.00 3.41
220 221 2.303311 GGCTGTAGGTTAGGGATGGATC 59.697 54.545 0.00 0.00 0.00 3.36
221 222 3.243724 GCTGTAGGTTAGGGATGGATCT 58.756 50.000 0.00 0.00 0.00 2.75
222 223 3.007398 GCTGTAGGTTAGGGATGGATCTG 59.993 52.174 0.00 0.00 0.00 2.90
223 224 3.580458 CTGTAGGTTAGGGATGGATCTGG 59.420 52.174 0.00 0.00 0.00 3.86
224 225 1.439543 AGGTTAGGGATGGATCTGGC 58.560 55.000 0.00 0.00 0.00 4.85
225 226 0.402121 GGTTAGGGATGGATCTGGCC 59.598 60.000 0.00 0.00 0.00 5.36
226 227 1.140312 GTTAGGGATGGATCTGGCCA 58.860 55.000 4.71 4.71 43.23 5.36
231 232 3.349122 ATGGATCTGGCCATGGCA 58.651 55.556 36.56 21.67 46.62 4.92
287 288 4.814294 GCCGGCGATGGAGTTCGT 62.814 66.667 12.58 0.00 41.16 3.85
288 289 2.885644 CCGGCGATGGAGTTCGTG 60.886 66.667 9.30 0.00 41.16 4.35
289 290 2.885644 CGGCGATGGAGTTCGTGG 60.886 66.667 0.00 0.00 41.16 4.94
290 291 2.577059 GGCGATGGAGTTCGTGGA 59.423 61.111 0.00 0.00 41.16 4.02
291 292 1.519455 GGCGATGGAGTTCGTGGAG 60.519 63.158 0.00 0.00 41.16 3.86
292 293 1.519455 GCGATGGAGTTCGTGGAGG 60.519 63.158 0.00 0.00 41.16 4.30
293 294 1.519455 CGATGGAGTTCGTGGAGGC 60.519 63.158 0.00 0.00 34.46 4.70
294 295 1.153349 GATGGAGTTCGTGGAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
295 296 2.595009 GATGGAGTTCGTGGAGGCCC 62.595 65.000 0.00 0.00 0.00 5.80
296 297 3.319198 GGAGTTCGTGGAGGCCCA 61.319 66.667 0.00 0.00 40.95 5.36
297 298 2.266055 GAGTTCGTGGAGGCCCAG 59.734 66.667 0.00 0.00 44.55 4.45
298 299 2.526873 AGTTCGTGGAGGCCCAGT 60.527 61.111 0.00 0.00 44.55 4.00
299 300 2.047179 GTTCGTGGAGGCCCAGTC 60.047 66.667 0.00 0.00 44.55 3.51
300 301 3.691342 TTCGTGGAGGCCCAGTCG 61.691 66.667 0.00 0.00 44.55 4.18
303 304 4.767255 GTGGAGGCCCAGTCGCAG 62.767 72.222 0.00 0.00 44.55 5.18
306 307 4.828925 GAGGCCCAGTCGCAGCTC 62.829 72.222 0.00 0.00 0.00 4.09
339 340 3.545481 CGCGCACGTAGGCTGAAG 61.545 66.667 8.75 0.00 33.53 3.02
340 341 3.188786 GCGCACGTAGGCTGAAGG 61.189 66.667 0.30 0.00 0.00 3.46
341 342 2.261671 CGCACGTAGGCTGAAGGT 59.738 61.111 0.00 0.00 0.00 3.50
342 343 1.509463 CGCACGTAGGCTGAAGGTA 59.491 57.895 0.00 0.00 0.00 3.08
343 344 0.525668 CGCACGTAGGCTGAAGGTAG 60.526 60.000 0.00 0.00 0.00 3.18
344 345 0.179108 GCACGTAGGCTGAAGGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
345 346 0.460311 CACGTAGGCTGAAGGTAGGG 59.540 60.000 0.00 0.00 0.00 3.53
346 347 0.686769 ACGTAGGCTGAAGGTAGGGG 60.687 60.000 0.00 0.00 0.00 4.79
347 348 0.396695 CGTAGGCTGAAGGTAGGGGA 60.397 60.000 0.00 0.00 0.00 4.81
348 349 1.758123 CGTAGGCTGAAGGTAGGGGAT 60.758 57.143 0.00 0.00 0.00 3.85
349 350 1.694696 GTAGGCTGAAGGTAGGGGATG 59.305 57.143 0.00 0.00 0.00 3.51
350 351 0.695803 AGGCTGAAGGTAGGGGATGG 60.696 60.000 0.00 0.00 0.00 3.51
351 352 0.694444 GGCTGAAGGTAGGGGATGGA 60.694 60.000 0.00 0.00 0.00 3.41
352 353 0.761802 GCTGAAGGTAGGGGATGGAG 59.238 60.000 0.00 0.00 0.00 3.86
353 354 1.428869 CTGAAGGTAGGGGATGGAGG 58.571 60.000 0.00 0.00 0.00 4.30
354 355 0.694444 TGAAGGTAGGGGATGGAGGC 60.694 60.000 0.00 0.00 0.00 4.70
355 356 0.694444 GAAGGTAGGGGATGGAGGCA 60.694 60.000 0.00 0.00 0.00 4.75
356 357 0.988678 AAGGTAGGGGATGGAGGCAC 60.989 60.000 0.00 0.00 0.00 5.01
357 358 2.808206 GGTAGGGGATGGAGGCACG 61.808 68.421 0.00 0.00 0.00 5.34
358 359 2.064581 GTAGGGGATGGAGGCACGT 61.065 63.158 0.00 0.00 0.00 4.49
359 360 0.757935 GTAGGGGATGGAGGCACGTA 60.758 60.000 0.00 0.00 0.00 3.57
360 361 0.031917 TAGGGGATGGAGGCACGTAA 60.032 55.000 0.00 0.00 0.00 3.18
362 363 1.146263 GGGATGGAGGCACGTAAGG 59.854 63.158 0.00 0.00 46.39 2.69
363 364 1.335132 GGGATGGAGGCACGTAAGGA 61.335 60.000 0.00 0.00 46.39 3.36
364 365 0.539986 GGATGGAGGCACGTAAGGAA 59.460 55.000 0.00 0.00 46.39 3.36
365 366 1.473434 GGATGGAGGCACGTAAGGAAG 60.473 57.143 0.00 0.00 46.39 3.46
366 367 0.541863 ATGGAGGCACGTAAGGAAGG 59.458 55.000 0.00 0.00 46.39 3.46
367 368 0.543410 TGGAGGCACGTAAGGAAGGA 60.543 55.000 0.00 0.00 46.39 3.36
368 369 0.175989 GGAGGCACGTAAGGAAGGAG 59.824 60.000 0.00 0.00 46.39 3.69
369 370 0.175989 GAGGCACGTAAGGAAGGAGG 59.824 60.000 0.00 0.00 46.39 4.30
370 371 1.449778 GGCACGTAAGGAAGGAGGC 60.450 63.158 0.00 0.00 46.39 4.70
371 372 1.810030 GCACGTAAGGAAGGAGGCG 60.810 63.158 0.00 0.00 46.39 5.52
372 373 1.153628 CACGTAAGGAAGGAGGCGG 60.154 63.158 0.00 0.00 46.39 6.13
373 374 2.356780 ACGTAAGGAAGGAGGCGGG 61.357 63.158 0.00 0.00 46.39 6.13
374 375 2.908796 GTAAGGAAGGAGGCGGGG 59.091 66.667 0.00 0.00 0.00 5.73
375 376 1.688187 GTAAGGAAGGAGGCGGGGA 60.688 63.158 0.00 0.00 0.00 4.81
376 377 1.054978 GTAAGGAAGGAGGCGGGGAT 61.055 60.000 0.00 0.00 0.00 3.85
377 378 0.763223 TAAGGAAGGAGGCGGGGATC 60.763 60.000 0.00 0.00 0.00 3.36
378 379 3.930012 GGAAGGAGGCGGGGATCG 61.930 72.222 0.00 0.00 42.76 3.69
445 446 4.215330 GGTGCGCCGTTTGTAAAC 57.785 55.556 4.18 0.00 35.59 2.01
446 447 1.355916 GGTGCGCCGTTTGTAAACA 59.644 52.632 4.18 0.00 38.81 2.83
447 448 0.931202 GGTGCGCCGTTTGTAAACAC 60.931 55.000 4.18 0.00 38.81 3.32
448 449 0.028374 GTGCGCCGTTTGTAAACACT 59.972 50.000 4.18 0.00 38.81 3.55
449 450 0.733729 TGCGCCGTTTGTAAACACTT 59.266 45.000 4.18 0.00 38.81 3.16
450 451 1.268133 TGCGCCGTTTGTAAACACTTC 60.268 47.619 4.18 0.00 38.81 3.01
451 452 1.922880 GCGCCGTTTGTAAACACTTCC 60.923 52.381 0.00 0.00 38.81 3.46
452 453 1.334329 CGCCGTTTGTAAACACTTCCC 60.334 52.381 8.09 0.00 38.81 3.97
463 464 6.553524 TGTAAACACTTCCCTTTTACAAACG 58.446 36.000 4.15 0.00 40.83 3.60
510 511 0.472044 TGCTACTGCAGGGTTTGACA 59.528 50.000 19.93 3.26 45.31 3.58
602 603 2.154580 CGTCTGTCATTATCTCGCATGC 59.845 50.000 7.91 7.91 0.00 4.06
732 742 3.676093 CTCTCAACCTAAAACCAGGACC 58.324 50.000 0.00 0.00 39.18 4.46
749 759 3.175133 CCAATCCTGGCCTGTGTAC 57.825 57.895 3.32 0.00 35.39 2.90
750 760 0.394352 CCAATCCTGGCCTGTGTACC 60.394 60.000 3.32 0.00 35.39 3.34
751 761 0.394352 CAATCCTGGCCTGTGTACCC 60.394 60.000 3.32 0.00 0.00 3.69
753 763 0.983378 ATCCTGGCCTGTGTACCCTC 60.983 60.000 3.32 0.00 0.00 4.30
772 782 4.965532 CCCTCTTCTCTTCTTTCTCCCATA 59.034 45.833 0.00 0.00 0.00 2.74
776 786 7.255942 CCTCTTCTCTTCTTTCTCCCATATCTC 60.256 44.444 0.00 0.00 0.00 2.75
781 791 4.920640 TCTTTCTCCCATATCTCGTGTC 57.079 45.455 0.00 0.00 0.00 3.67
785 795 4.920640 TCTCCCATATCTCGTGTCTTTC 57.079 45.455 0.00 0.00 0.00 2.62
827 837 3.181967 CGCCGCCTCAAGTTCTCG 61.182 66.667 0.00 0.00 0.00 4.04
881 891 2.609737 GCCTTATAGAATGGGTCGTCCG 60.610 54.545 0.00 0.00 38.76 4.79
911 936 9.627123 AGGAGTTTTCGATGGATTAATTGATTA 57.373 29.630 0.00 0.00 0.00 1.75
1189 1233 2.250939 TGCGCCTCCTCGTGTTTTG 61.251 57.895 4.18 0.00 0.00 2.44
1339 1384 4.645136 ACAAAACCTCAAGTCCTTCCTTTC 59.355 41.667 0.00 0.00 0.00 2.62
1390 1435 7.237209 TCAGAGTTAAACTAGAGGGTAAACC 57.763 40.000 0.00 0.00 40.67 3.27
1391 1436 6.783977 TCAGAGTTAAACTAGAGGGTAAACCA 59.216 38.462 0.00 0.00 43.89 3.67
1392 1437 7.290714 TCAGAGTTAAACTAGAGGGTAAACCAA 59.709 37.037 0.00 0.00 43.89 3.67
1393 1438 7.387122 CAGAGTTAAACTAGAGGGTAAACCAAC 59.613 40.741 0.00 0.00 43.89 3.77
1394 1439 7.071572 AGAGTTAAACTAGAGGGTAAACCAACA 59.928 37.037 0.00 0.00 43.89 3.33
1395 1440 7.752638 AGTTAAACTAGAGGGTAAACCAACAT 58.247 34.615 0.00 0.00 43.89 2.71
1396 1441 7.664318 AGTTAAACTAGAGGGTAAACCAACATG 59.336 37.037 0.00 0.00 43.89 3.21
1397 1442 3.951663 ACTAGAGGGTAAACCAACATGC 58.048 45.455 0.00 0.00 43.89 4.06
1398 1443 2.215942 AGAGGGTAAACCAACATGCC 57.784 50.000 0.81 0.00 43.89 4.40
1399 1444 1.182667 GAGGGTAAACCAACATGCCC 58.817 55.000 0.81 0.00 43.89 5.36
1400 1445 0.783850 AGGGTAAACCAACATGCCCT 59.216 50.000 0.81 0.00 45.78 5.19
1401 1446 0.894835 GGGTAAACCAACATGCCCTG 59.105 55.000 0.81 0.00 38.35 4.45
1402 1447 1.549037 GGGTAAACCAACATGCCCTGA 60.549 52.381 0.81 0.00 38.35 3.86
1403 1448 2.456577 GGTAAACCAACATGCCCTGAT 58.543 47.619 0.00 0.00 35.64 2.90
1404 1449 2.166254 GGTAAACCAACATGCCCTGATG 59.834 50.000 0.00 0.00 35.64 3.07
1405 1450 2.307496 AAACCAACATGCCCTGATGA 57.693 45.000 0.00 0.00 29.46 2.92
1406 1451 2.537633 AACCAACATGCCCTGATGAT 57.462 45.000 0.00 0.00 29.46 2.45
1407 1452 2.062971 ACCAACATGCCCTGATGATC 57.937 50.000 0.00 0.00 29.46 2.92
1408 1453 1.567649 ACCAACATGCCCTGATGATCT 59.432 47.619 0.00 0.00 29.46 2.75
1409 1454 2.779430 ACCAACATGCCCTGATGATCTA 59.221 45.455 0.00 0.00 29.46 1.98
1410 1455 3.202818 ACCAACATGCCCTGATGATCTAA 59.797 43.478 0.00 0.00 29.46 2.10
1411 1456 4.209538 CCAACATGCCCTGATGATCTAAA 58.790 43.478 0.00 0.00 29.46 1.85
1412 1457 4.646040 CCAACATGCCCTGATGATCTAAAA 59.354 41.667 0.00 0.00 29.46 1.52
1413 1458 5.127519 CCAACATGCCCTGATGATCTAAAAA 59.872 40.000 0.00 0.00 29.46 1.94
1430 1475 3.405823 AAAAACCAACATGCCCTGATG 57.594 42.857 0.00 0.00 0.00 3.07
1431 1476 2.307496 AAACCAACATGCCCTGATGA 57.693 45.000 0.00 0.00 29.46 2.92
1432 1477 2.537633 AACCAACATGCCCTGATGAT 57.462 45.000 0.00 0.00 29.46 2.45
1433 1478 2.062971 ACCAACATGCCCTGATGATC 57.937 50.000 0.00 0.00 29.46 2.92
1434 1479 1.567649 ACCAACATGCCCTGATGATCT 59.432 47.619 0.00 0.00 29.46 2.75
1435 1480 2.779430 ACCAACATGCCCTGATGATCTA 59.221 45.455 0.00 0.00 29.46 1.98
1436 1481 3.202818 ACCAACATGCCCTGATGATCTAA 59.797 43.478 0.00 0.00 29.46 2.10
1437 1482 4.209538 CCAACATGCCCTGATGATCTAAA 58.790 43.478 0.00 0.00 29.46 1.85
1528 2878 9.566432 AGATGAATCTAAACATATTTCACCTCC 57.434 33.333 0.00 0.00 34.85 4.30
1595 2945 6.706295 TCTTTGTTTGGGGGCTTATTTTATG 58.294 36.000 0.00 0.00 0.00 1.90
1657 3032 7.071196 TGGACTAGAAATATACAACATCCTGCT 59.929 37.037 0.00 0.00 0.00 4.24
1658 3033 7.386299 GGACTAGAAATATACAACATCCTGCTG 59.614 40.741 0.00 0.00 0.00 4.41
1659 3034 6.708054 ACTAGAAATATACAACATCCTGCTGC 59.292 38.462 0.00 0.00 0.00 5.25
1660 3035 5.688807 AGAAATATACAACATCCTGCTGCT 58.311 37.500 0.00 0.00 0.00 4.24
1661 3036 5.530171 AGAAATATACAACATCCTGCTGCTG 59.470 40.000 0.00 0.00 0.00 4.41
1662 3037 2.048444 ATACAACATCCTGCTGCTGG 57.952 50.000 18.44 18.44 0.00 4.85
1663 3038 0.677731 TACAACATCCTGCTGCTGGC 60.678 55.000 19.55 0.00 42.22 4.85
1673 3048 2.348620 CTGCTGGCACTGGCACTA 59.651 61.111 0.07 0.00 43.71 2.74
1674 3049 1.077930 CTGCTGGCACTGGCACTAT 60.078 57.895 0.07 0.00 43.71 2.12
1675 3050 1.078214 TGCTGGCACTGGCACTATC 60.078 57.895 0.07 0.00 43.71 2.08
1676 3051 1.821332 GCTGGCACTGGCACTATCC 60.821 63.158 0.07 0.00 43.71 2.59
1677 3052 1.910722 CTGGCACTGGCACTATCCT 59.089 57.895 0.07 0.00 43.71 3.24
1678 3053 0.179062 CTGGCACTGGCACTATCCTC 60.179 60.000 0.07 0.00 43.71 3.71
1679 3054 1.227380 GGCACTGGCACTATCCTCG 60.227 63.158 0.00 0.00 43.71 4.63
1680 3055 1.517832 GCACTGGCACTATCCTCGT 59.482 57.895 0.00 0.00 40.72 4.18
1681 3056 0.108138 GCACTGGCACTATCCTCGTT 60.108 55.000 0.00 0.00 40.72 3.85
1685 3060 4.500887 GCACTGGCACTATCCTCGTTAATA 60.501 45.833 0.00 0.00 40.72 0.98
1687 3062 6.046593 CACTGGCACTATCCTCGTTAATAAA 58.953 40.000 0.00 0.00 0.00 1.40
1688 3063 6.201044 CACTGGCACTATCCTCGTTAATAAAG 59.799 42.308 0.00 0.00 0.00 1.85
1689 3064 6.097839 ACTGGCACTATCCTCGTTAATAAAGA 59.902 38.462 0.00 0.00 0.00 2.52
1690 3065 6.880484 TGGCACTATCCTCGTTAATAAAGAA 58.120 36.000 0.00 0.00 0.00 2.52
1691 3066 7.332557 TGGCACTATCCTCGTTAATAAAGAAA 58.667 34.615 0.00 0.00 0.00 2.52
1692 3067 7.990886 TGGCACTATCCTCGTTAATAAAGAAAT 59.009 33.333 0.00 0.00 0.00 2.17
1724 3107 9.832445 TCGTTAATAAAGAAATTATCTGCTCCT 57.168 29.630 0.00 0.00 38.79 3.69
1740 3123 2.287373 GCTCCTTGCTCTCGATGATTTG 59.713 50.000 0.00 0.00 38.95 2.32
1861 3244 5.500645 AAGTGCTCAAAGTAAAACCACTC 57.499 39.130 0.00 0.00 31.51 3.51
1990 3373 6.319658 TCTCTTTCATGCAGACCATAAAATCC 59.680 38.462 0.00 0.00 31.47 3.01
2155 3538 6.687139 GCATATGGGCTTCTTTGATTCCAATT 60.687 38.462 4.56 0.00 31.46 2.32
2191 3574 8.701908 TCCTCTTAACTTCAGTAACTGAACTA 57.298 34.615 0.00 0.00 44.27 2.24
2323 3706 7.664082 AACAGTTGATCTGATCAGTTTACAG 57.336 36.000 21.92 13.62 46.27 2.74
2351 3734 9.553064 AGAAATGATTACATACCAATCTGTCTC 57.447 33.333 0.00 0.00 35.50 3.36
2392 3775 2.675371 GTGTAGGGGAAGGGTGGC 59.325 66.667 0.00 0.00 0.00 5.01
2415 3798 6.025896 GCTGTTGTCATGTGATGTTTCATAG 58.974 40.000 0.00 0.00 33.56 2.23
2470 3853 2.401583 AAATACCGCTGCTGTCATCA 57.598 45.000 0.00 0.00 0.00 3.07
2471 3854 2.627515 AATACCGCTGCTGTCATCAT 57.372 45.000 0.00 0.00 0.00 2.45
2472 3855 2.627515 ATACCGCTGCTGTCATCATT 57.372 45.000 0.00 0.00 0.00 2.57
2541 3927 4.425577 ACGATCTTGCACATTTTCCTTC 57.574 40.909 0.00 0.00 0.00 3.46
2549 3935 4.326826 TGCACATTTTCCTTCTAGTGAGG 58.673 43.478 8.17 8.17 0.00 3.86
2573 3960 6.758416 GGTGATTTGCTGTTCTTTTTCTTCTT 59.242 34.615 0.00 0.00 0.00 2.52
2856 4243 0.889186 TCCGCTTTGTTCTGCTTCCC 60.889 55.000 0.00 0.00 0.00 3.97
2868 4255 0.555769 TGCTTCCCCAGTCCAAGTTT 59.444 50.000 0.00 0.00 0.00 2.66
3141 4528 2.297315 CAGGACATATAGGCGCTCTTGA 59.703 50.000 7.64 0.00 0.00 3.02
3152 4539 2.483714 GGCGCTCTTGACAATCATAGGA 60.484 50.000 7.64 0.00 0.00 2.94
3153 4540 3.198068 GCGCTCTTGACAATCATAGGAA 58.802 45.455 0.00 0.00 0.00 3.36
3154 4541 3.812053 GCGCTCTTGACAATCATAGGAAT 59.188 43.478 0.00 0.00 0.00 3.01
3286 4673 1.677942 TTCATGTCAGTTGCTGCACA 58.322 45.000 0.00 0.00 0.00 4.57
3384 4774 1.985473 TTGTTCAGGATGCTGCTTGT 58.015 45.000 9.76 0.00 34.76 3.16
3409 4799 3.017442 AGCATCTGACTACTGACGCTAA 58.983 45.455 0.00 0.00 40.50 3.09
3410 4800 3.634448 AGCATCTGACTACTGACGCTAAT 59.366 43.478 0.00 0.00 40.50 1.73
3421 4811 3.193691 ACTGACGCTAATAGACTGCTGTT 59.806 43.478 0.00 0.00 0.00 3.16
3429 4819 6.467047 CGCTAATAGACTGCTGTTGAAATTTG 59.533 38.462 0.00 0.00 0.00 2.32
3461 4851 5.394224 TTTTGTTTCCTCCGAAGTGTTTT 57.606 34.783 0.00 0.00 0.00 2.43
3462 4852 5.394224 TTTGTTTCCTCCGAAGTGTTTTT 57.606 34.783 0.00 0.00 0.00 1.94
3609 8143 1.343142 ACGATACAACACCACAGCTGA 59.657 47.619 23.35 0.00 0.00 4.26
3619 8153 2.485426 CACCACAGCTGAAACATGTAGG 59.515 50.000 23.35 9.58 0.00 3.18
3622 8156 2.413112 CACAGCTGAAACATGTAGGACG 59.587 50.000 23.35 0.00 0.00 4.79
3623 8157 2.299013 ACAGCTGAAACATGTAGGACGA 59.701 45.455 23.35 0.00 0.00 4.20
3625 8159 2.093973 AGCTGAAACATGTAGGACGAGG 60.094 50.000 0.00 0.00 0.00 4.63
3627 8161 1.278238 GAAACATGTAGGACGAGGCG 58.722 55.000 0.00 0.00 0.00 5.52
3628 8162 0.892755 AAACATGTAGGACGAGGCGA 59.107 50.000 0.00 0.00 0.00 5.54
3629 8163 1.112113 AACATGTAGGACGAGGCGAT 58.888 50.000 0.00 0.00 0.00 4.58
3630 8164 1.112113 ACATGTAGGACGAGGCGATT 58.888 50.000 0.00 0.00 0.00 3.34
3632 8166 0.311165 ATGTAGGACGAGGCGATTCG 59.689 55.000 0.62 0.62 45.70 3.34
3643 8177 4.845580 CGATTCGCTGCCCAGGCT 62.846 66.667 10.58 0.00 42.51 4.58
3644 8178 2.899339 GATTCGCTGCCCAGGCTC 60.899 66.667 10.58 0.94 42.51 4.70
3645 8179 3.687321 GATTCGCTGCCCAGGCTCA 62.687 63.158 10.58 0.00 42.51 4.26
3650 8184 2.188994 CTGCCCAGGCTCAGCTAC 59.811 66.667 10.58 0.00 42.51 3.58
3651 8185 2.607442 TGCCCAGGCTCAGCTACA 60.607 61.111 10.58 0.00 42.51 2.74
3652 8186 1.980784 CTGCCCAGGCTCAGCTACAT 61.981 60.000 10.58 0.00 42.51 2.29
3653 8187 1.227793 GCCCAGGCTCAGCTACATC 60.228 63.158 0.08 0.00 38.26 3.06
3654 8188 1.449353 CCCAGGCTCAGCTACATCC 59.551 63.158 0.00 0.00 0.00 3.51
3655 8189 1.068753 CCAGGCTCAGCTACATCCG 59.931 63.158 0.00 0.00 0.00 4.18
3656 8190 1.593750 CAGGCTCAGCTACATCCGC 60.594 63.158 0.00 0.00 0.00 5.54
3657 8191 2.659897 GGCTCAGCTACATCCGCG 60.660 66.667 0.00 0.00 0.00 6.46
3658 8192 2.413351 GCTCAGCTACATCCGCGA 59.587 61.111 8.23 0.00 0.00 5.87
3659 8193 1.006805 GCTCAGCTACATCCGCGAT 60.007 57.895 8.23 0.00 0.00 4.58
3660 8194 1.280886 GCTCAGCTACATCCGCGATG 61.281 60.000 8.23 12.33 44.71 3.84
3661 8195 0.312102 CTCAGCTACATCCGCGATGA 59.688 55.000 20.36 6.54 42.09 2.92
3662 8196 0.744281 TCAGCTACATCCGCGATGAA 59.256 50.000 20.36 0.00 42.09 2.57
3663 8197 0.855349 CAGCTACATCCGCGATGAAC 59.145 55.000 20.36 11.36 42.09 3.18
3664 8198 0.459899 AGCTACATCCGCGATGAACA 59.540 50.000 20.36 8.08 42.09 3.18
3665 8199 0.855349 GCTACATCCGCGATGAACAG 59.145 55.000 20.36 15.11 42.09 3.16
3666 8200 1.536072 GCTACATCCGCGATGAACAGA 60.536 52.381 20.36 3.78 42.09 3.41
3667 8201 2.809446 CTACATCCGCGATGAACAGAA 58.191 47.619 20.36 3.53 42.09 3.02
3668 8202 2.093306 ACATCCGCGATGAACAGAAA 57.907 45.000 20.36 0.00 42.09 2.52
3669 8203 2.422597 ACATCCGCGATGAACAGAAAA 58.577 42.857 20.36 0.00 42.09 2.29
3670 8204 3.009723 ACATCCGCGATGAACAGAAAAT 58.990 40.909 20.36 0.00 42.09 1.82
3671 8205 3.440173 ACATCCGCGATGAACAGAAAATT 59.560 39.130 20.36 0.00 42.09 1.82
3672 8206 3.740044 TCCGCGATGAACAGAAAATTC 57.260 42.857 8.23 0.00 0.00 2.17
3673 8207 3.070748 TCCGCGATGAACAGAAAATTCA 58.929 40.909 8.23 0.00 40.25 2.57
3674 8208 3.500299 TCCGCGATGAACAGAAAATTCAA 59.500 39.130 8.23 0.00 39.43 2.69
3675 8209 4.023622 TCCGCGATGAACAGAAAATTCAAA 60.024 37.500 8.23 0.00 39.43 2.69
3676 8210 4.679197 CCGCGATGAACAGAAAATTCAAAA 59.321 37.500 8.23 0.00 39.43 2.44
3677 8211 5.174761 CCGCGATGAACAGAAAATTCAAAAA 59.825 36.000 8.23 0.00 39.43 1.94
3703 8237 4.067972 ACACTGGTGTTGTATCGTTTCT 57.932 40.909 0.01 0.00 41.83 2.52
3704 8238 3.807622 ACACTGGTGTTGTATCGTTTCTG 59.192 43.478 0.01 0.00 41.83 3.02
3705 8239 2.806244 ACTGGTGTTGTATCGTTTCTGC 59.194 45.455 0.00 0.00 0.00 4.26
3706 8240 2.147958 TGGTGTTGTATCGTTTCTGCC 58.852 47.619 0.00 0.00 0.00 4.85
3707 8241 2.224426 TGGTGTTGTATCGTTTCTGCCT 60.224 45.455 0.00 0.00 0.00 4.75
3708 8242 2.159627 GGTGTTGTATCGTTTCTGCCTG 59.840 50.000 0.00 0.00 0.00 4.85
3709 8243 3.064207 GTGTTGTATCGTTTCTGCCTGA 58.936 45.455 0.00 0.00 0.00 3.86
3710 8244 3.496884 GTGTTGTATCGTTTCTGCCTGAA 59.503 43.478 0.00 0.00 0.00 3.02
3711 8245 3.496884 TGTTGTATCGTTTCTGCCTGAAC 59.503 43.478 0.00 0.00 33.88 3.18
3712 8246 3.678056 TGTATCGTTTCTGCCTGAACT 57.322 42.857 0.00 0.00 33.88 3.01
3713 8247 4.002906 TGTATCGTTTCTGCCTGAACTT 57.997 40.909 0.00 0.00 33.88 2.66
3714 8248 3.994392 TGTATCGTTTCTGCCTGAACTTC 59.006 43.478 0.00 0.00 33.88 3.01
3715 8249 2.613026 TCGTTTCTGCCTGAACTTCA 57.387 45.000 0.00 0.00 33.88 3.02
3716 8250 2.912771 TCGTTTCTGCCTGAACTTCAA 58.087 42.857 0.00 0.00 33.88 2.69
3717 8251 3.275143 TCGTTTCTGCCTGAACTTCAAA 58.725 40.909 0.00 0.00 33.88 2.69
3718 8252 3.882888 TCGTTTCTGCCTGAACTTCAAAT 59.117 39.130 0.00 0.00 33.88 2.32
3719 8253 5.060506 TCGTTTCTGCCTGAACTTCAAATA 58.939 37.500 0.00 0.00 33.88 1.40
3720 8254 5.529430 TCGTTTCTGCCTGAACTTCAAATAA 59.471 36.000 0.00 0.00 33.88 1.40
3721 8255 6.206634 TCGTTTCTGCCTGAACTTCAAATAAT 59.793 34.615 0.00 0.00 33.88 1.28
3722 8256 6.524586 CGTTTCTGCCTGAACTTCAAATAATC 59.475 38.462 0.00 0.00 33.88 1.75
3723 8257 7.573843 CGTTTCTGCCTGAACTTCAAATAATCT 60.574 37.037 0.00 0.00 33.88 2.40
3724 8258 6.748333 TCTGCCTGAACTTCAAATAATCTG 57.252 37.500 0.00 0.00 0.00 2.90
3725 8259 6.475504 TCTGCCTGAACTTCAAATAATCTGA 58.524 36.000 0.00 0.00 0.00 3.27
3726 8260 6.942005 TCTGCCTGAACTTCAAATAATCTGAA 59.058 34.615 0.00 0.00 0.00 3.02
3727 8261 7.448161 TCTGCCTGAACTTCAAATAATCTGAAA 59.552 33.333 0.00 0.00 32.57 2.69
3728 8262 8.125978 TGCCTGAACTTCAAATAATCTGAAAT 57.874 30.769 0.00 0.00 32.57 2.17
3729 8263 8.587608 TGCCTGAACTTCAAATAATCTGAAATT 58.412 29.630 0.00 0.00 32.57 1.82
3730 8264 9.428097 GCCTGAACTTCAAATAATCTGAAATTT 57.572 29.630 0.00 0.00 32.57 1.82
3737 8271 7.510428 TCAAATAATCTGAAATTTGAAGCGC 57.490 32.000 20.33 0.00 44.78 5.92
3738 8272 7.089538 TCAAATAATCTGAAATTTGAAGCGCA 58.910 30.769 20.33 0.00 44.78 6.09
3739 8273 6.875926 AATAATCTGAAATTTGAAGCGCAC 57.124 33.333 11.47 3.52 0.00 5.34
3740 8274 2.704725 TCTGAAATTTGAAGCGCACC 57.295 45.000 11.47 0.05 0.00 5.01
3741 8275 2.229792 TCTGAAATTTGAAGCGCACCT 58.770 42.857 11.47 0.00 0.00 4.00
3742 8276 2.226437 TCTGAAATTTGAAGCGCACCTC 59.774 45.455 11.47 3.36 0.00 3.85
3743 8277 1.952990 TGAAATTTGAAGCGCACCTCA 59.047 42.857 11.47 6.45 0.00 3.86
3744 8278 2.287547 TGAAATTTGAAGCGCACCTCAC 60.288 45.455 11.47 0.00 0.00 3.51
3745 8279 0.238289 AATTTGAAGCGCACCTCACG 59.762 50.000 11.47 0.00 0.00 4.35
3752 8286 3.252964 CGCACCTCACGCATCAAA 58.747 55.556 0.00 0.00 0.00 2.69
3753 8287 1.796151 CGCACCTCACGCATCAAAT 59.204 52.632 0.00 0.00 0.00 2.32
3754 8288 0.168788 CGCACCTCACGCATCAAATT 59.831 50.000 0.00 0.00 0.00 1.82
3755 8289 1.396648 CGCACCTCACGCATCAAATTA 59.603 47.619 0.00 0.00 0.00 1.40
3756 8290 2.032054 CGCACCTCACGCATCAAATTAT 59.968 45.455 0.00 0.00 0.00 1.28
3757 8291 3.621794 GCACCTCACGCATCAAATTATC 58.378 45.455 0.00 0.00 0.00 1.75
3758 8292 3.313526 GCACCTCACGCATCAAATTATCT 59.686 43.478 0.00 0.00 0.00 1.98
3759 8293 4.201950 GCACCTCACGCATCAAATTATCTT 60.202 41.667 0.00 0.00 0.00 2.40
3760 8294 5.505286 CACCTCACGCATCAAATTATCTTC 58.495 41.667 0.00 0.00 0.00 2.87
3761 8295 4.576463 ACCTCACGCATCAAATTATCTTCC 59.424 41.667 0.00 0.00 0.00 3.46
3762 8296 4.576053 CCTCACGCATCAAATTATCTTCCA 59.424 41.667 0.00 0.00 0.00 3.53
3763 8297 5.240183 CCTCACGCATCAAATTATCTTCCAT 59.760 40.000 0.00 0.00 0.00 3.41
3764 8298 6.063640 TCACGCATCAAATTATCTTCCATG 57.936 37.500 0.00 0.00 0.00 3.66
3765 8299 4.678287 CACGCATCAAATTATCTTCCATGC 59.322 41.667 0.00 0.00 33.35 4.06
3766 8300 4.338964 ACGCATCAAATTATCTTCCATGCA 59.661 37.500 0.00 0.00 35.87 3.96
3767 8301 5.163530 ACGCATCAAATTATCTTCCATGCAA 60.164 36.000 0.00 0.00 35.87 4.08
3768 8302 5.924254 CGCATCAAATTATCTTCCATGCAAT 59.076 36.000 0.00 0.00 35.87 3.56
3769 8303 6.422701 CGCATCAAATTATCTTCCATGCAATT 59.577 34.615 0.00 0.00 35.87 2.32
3770 8304 7.042321 CGCATCAAATTATCTTCCATGCAATTT 60.042 33.333 0.00 0.00 35.87 1.82
3771 8305 8.617809 GCATCAAATTATCTTCCATGCAATTTT 58.382 29.630 0.00 0.00 36.11 1.82
3772 8306 9.929722 CATCAAATTATCTTCCATGCAATTTTG 57.070 29.630 0.00 0.00 28.88 2.44
3773 8307 9.675464 ATCAAATTATCTTCCATGCAATTTTGT 57.325 25.926 0.00 0.00 28.88 2.83
3774 8308 9.504708 TCAAATTATCTTCCATGCAATTTTGTT 57.495 25.926 0.00 0.00 28.88 2.83
3778 8312 5.903764 TCTTCCATGCAATTTTGTTTTCG 57.096 34.783 0.00 0.00 0.00 3.46
3779 8313 5.595885 TCTTCCATGCAATTTTGTTTTCGA 58.404 33.333 0.00 0.00 0.00 3.71
3780 8314 6.045318 TCTTCCATGCAATTTTGTTTTCGAA 58.955 32.000 0.00 0.00 0.00 3.71
3781 8315 6.705381 TCTTCCATGCAATTTTGTTTTCGAAT 59.295 30.769 0.00 0.00 0.00 3.34
3782 8316 6.857777 TCCATGCAATTTTGTTTTCGAATT 57.142 29.167 0.00 0.00 0.00 2.17
3783 8317 7.256756 TCCATGCAATTTTGTTTTCGAATTT 57.743 28.000 0.00 0.00 0.00 1.82
3784 8318 7.701445 TCCATGCAATTTTGTTTTCGAATTTT 58.299 26.923 0.00 0.00 0.00 1.82
3785 8319 7.854916 TCCATGCAATTTTGTTTTCGAATTTTC 59.145 29.630 0.00 0.00 0.00 2.29
3786 8320 7.856894 CCATGCAATTTTGTTTTCGAATTTTCT 59.143 29.630 0.00 0.00 0.00 2.52
3787 8321 8.885108 CATGCAATTTTGTTTTCGAATTTTCTC 58.115 29.630 0.00 0.00 0.00 2.87
3788 8322 8.195617 TGCAATTTTGTTTTCGAATTTTCTCT 57.804 26.923 0.00 0.00 0.00 3.10
3789 8323 8.663911 TGCAATTTTGTTTTCGAATTTTCTCTT 58.336 25.926 0.00 0.00 0.00 2.85
3790 8324 9.147364 GCAATTTTGTTTTCGAATTTTCTCTTC 57.853 29.630 0.00 0.00 0.00 2.87
3793 8327 7.749539 TTTGTTTTCGAATTTTCTCTTCACC 57.250 32.000 0.00 0.00 0.00 4.02
3794 8328 5.507077 TGTTTTCGAATTTTCTCTTCACCG 58.493 37.500 0.00 0.00 0.00 4.94
3795 8329 4.742438 TTTCGAATTTTCTCTTCACCGG 57.258 40.909 0.00 0.00 0.00 5.28
3796 8330 2.695359 TCGAATTTTCTCTTCACCGGG 58.305 47.619 6.32 0.00 0.00 5.73
3797 8331 2.038033 TCGAATTTTCTCTTCACCGGGT 59.962 45.455 6.32 0.00 0.00 5.28
3798 8332 2.159627 CGAATTTTCTCTTCACCGGGTG 59.840 50.000 21.27 21.27 34.45 4.61
3799 8333 1.534729 ATTTTCTCTTCACCGGGTGC 58.465 50.000 22.42 0.00 32.98 5.01
3800 8334 0.181587 TTTTCTCTTCACCGGGTGCA 59.818 50.000 22.42 11.10 32.98 4.57
3801 8335 0.250295 TTTCTCTTCACCGGGTGCAG 60.250 55.000 22.42 20.69 32.98 4.41
3802 8336 1.118965 TTCTCTTCACCGGGTGCAGA 61.119 55.000 24.65 24.65 33.88 4.26
3803 8337 0.904865 TCTCTTCACCGGGTGCAGAT 60.905 55.000 26.02 0.00 35.56 2.90
3804 8338 0.742281 CTCTTCACCGGGTGCAGATG 60.742 60.000 26.02 17.20 35.56 2.90
3805 8339 1.191489 TCTTCACCGGGTGCAGATGA 61.191 55.000 22.97 11.16 31.60 2.92
3806 8340 0.742281 CTTCACCGGGTGCAGATGAG 60.742 60.000 20.32 8.17 28.74 2.90
3807 8341 2.803155 TTCACCGGGTGCAGATGAGC 62.803 60.000 22.42 0.00 32.98 4.26
3808 8342 4.101448 ACCGGGTGCAGATGAGCC 62.101 66.667 6.32 0.00 0.00 4.70
3809 8343 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
3810 8344 2.434843 CCGGGTGCAGATGAGCCTA 61.435 63.158 0.00 0.00 0.00 3.93
3811 8345 1.068753 CGGGTGCAGATGAGCCTAG 59.931 63.158 0.00 0.00 0.00 3.02
3812 8346 1.449353 GGGTGCAGATGAGCCTAGG 59.551 63.158 3.67 3.67 0.00 3.02
3813 8347 1.227793 GGTGCAGATGAGCCTAGGC 60.228 63.158 27.19 27.19 42.33 3.93
3829 8363 6.993786 GCCTAGGCTTAGAAATGGATATTC 57.006 41.667 27.17 0.00 38.26 1.75
3830 8364 5.582665 GCCTAGGCTTAGAAATGGATATTCG 59.417 44.000 27.17 0.00 38.26 3.34
3831 8365 5.582665 CCTAGGCTTAGAAATGGATATTCGC 59.417 44.000 4.08 0.00 32.04 4.70
3832 8366 4.973168 AGGCTTAGAAATGGATATTCGCA 58.027 39.130 0.00 0.00 32.04 5.10
3833 8367 5.376625 AGGCTTAGAAATGGATATTCGCAA 58.623 37.500 0.00 0.00 32.04 4.85
3834 8368 5.239525 AGGCTTAGAAATGGATATTCGCAAC 59.760 40.000 0.00 0.00 32.04 4.17
3835 8369 5.008613 GGCTTAGAAATGGATATTCGCAACA 59.991 40.000 0.00 0.00 32.04 3.33
3836 8370 6.294176 GGCTTAGAAATGGATATTCGCAACAT 60.294 38.462 0.00 0.00 32.04 2.71
3837 8371 7.094805 GGCTTAGAAATGGATATTCGCAACATA 60.095 37.037 0.00 0.00 32.04 2.29
3838 8372 8.454106 GCTTAGAAATGGATATTCGCAACATAT 58.546 33.333 0.00 0.00 32.04 1.78
3841 8375 7.978982 AGAAATGGATATTCGCAACATATAGC 58.021 34.615 0.00 0.00 32.04 2.97
3842 8376 7.607607 AGAAATGGATATTCGCAACATATAGCA 59.392 33.333 0.00 0.00 32.04 3.49
3843 8377 6.668541 ATGGATATTCGCAACATATAGCAC 57.331 37.500 0.00 0.00 0.00 4.40
3844 8378 5.546526 TGGATATTCGCAACATATAGCACA 58.453 37.500 0.00 0.00 0.00 4.57
3845 8379 5.408299 TGGATATTCGCAACATATAGCACAC 59.592 40.000 0.00 0.00 0.00 3.82
3846 8380 5.408299 GGATATTCGCAACATATAGCACACA 59.592 40.000 0.00 0.00 0.00 3.72
3847 8381 6.073276 GGATATTCGCAACATATAGCACACAA 60.073 38.462 0.00 0.00 0.00 3.33
3848 8382 5.559427 ATTCGCAACATATAGCACACAAA 57.441 34.783 0.00 0.00 0.00 2.83
3849 8383 4.598406 TCGCAACATATAGCACACAAAG 57.402 40.909 0.00 0.00 0.00 2.77
3850 8384 4.249661 TCGCAACATATAGCACACAAAGA 58.750 39.130 0.00 0.00 0.00 2.52
3851 8385 4.693095 TCGCAACATATAGCACACAAAGAA 59.307 37.500 0.00 0.00 0.00 2.52
3852 8386 5.180304 TCGCAACATATAGCACACAAAGAAA 59.820 36.000 0.00 0.00 0.00 2.52
3853 8387 5.509272 CGCAACATATAGCACACAAAGAAAG 59.491 40.000 0.00 0.00 0.00 2.62
3854 8388 6.611381 GCAACATATAGCACACAAAGAAAGA 58.389 36.000 0.00 0.00 0.00 2.52
3855 8389 7.083858 GCAACATATAGCACACAAAGAAAGAA 58.916 34.615 0.00 0.00 0.00 2.52
3856 8390 7.272084 GCAACATATAGCACACAAAGAAAGAAG 59.728 37.037 0.00 0.00 0.00 2.85
3857 8391 8.506437 CAACATATAGCACACAAAGAAAGAAGA 58.494 33.333 0.00 0.00 0.00 2.87
3858 8392 8.261492 ACATATAGCACACAAAGAAAGAAGAG 57.739 34.615 0.00 0.00 0.00 2.85
3859 8393 7.335422 ACATATAGCACACAAAGAAAGAAGAGG 59.665 37.037 0.00 0.00 0.00 3.69
3864 8398 6.097412 AGCACACAAAGAAAGAAGAGGAAAAT 59.903 34.615 0.00 0.00 0.00 1.82
3866 8400 7.260603 CACACAAAGAAAGAAGAGGAAAATGT 58.739 34.615 0.00 0.00 0.00 2.71
3868 8402 9.136323 ACACAAAGAAAGAAGAGGAAAATGTAT 57.864 29.630 0.00 0.00 0.00 2.29
3893 8428 3.885901 AGAGAGAGAACCAAAAACAAGCC 59.114 43.478 0.00 0.00 0.00 4.35
3904 8439 3.305398 AAAACAAGCCACGACAAACAA 57.695 38.095 0.00 0.00 0.00 2.83
3923 8458 4.079253 ACAACCAGCACCGAGAAATTTAT 58.921 39.130 0.00 0.00 0.00 1.40
3930 8465 5.584649 CAGCACCGAGAAATTTATCACCTTA 59.415 40.000 12.94 0.00 0.00 2.69
3931 8466 6.093495 CAGCACCGAGAAATTTATCACCTTAA 59.907 38.462 12.94 0.00 0.00 1.85
3990 8525 2.171448 AGAGGAACAAGCACAGAACACT 59.829 45.455 0.00 0.00 0.00 3.55
4000 8535 4.408276 AGCACAGAACACTACCTAAGAGA 58.592 43.478 0.00 0.00 0.00 3.10
4027 8565 9.857656 AGACATAACATGATGATCAAAGGTAAT 57.142 29.630 0.00 0.00 0.00 1.89
4035 8573 7.959658 TGATGATCAAAGGTAATCCATGTTT 57.040 32.000 0.00 0.00 35.89 2.83
4044 8582 6.575162 AGGTAATCCATGTTTCTTGTGTTC 57.425 37.500 0.00 0.00 35.89 3.18
4045 8583 5.476945 AGGTAATCCATGTTTCTTGTGTTCC 59.523 40.000 0.00 0.00 35.89 3.62
4046 8584 5.242838 GGTAATCCATGTTTCTTGTGTTCCA 59.757 40.000 0.00 0.00 0.00 3.53
4047 8585 4.853924 ATCCATGTTTCTTGTGTTCCAC 57.146 40.909 0.00 0.00 34.56 4.02
4048 8586 2.616376 TCCATGTTTCTTGTGTTCCACG 59.384 45.455 0.00 0.00 37.14 4.94
4049 8587 2.287547 CCATGTTTCTTGTGTTCCACGG 60.288 50.000 0.00 0.00 37.14 4.94
4050 8588 2.404923 TGTTTCTTGTGTTCCACGGA 57.595 45.000 0.00 0.00 37.14 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.102252 AGCTTCAACGGCCATTCAAAAA 59.898 40.909 2.24 0.00 0.00 1.94
10 11 1.686052 AGCTTCAACGGCCATTCAAAA 59.314 42.857 2.24 0.00 0.00 2.44
11 12 1.327303 AGCTTCAACGGCCATTCAAA 58.673 45.000 2.24 0.00 0.00 2.69
12 13 1.327303 AAGCTTCAACGGCCATTCAA 58.673 45.000 2.24 0.00 0.00 2.69
13 14 1.327303 AAAGCTTCAACGGCCATTCA 58.673 45.000 2.24 0.00 0.00 2.57
14 15 2.438868 AAAAGCTTCAACGGCCATTC 57.561 45.000 2.24 0.00 0.00 2.67
15 16 2.908688 AAAAAGCTTCAACGGCCATT 57.091 40.000 2.24 0.00 0.00 3.16
31 32 4.404073 AGTGTTGCAACCATCACCTAAAAA 59.596 37.500 26.14 0.00 40.78 1.94
32 33 3.957497 AGTGTTGCAACCATCACCTAAAA 59.043 39.130 26.14 0.21 40.78 1.52
33 34 3.561143 AGTGTTGCAACCATCACCTAAA 58.439 40.909 26.14 0.76 40.78 1.85
34 35 3.222173 AGTGTTGCAACCATCACCTAA 57.778 42.857 26.14 1.54 40.78 2.69
35 36 2.949177 AGTGTTGCAACCATCACCTA 57.051 45.000 26.14 2.32 40.78 3.08
36 37 1.956477 GAAGTGTTGCAACCATCACCT 59.044 47.619 26.14 7.88 40.78 4.00
37 38 1.956477 AGAAGTGTTGCAACCATCACC 59.044 47.619 26.14 10.69 40.78 4.02
38 39 5.445939 CGTATAGAAGTGTTGCAACCATCAC 60.446 44.000 26.14 17.20 40.39 3.06
39 40 4.629634 CGTATAGAAGTGTTGCAACCATCA 59.370 41.667 26.14 5.18 0.00 3.07
40 41 4.494199 GCGTATAGAAGTGTTGCAACCATC 60.494 45.833 26.14 19.70 0.00 3.51
41 42 3.374058 GCGTATAGAAGTGTTGCAACCAT 59.626 43.478 26.14 12.23 0.00 3.55
42 43 2.739913 GCGTATAGAAGTGTTGCAACCA 59.260 45.455 26.14 11.92 0.00 3.67
43 44 2.222729 CGCGTATAGAAGTGTTGCAACC 60.223 50.000 26.14 17.03 0.00 3.77
44 45 2.222729 CCGCGTATAGAAGTGTTGCAAC 60.223 50.000 22.83 22.83 0.00 4.17
45 46 1.996898 CCGCGTATAGAAGTGTTGCAA 59.003 47.619 4.92 0.00 0.00 4.08
46 47 1.635844 CCGCGTATAGAAGTGTTGCA 58.364 50.000 4.92 0.00 0.00 4.08
47 48 0.928229 CCCGCGTATAGAAGTGTTGC 59.072 55.000 4.92 0.00 0.00 4.17
48 49 1.134907 ACCCCGCGTATAGAAGTGTTG 60.135 52.381 4.92 0.00 0.00 3.33
49 50 1.134907 CACCCCGCGTATAGAAGTGTT 60.135 52.381 4.92 0.00 0.00 3.32
50 51 0.458669 CACCCCGCGTATAGAAGTGT 59.541 55.000 4.92 0.00 0.00 3.55
51 52 0.249322 CCACCCCGCGTATAGAAGTG 60.249 60.000 4.92 1.51 0.00 3.16
52 53 0.396139 TCCACCCCGCGTATAGAAGT 60.396 55.000 4.92 0.00 0.00 3.01
53 54 0.966920 ATCCACCCCGCGTATAGAAG 59.033 55.000 4.92 0.00 0.00 2.85
54 55 0.963962 GATCCACCCCGCGTATAGAA 59.036 55.000 4.92 0.00 0.00 2.10
55 56 0.896940 GGATCCACCCCGCGTATAGA 60.897 60.000 6.95 0.00 0.00 1.98
56 57 1.590147 GGATCCACCCCGCGTATAG 59.410 63.158 6.95 0.00 0.00 1.31
57 58 2.270257 CGGATCCACCCCGCGTATA 61.270 63.158 13.41 0.00 40.54 1.47
58 59 3.612681 CGGATCCACCCCGCGTAT 61.613 66.667 13.41 0.00 40.54 3.06
64 65 4.586235 CATGCCCGGATCCACCCC 62.586 72.222 13.41 0.00 34.64 4.95
65 66 4.586235 CCATGCCCGGATCCACCC 62.586 72.222 13.41 0.00 34.64 4.61
78 79 3.993614 TAACTGCCTGCCCGCCATG 62.994 63.158 0.00 0.00 0.00 3.66
79 80 3.060614 ATAACTGCCTGCCCGCCAT 62.061 57.895 0.00 0.00 0.00 4.40
80 81 3.727258 ATAACTGCCTGCCCGCCA 61.727 61.111 0.00 0.00 0.00 5.69
81 82 3.211963 CATAACTGCCTGCCCGCC 61.212 66.667 0.00 0.00 0.00 6.13
82 83 3.211963 CCATAACTGCCTGCCCGC 61.212 66.667 0.00 0.00 0.00 6.13
83 84 2.114670 CACCATAACTGCCTGCCCG 61.115 63.158 0.00 0.00 0.00 6.13
84 85 1.754234 CCACCATAACTGCCTGCCC 60.754 63.158 0.00 0.00 0.00 5.36
85 86 1.754234 CCCACCATAACTGCCTGCC 60.754 63.158 0.00 0.00 0.00 4.85
86 87 2.418083 GCCCACCATAACTGCCTGC 61.418 63.158 0.00 0.00 0.00 4.85
87 88 2.114670 CGCCCACCATAACTGCCTG 61.115 63.158 0.00 0.00 0.00 4.85
88 89 2.272146 CGCCCACCATAACTGCCT 59.728 61.111 0.00 0.00 0.00 4.75
89 90 2.828549 CCGCCCACCATAACTGCC 60.829 66.667 0.00 0.00 0.00 4.85
90 91 3.518068 GCCGCCCACCATAACTGC 61.518 66.667 0.00 0.00 0.00 4.40
91 92 3.202001 CGCCGCCCACCATAACTG 61.202 66.667 0.00 0.00 0.00 3.16
92 93 3.385749 CTCGCCGCCCACCATAACT 62.386 63.158 0.00 0.00 0.00 2.24
93 94 2.895372 CTCGCCGCCCACCATAAC 60.895 66.667 0.00 0.00 0.00 1.89
94 95 4.169696 CCTCGCCGCCCACCATAA 62.170 66.667 0.00 0.00 0.00 1.90
126 127 3.197790 CACAAGCTCCATCGCCGG 61.198 66.667 0.00 0.00 0.00 6.13
127 128 3.197790 CCACAAGCTCCATCGCCG 61.198 66.667 0.00 0.00 0.00 6.46
128 129 2.045926 ACCACAAGCTCCATCGCC 60.046 61.111 0.00 0.00 0.00 5.54
129 130 2.401766 CCACCACAAGCTCCATCGC 61.402 63.158 0.00 0.00 0.00 4.58
130 131 2.401766 GCCACCACAAGCTCCATCG 61.402 63.158 0.00 0.00 0.00 3.84
131 132 2.048603 GGCCACCACAAGCTCCATC 61.049 63.158 0.00 0.00 0.00 3.51
132 133 2.036256 GGCCACCACAAGCTCCAT 59.964 61.111 0.00 0.00 0.00 3.41
133 134 4.284550 GGGCCACCACAAGCTCCA 62.285 66.667 4.39 0.00 36.50 3.86
134 135 4.284550 TGGGCCACCACAAGCTCC 62.285 66.667 0.00 0.00 43.37 4.70
135 136 2.674380 CTGGGCCACCACAAGCTC 60.674 66.667 0.00 0.00 43.37 4.09
136 137 4.982701 GCTGGGCCACCACAAGCT 62.983 66.667 0.00 0.00 43.37 3.74
159 160 4.548513 CCTCCTCCTCCTCCCGGG 62.549 77.778 16.85 16.85 0.00 5.73
160 161 4.548513 CCCTCCTCCTCCTCCCGG 62.549 77.778 0.00 0.00 0.00 5.73
161 162 4.548513 CCCCTCCTCCTCCTCCCG 62.549 77.778 0.00 0.00 0.00 5.14
162 163 3.036959 TCCCCTCCTCCTCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
163 164 2.612251 CTCCCCTCCTCCTCCTCC 59.388 72.222 0.00 0.00 0.00 4.30
164 165 2.612251 CCTCCCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
165 166 3.039526 CCCTCCCCTCCTCCTCCT 61.040 72.222 0.00 0.00 0.00 3.69
166 167 4.179599 CCCCTCCCCTCCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
167 168 2.416923 ATCCCCTCCCCTCCTCCTC 61.417 68.421 0.00 0.00 0.00 3.71
168 169 2.289979 ATCCCCTCCCCTCCTCCT 60.290 66.667 0.00 0.00 0.00 3.69
169 170 2.122189 CATCCCCTCCCCTCCTCC 60.122 72.222 0.00 0.00 0.00 4.30
170 171 2.851588 GCATCCCCTCCCCTCCTC 60.852 72.222 0.00 0.00 0.00 3.71
171 172 4.888325 CGCATCCCCTCCCCTCCT 62.888 72.222 0.00 0.00 0.00 3.69
182 183 3.880846 CTTCAAGGGCGCGCATCC 61.881 66.667 34.42 25.47 0.00 3.51
183 184 3.880846 CCTTCAAGGGCGCGCATC 61.881 66.667 34.42 23.66 0.00 3.91
191 192 2.092914 CCTAACCTACAGCCTTCAAGGG 60.093 54.545 5.33 0.00 35.37 3.95
192 193 2.092914 CCCTAACCTACAGCCTTCAAGG 60.093 54.545 0.00 0.00 38.80 3.61
193 194 2.838202 TCCCTAACCTACAGCCTTCAAG 59.162 50.000 0.00 0.00 0.00 3.02
194 195 2.910544 TCCCTAACCTACAGCCTTCAA 58.089 47.619 0.00 0.00 0.00 2.69
195 196 2.634639 TCCCTAACCTACAGCCTTCA 57.365 50.000 0.00 0.00 0.00 3.02
196 197 2.104963 CCATCCCTAACCTACAGCCTTC 59.895 54.545 0.00 0.00 0.00 3.46
197 198 2.127708 CCATCCCTAACCTACAGCCTT 58.872 52.381 0.00 0.00 0.00 4.35
198 199 1.294068 TCCATCCCTAACCTACAGCCT 59.706 52.381 0.00 0.00 0.00 4.58
199 200 1.802553 TCCATCCCTAACCTACAGCC 58.197 55.000 0.00 0.00 0.00 4.85
200 201 3.007398 CAGATCCATCCCTAACCTACAGC 59.993 52.174 0.00 0.00 0.00 4.40
201 202 3.580458 CCAGATCCATCCCTAACCTACAG 59.420 52.174 0.00 0.00 0.00 2.74
202 203 3.587498 CCAGATCCATCCCTAACCTACA 58.413 50.000 0.00 0.00 0.00 2.74
203 204 2.303311 GCCAGATCCATCCCTAACCTAC 59.697 54.545 0.00 0.00 0.00 3.18
204 205 2.621070 GCCAGATCCATCCCTAACCTA 58.379 52.381 0.00 0.00 0.00 3.08
205 206 1.439543 GCCAGATCCATCCCTAACCT 58.560 55.000 0.00 0.00 0.00 3.50
206 207 0.402121 GGCCAGATCCATCCCTAACC 59.598 60.000 0.00 0.00 0.00 2.85
207 208 1.140312 TGGCCAGATCCATCCCTAAC 58.860 55.000 0.00 0.00 0.00 2.34
208 209 1.706866 CATGGCCAGATCCATCCCTAA 59.293 52.381 13.05 0.00 44.63 2.69
209 210 1.365293 CATGGCCAGATCCATCCCTA 58.635 55.000 13.05 0.00 44.63 3.53
210 211 1.432852 CCATGGCCAGATCCATCCCT 61.433 60.000 13.05 0.00 44.63 4.20
211 212 1.076192 CCATGGCCAGATCCATCCC 59.924 63.158 13.05 0.00 44.63 3.85
212 213 1.605738 GCCATGGCCAGATCCATCC 60.606 63.158 27.24 0.00 44.63 3.51
213 214 0.894184 CTGCCATGGCCAGATCCATC 60.894 60.000 33.44 2.83 44.63 3.51
215 216 2.599032 CTGCCATGGCCAGATCCA 59.401 61.111 33.44 12.43 41.09 3.41
216 217 2.910994 GCTGCCATGGCCAGATCC 60.911 66.667 33.44 13.74 41.09 3.36
217 218 2.124024 TGCTGCCATGGCCAGATC 60.124 61.111 33.44 17.26 41.09 2.75
218 219 2.123854 CTGCTGCCATGGCCAGAT 60.124 61.111 33.44 0.00 41.09 2.90
219 220 4.435970 CCTGCTGCCATGGCCAGA 62.436 66.667 32.65 17.65 41.09 3.86
270 271 4.814294 ACGAACTCCATCGCCGGC 62.814 66.667 19.07 19.07 46.51 6.13
271 272 2.885644 CACGAACTCCATCGCCGG 60.886 66.667 0.00 0.00 46.51 6.13
272 273 2.885644 CCACGAACTCCATCGCCG 60.886 66.667 0.00 0.00 46.51 6.46
273 274 1.519455 CTCCACGAACTCCATCGCC 60.519 63.158 0.00 0.00 46.51 5.54
274 275 1.519455 CCTCCACGAACTCCATCGC 60.519 63.158 0.00 0.00 46.51 4.58
276 277 1.153349 GGCCTCCACGAACTCCATC 60.153 63.158 0.00 0.00 0.00 3.51
277 278 2.670148 GGGCCTCCACGAACTCCAT 61.670 63.158 0.84 0.00 0.00 3.41
278 279 3.319198 GGGCCTCCACGAACTCCA 61.319 66.667 0.84 0.00 0.00 3.86
279 280 3.316573 CTGGGCCTCCACGAACTCC 62.317 68.421 4.53 0.00 38.32 3.85
280 281 2.266055 CTGGGCCTCCACGAACTC 59.734 66.667 4.53 0.00 38.32 3.01
281 282 2.526873 ACTGGGCCTCCACGAACT 60.527 61.111 4.53 0.00 38.32 3.01
282 283 2.047179 GACTGGGCCTCCACGAAC 60.047 66.667 4.53 0.00 38.32 3.95
283 284 3.691342 CGACTGGGCCTCCACGAA 61.691 66.667 4.53 0.00 38.32 3.85
286 287 4.767255 CTGCGACTGGGCCTCCAC 62.767 72.222 4.53 0.00 38.32 4.02
289 290 4.828925 GAGCTGCGACTGGGCCTC 62.829 72.222 4.53 0.00 0.00 4.70
322 323 3.545481 CTTCAGCCTACGTGCGCG 61.545 66.667 19.78 19.78 44.93 6.86
323 324 2.552585 TACCTTCAGCCTACGTGCGC 62.553 60.000 0.00 0.00 36.02 6.09
324 325 0.525668 CTACCTTCAGCCTACGTGCG 60.526 60.000 0.00 0.00 36.02 5.34
325 326 0.179108 CCTACCTTCAGCCTACGTGC 60.179 60.000 0.00 0.00 0.00 5.34
326 327 0.460311 CCCTACCTTCAGCCTACGTG 59.540 60.000 0.00 0.00 0.00 4.49
327 328 0.686769 CCCCTACCTTCAGCCTACGT 60.687 60.000 0.00 0.00 0.00 3.57
328 329 0.396695 TCCCCTACCTTCAGCCTACG 60.397 60.000 0.00 0.00 0.00 3.51
329 330 1.694696 CATCCCCTACCTTCAGCCTAC 59.305 57.143 0.00 0.00 0.00 3.18
330 331 1.414538 CCATCCCCTACCTTCAGCCTA 60.415 57.143 0.00 0.00 0.00 3.93
331 332 0.695803 CCATCCCCTACCTTCAGCCT 60.696 60.000 0.00 0.00 0.00 4.58
332 333 0.694444 TCCATCCCCTACCTTCAGCC 60.694 60.000 0.00 0.00 0.00 4.85
333 334 0.761802 CTCCATCCCCTACCTTCAGC 59.238 60.000 0.00 0.00 0.00 4.26
334 335 1.428869 CCTCCATCCCCTACCTTCAG 58.571 60.000 0.00 0.00 0.00 3.02
335 336 0.694444 GCCTCCATCCCCTACCTTCA 60.694 60.000 0.00 0.00 0.00 3.02
336 337 0.694444 TGCCTCCATCCCCTACCTTC 60.694 60.000 0.00 0.00 0.00 3.46
337 338 0.988678 GTGCCTCCATCCCCTACCTT 60.989 60.000 0.00 0.00 0.00 3.50
338 339 1.384643 GTGCCTCCATCCCCTACCT 60.385 63.158 0.00 0.00 0.00 3.08
339 340 2.808206 CGTGCCTCCATCCCCTACC 61.808 68.421 0.00 0.00 0.00 3.18
340 341 0.757935 TACGTGCCTCCATCCCCTAC 60.758 60.000 0.00 0.00 0.00 3.18
341 342 0.031917 TTACGTGCCTCCATCCCCTA 60.032 55.000 0.00 0.00 0.00 3.53
342 343 1.306654 TTACGTGCCTCCATCCCCT 60.307 57.895 0.00 0.00 0.00 4.79
343 344 1.146263 CTTACGTGCCTCCATCCCC 59.854 63.158 0.00 0.00 0.00 4.81
344 345 1.146263 CCTTACGTGCCTCCATCCC 59.854 63.158 0.00 0.00 0.00 3.85
345 346 0.539986 TTCCTTACGTGCCTCCATCC 59.460 55.000 0.00 0.00 0.00 3.51
346 347 1.473434 CCTTCCTTACGTGCCTCCATC 60.473 57.143 0.00 0.00 0.00 3.51
347 348 0.541863 CCTTCCTTACGTGCCTCCAT 59.458 55.000 0.00 0.00 0.00 3.41
348 349 0.543410 TCCTTCCTTACGTGCCTCCA 60.543 55.000 0.00 0.00 0.00 3.86
349 350 0.175989 CTCCTTCCTTACGTGCCTCC 59.824 60.000 0.00 0.00 0.00 4.30
350 351 0.175989 CCTCCTTCCTTACGTGCCTC 59.824 60.000 0.00 0.00 0.00 4.70
351 352 1.900545 GCCTCCTTCCTTACGTGCCT 61.901 60.000 0.00 0.00 0.00 4.75
352 353 1.449778 GCCTCCTTCCTTACGTGCC 60.450 63.158 0.00 0.00 0.00 5.01
353 354 1.810030 CGCCTCCTTCCTTACGTGC 60.810 63.158 0.00 0.00 0.00 5.34
354 355 1.153628 CCGCCTCCTTCCTTACGTG 60.154 63.158 0.00 0.00 0.00 4.49
355 356 2.356780 CCCGCCTCCTTCCTTACGT 61.357 63.158 0.00 0.00 0.00 3.57
356 357 2.499685 CCCGCCTCCTTCCTTACG 59.500 66.667 0.00 0.00 0.00 3.18
357 358 1.054978 ATCCCCGCCTCCTTCCTTAC 61.055 60.000 0.00 0.00 0.00 2.34
358 359 0.763223 GATCCCCGCCTCCTTCCTTA 60.763 60.000 0.00 0.00 0.00 2.69
359 360 2.042930 ATCCCCGCCTCCTTCCTT 59.957 61.111 0.00 0.00 0.00 3.36
360 361 2.446802 GATCCCCGCCTCCTTCCT 60.447 66.667 0.00 0.00 0.00 3.36
361 362 3.930012 CGATCCCCGCCTCCTTCC 61.930 72.222 0.00 0.00 0.00 3.46
428 429 0.931202 GTGTTTACAAACGGCGCACC 60.931 55.000 10.83 0.00 41.74 5.01
429 430 0.028374 AGTGTTTACAAACGGCGCAC 59.972 50.000 10.83 4.16 41.74 5.34
430 431 0.733729 AAGTGTTTACAAACGGCGCA 59.266 45.000 10.83 0.00 41.74 6.09
431 432 1.391787 GAAGTGTTTACAAACGGCGC 58.608 50.000 6.90 0.00 41.74 6.53
432 433 1.334329 GGGAAGTGTTTACAAACGGCG 60.334 52.381 4.80 4.80 41.74 6.46
433 434 1.951602 AGGGAAGTGTTTACAAACGGC 59.048 47.619 0.74 0.00 41.74 5.68
434 435 4.642445 AAAGGGAAGTGTTTACAAACGG 57.358 40.909 0.74 0.00 41.74 4.44
435 436 6.553524 TGTAAAAGGGAAGTGTTTACAAACG 58.446 36.000 5.90 0.00 42.03 3.60
439 440 6.553524 CGTTTGTAAAAGGGAAGTGTTTACA 58.446 36.000 4.55 4.55 42.82 2.41
440 441 5.456497 GCGTTTGTAAAAGGGAAGTGTTTAC 59.544 40.000 0.00 0.00 37.93 2.01
441 442 5.450274 GGCGTTTGTAAAAGGGAAGTGTTTA 60.450 40.000 0.00 0.00 0.00 2.01
442 443 4.426416 GCGTTTGTAAAAGGGAAGTGTTT 58.574 39.130 0.00 0.00 0.00 2.83
443 444 3.181484 GGCGTTTGTAAAAGGGAAGTGTT 60.181 43.478 0.00 0.00 0.00 3.32
444 445 2.359848 GGCGTTTGTAAAAGGGAAGTGT 59.640 45.455 0.00 0.00 0.00 3.55
445 446 2.621526 AGGCGTTTGTAAAAGGGAAGTG 59.378 45.455 0.00 0.00 0.00 3.16
446 447 2.940158 AGGCGTTTGTAAAAGGGAAGT 58.060 42.857 0.00 0.00 0.00 3.01
447 448 4.070009 AGTAGGCGTTTGTAAAAGGGAAG 58.930 43.478 0.00 0.00 0.00 3.46
448 449 4.067192 GAGTAGGCGTTTGTAAAAGGGAA 58.933 43.478 0.00 0.00 0.00 3.97
449 450 3.325716 AGAGTAGGCGTTTGTAAAAGGGA 59.674 43.478 0.00 0.00 0.00 4.20
450 451 3.671716 AGAGTAGGCGTTTGTAAAAGGG 58.328 45.455 0.00 0.00 0.00 3.95
451 452 6.620089 GCTTTAGAGTAGGCGTTTGTAAAAGG 60.620 42.308 0.00 0.00 0.00 3.11
452 453 6.304882 GCTTTAGAGTAGGCGTTTGTAAAAG 58.695 40.000 0.00 0.00 0.00 2.27
463 464 1.950216 GCAATGGGCTTTAGAGTAGGC 59.050 52.381 0.00 0.00 40.25 3.93
501 502 1.278127 TCCGAATCTCCTGTCAAACCC 59.722 52.381 0.00 0.00 0.00 4.11
510 511 1.899437 TTTGCCGCTCCGAATCTCCT 61.899 55.000 0.00 0.00 0.00 3.69
602 603 4.704833 CCTGGCCTGGACACGTGG 62.705 72.222 23.89 1.92 0.00 4.94
732 742 0.394352 GGGTACACAGGCCAGGATTG 60.394 60.000 5.01 0.00 0.00 2.67
739 749 0.537653 GAGAAGAGGGTACACAGGCC 59.462 60.000 0.00 0.00 0.00 5.19
740 750 1.562783 AGAGAAGAGGGTACACAGGC 58.437 55.000 0.00 0.00 0.00 4.85
741 751 3.436243 AGAAGAGAAGAGGGTACACAGG 58.564 50.000 0.00 0.00 0.00 4.00
742 752 5.245075 AGAAAGAAGAGAAGAGGGTACACAG 59.755 44.000 0.00 0.00 0.00 3.66
745 755 4.773149 GGAGAAAGAAGAGAAGAGGGTACA 59.227 45.833 0.00 0.00 0.00 2.90
746 756 4.160814 GGGAGAAAGAAGAGAAGAGGGTAC 59.839 50.000 0.00 0.00 0.00 3.34
747 757 4.202792 TGGGAGAAAGAAGAGAAGAGGGTA 60.203 45.833 0.00 0.00 0.00 3.69
748 758 3.178046 GGGAGAAAGAAGAGAAGAGGGT 58.822 50.000 0.00 0.00 0.00 4.34
749 759 3.177228 TGGGAGAAAGAAGAGAAGAGGG 58.823 50.000 0.00 0.00 0.00 4.30
750 760 6.554605 AGATATGGGAGAAAGAAGAGAAGAGG 59.445 42.308 0.00 0.00 0.00 3.69
751 761 7.522073 CGAGATATGGGAGAAAGAAGAGAAGAG 60.522 44.444 0.00 0.00 0.00 2.85
753 763 6.040391 ACGAGATATGGGAGAAAGAAGAGAAG 59.960 42.308 0.00 0.00 0.00 2.85
772 782 4.770010 AGAAGAGAAGGAAAGACACGAGAT 59.230 41.667 0.00 0.00 0.00 2.75
776 786 4.244425 TGAGAAGAGAAGGAAAGACACG 57.756 45.455 0.00 0.00 0.00 4.49
881 891 3.828875 ATCCATCGAAAACTCCTCTCC 57.171 47.619 0.00 0.00 0.00 3.71
911 936 4.439563 GCGTTCCGGAACCAATTAATCAAT 60.440 41.667 35.50 0.00 38.03 2.57
912 937 3.119779 GCGTTCCGGAACCAATTAATCAA 60.120 43.478 35.50 0.10 38.03 2.57
913 938 2.420722 GCGTTCCGGAACCAATTAATCA 59.579 45.455 35.50 0.33 38.03 2.57
914 939 2.223409 GGCGTTCCGGAACCAATTAATC 60.223 50.000 35.50 16.73 38.03 1.75
915 940 1.746787 GGCGTTCCGGAACCAATTAAT 59.253 47.619 35.50 0.00 38.03 1.40
916 941 1.166989 GGCGTTCCGGAACCAATTAA 58.833 50.000 35.50 2.56 38.03 1.40
917 942 2.857254 GGCGTTCCGGAACCAATTA 58.143 52.632 35.50 3.40 38.03 1.40
918 943 3.676216 GGCGTTCCGGAACCAATT 58.324 55.556 35.50 0.00 38.03 2.32
1189 1233 0.394352 AAGGCACGGATCAACCCATC 60.394 55.000 0.00 0.00 34.64 3.51
1254 1298 6.827251 GGAAACCTAATCCGATAACTCCTTTT 59.173 38.462 0.00 0.00 0.00 2.27
1261 1305 4.275196 GGCAAGGAAACCTAATCCGATAAC 59.725 45.833 0.00 0.00 42.03 1.89
1339 1384 5.034554 ACTAGCAATCAAACACATGAACG 57.965 39.130 0.00 0.00 32.06 3.95
1386 1431 2.307496 TCATCAGGGCATGTTGGTTT 57.693 45.000 10.00 0.00 30.78 3.27
1387 1432 2.024655 AGATCATCAGGGCATGTTGGTT 60.025 45.455 10.00 0.00 30.78 3.67
1388 1433 1.567649 AGATCATCAGGGCATGTTGGT 59.432 47.619 10.00 2.99 30.78 3.67
1389 1434 2.359981 AGATCATCAGGGCATGTTGG 57.640 50.000 10.00 0.00 30.78 3.77
1390 1435 5.840243 TTTTAGATCATCAGGGCATGTTG 57.160 39.130 3.92 3.92 0.00 3.33
1410 1455 2.971330 TCATCAGGGCATGTTGGTTTTT 59.029 40.909 10.00 0.00 30.78 1.94
1411 1456 2.607499 TCATCAGGGCATGTTGGTTTT 58.393 42.857 10.00 0.00 30.78 2.43
1412 1457 2.307496 TCATCAGGGCATGTTGGTTT 57.693 45.000 10.00 0.00 30.78 3.27
1413 1458 2.024655 AGATCATCAGGGCATGTTGGTT 60.025 45.455 10.00 0.00 30.78 3.67
1414 1459 1.567649 AGATCATCAGGGCATGTTGGT 59.432 47.619 10.00 2.99 30.78 3.67
1415 1460 2.359981 AGATCATCAGGGCATGTTGG 57.640 50.000 10.00 0.00 30.78 3.77
1416 1461 5.840243 TTTTAGATCATCAGGGCATGTTG 57.160 39.130 3.92 3.92 0.00 3.33
1528 2878 6.600822 GGGGAATATTCATCCATATGTCACTG 59.399 42.308 17.07 0.00 38.80 3.66
1595 2945 5.577835 TGTACTTGACAACTGAATGCAAAC 58.422 37.500 0.00 0.00 34.15 2.93
1657 3032 1.078214 GATAGTGCCAGTGCCAGCA 60.078 57.895 0.00 0.00 36.33 4.41
1658 3033 1.821332 GGATAGTGCCAGTGCCAGC 60.821 63.158 0.00 0.00 36.33 4.85
1659 3034 0.179062 GAGGATAGTGCCAGTGCCAG 60.179 60.000 0.00 0.00 36.33 4.85
1660 3035 1.907739 GAGGATAGTGCCAGTGCCA 59.092 57.895 0.00 0.00 36.33 4.92
1661 3036 1.227380 CGAGGATAGTGCCAGTGCC 60.227 63.158 0.00 0.00 36.33 5.01
1662 3037 0.108138 AACGAGGATAGTGCCAGTGC 60.108 55.000 0.00 0.00 38.26 4.40
1663 3038 3.520290 TTAACGAGGATAGTGCCAGTG 57.480 47.619 0.00 0.00 0.00 3.66
1664 3039 5.864418 TTATTAACGAGGATAGTGCCAGT 57.136 39.130 0.00 0.00 0.00 4.00
1666 3041 6.474140 TCTTTATTAACGAGGATAGTGCCA 57.526 37.500 0.00 0.00 0.00 4.92
1667 3042 7.781548 TTTCTTTATTAACGAGGATAGTGCC 57.218 36.000 0.00 0.00 0.00 5.01
1674 3049 9.472361 CGAGGATAATTTCTTTATTAACGAGGA 57.528 33.333 0.00 0.00 30.44 3.71
1675 3050 9.257651 ACGAGGATAATTTCTTTATTAACGAGG 57.742 33.333 0.00 0.00 30.44 4.63
1724 3107 5.947228 AAACTTCAAATCATCGAGAGCAA 57.053 34.783 0.00 0.00 0.00 3.91
2016 3399 4.219070 TGTTGAATGGAGAGCAAGAAATGG 59.781 41.667 0.00 0.00 0.00 3.16
2155 3538 3.256704 AGTTAAGAGGATTCCACCCACA 58.743 45.455 5.29 0.00 0.00 4.17
2191 3574 6.292811 CGCAAAAACCAAACATATTGAAGCTT 60.293 34.615 0.00 0.00 0.00 3.74
2342 3725 8.506168 TCTTTGTTGTAAAACTGAGACAGATT 57.494 30.769 5.76 0.00 35.18 2.40
2392 3775 7.137490 ACTATGAAACATCACATGACAACAG 57.863 36.000 0.00 0.00 0.00 3.16
2501 3887 6.429078 AGATCGTACTTGATTGCGGTACTATA 59.571 38.462 0.00 0.00 35.17 1.31
2541 3927 4.573900 AGAACAGCAAATCACCTCACTAG 58.426 43.478 0.00 0.00 0.00 2.57
2549 3935 7.761651 AAGAAGAAAAAGAACAGCAAATCAC 57.238 32.000 0.00 0.00 0.00 3.06
2573 3960 4.133820 AGTACACTGTGTTAATGCTGCAA 58.866 39.130 19.73 0.00 0.00 4.08
2819 4206 2.428890 CGGAATAGAGCCTCACACTCTT 59.571 50.000 0.00 0.00 41.79 2.85
2868 4255 1.476110 GGTACCAGTTTGTCAGTGCCA 60.476 52.381 7.15 0.00 35.34 4.92
3021 4408 3.001514 GGCCTGCTGGGAGATCAA 58.998 61.111 12.06 0.00 37.23 2.57
3089 4476 2.831685 TCTCTTGCTTTTCGCCTACA 57.168 45.000 0.00 0.00 38.05 2.74
3152 4539 7.765360 CCCAAATGCTGTGTGTTCATTATTATT 59.235 33.333 0.00 0.00 30.98 1.40
3153 4540 7.267128 CCCAAATGCTGTGTGTTCATTATTAT 58.733 34.615 0.00 0.00 30.98 1.28
3154 4541 6.350864 CCCCAAATGCTGTGTGTTCATTATTA 60.351 38.462 0.00 0.00 30.98 0.98
3286 4673 1.667212 GTTCCACGAAGAACAAACCGT 59.333 47.619 14.56 0.00 44.55 4.83
3384 4774 3.560481 GCGTCAGTAGTCAGATGCTACTA 59.440 47.826 13.12 0.00 45.02 1.82
3409 4799 4.082026 GCCCAAATTTCAACAGCAGTCTAT 60.082 41.667 0.00 0.00 0.00 1.98
3410 4800 3.255642 GCCCAAATTTCAACAGCAGTCTA 59.744 43.478 0.00 0.00 0.00 2.59
3462 4852 2.557056 TGGTCACCGTCAACAACAAAAA 59.443 40.909 0.00 0.00 0.00 1.94
3464 4854 1.822506 TGGTCACCGTCAACAACAAA 58.177 45.000 0.00 0.00 0.00 2.83
3465 4855 1.673400 CATGGTCACCGTCAACAACAA 59.327 47.619 0.00 0.00 0.00 2.83
3466 4856 1.304254 CATGGTCACCGTCAACAACA 58.696 50.000 0.00 0.00 0.00 3.33
3467 4857 0.591170 CCATGGTCACCGTCAACAAC 59.409 55.000 2.57 0.00 0.00 3.32
3470 4860 1.577328 CTGCCATGGTCACCGTCAAC 61.577 60.000 14.67 0.00 0.00 3.18
3473 4866 2.436646 CCTGCCATGGTCACCGTC 60.437 66.667 14.67 0.00 0.00 4.79
3529 4922 5.342806 TGTATCGTCTTCTGTTTTTGCAG 57.657 39.130 0.00 0.00 37.81 4.41
3583 8117 4.307432 CTGTGGTGTTGTATCGTCTTCTT 58.693 43.478 0.00 0.00 0.00 2.52
3609 8143 0.892755 TCGCCTCGTCCTACATGTTT 59.107 50.000 2.30 0.00 0.00 2.83
3627 8161 2.899339 GAGCCTGGGCAGCGAATC 60.899 66.667 14.39 0.00 44.88 2.52
3628 8162 3.694058 CTGAGCCTGGGCAGCGAAT 62.694 63.158 14.39 0.00 44.88 3.34
3629 8163 4.399395 CTGAGCCTGGGCAGCGAA 62.399 66.667 14.39 0.00 44.88 4.70
3633 8167 1.980784 ATGTAGCTGAGCCTGGGCAG 61.981 60.000 14.39 4.59 44.88 4.85
3634 8168 1.976132 GATGTAGCTGAGCCTGGGCA 61.976 60.000 14.39 0.00 44.88 5.36
3636 8170 1.449353 GGATGTAGCTGAGCCTGGG 59.551 63.158 0.00 0.00 0.00 4.45
3637 8171 1.068753 CGGATGTAGCTGAGCCTGG 59.931 63.158 0.00 0.00 0.00 4.45
3638 8172 1.593750 GCGGATGTAGCTGAGCCTG 60.594 63.158 0.00 0.00 0.00 4.85
3639 8173 2.818132 GCGGATGTAGCTGAGCCT 59.182 61.111 0.00 0.00 0.00 4.58
3640 8174 2.427540 ATCGCGGATGTAGCTGAGCC 62.428 60.000 6.13 0.00 0.00 4.70
3641 8175 1.006805 ATCGCGGATGTAGCTGAGC 60.007 57.895 6.13 0.00 0.00 4.26
3643 8177 0.744281 TTCATCGCGGATGTAGCTGA 59.256 50.000 6.13 0.00 40.55 4.26
3644 8178 0.855349 GTTCATCGCGGATGTAGCTG 59.145 55.000 6.13 0.00 40.55 4.24
3645 8179 0.459899 TGTTCATCGCGGATGTAGCT 59.540 50.000 6.13 0.00 40.55 3.32
3647 8181 2.492019 TCTGTTCATCGCGGATGTAG 57.508 50.000 6.13 9.30 40.55 2.74
3648 8182 2.951457 TTCTGTTCATCGCGGATGTA 57.049 45.000 6.13 0.00 40.55 2.29
3649 8183 2.093306 TTTCTGTTCATCGCGGATGT 57.907 45.000 6.13 0.00 40.55 3.06
3650 8184 3.680642 ATTTTCTGTTCATCGCGGATG 57.319 42.857 6.13 9.24 41.00 3.51
3651 8185 3.689161 TGAATTTTCTGTTCATCGCGGAT 59.311 39.130 6.13 0.00 31.07 4.18
3652 8186 3.070748 TGAATTTTCTGTTCATCGCGGA 58.929 40.909 6.13 0.00 31.07 5.54
3653 8187 3.469899 TGAATTTTCTGTTCATCGCGG 57.530 42.857 6.13 0.00 31.07 6.46
3654 8188 5.804449 TTTTGAATTTTCTGTTCATCGCG 57.196 34.783 0.00 0.00 35.68 5.87
3683 8217 3.363970 GCAGAAACGATACAACACCAGTG 60.364 47.826 0.00 0.00 0.00 3.66
3684 8218 2.806244 GCAGAAACGATACAACACCAGT 59.194 45.455 0.00 0.00 0.00 4.00
3685 8219 2.159627 GGCAGAAACGATACAACACCAG 59.840 50.000 0.00 0.00 0.00 4.00
3686 8220 2.147958 GGCAGAAACGATACAACACCA 58.852 47.619 0.00 0.00 0.00 4.17
3687 8221 2.159627 CAGGCAGAAACGATACAACACC 59.840 50.000 0.00 0.00 0.00 4.16
3688 8222 3.064207 TCAGGCAGAAACGATACAACAC 58.936 45.455 0.00 0.00 0.00 3.32
3689 8223 3.394674 TCAGGCAGAAACGATACAACA 57.605 42.857 0.00 0.00 0.00 3.33
3690 8224 3.746492 AGTTCAGGCAGAAACGATACAAC 59.254 43.478 0.00 0.00 38.13 3.32
3691 8225 4.002906 AGTTCAGGCAGAAACGATACAA 57.997 40.909 0.00 0.00 38.13 2.41
3692 8226 3.678056 AGTTCAGGCAGAAACGATACA 57.322 42.857 0.00 0.00 38.13 2.29
3693 8227 3.994392 TGAAGTTCAGGCAGAAACGATAC 59.006 43.478 0.08 0.00 38.13 2.24
3694 8228 4.265904 TGAAGTTCAGGCAGAAACGATA 57.734 40.909 0.08 0.00 38.13 2.92
3695 8229 3.126001 TGAAGTTCAGGCAGAAACGAT 57.874 42.857 0.08 0.00 38.13 3.73
3696 8230 2.613026 TGAAGTTCAGGCAGAAACGA 57.387 45.000 0.08 0.00 38.13 3.85
3697 8231 3.691049 TTTGAAGTTCAGGCAGAAACG 57.309 42.857 5.56 0.00 38.13 3.60
3698 8232 7.540055 CAGATTATTTGAAGTTCAGGCAGAAAC 59.460 37.037 5.56 0.00 38.13 2.78
3699 8233 7.448161 TCAGATTATTTGAAGTTCAGGCAGAAA 59.552 33.333 5.56 0.00 38.13 2.52
3700 8234 6.942005 TCAGATTATTTGAAGTTCAGGCAGAA 59.058 34.615 5.56 0.00 0.00 3.02
3701 8235 6.475504 TCAGATTATTTGAAGTTCAGGCAGA 58.524 36.000 5.56 0.00 0.00 4.26
3702 8236 6.748333 TCAGATTATTTGAAGTTCAGGCAG 57.252 37.500 5.56 0.00 0.00 4.85
3703 8237 7.523293 TTTCAGATTATTTGAAGTTCAGGCA 57.477 32.000 5.56 0.00 36.07 4.75
3704 8238 8.992835 AATTTCAGATTATTTGAAGTTCAGGC 57.007 30.769 5.56 0.00 36.07 4.85
3713 8247 7.062138 GTGCGCTTCAAATTTCAGATTATTTGA 59.938 33.333 9.73 13.43 44.59 2.69
3714 8248 7.168796 GTGCGCTTCAAATTTCAGATTATTTG 58.831 34.615 9.73 10.33 41.08 2.32
3715 8249 6.311200 GGTGCGCTTCAAATTTCAGATTATTT 59.689 34.615 9.73 0.00 0.00 1.40
3716 8250 5.807011 GGTGCGCTTCAAATTTCAGATTATT 59.193 36.000 9.73 0.00 0.00 1.40
3717 8251 5.126061 AGGTGCGCTTCAAATTTCAGATTAT 59.874 36.000 9.73 0.00 0.00 1.28
3718 8252 4.458989 AGGTGCGCTTCAAATTTCAGATTA 59.541 37.500 9.73 0.00 0.00 1.75
3719 8253 3.256631 AGGTGCGCTTCAAATTTCAGATT 59.743 39.130 9.73 0.00 0.00 2.40
3720 8254 2.821969 AGGTGCGCTTCAAATTTCAGAT 59.178 40.909 9.73 0.00 0.00 2.90
3721 8255 2.226437 GAGGTGCGCTTCAAATTTCAGA 59.774 45.455 9.73 0.00 0.00 3.27
3722 8256 2.030893 TGAGGTGCGCTTCAAATTTCAG 60.031 45.455 9.94 0.00 0.00 3.02
3723 8257 1.952990 TGAGGTGCGCTTCAAATTTCA 59.047 42.857 9.94 0.00 0.00 2.69
3724 8258 2.319472 GTGAGGTGCGCTTCAAATTTC 58.681 47.619 14.19 0.00 32.39 2.17
3725 8259 1.334960 CGTGAGGTGCGCTTCAAATTT 60.335 47.619 14.19 0.00 32.39 1.82
3726 8260 0.238289 CGTGAGGTGCGCTTCAAATT 59.762 50.000 14.19 0.00 32.39 1.82
3727 8261 1.868997 CGTGAGGTGCGCTTCAAAT 59.131 52.632 14.19 0.00 32.39 2.32
3728 8262 3.329231 CGTGAGGTGCGCTTCAAA 58.671 55.556 14.19 0.00 32.39 2.69
3735 8269 0.168788 AATTTGATGCGTGAGGTGCG 59.831 50.000 0.00 0.00 34.24 5.34
3736 8270 3.313526 AGATAATTTGATGCGTGAGGTGC 59.686 43.478 0.00 0.00 0.00 5.01
3737 8271 5.490139 AAGATAATTTGATGCGTGAGGTG 57.510 39.130 0.00 0.00 0.00 4.00
3738 8272 4.576463 GGAAGATAATTTGATGCGTGAGGT 59.424 41.667 0.00 0.00 0.00 3.85
3739 8273 4.576053 TGGAAGATAATTTGATGCGTGAGG 59.424 41.667 0.00 0.00 0.00 3.86
3740 8274 5.739752 TGGAAGATAATTTGATGCGTGAG 57.260 39.130 0.00 0.00 0.00 3.51
3741 8275 5.506151 GCATGGAAGATAATTTGATGCGTGA 60.506 40.000 0.00 0.00 0.00 4.35
3742 8276 4.678287 GCATGGAAGATAATTTGATGCGTG 59.322 41.667 0.00 0.00 0.00 5.34
3743 8277 4.338964 TGCATGGAAGATAATTTGATGCGT 59.661 37.500 0.00 0.00 38.02 5.24
3744 8278 4.862350 TGCATGGAAGATAATTTGATGCG 58.138 39.130 0.00 0.00 38.02 4.73
3745 8279 7.724305 AATTGCATGGAAGATAATTTGATGC 57.276 32.000 5.69 0.00 36.19 3.91
3746 8280 9.929722 CAAAATTGCATGGAAGATAATTTGATG 57.070 29.630 5.69 0.00 32.92 3.07
3747 8281 9.675464 ACAAAATTGCATGGAAGATAATTTGAT 57.325 25.926 20.65 10.13 32.92 2.57
3748 8282 9.504708 AACAAAATTGCATGGAAGATAATTTGA 57.495 25.926 20.65 0.00 32.92 2.69
3752 8286 8.658609 CGAAAACAAAATTGCATGGAAGATAAT 58.341 29.630 5.69 0.00 0.00 1.28
3753 8287 7.869937 TCGAAAACAAAATTGCATGGAAGATAA 59.130 29.630 5.69 0.00 0.00 1.75
3754 8288 7.374272 TCGAAAACAAAATTGCATGGAAGATA 58.626 30.769 5.69 0.00 0.00 1.98
3755 8289 6.222389 TCGAAAACAAAATTGCATGGAAGAT 58.778 32.000 5.69 0.00 0.00 2.40
3756 8290 5.595885 TCGAAAACAAAATTGCATGGAAGA 58.404 33.333 5.69 0.00 0.00 2.87
3757 8291 5.903764 TCGAAAACAAAATTGCATGGAAG 57.096 34.783 5.69 0.00 0.00 3.46
3758 8292 6.857777 ATTCGAAAACAAAATTGCATGGAA 57.142 29.167 0.00 0.79 0.00 3.53
3759 8293 6.857777 AATTCGAAAACAAAATTGCATGGA 57.142 29.167 0.00 0.00 0.00 3.41
3760 8294 7.856894 AGAAAATTCGAAAACAAAATTGCATGG 59.143 29.630 0.00 0.00 0.00 3.66
3761 8295 8.770850 AGAAAATTCGAAAACAAAATTGCATG 57.229 26.923 0.00 0.00 0.00 4.06
3762 8296 8.829612 AGAGAAAATTCGAAAACAAAATTGCAT 58.170 25.926 0.00 0.00 0.00 3.96
3763 8297 8.195617 AGAGAAAATTCGAAAACAAAATTGCA 57.804 26.923 0.00 0.00 0.00 4.08
3764 8298 9.147364 GAAGAGAAAATTCGAAAACAAAATTGC 57.853 29.630 0.00 0.00 0.00 3.56
3767 8301 8.817100 GGTGAAGAGAAAATTCGAAAACAAAAT 58.183 29.630 0.00 0.00 0.00 1.82
3768 8302 7.008810 CGGTGAAGAGAAAATTCGAAAACAAAA 59.991 33.333 0.00 0.00 0.00 2.44
3769 8303 6.470877 CGGTGAAGAGAAAATTCGAAAACAAA 59.529 34.615 0.00 0.00 0.00 2.83
3770 8304 5.968848 CGGTGAAGAGAAAATTCGAAAACAA 59.031 36.000 0.00 0.00 0.00 2.83
3771 8305 5.504994 CCGGTGAAGAGAAAATTCGAAAACA 60.505 40.000 0.00 0.00 0.00 2.83
3772 8306 4.909880 CCGGTGAAGAGAAAATTCGAAAAC 59.090 41.667 0.00 0.00 0.00 2.43
3773 8307 4.023536 CCCGGTGAAGAGAAAATTCGAAAA 60.024 41.667 0.00 0.00 0.00 2.29
3774 8308 3.500680 CCCGGTGAAGAGAAAATTCGAAA 59.499 43.478 0.00 0.00 0.00 3.46
3775 8309 3.071479 CCCGGTGAAGAGAAAATTCGAA 58.929 45.455 0.00 0.00 0.00 3.71
3776 8310 2.038033 ACCCGGTGAAGAGAAAATTCGA 59.962 45.455 0.00 0.00 0.00 3.71
3777 8311 2.159627 CACCCGGTGAAGAGAAAATTCG 59.840 50.000 12.68 0.00 35.23 3.34
3778 8312 2.095212 GCACCCGGTGAAGAGAAAATTC 60.095 50.000 22.37 0.00 35.23 2.17
3779 8313 1.886542 GCACCCGGTGAAGAGAAAATT 59.113 47.619 22.37 0.00 35.23 1.82
3780 8314 1.202879 TGCACCCGGTGAAGAGAAAAT 60.203 47.619 22.37 0.00 35.23 1.82
3781 8315 0.181587 TGCACCCGGTGAAGAGAAAA 59.818 50.000 22.37 0.00 35.23 2.29
3782 8316 0.250295 CTGCACCCGGTGAAGAGAAA 60.250 55.000 20.02 0.00 41.52 2.52
3783 8317 1.118965 TCTGCACCCGGTGAAGAGAA 61.119 55.000 22.87 2.73 42.67 2.87
3784 8318 1.533033 TCTGCACCCGGTGAAGAGA 60.533 57.895 22.87 15.29 42.67 3.10
3785 8319 3.059982 TCTGCACCCGGTGAAGAG 58.940 61.111 22.87 13.39 42.67 2.85
3787 8321 0.742281 CTCATCTGCACCCGGTGAAG 60.742 60.000 22.37 20.50 40.40 3.02
3788 8322 1.296392 CTCATCTGCACCCGGTGAA 59.704 57.895 22.37 10.33 35.23 3.18
3789 8323 2.981302 CTCATCTGCACCCGGTGA 59.019 61.111 22.37 5.69 35.23 4.02
3790 8324 2.821366 GCTCATCTGCACCCGGTG 60.821 66.667 13.71 13.71 36.51 4.94
3791 8325 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
3792 8326 2.374830 CTAGGCTCATCTGCACCCGG 62.375 65.000 0.00 0.00 34.04 5.73
3793 8327 1.068753 CTAGGCTCATCTGCACCCG 59.931 63.158 0.00 0.00 34.04 5.28
3794 8328 1.449353 CCTAGGCTCATCTGCACCC 59.551 63.158 0.00 0.00 34.04 4.61
3795 8329 1.227793 GCCTAGGCTCATCTGCACC 60.228 63.158 27.17 0.00 38.26 5.01
3796 8330 4.453093 GCCTAGGCTCATCTGCAC 57.547 61.111 27.17 0.00 38.26 4.57
3806 8340 5.582665 CGAATATCCATTTCTAAGCCTAGGC 59.417 44.000 27.19 27.19 42.33 3.93
3807 8341 5.582665 GCGAATATCCATTTCTAAGCCTAGG 59.417 44.000 3.67 3.67 0.00 3.02
3808 8342 6.166279 TGCGAATATCCATTTCTAAGCCTAG 58.834 40.000 0.00 0.00 0.00 3.02
3809 8343 6.109156 TGCGAATATCCATTTCTAAGCCTA 57.891 37.500 0.00 0.00 0.00 3.93
3810 8344 4.973168 TGCGAATATCCATTTCTAAGCCT 58.027 39.130 0.00 0.00 0.00 4.58
3811 8345 5.008613 TGTTGCGAATATCCATTTCTAAGCC 59.991 40.000 0.00 0.00 0.00 4.35
3812 8346 6.060028 TGTTGCGAATATCCATTTCTAAGC 57.940 37.500 0.00 0.00 0.00 3.09
3815 8349 9.098355 GCTATATGTTGCGAATATCCATTTCTA 57.902 33.333 0.00 0.00 0.00 2.10
3816 8350 7.607607 TGCTATATGTTGCGAATATCCATTTCT 59.392 33.333 0.00 0.00 0.00 2.52
3817 8351 7.693951 GTGCTATATGTTGCGAATATCCATTTC 59.306 37.037 0.00 0.00 0.00 2.17
3818 8352 7.174772 TGTGCTATATGTTGCGAATATCCATTT 59.825 33.333 0.00 0.00 0.00 2.32
3819 8353 6.654582 TGTGCTATATGTTGCGAATATCCATT 59.345 34.615 0.00 0.00 0.00 3.16
3820 8354 6.092670 GTGTGCTATATGTTGCGAATATCCAT 59.907 38.462 0.00 0.00 0.00 3.41
3821 8355 5.408299 GTGTGCTATATGTTGCGAATATCCA 59.592 40.000 0.00 0.00 0.00 3.41
3822 8356 5.408299 TGTGTGCTATATGTTGCGAATATCC 59.592 40.000 0.00 0.00 0.00 2.59
3823 8357 6.466308 TGTGTGCTATATGTTGCGAATATC 57.534 37.500 0.00 0.00 0.00 1.63
3824 8358 6.859420 TTGTGTGCTATATGTTGCGAATAT 57.141 33.333 0.00 0.00 0.00 1.28
3825 8359 6.536941 TCTTTGTGTGCTATATGTTGCGAATA 59.463 34.615 0.00 0.00 0.00 1.75
3826 8360 5.353956 TCTTTGTGTGCTATATGTTGCGAAT 59.646 36.000 0.00 0.00 0.00 3.34
3827 8361 4.693095 TCTTTGTGTGCTATATGTTGCGAA 59.307 37.500 0.00 0.00 0.00 4.70
3828 8362 4.249661 TCTTTGTGTGCTATATGTTGCGA 58.750 39.130 0.00 0.00 0.00 5.10
3829 8363 4.598406 TCTTTGTGTGCTATATGTTGCG 57.402 40.909 0.00 0.00 0.00 4.85
3830 8364 6.611381 TCTTTCTTTGTGTGCTATATGTTGC 58.389 36.000 0.00 0.00 0.00 4.17
3831 8365 8.506437 TCTTCTTTCTTTGTGTGCTATATGTTG 58.494 33.333 0.00 0.00 0.00 3.33
3832 8366 8.621532 TCTTCTTTCTTTGTGTGCTATATGTT 57.378 30.769 0.00 0.00 0.00 2.71
3833 8367 7.335422 CCTCTTCTTTCTTTGTGTGCTATATGT 59.665 37.037 0.00 0.00 0.00 2.29
3834 8368 7.550551 TCCTCTTCTTTCTTTGTGTGCTATATG 59.449 37.037 0.00 0.00 0.00 1.78
3835 8369 7.624549 TCCTCTTCTTTCTTTGTGTGCTATAT 58.375 34.615 0.00 0.00 0.00 0.86
3836 8370 7.004555 TCCTCTTCTTTCTTTGTGTGCTATA 57.995 36.000 0.00 0.00 0.00 1.31
3837 8371 5.869579 TCCTCTTCTTTCTTTGTGTGCTAT 58.130 37.500 0.00 0.00 0.00 2.97
3838 8372 5.290493 TCCTCTTCTTTCTTTGTGTGCTA 57.710 39.130 0.00 0.00 0.00 3.49
3839 8373 4.156455 TCCTCTTCTTTCTTTGTGTGCT 57.844 40.909 0.00 0.00 0.00 4.40
3840 8374 4.900635 TTCCTCTTCTTTCTTTGTGTGC 57.099 40.909 0.00 0.00 0.00 4.57
3841 8375 7.260603 ACATTTTCCTCTTCTTTCTTTGTGTG 58.739 34.615 0.00 0.00 0.00 3.82
3842 8376 7.410120 ACATTTTCCTCTTCTTTCTTTGTGT 57.590 32.000 0.00 0.00 0.00 3.72
3857 8391 9.661954 TGGTTCTCTCTCTATATACATTTTCCT 57.338 33.333 0.00 0.00 0.00 3.36
3866 8400 9.601217 GCTTGTTTTTGGTTCTCTCTCTATATA 57.399 33.333 0.00 0.00 0.00 0.86
3868 8402 6.879458 GGCTTGTTTTTGGTTCTCTCTCTATA 59.121 38.462 0.00 0.00 0.00 1.31
3884 8419 2.990514 GTTGTTTGTCGTGGCTTGTTTT 59.009 40.909 0.00 0.00 0.00 2.43
3889 8424 0.738389 CTGGTTGTTTGTCGTGGCTT 59.262 50.000 0.00 0.00 0.00 4.35
3893 8428 0.248458 GGTGCTGGTTGTTTGTCGTG 60.248 55.000 0.00 0.00 0.00 4.35
3904 8439 3.689649 GTGATAAATTTCTCGGTGCTGGT 59.310 43.478 0.00 0.00 0.00 4.00
3990 8525 9.421399 TCATCATGTTATGTCTTCTCTTAGGTA 57.579 33.333 0.00 0.00 0.00 3.08
4000 8535 9.685276 TTACCTTTGATCATCATGTTATGTCTT 57.315 29.630 0.00 0.00 0.00 3.01
4049 8587 2.044806 ATATGCTGGGCTCCGTGGTC 62.045 60.000 0.00 0.00 0.00 4.02
4050 8588 0.762842 TATATGCTGGGCTCCGTGGT 60.763 55.000 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.