Multiple sequence alignment - TraesCS7A01G323400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G323400 chr7A 100.000 2582 0 0 1 2582 470601549 470598968 0.000000e+00 4769
1 TraesCS7A01G323400 chr7A 100.000 2335 0 0 2875 5209 470598675 470596341 0.000000e+00 4313
2 TraesCS7A01G323400 chr7A 98.137 161 3 0 1 161 162090317 162090157 1.100000e-71 281
3 TraesCS7A01G323400 chr7A 98.137 161 3 0 1 161 470790099 470789939 1.100000e-71 281
4 TraesCS7A01G323400 chr7A 97.516 161 4 0 1 161 470682957 470682797 5.140000e-70 276
5 TraesCS7A01G323400 chr7D 94.809 1830 69 19 763 2582 409516253 409514440 0.000000e+00 2830
6 TraesCS7A01G323400 chr7D 91.531 1169 62 14 3355 4511 409513895 409512752 0.000000e+00 1576
7 TraesCS7A01G323400 chr7D 93.763 481 23 6 2878 3355 409514405 409513929 0.000000e+00 715
8 TraesCS7A01G323400 chr7D 93.182 440 14 5 4772 5209 409512415 409511990 2.650000e-177 632
9 TraesCS7A01G323400 chr7D 87.393 468 48 7 162 628 409517169 409516712 1.280000e-145 527
10 TraesCS7A01G323400 chr7D 92.975 242 15 1 4550 4789 409512684 409512443 8.300000e-93 351
11 TraesCS7A01G323400 chr7B 86.618 2339 155 84 163 2416 424065377 424063112 0.000000e+00 2440
12 TraesCS7A01G323400 chr7B 84.279 916 89 25 3613 4510 424061945 424061067 0.000000e+00 843
13 TraesCS7A01G323400 chr7B 96.591 440 13 1 4772 5209 424060738 424060299 0.000000e+00 728
14 TraesCS7A01G323400 chr7B 92.149 242 16 1 4548 4789 424061004 424060766 6.460000e-89 339
15 TraesCS7A01G323400 chr7B 83.688 282 29 7 2921 3195 424062849 424062578 3.110000e-62 250
16 TraesCS7A01G323400 chr5B 98.137 161 3 0 1 161 626172059 626171899 1.100000e-71 281
17 TraesCS7A01G323400 chr1D 98.137 161 3 0 1 161 481593276 481593116 1.100000e-71 281
18 TraesCS7A01G323400 chr2D 97.516 161 4 0 1 161 380928530 380928370 5.140000e-70 276
19 TraesCS7A01G323400 chr2A 97.516 161 4 0 1 161 419453828 419453668 5.140000e-70 276
20 TraesCS7A01G323400 chr2A 97.516 161 4 0 1 161 755923886 755924046 5.140000e-70 276
21 TraesCS7A01G323400 chr1A 95.833 168 6 1 1 168 520362992 520363158 2.390000e-68 270


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G323400 chr7A 470596341 470601549 5208 True 4541.000000 4769 100.0000 1 5209 2 chr7A.!!$R4 5208
1 TraesCS7A01G323400 chr7D 409511990 409517169 5179 True 1105.166667 2830 92.2755 162 5209 6 chr7D.!!$R1 5047
2 TraesCS7A01G323400 chr7B 424060299 424065377 5078 True 920.000000 2440 88.6650 163 5209 5 chr7B.!!$R1 5046

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 678 0.035152 TTGATGCAGCTTGATCCCGT 60.035 50.000 2.53 0.0 0.00 5.28 F
699 747 0.108186 TCATCTGTGCCATCGGTGAC 60.108 55.000 0.00 0.0 0.00 3.67 F
873 1207 0.966179 GGCCCAAATTTGAAGACGGT 59.034 50.000 19.86 0.0 0.00 4.83 F
1206 1541 1.000612 GGAGGTCTTCGTCTCCCCT 59.999 63.158 0.00 0.0 42.72 4.79 F
2229 2590 0.470766 TTTCCGGCACAACCTGTACT 59.529 50.000 0.00 0.0 35.61 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1904 0.109179 TTGCTGACATGGCGCAAATC 60.109 50.0 22.69 0.2 40.33 2.17 R
2212 2573 0.250124 CAAGTACAGGTTGTGCCGGA 60.250 55.0 5.05 0.0 43.70 5.14 R
2213 2574 0.534203 ACAAGTACAGGTTGTGCCGG 60.534 55.0 0.00 0.0 43.70 6.13 R
2444 2805 0.617413 ACCATCCACAGGAAGAGCTG 59.383 55.0 0.00 0.0 34.34 4.24 R
4222 4857 0.107081 TACCACAACACAACCGGGAG 59.893 55.0 6.32 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.495422 ACTTATGCTAGCCGTATATGTGC 58.505 43.478 13.29 0.00 30.89 4.57
24 25 4.220821 ACTTATGCTAGCCGTATATGTGCT 59.779 41.667 13.29 11.23 39.10 4.40
25 26 2.438868 TGCTAGCCGTATATGTGCTG 57.561 50.000 13.29 8.33 36.57 4.41
26 27 1.071605 GCTAGCCGTATATGTGCTGC 58.928 55.000 2.29 12.43 36.57 5.25
27 28 1.337260 GCTAGCCGTATATGTGCTGCT 60.337 52.381 2.29 2.08 36.57 4.24
28 29 2.600731 CTAGCCGTATATGTGCTGCTC 58.399 52.381 14.60 0.00 36.57 4.26
29 30 0.752658 AGCCGTATATGTGCTGCTCA 59.247 50.000 6.88 6.88 33.23 4.26
30 31 1.345741 AGCCGTATATGTGCTGCTCAT 59.654 47.619 19.53 19.53 33.23 2.90
31 32 2.562738 AGCCGTATATGTGCTGCTCATA 59.437 45.455 22.13 22.13 33.23 2.15
32 33 2.926200 GCCGTATATGTGCTGCTCATAG 59.074 50.000 23.51 14.16 32.43 2.23
33 34 3.367395 GCCGTATATGTGCTGCTCATAGA 60.367 47.826 23.51 18.67 32.43 1.98
34 35 4.809673 CCGTATATGTGCTGCTCATAGAA 58.190 43.478 23.51 14.57 32.43 2.10
35 36 4.861462 CCGTATATGTGCTGCTCATAGAAG 59.139 45.833 23.51 20.92 32.43 2.85
36 37 4.861462 CGTATATGTGCTGCTCATAGAAGG 59.139 45.833 23.51 16.97 32.43 3.46
37 38 4.970860 ATATGTGCTGCTCATAGAAGGT 57.029 40.909 23.51 8.99 32.43 3.50
38 39 3.641434 ATGTGCTGCTCATAGAAGGTT 57.359 42.857 14.90 0.00 0.00 3.50
39 40 2.977914 TGTGCTGCTCATAGAAGGTTC 58.022 47.619 0.00 0.00 0.00 3.62
40 41 1.929836 GTGCTGCTCATAGAAGGTTCG 59.070 52.381 0.00 0.00 0.00 3.95
41 42 1.824852 TGCTGCTCATAGAAGGTTCGA 59.175 47.619 0.00 0.00 0.00 3.71
42 43 2.432146 TGCTGCTCATAGAAGGTTCGAT 59.568 45.455 0.00 0.00 0.00 3.59
43 44 3.118629 TGCTGCTCATAGAAGGTTCGATT 60.119 43.478 0.00 0.00 0.00 3.34
44 45 3.492756 GCTGCTCATAGAAGGTTCGATTC 59.507 47.826 0.00 0.00 0.00 2.52
45 46 4.739137 GCTGCTCATAGAAGGTTCGATTCT 60.739 45.833 5.20 5.20 40.13 2.40
46 47 5.508153 GCTGCTCATAGAAGGTTCGATTCTA 60.508 44.000 8.91 8.91 42.00 2.10
47 48 6.656632 TGCTCATAGAAGGTTCGATTCTAT 57.343 37.500 12.09 12.09 46.17 1.98
54 55 5.112686 AGAAGGTTCGATTCTATGTTCTGC 58.887 41.667 0.00 0.00 35.26 4.26
55 56 4.471904 AGGTTCGATTCTATGTTCTGCA 57.528 40.909 0.00 0.00 0.00 4.41
56 57 4.184629 AGGTTCGATTCTATGTTCTGCAC 58.815 43.478 0.00 0.00 0.00 4.57
57 58 3.000322 GGTTCGATTCTATGTTCTGCACG 60.000 47.826 0.00 0.00 0.00 5.34
58 59 3.503827 TCGATTCTATGTTCTGCACGT 57.496 42.857 0.00 0.00 0.00 4.49
59 60 3.179048 TCGATTCTATGTTCTGCACGTG 58.821 45.455 12.28 12.28 0.00 4.49
60 61 2.285256 CGATTCTATGTTCTGCACGTGC 60.285 50.000 33.11 33.11 42.50 5.34
61 62 2.455674 TTCTATGTTCTGCACGTGCT 57.544 45.000 37.59 21.07 42.66 4.40
62 63 3.586100 TTCTATGTTCTGCACGTGCTA 57.414 42.857 37.59 24.52 42.66 3.49
63 64 3.150848 TCTATGTTCTGCACGTGCTAG 57.849 47.619 37.59 30.39 42.66 3.42
64 65 2.492088 TCTATGTTCTGCACGTGCTAGT 59.508 45.455 37.59 20.58 42.66 2.57
65 66 3.692593 TCTATGTTCTGCACGTGCTAGTA 59.307 43.478 37.59 23.77 42.66 1.82
66 67 3.526931 ATGTTCTGCACGTGCTAGTAT 57.473 42.857 37.59 22.68 42.66 2.12
67 68 2.606108 TGTTCTGCACGTGCTAGTATG 58.394 47.619 37.59 20.76 42.66 2.39
68 69 1.324736 GTTCTGCACGTGCTAGTATGC 59.675 52.381 37.59 18.68 42.66 3.14
69 70 0.817654 TCTGCACGTGCTAGTATGCT 59.182 50.000 37.59 0.00 42.66 3.79
70 71 1.204704 TCTGCACGTGCTAGTATGCTT 59.795 47.619 37.59 0.00 42.66 3.91
71 72 2.425668 TCTGCACGTGCTAGTATGCTTA 59.574 45.455 37.59 15.20 42.66 3.09
72 73 2.791560 CTGCACGTGCTAGTATGCTTAG 59.208 50.000 37.59 20.41 42.66 2.18
73 74 2.128035 GCACGTGCTAGTATGCTTAGG 58.872 52.381 32.55 0.00 38.21 2.69
74 75 2.481449 GCACGTGCTAGTATGCTTAGGT 60.481 50.000 32.55 0.00 38.21 3.08
75 76 3.243301 GCACGTGCTAGTATGCTTAGGTA 60.243 47.826 32.55 0.00 38.21 3.08
76 77 4.558898 GCACGTGCTAGTATGCTTAGGTAT 60.559 45.833 32.55 0.00 38.21 2.73
77 78 5.154932 CACGTGCTAGTATGCTTAGGTATC 58.845 45.833 0.82 0.00 0.00 2.24
78 79 4.083431 ACGTGCTAGTATGCTTAGGTATCG 60.083 45.833 0.00 0.00 0.00 2.92
79 80 4.083431 CGTGCTAGTATGCTTAGGTATCGT 60.083 45.833 0.00 0.00 0.00 3.73
80 81 5.562307 CGTGCTAGTATGCTTAGGTATCGTT 60.562 44.000 0.00 0.00 0.00 3.85
81 82 6.347969 CGTGCTAGTATGCTTAGGTATCGTTA 60.348 42.308 0.00 0.00 0.00 3.18
82 83 7.536855 GTGCTAGTATGCTTAGGTATCGTTAT 58.463 38.462 0.00 0.00 0.00 1.89
83 84 7.485277 GTGCTAGTATGCTTAGGTATCGTTATG 59.515 40.741 0.00 0.00 0.00 1.90
84 85 7.392393 TGCTAGTATGCTTAGGTATCGTTATGA 59.608 37.037 0.00 0.00 0.00 2.15
85 86 7.911205 GCTAGTATGCTTAGGTATCGTTATGAG 59.089 40.741 0.00 0.00 0.00 2.90
86 87 7.997773 AGTATGCTTAGGTATCGTTATGAGA 57.002 36.000 0.00 0.00 0.00 3.27
87 88 8.582657 AGTATGCTTAGGTATCGTTATGAGAT 57.417 34.615 0.00 0.00 0.00 2.75
88 89 8.462811 AGTATGCTTAGGTATCGTTATGAGATG 58.537 37.037 0.00 0.00 0.00 2.90
89 90 5.470368 TGCTTAGGTATCGTTATGAGATGC 58.530 41.667 0.00 0.00 0.00 3.91
90 91 5.010617 TGCTTAGGTATCGTTATGAGATGCA 59.989 40.000 0.00 0.00 33.32 3.96
91 92 6.102663 GCTTAGGTATCGTTATGAGATGCAT 58.897 40.000 0.00 0.00 41.08 3.96
92 93 7.093945 TGCTTAGGTATCGTTATGAGATGCATA 60.094 37.037 0.00 0.00 38.44 3.14
93 94 7.221067 GCTTAGGTATCGTTATGAGATGCATAC 59.779 40.741 0.00 0.00 39.14 2.39
94 95 5.967088 AGGTATCGTTATGAGATGCATACC 58.033 41.667 0.00 0.00 39.14 2.73
95 96 5.717178 AGGTATCGTTATGAGATGCATACCT 59.283 40.000 0.00 0.81 39.76 3.08
96 97 6.211584 AGGTATCGTTATGAGATGCATACCTT 59.788 38.462 0.00 0.00 41.11 3.50
97 98 6.874134 GGTATCGTTATGAGATGCATACCTTT 59.126 38.462 0.00 0.00 39.14 3.11
98 99 7.387948 GGTATCGTTATGAGATGCATACCTTTT 59.612 37.037 0.00 0.00 39.14 2.27
99 100 9.419297 GTATCGTTATGAGATGCATACCTTTTA 57.581 33.333 0.00 0.00 39.14 1.52
101 102 8.310406 TCGTTATGAGATGCATACCTTTTATG 57.690 34.615 0.00 0.00 39.14 1.90
109 110 4.326504 GCATACCTTTTATGCCATGCTT 57.673 40.909 5.14 0.00 43.18 3.91
110 111 5.452078 GCATACCTTTTATGCCATGCTTA 57.548 39.130 5.14 0.00 43.18 3.09
111 112 5.222631 GCATACCTTTTATGCCATGCTTAC 58.777 41.667 5.14 0.00 43.18 2.34
112 113 5.010012 GCATACCTTTTATGCCATGCTTACT 59.990 40.000 5.14 0.00 43.18 2.24
113 114 4.989279 ACCTTTTATGCCATGCTTACTG 57.011 40.909 0.00 0.00 0.00 2.74
114 115 4.344104 ACCTTTTATGCCATGCTTACTGT 58.656 39.130 0.00 0.00 0.00 3.55
115 116 4.772100 ACCTTTTATGCCATGCTTACTGTT 59.228 37.500 0.00 0.00 0.00 3.16
116 117 5.949354 ACCTTTTATGCCATGCTTACTGTTA 59.051 36.000 0.00 0.00 0.00 2.41
117 118 6.435904 ACCTTTTATGCCATGCTTACTGTTAA 59.564 34.615 0.00 0.00 0.00 2.01
118 119 6.751888 CCTTTTATGCCATGCTTACTGTTAAC 59.248 38.462 0.00 0.00 0.00 2.01
119 120 7.362920 CCTTTTATGCCATGCTTACTGTTAACT 60.363 37.037 7.22 0.00 0.00 2.24
120 121 6.677781 TTATGCCATGCTTACTGTTAACTC 57.322 37.500 7.22 0.00 0.00 3.01
121 122 3.000041 TGCCATGCTTACTGTTAACTCG 59.000 45.455 7.22 0.67 0.00 4.18
122 123 3.000727 GCCATGCTTACTGTTAACTCGT 58.999 45.455 7.22 6.74 0.00 4.18
123 124 3.181520 GCCATGCTTACTGTTAACTCGTG 60.182 47.826 7.22 1.65 0.00 4.35
124 125 3.370978 CCATGCTTACTGTTAACTCGTGG 59.629 47.826 7.22 6.35 0.00 4.94
125 126 4.242475 CATGCTTACTGTTAACTCGTGGA 58.758 43.478 7.22 0.00 0.00 4.02
126 127 4.530710 TGCTTACTGTTAACTCGTGGAT 57.469 40.909 7.22 0.00 0.00 3.41
127 128 5.648178 TGCTTACTGTTAACTCGTGGATA 57.352 39.130 7.22 0.00 0.00 2.59
128 129 6.028146 TGCTTACTGTTAACTCGTGGATAA 57.972 37.500 7.22 0.00 0.00 1.75
129 130 6.097356 TGCTTACTGTTAACTCGTGGATAAG 58.903 40.000 7.22 6.00 0.00 1.73
130 131 6.098017 GCTTACTGTTAACTCGTGGATAAGT 58.902 40.000 7.22 1.22 0.00 2.24
131 132 6.253083 GCTTACTGTTAACTCGTGGATAAGTC 59.747 42.308 7.22 0.00 0.00 3.01
132 133 5.979288 ACTGTTAACTCGTGGATAAGTCT 57.021 39.130 7.22 0.00 0.00 3.24
133 134 8.565896 TTACTGTTAACTCGTGGATAAGTCTA 57.434 34.615 7.22 0.00 0.00 2.59
134 135 7.458409 ACTGTTAACTCGTGGATAAGTCTAA 57.542 36.000 7.22 0.00 0.00 2.10
135 136 8.064336 ACTGTTAACTCGTGGATAAGTCTAAT 57.936 34.615 7.22 0.00 0.00 1.73
136 137 8.189460 ACTGTTAACTCGTGGATAAGTCTAATC 58.811 37.037 7.22 0.00 0.00 1.75
137 138 7.191551 TGTTAACTCGTGGATAAGTCTAATCG 58.808 38.462 7.22 0.00 0.00 3.34
138 139 7.066163 TGTTAACTCGTGGATAAGTCTAATCGA 59.934 37.037 7.22 0.00 0.00 3.59
139 140 6.446781 AACTCGTGGATAAGTCTAATCGAA 57.553 37.500 0.00 0.00 0.00 3.71
140 141 6.446781 ACTCGTGGATAAGTCTAATCGAAA 57.553 37.500 0.00 0.00 0.00 3.46
141 142 6.860080 ACTCGTGGATAAGTCTAATCGAAAA 58.140 36.000 0.00 0.00 0.00 2.29
142 143 7.318141 ACTCGTGGATAAGTCTAATCGAAAAA 58.682 34.615 0.00 0.00 0.00 1.94
143 144 7.488471 ACTCGTGGATAAGTCTAATCGAAAAAG 59.512 37.037 0.00 0.00 0.00 2.27
144 145 7.318141 TCGTGGATAAGTCTAATCGAAAAAGT 58.682 34.615 0.00 0.00 0.00 2.66
145 146 7.274904 TCGTGGATAAGTCTAATCGAAAAAGTG 59.725 37.037 0.00 0.00 0.00 3.16
146 147 7.180748 GTGGATAAGTCTAATCGAAAAAGTGC 58.819 38.462 0.00 0.00 0.00 4.40
147 148 7.064728 GTGGATAAGTCTAATCGAAAAAGTGCT 59.935 37.037 0.00 0.00 0.00 4.40
148 149 8.255206 TGGATAAGTCTAATCGAAAAAGTGCTA 58.745 33.333 0.00 0.00 0.00 3.49
149 150 9.095065 GGATAAGTCTAATCGAAAAAGTGCTAA 57.905 33.333 0.00 0.00 0.00 3.09
159 160 8.911247 ATCGAAAAAGTGCTAATATTTCCAAC 57.089 30.769 0.00 0.00 0.00 3.77
160 161 7.877003 TCGAAAAAGTGCTAATATTTCCAACA 58.123 30.769 0.00 0.00 0.00 3.33
228 229 1.465856 GCGAGGAGCCGAACAATTTTC 60.466 52.381 0.00 0.00 40.81 2.29
236 237 3.065371 AGCCGAACAATTTTCCATCGATC 59.935 43.478 0.00 0.00 35.65 3.69
284 286 2.545952 GGGAATAGAGCGAGATTTGCGA 60.546 50.000 0.00 0.00 37.44 5.10
287 289 4.143221 GGAATAGAGCGAGATTTGCGAATC 60.143 45.833 17.64 17.64 41.63 2.52
291 293 0.316524 GCGAGATTTGCGAATCCAGC 60.317 55.000 20.95 21.00 42.16 4.85
355 357 6.071447 GCTAGAGATGAGTGATCCATGTATGT 60.071 42.308 0.00 0.00 0.00 2.29
356 358 6.744175 AGAGATGAGTGATCCATGTATGTT 57.256 37.500 0.00 0.00 0.00 2.71
357 359 7.846101 AGAGATGAGTGATCCATGTATGTTA 57.154 36.000 0.00 0.00 0.00 2.41
358 360 7.894708 AGAGATGAGTGATCCATGTATGTTAG 58.105 38.462 0.00 0.00 0.00 2.34
362 364 7.423844 TGAGTGATCCATGTATGTTAGTCTT 57.576 36.000 0.00 0.00 0.00 3.01
372 374 7.010183 CCATGTATGTTAGTCTTTTAGGTGTCG 59.990 40.741 0.00 0.00 0.00 4.35
378 380 6.040166 TGTTAGTCTTTTAGGTGTCGACTCTT 59.960 38.462 17.92 12.30 36.46 2.85
398 400 6.599638 ACTCTTCCACCTATGTAGAATTTTGC 59.400 38.462 0.00 0.00 0.00 3.68
400 402 4.839121 TCCACCTATGTAGAATTTTGCGT 58.161 39.130 0.00 0.00 0.00 5.24
402 404 5.813672 TCCACCTATGTAGAATTTTGCGTAC 59.186 40.000 0.00 0.00 0.00 3.67
426 428 1.197721 CACACTTTTGATGAGCGACCC 59.802 52.381 0.00 0.00 0.00 4.46
427 429 0.804989 CACTTTTGATGAGCGACCCC 59.195 55.000 0.00 0.00 0.00 4.95
450 452 4.846551 ATGGCGCACGCTATTACA 57.153 50.000 15.36 4.18 39.27 2.41
473 475 2.751436 GCGAGCATTTGGAGGCCA 60.751 61.111 5.01 0.00 31.67 5.36
484 490 1.000396 GGAGGCCATGTTGCTCCTT 60.000 57.895 5.01 0.00 0.00 3.36
485 491 1.034292 GGAGGCCATGTTGCTCCTTC 61.034 60.000 5.01 0.00 0.00 3.46
486 492 0.322816 GAGGCCATGTTGCTCCTTCA 60.323 55.000 5.01 0.00 0.00 3.02
487 493 0.333993 AGGCCATGTTGCTCCTTCAT 59.666 50.000 5.01 0.00 0.00 2.57
489 495 0.179119 GCCATGTTGCTCCTTCATGC 60.179 55.000 0.00 0.00 37.99 4.06
497 503 1.340697 TGCTCCTTCATGCTTGCAGAT 60.341 47.619 0.76 0.00 0.00 2.90
506 512 5.252969 TCATGCTTGCAGATTAATGTTCC 57.747 39.130 0.87 0.00 0.00 3.62
513 519 7.093814 TGCTTGCAGATTAATGTTCCAAAGTAT 60.094 33.333 0.00 0.00 0.00 2.12
533 539 7.919313 AGTATAAATTGATGAAATGCTTGCG 57.081 32.000 0.00 0.00 0.00 4.85
537 543 1.227060 GATGAAATGCTTGCGGGGC 60.227 57.895 0.00 0.00 0.00 5.80
539 545 3.747976 GAAATGCTTGCGGGGCGT 61.748 61.111 0.00 0.00 0.00 5.68
556 562 0.725117 CGTGCGAACCATTTAGGACC 59.275 55.000 0.00 0.00 41.22 4.46
571 578 8.458843 CCATTTAGGACCAGTACAATGTAAAAG 58.541 37.037 0.00 0.00 41.22 2.27
587 594 9.612620 CAATGTAAAAGTTCAACTCTACCAATC 57.387 33.333 0.00 0.00 0.00 2.67
589 596 8.603242 TGTAAAAGTTCAACTCTACCAATCTC 57.397 34.615 0.00 0.00 0.00 2.75
600 607 5.163364 ACTCTACCAATCTCGATTGCAATCT 60.163 40.000 31.12 14.32 45.06 2.40
606 613 0.933097 CTCGATTGCAATCTCCGTGG 59.067 55.000 31.12 17.76 33.24 4.94
610 617 1.062587 GATTGCAATCTCCGTGGTTCG 59.937 52.381 28.38 0.00 34.51 3.95
655 677 1.315690 ATTGATGCAGCTTGATCCCG 58.684 50.000 2.53 0.00 0.00 5.14
656 678 0.035152 TTGATGCAGCTTGATCCCGT 60.035 50.000 2.53 0.00 0.00 5.28
666 688 2.561569 CTTGATCCCGTCATTGGTACC 58.438 52.381 4.43 4.43 36.54 3.34
672 694 1.366111 CCGTCATTGGTACCTTGGCG 61.366 60.000 25.80 25.80 38.16 5.69
682 704 2.147958 GTACCTTGGCGTGTGAAATCA 58.852 47.619 0.00 0.00 0.00 2.57
699 747 0.108186 TCATCTGTGCCATCGGTGAC 60.108 55.000 0.00 0.00 0.00 3.67
732 781 3.951680 GGAGTCACAAACAAAGGAAAGGA 59.048 43.478 0.00 0.00 0.00 3.36
746 795 2.414691 GGAAAGGAGCAATGAAAGCGAC 60.415 50.000 0.00 0.00 37.01 5.19
798 1132 7.490079 ACGAAAAGTTTGAAGGGTAATGAAAAC 59.510 33.333 0.00 0.00 0.00 2.43
812 1146 3.143807 TGAAAACGAGGTGCAGTTTTG 57.856 42.857 16.51 0.00 46.58 2.44
813 1147 2.490115 TGAAAACGAGGTGCAGTTTTGT 59.510 40.909 16.51 0.04 46.58 2.83
839 1173 2.201732 TGAGACAAATTCGCGCCTATC 58.798 47.619 0.00 0.00 0.00 2.08
873 1207 0.966179 GGCCCAAATTTGAAGACGGT 59.034 50.000 19.86 0.00 0.00 4.83
1206 1541 1.000612 GGAGGTCTTCGTCTCCCCT 59.999 63.158 0.00 0.00 42.72 4.79
1265 1604 4.337060 GGTTTGTGCCCCGCGTTC 62.337 66.667 4.92 0.00 0.00 3.95
1267 1606 4.572571 TTTGTGCCCCGCGTTCCT 62.573 61.111 4.92 0.00 0.00 3.36
1280 1619 2.412089 CGCGTTCCTCCTTTTTCTAGTG 59.588 50.000 0.00 0.00 0.00 2.74
1325 1664 2.668185 TTTGTGCCGACGGTGATGGT 62.668 55.000 16.73 0.00 0.00 3.55
1326 1665 2.358247 GTGCCGACGGTGATGGTT 60.358 61.111 16.73 0.00 0.00 3.67
1338 1677 2.681848 GGTGATGGTTGAATCTCTGCTG 59.318 50.000 0.00 0.00 0.00 4.41
1537 1877 2.434336 CCTCGTCCAGGTAATCCATTCA 59.566 50.000 0.00 0.00 37.53 2.57
1554 1894 5.779260 TCCATTCACATTCTTTCCCAATCAA 59.221 36.000 0.00 0.00 0.00 2.57
1556 1896 4.764679 TCACATTCTTTCCCAATCAACG 57.235 40.909 0.00 0.00 0.00 4.10
1564 1904 6.007936 TCTTTCCCAATCAACGTTAACATG 57.992 37.500 0.00 4.31 0.00 3.21
1571 1911 5.220006 CCAATCAACGTTAACATGATTTGCG 60.220 40.000 23.74 16.58 40.75 4.85
1592 1932 2.480759 GCCATGTCAGCAATGTGGATTC 60.481 50.000 0.00 0.00 31.59 2.52
1757 2099 3.831911 TGGGAAGACCTTTTATGGCTTTG 59.168 43.478 0.00 0.00 41.11 2.77
1879 2222 4.256110 CTGACTGTGAGATGGTTATTGCA 58.744 43.478 0.00 0.00 0.00 4.08
1946 2290 5.627499 TGGTTAACAAGATGTCAGATTGC 57.373 39.130 8.10 0.00 0.00 3.56
1953 2301 4.699257 ACAAGATGTCAGATTGCCTTCTTC 59.301 41.667 0.82 0.00 0.00 2.87
1974 2322 6.605995 TCTTCGTCATCCTCTATTAACCAAGA 59.394 38.462 0.00 0.00 0.00 3.02
2001 2349 6.705825 AGAACCAATTTCTTACAAAACATGCC 59.294 34.615 0.00 0.00 42.37 4.40
2049 2398 4.512207 CCCCATAGGAACCTAGCATACCTA 60.512 50.000 6.72 0.00 38.24 3.08
2050 2399 5.281314 CCCATAGGAACCTAGCATACCTAT 58.719 45.833 6.72 0.00 42.39 2.57
2134 2485 1.877443 ACGCGACCATGCTAAAAACTT 59.123 42.857 15.93 0.00 0.00 2.66
2211 2572 7.993183 TGTTCTTATTCTGAACCTTTCACTCTT 59.007 33.333 0.00 0.00 42.04 2.85
2212 2573 8.841300 GTTCTTATTCTGAACCTTTCACTCTTT 58.159 33.333 0.00 0.00 38.19 2.52
2213 2574 8.608844 TCTTATTCTGAACCTTTCACTCTTTC 57.391 34.615 0.00 0.00 35.46 2.62
2229 2590 0.470766 TTTCCGGCACAACCTGTACT 59.529 50.000 0.00 0.00 35.61 2.73
2311 2672 5.248870 TGAACAAGAAAGGAAACAAGAGC 57.751 39.130 0.00 0.00 0.00 4.09
2330 2691 2.158900 AGCGGACTGTTCCTCCATAATG 60.159 50.000 0.00 0.00 40.23 1.90
2426 2787 9.988815 GATGACCATATACTTCTTTGTCTACAT 57.011 33.333 0.00 0.00 0.00 2.29
2444 2805 7.764443 TGTCTACATTAGCACTAAGGAAATGTC 59.236 37.037 8.90 0.00 40.32 3.06
2471 2832 5.215845 TCTTCCTGTGGATGGTCATATACA 58.784 41.667 0.00 0.00 0.00 2.29
2483 2844 9.950496 GGATGGTCATATACATCTTTTGTCTAT 57.050 33.333 11.64 0.00 42.34 1.98
2497 2858 2.985896 TGTCTATGTTAGCACCCAAGC 58.014 47.619 0.00 0.00 0.00 4.01
2531 2893 2.106338 TCCATCCTCTTTCAGTTGTGCA 59.894 45.455 0.00 0.00 0.00 4.57
2911 3274 8.462143 TTTGTATCTTAAAGTAAGAGCACTCG 57.538 34.615 4.23 0.00 46.90 4.18
3017 3382 8.396390 GTTTGCTTATAGAACTTAAAGGGCTAC 58.604 37.037 0.00 0.00 0.00 3.58
3038 3403 7.255569 GCTACCTGTTTTACCAACCATATTTC 58.744 38.462 0.00 0.00 0.00 2.17
3055 3420 7.636326 CCATATTTCGTGGTATGGTTTCTTAC 58.364 38.462 11.82 0.00 41.47 2.34
3089 3459 5.573337 AATCTGCATCTTTGTTAGCCTTC 57.427 39.130 0.00 0.00 0.00 3.46
3183 3554 3.995199 ACTATGTGTGGACAGTGTGAAG 58.005 45.455 0.00 0.00 34.87 3.02
3201 3572 3.321682 TGAAGCAAAGATGGAGGTTTTGG 59.678 43.478 0.00 0.00 33.54 3.28
3202 3573 2.250924 AGCAAAGATGGAGGTTTTGGG 58.749 47.619 0.00 0.00 33.54 4.12
3261 3632 6.708285 TCAGTTTAGAATTCCTAACCAGACC 58.292 40.000 13.69 0.00 37.10 3.85
3268 3639 5.661759 AGAATTCCTAACCAGACCGACTATT 59.338 40.000 0.65 0.00 0.00 1.73
3277 3648 4.580995 ACCAGACCGACTATTCTAGATGTG 59.419 45.833 0.00 0.00 0.00 3.21
3332 3704 2.945080 AATCGATGGATGCATCAGGT 57.055 45.000 27.25 12.68 31.83 4.00
3339 3711 2.204463 TGGATGCATCAGGTTCCCTTA 58.796 47.619 27.25 0.00 0.00 2.69
3751 4371 2.938838 TGGGGTGTGTTAGTGGAAAAG 58.061 47.619 0.00 0.00 0.00 2.27
3843 4472 7.682787 ATCCAAACTCTTCTGTACCATAGAT 57.317 36.000 0.00 0.00 0.00 1.98
3844 4473 7.496346 TCCAAACTCTTCTGTACCATAGATT 57.504 36.000 0.00 0.00 0.00 2.40
3845 4474 7.918076 TCCAAACTCTTCTGTACCATAGATTT 58.082 34.615 0.00 0.00 0.00 2.17
3846 4475 9.042450 TCCAAACTCTTCTGTACCATAGATTTA 57.958 33.333 0.00 0.00 0.00 1.40
3847 4476 9.838339 CCAAACTCTTCTGTACCATAGATTTAT 57.162 33.333 0.00 0.00 0.00 1.40
4034 4665 0.618393 CCCCACCAAGGCAAATGGAT 60.618 55.000 10.45 0.00 40.56 3.41
4217 4852 5.048434 GCCTATTCAACTTTGAGCTCTGTTT 60.048 40.000 16.19 5.71 38.61 2.83
4222 4857 4.096382 TCAACTTTGAGCTCTGTTTGGTTC 59.904 41.667 16.19 0.00 32.50 3.62
4236 4871 0.464735 TGGTTCTCCCGGTTGTGTTG 60.465 55.000 0.00 0.00 35.15 3.33
4280 4915 9.098355 GAGAATTCTGTACTTATGTAACATGCA 57.902 33.333 14.00 0.00 0.00 3.96
4303 4938 2.193536 GTTGCTCCTGGTGCGGTTT 61.194 57.895 15.25 0.00 0.00 3.27
4307 4942 1.373435 CTCCTGGTGCGGTTTGGTA 59.627 57.895 0.00 0.00 0.00 3.25
4313 4948 1.577421 GTGCGGTTTGGTATGCGTT 59.423 52.632 0.00 0.00 0.00 4.84
4320 4965 3.119990 CGGTTTGGTATGCGTTGAAGATT 60.120 43.478 0.00 0.00 0.00 2.40
4333 4978 4.168760 GTTGAAGATTCCTTTTGGCATCG 58.831 43.478 0.00 0.00 45.12 3.84
4361 5006 3.938334 GGTTGTTGGATTGTGCAAACTTT 59.062 39.130 0.00 0.00 26.96 2.66
4368 5013 2.292103 TTGTGCAAACTTTGAGTGCC 57.708 45.000 5.65 0.00 37.48 5.01
4382 5027 8.995027 ACTTTGAGTGCCCATTGATATTTATA 57.005 30.769 0.00 0.00 0.00 0.98
4383 5028 9.592196 ACTTTGAGTGCCCATTGATATTTATAT 57.408 29.630 0.00 0.00 0.00 0.86
4406 5051 3.694734 CATGTTTGTTTTGCAGTCTCGT 58.305 40.909 0.00 0.00 0.00 4.18
4407 5052 3.129852 TGTTTGTTTTGCAGTCTCGTG 57.870 42.857 0.00 0.00 0.00 4.35
4413 5058 0.944386 TTTGCAGTCTCGTGCCTTTC 59.056 50.000 0.00 0.00 43.28 2.62
4449 5094 1.133482 AGCAGCACCTTTTACCACCTT 60.133 47.619 0.00 0.00 0.00 3.50
4452 5097 3.319689 GCAGCACCTTTTACCACCTTTTA 59.680 43.478 0.00 0.00 0.00 1.52
4477 5122 4.462483 TGTTTATGATCAACAAAGGCCTCC 59.538 41.667 5.23 0.00 31.05 4.30
4493 5138 0.324285 CTCCTGCTGCCTTCTTGACT 59.676 55.000 0.00 0.00 0.00 3.41
4500 5145 2.354259 CTGCCTTCTTGACTGTCCATC 58.646 52.381 5.17 0.00 0.00 3.51
4511 5156 3.324846 TGACTGTCCATCACTAGTTTGCT 59.675 43.478 5.17 0.00 0.00 3.91
4512 5157 3.668447 ACTGTCCATCACTAGTTTGCTG 58.332 45.455 0.00 0.00 0.00 4.41
4513 5158 3.324846 ACTGTCCATCACTAGTTTGCTGA 59.675 43.478 0.00 0.00 0.00 4.26
4516 5161 3.873952 GTCCATCACTAGTTTGCTGATCC 59.126 47.826 0.00 0.00 0.00 3.36
4517 5162 3.519107 TCCATCACTAGTTTGCTGATCCA 59.481 43.478 0.00 0.00 0.00 3.41
4519 5164 4.514441 CCATCACTAGTTTGCTGATCCATC 59.486 45.833 0.00 0.00 0.00 3.51
4520 5165 5.366460 CATCACTAGTTTGCTGATCCATCT 58.634 41.667 0.00 0.00 0.00 2.90
4522 5167 3.875727 CACTAGTTTGCTGATCCATCTGG 59.124 47.826 0.00 0.00 0.00 3.86
4523 5168 3.521126 ACTAGTTTGCTGATCCATCTGGT 59.479 43.478 0.00 0.00 36.34 4.00
4524 5169 2.996631 AGTTTGCTGATCCATCTGGTC 58.003 47.619 0.00 0.00 36.34 4.02
4526 5171 3.053842 AGTTTGCTGATCCATCTGGTCAT 60.054 43.478 0.00 0.00 36.34 3.06
4527 5172 2.632987 TGCTGATCCATCTGGTCATG 57.367 50.000 0.00 0.00 36.34 3.07
4529 5174 1.476291 GCTGATCCATCTGGTCATGCA 60.476 52.381 0.00 0.00 36.34 3.96
4530 5175 2.219458 CTGATCCATCTGGTCATGCAC 58.781 52.381 0.00 0.00 36.34 4.57
4531 5176 1.224075 GATCCATCTGGTCATGCACG 58.776 55.000 0.00 0.00 36.34 5.34
4533 5178 2.475466 CCATCTGGTCATGCACGGC 61.475 63.158 0.00 0.00 0.00 5.68
4534 5179 1.450848 CATCTGGTCATGCACGGCT 60.451 57.895 0.00 0.00 0.00 5.52
4535 5180 1.028330 CATCTGGTCATGCACGGCTT 61.028 55.000 0.00 0.00 0.00 4.35
4536 5181 0.745845 ATCTGGTCATGCACGGCTTC 60.746 55.000 0.00 0.00 0.00 3.86
4540 5214 1.718757 GGTCATGCACGGCTTCCATC 61.719 60.000 0.00 0.00 0.00 3.51
4544 5218 1.913951 ATGCACGGCTTCCATCAGGA 61.914 55.000 0.00 0.00 43.93 3.86
4546 5220 1.442526 GCACGGCTTCCATCAGGATG 61.443 60.000 2.24 2.24 45.26 3.51
4607 5281 2.780065 TTGCACTTGTGCTAGCAAAG 57.220 45.000 21.29 23.93 43.24 2.77
4634 5308 5.701224 ACAAACAAAAGAGATCCCCAAGTA 58.299 37.500 0.00 0.00 0.00 2.24
4736 5412 2.990740 ACCCAAGGTGATTAAAGGCA 57.009 45.000 0.00 0.00 32.98 4.75
4753 5429 3.431415 AGGCACCTTTTGGATCCTTTAC 58.569 45.455 14.23 0.00 44.07 2.01
4782 5458 7.174772 TGCAAAGCAGAATAGTGTGATTAAAGA 59.825 33.333 0.00 0.00 33.32 2.52
4872 5593 2.882927 TTCGCAACGACATAGGCTAT 57.117 45.000 0.00 0.00 34.89 2.97
4985 5706 7.331791 CCACTATTATAGCATTTACCCTCTCC 58.668 42.308 0.00 0.00 0.00 3.71
4992 5713 4.336280 AGCATTTACCCTCTCCTGAAAAC 58.664 43.478 0.00 0.00 0.00 2.43
5026 5747 9.662947 ATTTCTAGTAGCGGTTAACAAGTAAAT 57.337 29.630 8.10 0.00 0.00 1.40
5050 5771 4.016444 TGAATATGGTGCAAAAGGAGGTC 58.984 43.478 0.00 0.00 0.00 3.85
5088 5809 8.980610 CATAAGAAGAGTCTCATGAACATGATC 58.019 37.037 16.19 11.76 45.74 2.92
5177 5900 5.570205 TTTGTGGTAGTGGATAACAGGAA 57.430 39.130 0.00 0.00 29.47 3.36
5185 5908 7.110155 GGTAGTGGATAACAGGAAATTTGAGA 58.890 38.462 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.417894 AGCACATATACGGCTAGCATAAGTA 59.582 40.000 18.24 14.37 35.82 2.24
1 2 4.220821 AGCACATATACGGCTAGCATAAGT 59.779 41.667 18.24 12.66 35.82 2.24
2 3 4.564372 CAGCACATATACGGCTAGCATAAG 59.436 45.833 18.24 5.71 35.82 1.73
3 4 4.494484 CAGCACATATACGGCTAGCATAA 58.506 43.478 18.24 0.29 35.82 1.90
4 5 3.676049 GCAGCACATATACGGCTAGCATA 60.676 47.826 18.24 8.76 35.82 3.14
5 6 2.932622 GCAGCACATATACGGCTAGCAT 60.933 50.000 18.24 6.50 35.82 3.79
6 7 1.605457 GCAGCACATATACGGCTAGCA 60.605 52.381 18.24 0.00 35.82 3.49
7 8 1.071605 GCAGCACATATACGGCTAGC 58.928 55.000 6.04 6.04 35.82 3.42
8 9 2.029918 TGAGCAGCACATATACGGCTAG 60.030 50.000 0.00 0.00 37.45 3.42
9 10 1.960689 TGAGCAGCACATATACGGCTA 59.039 47.619 0.00 0.00 37.45 3.93
10 11 0.752658 TGAGCAGCACATATACGGCT 59.247 50.000 0.00 0.00 40.11 5.52
11 12 1.800805 ATGAGCAGCACATATACGGC 58.199 50.000 3.11 0.00 0.00 5.68
12 13 4.440839 TCTATGAGCAGCACATATACGG 57.559 45.455 12.36 2.47 31.26 4.02
13 14 4.861462 CCTTCTATGAGCAGCACATATACG 59.139 45.833 12.36 4.36 31.26 3.06
14 15 5.788450 ACCTTCTATGAGCAGCACATATAC 58.212 41.667 12.36 0.00 31.26 1.47
15 16 6.425210 AACCTTCTATGAGCAGCACATATA 57.575 37.500 12.36 3.73 31.26 0.86
16 17 4.970860 ACCTTCTATGAGCAGCACATAT 57.029 40.909 12.36 0.00 31.26 1.78
17 18 4.697514 GAACCTTCTATGAGCAGCACATA 58.302 43.478 11.54 11.54 0.00 2.29
18 19 3.539604 GAACCTTCTATGAGCAGCACAT 58.460 45.455 10.41 10.41 0.00 3.21
19 20 2.675032 CGAACCTTCTATGAGCAGCACA 60.675 50.000 0.00 0.00 0.00 4.57
20 21 1.929836 CGAACCTTCTATGAGCAGCAC 59.070 52.381 0.00 0.00 0.00 4.40
21 22 1.824852 TCGAACCTTCTATGAGCAGCA 59.175 47.619 0.00 0.00 0.00 4.41
22 23 2.586258 TCGAACCTTCTATGAGCAGC 57.414 50.000 0.00 0.00 0.00 5.25
23 24 4.942852 AGAATCGAACCTTCTATGAGCAG 58.057 43.478 0.00 0.00 31.27 4.24
24 25 6.656632 ATAGAATCGAACCTTCTATGAGCA 57.343 37.500 15.63 0.00 41.89 4.26
29 30 6.926272 GCAGAACATAGAATCGAACCTTCTAT 59.074 38.462 12.09 12.09 43.43 1.98
30 31 6.127451 TGCAGAACATAGAATCGAACCTTCTA 60.127 38.462 8.91 8.91 39.02 2.10
31 32 5.112686 GCAGAACATAGAATCGAACCTTCT 58.887 41.667 5.20 5.20 36.87 2.85
32 33 4.870426 TGCAGAACATAGAATCGAACCTTC 59.130 41.667 0.00 0.00 0.00 3.46
33 34 4.631813 GTGCAGAACATAGAATCGAACCTT 59.368 41.667 0.00 0.00 0.00 3.50
34 35 4.184629 GTGCAGAACATAGAATCGAACCT 58.815 43.478 0.00 0.00 0.00 3.50
35 36 3.000322 CGTGCAGAACATAGAATCGAACC 60.000 47.826 0.00 0.00 0.00 3.62
36 37 3.612860 ACGTGCAGAACATAGAATCGAAC 59.387 43.478 0.00 0.00 0.00 3.95
37 38 3.612423 CACGTGCAGAACATAGAATCGAA 59.388 43.478 0.82 0.00 0.00 3.71
38 39 3.179048 CACGTGCAGAACATAGAATCGA 58.821 45.455 0.82 0.00 0.00 3.59
39 40 2.285256 GCACGTGCAGAACATAGAATCG 60.285 50.000 34.52 0.00 41.59 3.34
40 41 2.932614 AGCACGTGCAGAACATAGAATC 59.067 45.455 39.21 7.60 45.16 2.52
41 42 2.977914 AGCACGTGCAGAACATAGAAT 58.022 42.857 39.21 13.86 45.16 2.40
42 43 2.455674 AGCACGTGCAGAACATAGAA 57.544 45.000 39.21 0.00 45.16 2.10
43 44 2.492088 ACTAGCACGTGCAGAACATAGA 59.508 45.455 39.21 13.25 45.16 1.98
44 45 2.881074 ACTAGCACGTGCAGAACATAG 58.119 47.619 39.21 30.13 45.16 2.23
45 46 4.359706 CATACTAGCACGTGCAGAACATA 58.640 43.478 39.21 21.71 45.16 2.29
46 47 3.190079 CATACTAGCACGTGCAGAACAT 58.810 45.455 39.21 21.76 45.16 2.71
47 48 2.606108 CATACTAGCACGTGCAGAACA 58.394 47.619 39.21 21.44 45.16 3.18
48 49 1.324736 GCATACTAGCACGTGCAGAAC 59.675 52.381 39.21 19.07 45.16 3.01
49 50 1.204704 AGCATACTAGCACGTGCAGAA 59.795 47.619 39.21 23.75 45.16 3.02
50 51 0.817654 AGCATACTAGCACGTGCAGA 59.182 50.000 39.21 26.12 45.16 4.26
51 52 1.645034 AAGCATACTAGCACGTGCAG 58.355 50.000 39.21 32.35 45.16 4.41
52 53 2.481276 CCTAAGCATACTAGCACGTGCA 60.481 50.000 39.21 24.46 45.16 4.57
53 54 2.128035 CCTAAGCATACTAGCACGTGC 58.872 52.381 32.79 32.79 42.49 5.34
54 55 3.438297 ACCTAAGCATACTAGCACGTG 57.562 47.619 12.28 12.28 36.85 4.49
55 56 4.083431 CGATACCTAAGCATACTAGCACGT 60.083 45.833 0.00 0.00 36.85 4.49
56 57 4.083431 ACGATACCTAAGCATACTAGCACG 60.083 45.833 0.00 0.00 36.85 5.34
57 58 5.373981 ACGATACCTAAGCATACTAGCAC 57.626 43.478 0.00 0.00 36.85 4.40
58 59 7.392393 TCATAACGATACCTAAGCATACTAGCA 59.608 37.037 0.00 0.00 36.85 3.49
59 60 7.759465 TCATAACGATACCTAAGCATACTAGC 58.241 38.462 0.00 0.00 0.00 3.42
60 61 9.163899 TCTCATAACGATACCTAAGCATACTAG 57.836 37.037 0.00 0.00 0.00 2.57
61 62 9.682465 ATCTCATAACGATACCTAAGCATACTA 57.318 33.333 0.00 0.00 0.00 1.82
62 63 7.997773 TCTCATAACGATACCTAAGCATACT 57.002 36.000 0.00 0.00 0.00 2.12
63 64 7.221067 GCATCTCATAACGATACCTAAGCATAC 59.779 40.741 0.00 0.00 0.00 2.39
64 65 7.093945 TGCATCTCATAACGATACCTAAGCATA 60.094 37.037 0.00 0.00 0.00 3.14
65 66 6.102663 GCATCTCATAACGATACCTAAGCAT 58.897 40.000 0.00 0.00 0.00 3.79
66 67 5.010617 TGCATCTCATAACGATACCTAAGCA 59.989 40.000 0.00 0.00 0.00 3.91
67 68 5.470368 TGCATCTCATAACGATACCTAAGC 58.530 41.667 0.00 0.00 0.00 3.09
68 69 7.702772 GGTATGCATCTCATAACGATACCTAAG 59.297 40.741 0.19 0.00 39.22 2.18
69 70 7.544622 GGTATGCATCTCATAACGATACCTAA 58.455 38.462 0.19 0.00 39.22 2.69
70 71 7.096884 GGTATGCATCTCATAACGATACCTA 57.903 40.000 0.19 0.00 39.22 3.08
71 72 5.967088 GGTATGCATCTCATAACGATACCT 58.033 41.667 0.19 0.00 39.22 3.08
88 89 4.326504 AAGCATGGCATAAAAGGTATGC 57.673 40.909 0.00 9.37 46.94 3.14
89 90 6.039717 ACAGTAAGCATGGCATAAAAGGTATG 59.960 38.462 0.00 0.00 0.00 2.39
90 91 6.129179 ACAGTAAGCATGGCATAAAAGGTAT 58.871 36.000 0.00 0.00 0.00 2.73
91 92 5.505780 ACAGTAAGCATGGCATAAAAGGTA 58.494 37.500 0.00 0.00 0.00 3.08
92 93 4.344104 ACAGTAAGCATGGCATAAAAGGT 58.656 39.130 0.00 0.00 0.00 3.50
93 94 4.989279 ACAGTAAGCATGGCATAAAAGG 57.011 40.909 0.00 0.00 0.00 3.11
94 95 7.538575 AGTTAACAGTAAGCATGGCATAAAAG 58.461 34.615 8.61 0.00 0.00 2.27
95 96 7.461182 AGTTAACAGTAAGCATGGCATAAAA 57.539 32.000 8.61 0.00 0.00 1.52
96 97 6.183360 CGAGTTAACAGTAAGCATGGCATAAA 60.183 38.462 8.61 0.00 0.00 1.40
97 98 5.293324 CGAGTTAACAGTAAGCATGGCATAA 59.707 40.000 8.61 0.00 0.00 1.90
98 99 4.808895 CGAGTTAACAGTAAGCATGGCATA 59.191 41.667 8.61 0.00 0.00 3.14
99 100 3.623060 CGAGTTAACAGTAAGCATGGCAT 59.377 43.478 8.61 0.00 0.00 4.40
100 101 3.000041 CGAGTTAACAGTAAGCATGGCA 59.000 45.455 8.61 0.00 0.00 4.92
101 102 3.000727 ACGAGTTAACAGTAAGCATGGC 58.999 45.455 8.61 0.00 0.00 4.40
102 103 3.370978 CCACGAGTTAACAGTAAGCATGG 59.629 47.826 8.61 0.88 0.00 3.66
103 104 4.242475 TCCACGAGTTAACAGTAAGCATG 58.758 43.478 8.61 0.00 0.00 4.06
104 105 4.530710 TCCACGAGTTAACAGTAAGCAT 57.469 40.909 8.61 0.00 0.00 3.79
105 106 4.530710 ATCCACGAGTTAACAGTAAGCA 57.469 40.909 8.61 0.00 0.00 3.91
106 107 6.098017 ACTTATCCACGAGTTAACAGTAAGC 58.902 40.000 8.61 0.00 0.00 3.09
107 108 7.536855 AGACTTATCCACGAGTTAACAGTAAG 58.463 38.462 8.61 9.77 0.00 2.34
108 109 7.458409 AGACTTATCCACGAGTTAACAGTAA 57.542 36.000 8.61 0.51 0.00 2.24
109 110 8.565896 TTAGACTTATCCACGAGTTAACAGTA 57.434 34.615 8.61 0.00 0.00 2.74
110 111 5.979288 AGACTTATCCACGAGTTAACAGT 57.021 39.130 8.61 4.65 0.00 3.55
111 112 7.376336 CGATTAGACTTATCCACGAGTTAACAG 59.624 40.741 8.61 3.98 0.00 3.16
112 113 7.066163 TCGATTAGACTTATCCACGAGTTAACA 59.934 37.037 8.61 0.00 0.00 2.41
113 114 7.412853 TCGATTAGACTTATCCACGAGTTAAC 58.587 38.462 0.00 0.00 0.00 2.01
114 115 7.558161 TCGATTAGACTTATCCACGAGTTAA 57.442 36.000 0.00 0.00 0.00 2.01
115 116 7.558161 TTCGATTAGACTTATCCACGAGTTA 57.442 36.000 0.00 0.00 0.00 2.24
116 117 6.446781 TTCGATTAGACTTATCCACGAGTT 57.553 37.500 0.00 0.00 0.00 3.01
117 118 6.446781 TTTCGATTAGACTTATCCACGAGT 57.553 37.500 0.00 0.00 0.00 4.18
118 119 7.488471 ACTTTTTCGATTAGACTTATCCACGAG 59.512 37.037 0.00 0.00 0.00 4.18
119 120 7.274904 CACTTTTTCGATTAGACTTATCCACGA 59.725 37.037 0.00 0.00 0.00 4.35
120 121 7.391786 CACTTTTTCGATTAGACTTATCCACG 58.608 38.462 0.00 0.00 0.00 4.94
121 122 7.064728 AGCACTTTTTCGATTAGACTTATCCAC 59.935 37.037 0.00 0.00 0.00 4.02
122 123 7.103641 AGCACTTTTTCGATTAGACTTATCCA 58.896 34.615 0.00 0.00 0.00 3.41
123 124 7.541122 AGCACTTTTTCGATTAGACTTATCC 57.459 36.000 0.00 0.00 0.00 2.59
133 134 9.353999 GTTGGAAATATTAGCACTTTTTCGATT 57.646 29.630 0.00 0.00 0.00 3.34
134 135 8.519526 TGTTGGAAATATTAGCACTTTTTCGAT 58.480 29.630 0.00 0.00 0.00 3.59
135 136 7.806014 GTGTTGGAAATATTAGCACTTTTTCGA 59.194 33.333 0.00 0.00 0.00 3.71
136 137 7.593273 TGTGTTGGAAATATTAGCACTTTTTCG 59.407 33.333 5.60 0.00 0.00 3.46
137 138 8.810652 TGTGTTGGAAATATTAGCACTTTTTC 57.189 30.769 5.60 0.00 0.00 2.29
138 139 7.384932 GCTGTGTTGGAAATATTAGCACTTTTT 59.615 33.333 5.60 0.00 32.90 1.94
139 140 6.868339 GCTGTGTTGGAAATATTAGCACTTTT 59.132 34.615 5.60 0.00 32.90 2.27
140 141 6.389906 GCTGTGTTGGAAATATTAGCACTTT 58.610 36.000 5.60 0.00 32.90 2.66
141 142 5.105756 GGCTGTGTTGGAAATATTAGCACTT 60.106 40.000 5.27 0.00 33.78 3.16
142 143 4.399303 GGCTGTGTTGGAAATATTAGCACT 59.601 41.667 5.27 0.00 33.78 4.40
143 144 4.440112 GGGCTGTGTTGGAAATATTAGCAC 60.440 45.833 5.27 1.98 33.78 4.40
144 145 3.699038 GGGCTGTGTTGGAAATATTAGCA 59.301 43.478 5.27 0.00 33.78 3.49
145 146 3.699038 TGGGCTGTGTTGGAAATATTAGC 59.301 43.478 0.00 0.00 32.25 3.09
146 147 4.097892 GGTGGGCTGTGTTGGAAATATTAG 59.902 45.833 0.00 0.00 0.00 1.73
147 148 4.020543 GGTGGGCTGTGTTGGAAATATTA 58.979 43.478 0.00 0.00 0.00 0.98
148 149 2.831526 GGTGGGCTGTGTTGGAAATATT 59.168 45.455 0.00 0.00 0.00 1.28
149 150 2.456577 GGTGGGCTGTGTTGGAAATAT 58.543 47.619 0.00 0.00 0.00 1.28
150 151 1.549037 GGGTGGGCTGTGTTGGAAATA 60.549 52.381 0.00 0.00 0.00 1.40
151 152 0.831711 GGGTGGGCTGTGTTGGAAAT 60.832 55.000 0.00 0.00 0.00 2.17
152 153 1.456705 GGGTGGGCTGTGTTGGAAA 60.457 57.895 0.00 0.00 0.00 3.13
153 154 2.197324 GGGTGGGCTGTGTTGGAA 59.803 61.111 0.00 0.00 0.00 3.53
154 155 3.099841 TGGGTGGGCTGTGTTGGA 61.100 61.111 0.00 0.00 0.00 3.53
155 156 2.598394 CTGGGTGGGCTGTGTTGG 60.598 66.667 0.00 0.00 0.00 3.77
156 157 2.598394 CCTGGGTGGGCTGTGTTG 60.598 66.667 0.00 0.00 0.00 3.33
194 195 1.515952 CTCGCTCCAGCTTCTCGTG 60.516 63.158 0.00 0.00 39.32 4.35
215 216 2.911819 TCGATGGAAAATTGTTCGGC 57.088 45.000 0.00 0.00 0.00 5.54
224 225 1.597195 CGGATTGCGATCGATGGAAAA 59.403 47.619 21.57 5.12 32.84 2.29
228 229 1.855338 CACGGATTGCGATCGATGG 59.145 57.895 21.57 1.74 32.84 3.51
254 255 1.750332 CGCTCTATTCCCCAATGCCAA 60.750 52.381 0.00 0.00 0.00 4.52
256 257 0.108585 TCGCTCTATTCCCCAATGCC 59.891 55.000 0.00 0.00 0.00 4.40
291 293 1.227089 CGGATGTCCTCCAGCTTCG 60.227 63.158 0.00 0.00 45.24 3.79
307 309 0.739813 CCGACTAAGGGCTTGTTCGG 60.740 60.000 0.00 0.00 39.90 4.30
355 357 6.294397 GGAAGAGTCGACACCTAAAAGACTAA 60.294 42.308 19.50 0.00 41.61 2.24
356 358 5.182760 GGAAGAGTCGACACCTAAAAGACTA 59.817 44.000 19.50 0.00 41.61 2.59
357 359 4.022155 GGAAGAGTCGACACCTAAAAGACT 60.022 45.833 19.50 0.00 43.88 3.24
358 360 4.236147 GGAAGAGTCGACACCTAAAAGAC 58.764 47.826 19.50 3.44 0.00 3.01
362 364 3.655276 GTGGAAGAGTCGACACCTAAA 57.345 47.619 19.50 0.00 33.01 1.85
372 374 7.201652 GCAAAATTCTACATAGGTGGAAGAGTC 60.202 40.741 11.92 0.00 45.90 3.36
378 380 4.839121 ACGCAAAATTCTACATAGGTGGA 58.161 39.130 0.00 0.00 32.08 4.02
398 400 4.670621 GCTCATCAAAAGTGTGTTTGTACG 59.329 41.667 0.00 0.00 39.16 3.67
400 402 4.572795 TCGCTCATCAAAAGTGTGTTTGTA 59.427 37.500 0.00 0.00 39.16 2.41
402 404 3.725740 GTCGCTCATCAAAAGTGTGTTTG 59.274 43.478 0.00 0.00 39.41 2.93
438 440 1.521423 CGCCTTAGTGTAATAGCGTGC 59.479 52.381 0.00 0.00 36.32 5.34
450 452 1.407437 CCTCCAAATGCTCGCCTTAGT 60.407 52.381 0.00 0.00 0.00 2.24
473 475 1.203994 GCAAGCATGAAGGAGCAACAT 59.796 47.619 0.00 0.00 0.00 2.71
484 490 4.705991 TGGAACATTAATCTGCAAGCATGA 59.294 37.500 0.00 0.00 0.00 3.07
485 491 5.001237 TGGAACATTAATCTGCAAGCATG 57.999 39.130 0.00 0.00 0.00 4.06
486 492 5.664294 TTGGAACATTAATCTGCAAGCAT 57.336 34.783 0.00 0.00 39.30 3.79
487 493 5.010922 ACTTTGGAACATTAATCTGCAAGCA 59.989 36.000 0.00 0.00 39.30 3.91
506 512 9.910511 GCAAGCATTTCATCAATTTATACTTTG 57.089 29.630 0.00 0.00 0.00 2.77
513 519 4.431809 CCCGCAAGCATTTCATCAATTTA 58.568 39.130 0.00 0.00 0.00 1.40
515 521 2.419021 CCCCGCAAGCATTTCATCAATT 60.419 45.455 0.00 0.00 0.00 2.32
520 526 2.894919 GCCCCGCAAGCATTTCAT 59.105 55.556 0.00 0.00 0.00 2.57
521 527 3.746889 CGCCCCGCAAGCATTTCA 61.747 61.111 0.00 0.00 0.00 2.69
533 539 1.988834 CTAAATGGTTCGCACGCCCC 61.989 60.000 0.00 0.00 0.00 5.80
537 543 0.725117 GGTCCTAAATGGTTCGCACG 59.275 55.000 0.00 0.00 37.07 5.34
539 545 1.349688 ACTGGTCCTAAATGGTTCGCA 59.650 47.619 0.00 0.00 37.07 5.10
542 548 5.944007 ACATTGTACTGGTCCTAAATGGTTC 59.056 40.000 0.00 0.00 37.07 3.62
544 550 5.514500 ACATTGTACTGGTCCTAAATGGT 57.486 39.130 0.00 0.00 37.07 3.55
547 553 9.582648 AACTTTTACATTGTACTGGTCCTAAAT 57.417 29.630 0.00 0.00 0.00 1.40
571 578 5.220491 GCAATCGAGATTGGTAGAGTTGAAC 60.220 44.000 22.56 0.00 46.14 3.18
587 594 0.933097 CCACGGAGATTGCAATCGAG 59.067 55.000 28.88 24.78 40.35 4.04
589 596 1.062587 GAACCACGGAGATTGCAATCG 59.937 52.381 28.88 21.90 40.35 3.34
600 607 2.675844 CAATTTATGCTCGAACCACGGA 59.324 45.455 0.00 0.00 42.82 4.69
655 677 0.802494 CACGCCAAGGTACCAATGAC 59.198 55.000 15.94 4.29 0.00 3.06
656 678 0.398696 ACACGCCAAGGTACCAATGA 59.601 50.000 15.94 0.00 0.00 2.57
666 688 2.485426 ACAGATGATTTCACACGCCAAG 59.515 45.455 0.00 0.00 0.00 3.61
699 747 0.249868 TGTGACTCCGTTTGAGCCTG 60.250 55.000 0.00 0.00 45.61 4.85
732 781 1.512926 AACTCGTCGCTTTCATTGCT 58.487 45.000 0.00 0.00 0.00 3.91
771 1105 6.308371 TCATTACCCTTCAAACTTTTCGTC 57.692 37.500 0.00 0.00 0.00 4.20
820 1154 1.190323 CGATAGGCGCGAATTTGTCTC 59.810 52.381 12.10 0.00 0.00 3.36
873 1207 2.999185 ATTCTTCCTTCTTTGGGCCA 57.001 45.000 0.00 0.00 0.00 5.36
981 1316 4.620803 GCCATGGTTTTCTCTCTCTTCGTA 60.621 45.833 14.67 0.00 0.00 3.43
1224 1559 2.247358 GAGTCCTGGATGATCCTCCTC 58.753 57.143 16.86 8.44 37.46 3.71
1265 1604 4.628074 TGTTCGTCACTAGAAAAAGGAGG 58.372 43.478 0.00 0.00 0.00 4.30
1267 1606 5.301045 TCTCTGTTCGTCACTAGAAAAAGGA 59.699 40.000 0.00 0.00 0.00 3.36
1268 1607 5.402867 GTCTCTGTTCGTCACTAGAAAAAGG 59.597 44.000 0.00 0.00 0.00 3.11
1270 1609 5.068723 AGGTCTCTGTTCGTCACTAGAAAAA 59.931 40.000 0.00 0.00 0.00 1.94
1280 1619 1.836802 ACCCTAGGTCTCTGTTCGTC 58.163 55.000 8.29 0.00 0.00 4.20
1325 1664 2.947243 GCCAATCCCAGCAGAGATTCAA 60.947 50.000 0.00 0.00 30.29 2.69
1326 1665 1.409241 GCCAATCCCAGCAGAGATTCA 60.409 52.381 0.00 0.00 30.29 2.57
1338 1677 4.077822 CTCCTTCATTATCTGCCAATCCC 58.922 47.826 0.00 0.00 0.00 3.85
1537 1877 6.039941 TGTTAACGTTGATTGGGAAAGAATGT 59.960 34.615 11.99 0.00 0.00 2.71
1554 1894 1.537638 TGGCGCAAATCATGTTAACGT 59.462 42.857 10.83 0.00 0.00 3.99
1564 1904 0.109179 TTGCTGACATGGCGCAAATC 60.109 50.000 22.69 0.20 40.33 2.17
1571 1911 1.108776 ATCCACATTGCTGACATGGC 58.891 50.000 0.00 0.00 0.00 4.40
1592 1932 3.739519 GCTCACACCTGACCTAAGCATAG 60.740 52.174 0.00 0.00 0.00 2.23
1757 2099 3.682292 GACTCGGTCACCCATGGGC 62.682 68.421 31.73 14.70 39.32 5.36
1770 2112 5.000012 AGCACAAGGAATACTAAGACTCG 58.000 43.478 0.00 0.00 0.00 4.18
1777 2119 8.946085 CAAATGAGTTTAGCACAAGGAATACTA 58.054 33.333 0.00 0.00 0.00 1.82
1879 2222 1.065491 TCATGAAGGCGTGGCAATACT 60.065 47.619 0.00 0.00 0.00 2.12
1946 2290 6.183360 TGGTTAATAGAGGATGACGAAGAAGG 60.183 42.308 0.00 0.00 0.00 3.46
1953 2301 7.265673 TCTTTCTTGGTTAATAGAGGATGACG 58.734 38.462 0.00 0.00 0.00 4.35
2115 2466 2.095969 TCAAGTTTTTAGCATGGTCGCG 60.096 45.455 0.00 0.00 36.85 5.87
2123 2474 7.875554 ACCTTCTTTTGTTTCAAGTTTTTAGCA 59.124 29.630 0.00 0.00 0.00 3.49
2134 2485 5.398603 TTTGCTGACCTTCTTTTGTTTCA 57.601 34.783 0.00 0.00 0.00 2.69
2211 2572 0.470766 AAGTACAGGTTGTGCCGGAA 59.529 50.000 5.05 0.00 43.70 4.30
2212 2573 0.250124 CAAGTACAGGTTGTGCCGGA 60.250 55.000 5.05 0.00 43.70 5.14
2213 2574 0.534203 ACAAGTACAGGTTGTGCCGG 60.534 55.000 0.00 0.00 43.70 6.13
2229 2590 3.522759 TCCTTACACCACATCCCTACAA 58.477 45.455 0.00 0.00 0.00 2.41
2426 2787 5.046304 AGAGCTGACATTTCCTTAGTGCTAA 60.046 40.000 0.00 0.00 0.00 3.09
2434 2795 3.073650 ACAGGAAGAGCTGACATTTCCTT 59.926 43.478 0.00 0.00 45.35 3.36
2444 2805 0.617413 ACCATCCACAGGAAGAGCTG 59.383 55.000 0.00 0.00 34.34 4.24
2471 2832 5.815581 TGGGTGCTAACATAGACAAAAGAT 58.184 37.500 0.00 0.00 0.00 2.40
2483 2844 5.366482 TTGATATAGCTTGGGTGCTAACA 57.634 39.130 0.00 0.34 46.81 2.41
2487 2848 5.316158 AGAATTGATATAGCTTGGGTGCT 57.684 39.130 0.00 0.00 46.11 4.40
2488 2849 5.048434 GGAAGAATTGATATAGCTTGGGTGC 60.048 44.000 0.00 0.00 0.00 5.01
2889 3252 9.008289 GTAACGAGTGCTCTTACTTTAAGATAC 57.992 37.037 0.00 0.00 43.32 2.24
2890 3253 8.733458 TGTAACGAGTGCTCTTACTTTAAGATA 58.267 33.333 0.00 0.00 43.32 1.98
2969 3334 6.824305 ACCACATTGTTCCAGATCTTTTAG 57.176 37.500 0.00 0.00 0.00 1.85
3017 3382 6.090129 CACGAAATATGGTTGGTAAAACAGG 58.910 40.000 0.00 0.00 36.14 4.00
3038 3403 6.161381 ACAGTTAGTAAGAAACCATACCACG 58.839 40.000 0.00 0.00 0.00 4.94
3055 3420 8.671921 ACAAAGATGCAGATTATTGACAGTTAG 58.328 33.333 0.00 0.00 0.00 2.34
3089 3459 5.437289 TGTTGATTAACAGAGCAACCAAG 57.563 39.130 0.00 0.00 41.66 3.61
3183 3554 1.970640 ACCCAAAACCTCCATCTTTGC 59.029 47.619 0.00 0.00 0.00 3.68
3221 3592 8.006298 TCTAAACTGATTGTGTTCAAAATGGT 57.994 30.769 0.00 0.00 37.11 3.55
3261 3632 6.786207 TCTGTGTTCACATCTAGAATAGTCG 58.214 40.000 6.09 0.00 40.38 4.18
3268 3639 7.216494 TCATGTTTTCTGTGTTCACATCTAGA 58.784 34.615 6.09 0.00 0.00 2.43
3332 3704 6.068010 TCAACTTGCAAAATCTCTAAGGGAA 58.932 36.000 0.00 0.00 0.00 3.97
3339 3711 6.645790 ATGAACTCAACTTGCAAAATCTCT 57.354 33.333 0.00 0.00 0.00 3.10
3384 3790 1.985159 ACCTAACCAACATCAGCCTCA 59.015 47.619 0.00 0.00 0.00 3.86
3467 3875 6.226787 AGCATCATAGCTAGTCATTACAACC 58.773 40.000 0.00 0.00 44.50 3.77
3502 3911 7.869429 CCAGTTTAGAAATGAAGCACAGAAAAT 59.131 33.333 0.00 0.00 0.00 1.82
3547 3957 5.996644 TCTCGGCCCAAATTTATAGAGAAA 58.003 37.500 0.00 0.00 31.54 2.52
3590 4000 8.141835 ACAAACAATAATTTTTCTCCTGCAAC 57.858 30.769 0.00 0.00 0.00 4.17
3593 4003 7.071414 GCAACAAACAATAATTTTTCTCCTGC 58.929 34.615 0.00 0.00 0.00 4.85
3650 4270 9.221775 GCAATTAATCACCTAATTCACTAAACG 57.778 33.333 0.00 0.00 30.67 3.60
3727 4347 2.274542 TCCACTAACACACCCCATCAT 58.725 47.619 0.00 0.00 0.00 2.45
3751 4371 8.947055 AATAAGGCAAAATGAACATGTTATCC 57.053 30.769 11.95 0.00 0.00 2.59
3847 4476 8.696374 CCTAACAGAAGACTAAGGATGTAATGA 58.304 37.037 0.00 0.00 0.00 2.57
3848 4477 8.478877 ACCTAACAGAAGACTAAGGATGTAATG 58.521 37.037 0.00 0.00 0.00 1.90
3849 4478 8.611051 ACCTAACAGAAGACTAAGGATGTAAT 57.389 34.615 0.00 0.00 0.00 1.89
3850 4479 8.431910 AACCTAACAGAAGACTAAGGATGTAA 57.568 34.615 0.00 0.00 0.00 2.41
3851 4480 8.311836 CAAACCTAACAGAAGACTAAGGATGTA 58.688 37.037 0.00 0.00 0.00 2.29
3852 4481 6.936968 AACCTAACAGAAGACTAAGGATGT 57.063 37.500 0.00 0.00 0.00 3.06
3853 4482 6.092807 GCAAACCTAACAGAAGACTAAGGATG 59.907 42.308 0.00 0.00 0.00 3.51
3854 4483 6.013293 AGCAAACCTAACAGAAGACTAAGGAT 60.013 38.462 0.00 0.00 0.00 3.24
3981 4612 3.057806 AGCTAATTACGTGGTTTTGTGCC 60.058 43.478 0.00 0.00 0.00 5.01
4082 4717 7.843490 TTTCAGTTACAGGCATACAGTATTC 57.157 36.000 0.00 0.00 0.00 1.75
4217 4852 0.464735 CAACACAACCGGGAGAACCA 60.465 55.000 6.32 0.00 40.22 3.67
4222 4857 0.107081 TACCACAACACAACCGGGAG 59.893 55.000 6.32 0.00 0.00 4.30
4236 4871 2.486982 TCTCTAACACTCGCAGTACCAC 59.513 50.000 0.00 0.00 0.00 4.16
4280 4915 0.957395 CGCACCAGGAGCAACTCATT 60.957 55.000 9.78 0.00 31.08 2.57
4291 4926 1.933115 GCATACCAAACCGCACCAGG 61.933 60.000 0.00 0.00 37.30 4.45
4295 4930 0.727793 CAACGCATACCAAACCGCAC 60.728 55.000 0.00 0.00 0.00 5.34
4303 4938 3.627395 AGGAATCTTCAACGCATACCA 57.373 42.857 0.00 0.00 0.00 3.25
4307 4942 3.614870 GCCAAAAGGAATCTTCAACGCAT 60.615 43.478 0.00 0.00 31.82 4.73
4313 4948 2.164219 GCGATGCCAAAAGGAATCTTCA 59.836 45.455 1.26 0.00 31.82 3.02
4333 4978 1.270550 CACAATCCAACAACCTCAGGC 59.729 52.381 0.00 0.00 0.00 4.85
4343 4988 4.268405 CACTCAAAGTTTGCACAATCCAAC 59.732 41.667 10.90 0.00 0.00 3.77
4361 5006 6.947158 TGCATATAAATATCAATGGGCACTCA 59.053 34.615 0.00 0.00 0.00 3.41
4383 5028 3.446799 GAGACTGCAAAACAAACATGCA 58.553 40.909 0.00 0.00 46.97 3.96
4397 5042 1.230324 AAAGAAAGGCACGAGACTGC 58.770 50.000 0.00 0.00 29.21 4.40
4449 5094 8.592809 AGGCCTTTGTTGATCATAAACAATAAA 58.407 29.630 11.27 0.00 44.57 1.40
4452 5097 6.351286 GGAGGCCTTTGTTGATCATAAACAAT 60.351 38.462 6.77 0.00 44.57 2.71
4464 5109 1.962144 CAGCAGGAGGCCTTTGTTG 59.038 57.895 6.77 13.47 46.50 3.33
4465 5110 1.905354 GCAGCAGGAGGCCTTTGTT 60.905 57.895 6.77 3.97 46.50 2.83
4466 5111 2.282745 GCAGCAGGAGGCCTTTGT 60.283 61.111 6.77 0.00 46.50 2.83
4477 5122 1.155042 GACAGTCAAGAAGGCAGCAG 58.845 55.000 0.00 0.00 0.00 4.24
4493 5138 4.507710 GATCAGCAAACTAGTGATGGACA 58.492 43.478 0.00 0.00 35.60 4.02
4500 5145 3.875727 CCAGATGGATCAGCAAACTAGTG 59.124 47.826 0.00 0.00 37.39 2.74
4511 5156 1.473788 CGTGCATGACCAGATGGATCA 60.474 52.381 5.72 6.27 38.94 2.92
4512 5157 1.224075 CGTGCATGACCAGATGGATC 58.776 55.000 5.72 0.48 38.94 3.36
4513 5158 0.179037 CCGTGCATGACCAGATGGAT 60.179 55.000 7.72 0.00 38.94 3.41
4516 5161 1.028330 AAGCCGTGCATGACCAGATG 61.028 55.000 7.72 0.00 0.00 2.90
4517 5162 0.745845 GAAGCCGTGCATGACCAGAT 60.746 55.000 7.72 0.00 0.00 2.90
4519 5164 2.401766 GGAAGCCGTGCATGACCAG 61.402 63.158 7.72 0.00 0.00 4.00
4520 5165 2.359850 GGAAGCCGTGCATGACCA 60.360 61.111 7.72 0.00 0.00 4.02
4522 5167 1.026182 TGATGGAAGCCGTGCATGAC 61.026 55.000 7.72 0.00 38.62 3.06
4523 5168 0.745486 CTGATGGAAGCCGTGCATGA 60.745 55.000 7.72 0.00 38.62 3.07
4524 5169 1.721664 CCTGATGGAAGCCGTGCATG 61.722 60.000 0.00 0.00 38.62 4.06
4526 5171 1.913951 ATCCTGATGGAAGCCGTGCA 61.914 55.000 0.00 0.00 46.80 4.57
4527 5172 1.153086 ATCCTGATGGAAGCCGTGC 60.153 57.895 0.00 0.00 46.80 5.34
4529 5174 0.911769 TTCATCCTGATGGAAGCCGT 59.088 50.000 7.26 0.00 46.80 5.68
4530 5175 2.149578 GATTCATCCTGATGGAAGCCG 58.850 52.381 7.26 0.00 46.80 5.52
4531 5176 3.505480 AGATTCATCCTGATGGAAGCC 57.495 47.619 7.26 0.00 46.80 4.35
4533 5178 7.584122 ATCAAAAGATTCATCCTGATGGAAG 57.416 36.000 7.26 0.00 46.80 3.46
4534 5179 7.966339 AATCAAAAGATTCATCCTGATGGAA 57.034 32.000 7.26 1.89 46.80 3.53
4536 5181 7.553334 ACAAATCAAAAGATTCATCCTGATGG 58.447 34.615 7.26 0.00 39.24 3.51
4573 5247 5.924254 ACAAGTGCAAAACTCATGATTCATG 59.076 36.000 18.71 18.71 42.60 3.07
4607 5281 3.057245 GGGGATCTCTTTTGTTTGTCAGC 60.057 47.826 0.00 0.00 0.00 4.26
4616 5290 3.955471 TGCTACTTGGGGATCTCTTTTG 58.045 45.455 0.00 0.00 0.00 2.44
4634 5308 4.382362 GCCAAAAGCTTTATCTCCAATGCT 60.382 41.667 13.10 0.00 39.74 3.79
4736 5412 4.898861 TGCAAAGTAAAGGATCCAAAAGGT 59.101 37.500 15.82 0.00 0.00 3.50
4753 5429 5.112220 TCACACTATTCTGCTTTGCAAAG 57.888 39.130 30.70 30.70 38.41 2.77
4782 5458 6.352222 CCACTAATCCACACTAAAGATGGAGT 60.352 42.308 11.55 11.26 45.53 3.85
4985 5706 7.955864 GCTACTAGAAATGTTTACCGTTTTCAG 59.044 37.037 0.00 0.00 32.37 3.02
4992 5713 4.427312 ACCGCTACTAGAAATGTTTACCG 58.573 43.478 0.00 0.00 0.00 4.02
5026 5747 5.765510 ACCTCCTTTTGCACCATATTCATA 58.234 37.500 0.00 0.00 0.00 2.15
5037 5758 3.181440 ACAAGATCTGACCTCCTTTTGCA 60.181 43.478 0.00 0.00 0.00 4.08
5050 5771 9.515020 GAGACTCTTCTTATGTAACAAGATCTG 57.485 37.037 0.00 0.00 32.27 2.90
5088 5809 3.564644 GCTTGGATCTGATGGAGAACATG 59.435 47.826 0.00 0.00 40.72 3.21
5160 5883 7.110155 TCTCAAATTTCCTGTTATCCACTACC 58.890 38.462 0.00 0.00 0.00 3.18
5177 5900 5.266788 TGCATTTCCCTCTCATCTCAAATT 58.733 37.500 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.