Multiple sequence alignment - TraesCS7A01G323300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G323300 chr7A 100.000 2651 0 0 1 2651 470590547 470593197 0.000000e+00 4896.0
1 TraesCS7A01G323300 chr7D 87.918 1763 104 39 194 1870 409491152 409492891 0.000000e+00 1975.0
2 TraesCS7A01G323300 chr7D 89.180 305 28 4 2324 2627 409500107 409500407 2.490000e-100 375.0
3 TraesCS7A01G323300 chr7D 94.203 138 7 1 1855 1991 409499486 409499623 2.670000e-50 209.0
4 TraesCS7A01G323300 chr7D 89.222 167 12 3 1 165 409490990 409491152 1.240000e-48 204.0
5 TraesCS7A01G323300 chr7B 90.646 1486 69 35 561 1990 424054307 424055778 0.000000e+00 1910.0
6 TraesCS7A01G323300 chr7B 86.626 329 35 6 2324 2651 424056322 424056642 3.250000e-94 355.0
7 TraesCS7A01G323300 chr7B 86.070 201 26 1 413 611 424054095 424054295 5.750000e-52 215.0
8 TraesCS7A01G323300 chr7B 86.772 189 14 7 1993 2171 424055878 424056065 1.610000e-47 200.0
9 TraesCS7A01G323300 chr3D 76.829 492 73 31 1175 1636 488060328 488060808 3.410000e-59 239.0
10 TraesCS7A01G323300 chr3B 76.065 493 75 34 1175 1636 650841911 650842391 1.600000e-52 217.0
11 TraesCS7A01G323300 chr3A 100.000 29 0 0 587 615 705368709 705368737 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G323300 chr7A 470590547 470593197 2650 False 4896.0 4896 100.0000 1 2651 1 chr7A.!!$F1 2650
1 TraesCS7A01G323300 chr7D 409490990 409492891 1901 False 1089.5 1975 88.5700 1 1870 2 chr7D.!!$F1 1869
2 TraesCS7A01G323300 chr7D 409499486 409500407 921 False 292.0 375 91.6915 1855 2627 2 chr7D.!!$F2 772
3 TraesCS7A01G323300 chr7B 424054095 424056642 2547 False 670.0 1910 87.5285 413 2651 4 chr7B.!!$F1 2238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 180 0.038159 AAAGACGAGGGACAGCGAAG 60.038 55.0 0.0 0.0 32.97 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2410 0.182775 GCGGAGGTATCACCCCAATT 59.817 55.0 0.0 0.0 39.75 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.923684 CCGCCAAGCTACAAAATTTAGAAAA 59.076 36.000 0.00 0.00 0.00 2.29
32 33 9.301153 CGCCAAGCTACAAAATTTAGAAAATAT 57.699 29.630 0.00 0.00 0.00 1.28
113 114 8.375506 ACTGTTTATTATCTTCTCCAGACAACA 58.624 33.333 0.00 0.00 32.83 3.33
126 127 3.104512 CAGACAACATACACCTAGGGGA 58.895 50.000 20.81 0.38 36.25 4.81
144 147 0.898789 GAGGTTGACTCGACCCCTGA 60.899 60.000 11.46 0.00 38.65 3.86
145 148 1.186267 AGGTTGACTCGACCCCTGAC 61.186 60.000 11.46 0.00 38.65 3.51
165 168 1.589320 CGTCGGTCAAAACAAAGACGA 59.411 47.619 9.78 0.00 44.52 4.20
167 170 2.033151 GTCGGTCAAAACAAAGACGAGG 60.033 50.000 0.00 0.00 35.63 4.63
168 171 1.263217 CGGTCAAAACAAAGACGAGGG 59.737 52.381 0.00 0.00 35.63 4.30
169 172 2.567985 GGTCAAAACAAAGACGAGGGA 58.432 47.619 0.00 0.00 35.63 4.20
170 173 2.289820 GGTCAAAACAAAGACGAGGGAC 59.710 50.000 0.00 0.00 35.63 4.46
171 174 2.940410 GTCAAAACAAAGACGAGGGACA 59.060 45.455 0.00 0.00 0.00 4.02
172 175 3.002348 GTCAAAACAAAGACGAGGGACAG 59.998 47.826 0.00 0.00 0.00 3.51
173 176 1.594331 AAACAAAGACGAGGGACAGC 58.406 50.000 0.00 0.00 0.00 4.40
174 177 0.600255 AACAAAGACGAGGGACAGCG 60.600 55.000 0.00 0.00 34.72 5.18
175 178 1.289066 CAAAGACGAGGGACAGCGA 59.711 57.895 0.00 0.00 32.97 4.93
176 179 0.319555 CAAAGACGAGGGACAGCGAA 60.320 55.000 0.00 0.00 32.97 4.70
177 180 0.038159 AAAGACGAGGGACAGCGAAG 60.038 55.000 0.00 0.00 32.97 3.79
178 181 1.179814 AAGACGAGGGACAGCGAAGT 61.180 55.000 0.00 0.00 32.97 3.01
179 182 0.322277 AGACGAGGGACAGCGAAGTA 60.322 55.000 0.00 0.00 32.97 2.24
180 183 0.099082 GACGAGGGACAGCGAAGTAG 59.901 60.000 0.00 0.00 32.97 2.57
181 184 1.226717 CGAGGGACAGCGAAGTAGC 60.227 63.158 0.00 0.00 37.41 3.58
182 185 1.142097 GAGGGACAGCGAAGTAGCC 59.858 63.158 0.00 0.00 38.01 3.93
183 186 1.605058 GAGGGACAGCGAAGTAGCCA 61.605 60.000 0.00 0.00 38.01 4.75
184 187 1.448013 GGGACAGCGAAGTAGCCAC 60.448 63.158 0.00 0.00 38.01 5.01
185 188 1.292223 GGACAGCGAAGTAGCCACA 59.708 57.895 0.00 0.00 38.01 4.17
186 189 0.320421 GGACAGCGAAGTAGCCACAA 60.320 55.000 0.00 0.00 38.01 3.33
187 190 1.676014 GGACAGCGAAGTAGCCACAAT 60.676 52.381 0.00 0.00 38.01 2.71
188 191 2.418197 GGACAGCGAAGTAGCCACAATA 60.418 50.000 0.00 0.00 38.01 1.90
189 192 3.458189 GACAGCGAAGTAGCCACAATAT 58.542 45.455 0.00 0.00 38.01 1.28
190 193 3.871594 GACAGCGAAGTAGCCACAATATT 59.128 43.478 0.00 0.00 38.01 1.28
191 194 3.623060 ACAGCGAAGTAGCCACAATATTG 59.377 43.478 14.01 14.01 38.01 1.90
192 195 3.871006 CAGCGAAGTAGCCACAATATTGA 59.129 43.478 22.16 0.00 38.01 2.57
193 196 4.025396 CAGCGAAGTAGCCACAATATTGAG 60.025 45.833 22.16 13.85 38.01 3.02
194 197 3.248602 GCGAAGTAGCCACAATATTGAGG 59.751 47.826 23.26 23.26 41.19 3.86
195 198 4.442706 CGAAGTAGCCACAATATTGAGGT 58.557 43.478 26.46 20.74 40.49 3.85
201 204 3.973973 AGCCACAATATTGAGGTAGCCTA 59.026 43.478 26.46 0.00 40.49 3.93
238 241 1.228094 TTGTCCTCGGCACATGCAA 60.228 52.632 6.15 0.00 44.36 4.08
242 245 1.672030 CCTCGGCACATGCAAGTGA 60.672 57.895 25.26 4.06 42.05 3.41
244 247 0.110056 CTCGGCACATGCAAGTGAAC 60.110 55.000 25.26 15.20 42.05 3.18
264 267 2.512286 CATGCACGTGCCGAGGAT 60.512 61.111 35.72 20.32 41.18 3.24
266 269 1.068083 ATGCACGTGCCGAGGATAG 59.932 57.895 35.72 0.00 41.18 2.08
288 291 5.014858 AGTGATCATCTTGGCATTGAAAGT 58.985 37.500 0.00 0.00 0.00 2.66
300 303 3.365767 GCATTGAAAGTCTCAACTCTGCC 60.366 47.826 0.00 0.00 46.80 4.85
310 313 5.471456 AGTCTCAACTCTGCCTTTGTTTATG 59.529 40.000 0.00 0.00 0.00 1.90
314 317 5.009610 TCAACTCTGCCTTTGTTTATGTTCC 59.990 40.000 0.00 0.00 0.00 3.62
324 327 7.148205 GCCTTTGTTTATGTTCCCGTAATTAGA 60.148 37.037 0.00 0.00 0.00 2.10
325 328 8.732531 CCTTTGTTTATGTTCCCGTAATTAGAA 58.267 33.333 0.00 0.00 0.00 2.10
340 343 8.911662 CCGTAATTAGAAGGTGTTTCAATTTTG 58.088 33.333 0.00 0.00 38.31 2.44
384 388 5.361135 TGTACATGACAAACATTCTGCTG 57.639 39.130 0.00 0.00 37.07 4.41
385 389 3.928727 ACATGACAAACATTCTGCTGG 57.071 42.857 0.00 0.00 37.07 4.85
386 390 2.029649 ACATGACAAACATTCTGCTGGC 60.030 45.455 0.00 0.00 37.07 4.85
387 391 0.592637 TGACAAACATTCTGCTGGCG 59.407 50.000 0.00 0.00 0.00 5.69
388 392 0.109597 GACAAACATTCTGCTGGCGG 60.110 55.000 0.00 0.00 0.00 6.13
389 393 0.823356 ACAAACATTCTGCTGGCGGT 60.823 50.000 0.00 0.00 0.00 5.68
390 394 0.109597 CAAACATTCTGCTGGCGGTC 60.110 55.000 0.00 0.00 0.00 4.79
391 395 0.537143 AAACATTCTGCTGGCGGTCA 60.537 50.000 0.00 0.00 0.00 4.02
392 396 0.957395 AACATTCTGCTGGCGGTCAG 60.957 55.000 4.96 4.96 46.03 3.51
393 397 1.376424 CATTCTGCTGGCGGTCAGT 60.376 57.895 11.77 0.00 45.08 3.41
394 398 1.376424 ATTCTGCTGGCGGTCAGTG 60.376 57.895 11.77 5.04 45.08 3.66
395 399 2.809861 ATTCTGCTGGCGGTCAGTGG 62.810 60.000 11.77 4.69 45.08 4.00
399 403 4.680237 CTGGCGGTCAGTGGCGAA 62.680 66.667 0.34 0.00 38.64 4.70
400 404 4.680237 TGGCGGTCAGTGGCGAAG 62.680 66.667 0.00 0.00 34.03 3.79
401 405 4.373116 GGCGGTCAGTGGCGAAGA 62.373 66.667 0.00 0.00 0.00 2.87
406 410 0.530870 GGTCAGTGGCGAAGATAGGC 60.531 60.000 0.00 0.00 0.00 3.93
439 455 7.592938 TGCAATTTCATCTTACAAAGTACTGG 58.407 34.615 0.00 0.00 0.00 4.00
468 484 5.521906 TGAGAGTTTATCGCTCAAGCTAT 57.478 39.130 0.00 0.00 46.70 2.97
474 490 4.655762 TTATCGCTCAAGCTATGTCAGT 57.344 40.909 0.00 0.00 39.32 3.41
477 493 1.565305 GCTCAAGCTATGTCAGTCCG 58.435 55.000 0.00 0.00 38.21 4.79
490 506 3.752339 GTCCGAGGCGTAACCCGT 61.752 66.667 0.00 0.00 40.58 5.28
501 517 1.180029 GTAACCCGTCACTAGCTCCA 58.820 55.000 0.00 0.00 0.00 3.86
509 525 1.078848 CACTAGCTCCACCACTGCC 60.079 63.158 0.00 0.00 0.00 4.85
556 572 4.135306 AGTGATCAAAGCATGCCATCTAG 58.865 43.478 15.66 0.00 0.00 2.43
558 574 3.881089 TGATCAAAGCATGCCATCTAGTG 59.119 43.478 15.66 2.40 0.00 2.74
559 575 3.632643 TCAAAGCATGCCATCTAGTGA 57.367 42.857 15.66 4.84 0.00 3.41
584 600 2.027385 ACTACCTCCGTCCGGAATTAC 58.973 52.381 5.23 0.00 44.66 1.89
585 601 1.339291 CTACCTCCGTCCGGAATTACC 59.661 57.143 5.23 0.00 44.66 2.85
611 627 7.492524 TGACACTGAAATGGATGTATCTAGAC 58.507 38.462 0.00 0.00 0.00 2.59
613 629 5.403766 CACTGAAATGGATGTATCTAGACGC 59.596 44.000 0.00 0.00 0.00 5.19
616 632 4.937201 AATGGATGTATCTAGACGCACA 57.063 40.909 0.00 0.00 0.00 4.57
617 633 3.990318 TGGATGTATCTAGACGCACAG 57.010 47.619 0.00 0.00 0.00 3.66
618 634 2.623416 TGGATGTATCTAGACGCACAGG 59.377 50.000 0.00 0.00 0.00 4.00
623 702 1.557099 ATCTAGACGCACAGGTGGAA 58.443 50.000 0.00 0.00 0.00 3.53
633 712 3.181465 CGCACAGGTGGAAGGAGTATATT 60.181 47.826 1.10 0.00 0.00 1.28
654 733 2.642154 TTTCCACAAGCCGGTCTTTA 57.358 45.000 1.90 0.00 31.27 1.85
688 767 1.604879 AGCAGCACTCTGACCGAGA 60.605 57.895 0.35 0.00 42.62 4.04
734 823 3.778265 AGAGCAGAAGAAGAGAGGAAGT 58.222 45.455 0.00 0.00 0.00 3.01
768 857 0.326264 ACTGCTCCACTTGATGACCC 59.674 55.000 0.00 0.00 0.00 4.46
952 1083 1.672881 ACACACAACAAGAAGCAGCTC 59.327 47.619 0.00 0.00 0.00 4.09
984 1115 1.067283 CAGAGCCACGAACATCTCACT 60.067 52.381 0.00 0.00 0.00 3.41
992 1123 3.248363 CACGAACATCTCACTGCAAGAAA 59.752 43.478 0.00 0.00 37.43 2.52
993 1124 3.876914 ACGAACATCTCACTGCAAGAAAA 59.123 39.130 0.00 0.00 37.43 2.29
994 1125 4.024556 ACGAACATCTCACTGCAAGAAAAG 60.025 41.667 0.00 0.00 37.43 2.27
995 1126 4.612259 CGAACATCTCACTGCAAGAAAAGG 60.612 45.833 0.00 0.00 37.43 3.11
996 1127 4.090761 ACATCTCACTGCAAGAAAAGGA 57.909 40.909 0.00 0.00 37.43 3.36
997 1128 4.464008 ACATCTCACTGCAAGAAAAGGAA 58.536 39.130 0.00 0.00 37.43 3.36
998 1129 4.889409 ACATCTCACTGCAAGAAAAGGAAA 59.111 37.500 0.00 0.00 37.43 3.13
1045 1201 2.930019 CCACCCTGGTGCTCCTCA 60.930 66.667 10.92 0.00 44.16 3.86
1059 1215 1.153989 CCTCATCGCCTCCCTCCTA 59.846 63.158 0.00 0.00 0.00 2.94
1596 1752 3.080121 AGGGAGGAGGCGCTCAAG 61.080 66.667 7.64 0.00 31.08 3.02
1641 1797 2.841988 ATCTCCCTCCTCAGCGCC 60.842 66.667 2.29 0.00 0.00 6.53
1653 1809 4.711949 AGCGCCACCAGCTGAAGG 62.712 66.667 17.39 17.27 44.22 3.46
1668 1824 1.202855 TGAAGGCTGAAGAAAGCTGCT 60.203 47.619 0.00 0.00 43.06 4.24
1682 1838 6.346096 AGAAAGCTGCTACGAACCAATATAA 58.654 36.000 0.90 0.00 0.00 0.98
1683 1839 6.480320 AGAAAGCTGCTACGAACCAATATAAG 59.520 38.462 0.90 0.00 0.00 1.73
1684 1840 5.277857 AGCTGCTACGAACCAATATAAGT 57.722 39.130 0.00 0.00 0.00 2.24
1686 1842 6.214399 AGCTGCTACGAACCAATATAAGTAC 58.786 40.000 0.00 0.00 0.00 2.73
1687 1843 6.040616 AGCTGCTACGAACCAATATAAGTACT 59.959 38.462 0.00 0.00 0.00 2.73
1688 1844 7.230108 AGCTGCTACGAACCAATATAAGTACTA 59.770 37.037 0.00 0.00 0.00 1.82
1689 1845 8.027771 GCTGCTACGAACCAATATAAGTACTAT 58.972 37.037 0.00 0.00 0.00 2.12
1690 1846 9.343103 CTGCTACGAACCAATATAAGTACTATG 57.657 37.037 0.00 0.00 0.00 2.23
1691 1847 9.070179 TGCTACGAACCAATATAAGTACTATGA 57.930 33.333 0.00 0.00 0.00 2.15
1717 1878 1.212616 CCTACTGCGCACAAGCTATC 58.787 55.000 5.66 0.00 39.10 2.08
1718 1879 1.212616 CTACTGCGCACAAGCTATCC 58.787 55.000 5.66 0.00 39.10 2.59
1898 2059 7.854557 TCTTGAATTCTGGTACTTGATCATG 57.145 36.000 7.05 7.04 0.00 3.07
1928 2089 9.996554 ATTTGGGGACTAAAATAGTTCAAAAAG 57.003 29.630 13.30 0.00 39.59 2.27
2031 2290 9.643735 TTTTTCTAAAACCCATTCACCTACTTA 57.356 29.630 0.00 0.00 0.00 2.24
2073 2334 4.456280 TTGTGTGCAATGTTACCAACAA 57.544 36.364 0.00 0.00 45.86 2.83
2080 2341 6.937465 TGTGCAATGTTACCAACAAGTATCTA 59.063 34.615 0.00 0.00 45.86 1.98
2087 2348 7.833786 TGTTACCAACAAGTATCTATCGTCTT 58.166 34.615 0.00 0.00 38.72 3.01
2088 2349 7.972277 TGTTACCAACAAGTATCTATCGTCTTC 59.028 37.037 0.00 0.00 38.72 2.87
2089 2350 6.777213 ACCAACAAGTATCTATCGTCTTCT 57.223 37.500 0.00 0.00 0.00 2.85
2090 2351 6.797454 ACCAACAAGTATCTATCGTCTTCTC 58.203 40.000 0.00 0.00 0.00 2.87
2091 2352 6.377429 ACCAACAAGTATCTATCGTCTTCTCA 59.623 38.462 0.00 0.00 0.00 3.27
2094 2355 7.254227 ACAAGTATCTATCGTCTTCTCAGAC 57.746 40.000 0.00 0.00 45.54 3.51
2114 2383 2.224670 ACAAAACTATCGGCTTGGTCCA 60.225 45.455 0.00 0.00 0.00 4.02
2133 2402 5.453903 GGTCCAATGATACTAGTGCAGATGT 60.454 44.000 5.39 0.00 0.00 3.06
2141 2410 6.493458 TGATACTAGTGCAGATGTATGCCTAA 59.507 38.462 5.39 0.00 45.91 2.69
2144 2413 6.595682 ACTAGTGCAGATGTATGCCTAAATT 58.404 36.000 0.00 0.00 45.91 1.82
2145 2414 5.762825 AGTGCAGATGTATGCCTAAATTG 57.237 39.130 0.00 0.00 45.91 2.32
2167 2436 1.135083 GGTGATACCTCCGCCGATATG 60.135 57.143 0.00 0.00 34.73 1.78
2171 2440 0.317160 TACCTCCGCCGATATGCTTG 59.683 55.000 0.00 0.00 0.00 4.01
2179 2448 1.643292 CGATATGCTTGGCACGGTG 59.357 57.895 3.15 3.15 43.04 4.94
2201 2506 4.452795 TGGCGATTCAACGAGATTTGTTTA 59.547 37.500 0.00 0.00 35.09 2.01
2206 2511 8.276325 GCGATTCAACGAGATTTGTTTATCTAT 58.724 33.333 0.00 0.00 35.06 1.98
2226 2531 8.594881 ATCTATAAGTTTTTGCGGATACTCTG 57.405 34.615 0.00 0.00 0.00 3.35
2227 2532 6.984474 TCTATAAGTTTTTGCGGATACTCTGG 59.016 38.462 0.00 0.00 0.00 3.86
2228 2533 3.418684 AGTTTTTGCGGATACTCTGGT 57.581 42.857 0.00 0.00 0.00 4.00
2229 2534 3.074412 AGTTTTTGCGGATACTCTGGTG 58.926 45.455 0.00 0.00 0.00 4.17
2230 2535 2.107950 TTTTGCGGATACTCTGGTGG 57.892 50.000 0.00 0.00 0.00 4.61
2231 2536 0.981183 TTTGCGGATACTCTGGTGGT 59.019 50.000 0.00 0.00 0.00 4.16
2232 2537 0.981183 TTGCGGATACTCTGGTGGTT 59.019 50.000 0.00 0.00 0.00 3.67
2233 2538 0.249120 TGCGGATACTCTGGTGGTTG 59.751 55.000 0.00 0.00 0.00 3.77
2234 2539 0.462047 GCGGATACTCTGGTGGTTGG 60.462 60.000 0.00 0.00 0.00 3.77
2235 2540 1.191535 CGGATACTCTGGTGGTTGGA 58.808 55.000 0.00 0.00 0.00 3.53
2236 2541 1.762957 CGGATACTCTGGTGGTTGGAT 59.237 52.381 0.00 0.00 0.00 3.41
2237 2542 2.170607 CGGATACTCTGGTGGTTGGATT 59.829 50.000 0.00 0.00 0.00 3.01
2238 2543 3.370527 CGGATACTCTGGTGGTTGGATTT 60.371 47.826 0.00 0.00 0.00 2.17
2239 2544 4.200092 GGATACTCTGGTGGTTGGATTTC 58.800 47.826 0.00 0.00 0.00 2.17
2240 2545 4.080299 GGATACTCTGGTGGTTGGATTTCT 60.080 45.833 0.00 0.00 0.00 2.52
2241 2546 3.425162 ACTCTGGTGGTTGGATTTCTC 57.575 47.619 0.00 0.00 0.00 2.87
2242 2547 2.711009 ACTCTGGTGGTTGGATTTCTCA 59.289 45.455 0.00 0.00 0.00 3.27
2254 2559 5.666969 TGGATTTCTCAACGTTGTACAAG 57.333 39.130 26.47 16.85 0.00 3.16
2260 2565 5.001237 TCTCAACGTTGTACAAGTTCAGA 57.999 39.130 26.47 15.73 0.00 3.27
2262 2567 5.462068 TCTCAACGTTGTACAAGTTCAGATG 59.538 40.000 26.47 4.88 0.00 2.90
2263 2568 4.025229 TCAACGTTGTACAAGTTCAGATGC 60.025 41.667 26.47 0.00 0.00 3.91
2264 2569 3.462982 ACGTTGTACAAGTTCAGATGCA 58.537 40.909 8.98 0.00 0.00 3.96
2265 2570 4.065088 ACGTTGTACAAGTTCAGATGCAT 58.935 39.130 8.98 0.00 0.00 3.96
2266 2571 4.083855 ACGTTGTACAAGTTCAGATGCATG 60.084 41.667 8.98 0.00 0.00 4.06
2267 2572 4.083855 CGTTGTACAAGTTCAGATGCATGT 60.084 41.667 8.98 0.00 0.00 3.21
2268 2573 5.560760 CGTTGTACAAGTTCAGATGCATGTT 60.561 40.000 8.98 0.00 0.00 2.71
2269 2574 5.611796 TGTACAAGTTCAGATGCATGTTC 57.388 39.130 2.46 0.00 0.00 3.18
2270 2575 3.818961 ACAAGTTCAGATGCATGTTCG 57.181 42.857 2.46 0.00 0.00 3.95
2299 2677 7.426410 AGAATTGTGTGTCATATAGTCGTAGG 58.574 38.462 0.00 0.00 0.00 3.18
2307 2685 9.511272 TGTGTCATATAGTCGTAGGTATTATGT 57.489 33.333 0.00 0.00 0.00 2.29
2318 2696 5.756833 CGTAGGTATTATGTTCCCTTTGTCC 59.243 44.000 0.00 0.00 0.00 4.02
2321 2699 5.491078 AGGTATTATGTTCCCTTTGTCCAGA 59.509 40.000 0.00 0.00 0.00 3.86
2332 2735 4.344390 CCCTTTGTCCAGAGTACCCTATAC 59.656 50.000 0.00 0.00 0.00 1.47
2342 2745 5.711036 CAGAGTACCCTATACCTGGTCATAC 59.289 48.000 0.63 0.00 36.04 2.39
2347 2750 3.326880 CCCTATACCTGGTCATACCCAAC 59.673 52.174 0.63 0.00 37.50 3.77
2348 2751 3.971305 CCTATACCTGGTCATACCCAACA 59.029 47.826 0.63 0.00 37.50 3.33
2359 2762 7.506114 TGGTCATACCCAACATTCTACTAATC 58.494 38.462 0.00 0.00 37.50 1.75
2414 2818 7.013823 ACTTGTATCTATCTGCATATTGCCT 57.986 36.000 0.00 0.00 44.23 4.75
2454 2858 4.533707 TGCCCAATATTTTGTCCCATCAAA 59.466 37.500 0.00 0.00 35.83 2.69
2455 2859 5.191323 TGCCCAATATTTTGTCCCATCAAAT 59.809 36.000 0.00 0.00 37.20 2.32
2505 2909 6.561533 CGTTAATAAGTGGCTTGCATAGTACG 60.562 42.308 0.00 0.00 0.00 3.67
2512 2916 4.094294 GTGGCTTGCATAGTACGAAATCAA 59.906 41.667 0.00 0.00 0.00 2.57
2519 2923 8.710835 TTGCATAGTACGAAATCAAAGTCATA 57.289 30.769 0.00 0.00 0.00 2.15
2572 2976 4.850347 TCAATTGCATGTCACATGAACA 57.150 36.364 22.56 7.98 0.00 3.18
2576 2980 4.587584 TTGCATGTCACATGAACAACAT 57.412 36.364 22.56 0.49 40.17 2.71
2580 2984 6.094061 TGCATGTCACATGAACAACATATTG 58.906 36.000 22.56 0.00 41.98 1.90
2586 2990 7.861872 TGTCACATGAACAACATATTGACAAAG 59.138 33.333 16.73 0.00 46.46 2.77
2593 2997 7.860373 TGAACAACATATTGACAAAGCAACTAC 59.140 33.333 0.00 0.00 39.30 2.73
2596 3000 7.228507 ACAACATATTGACAAAGCAACTACTGA 59.771 33.333 0.00 0.00 39.30 3.41
2604 3008 8.389779 TGACAAAGCAACTACTGATCAAAATA 57.610 30.769 0.00 0.00 0.00 1.40
2647 3051 9.499479 AAATATGCTCTACAGATACAAATGGAG 57.501 33.333 0.00 0.00 27.62 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.581011 ATTTTCTAAATTTTGTAGCTTGGCG 57.419 32.000 0.00 0.00 0.00 5.69
32 33 9.825972 CAAAACTTGCTCTCGAATTTAGATTTA 57.174 29.630 0.00 0.00 0.00 1.40
55 56 6.149807 CCTAAAACTTAGATGGTTACCGCAAA 59.850 38.462 0.00 0.00 0.00 3.68
96 97 5.958380 AGGTGTATGTTGTCTGGAGAAGATA 59.042 40.000 0.00 0.00 37.23 1.98
97 98 4.780021 AGGTGTATGTTGTCTGGAGAAGAT 59.220 41.667 0.00 0.00 37.23 2.40
98 99 4.160329 AGGTGTATGTTGTCTGGAGAAGA 58.840 43.478 0.00 0.00 0.00 2.87
107 108 2.434702 CCTCCCCTAGGTGTATGTTGTC 59.565 54.545 8.29 0.00 40.94 3.18
126 127 1.155390 TCAGGGGTCGAGTCAACCT 59.845 57.895 0.00 0.00 36.97 3.50
136 139 2.987547 TGACCGACGTCAGGGGTC 60.988 66.667 25.54 25.54 44.20 4.46
144 147 1.325338 CGTCTTTGTTTTGACCGACGT 59.675 47.619 0.00 0.00 39.30 4.34
145 148 1.589320 TCGTCTTTGTTTTGACCGACG 59.411 47.619 0.00 0.00 43.78 5.12
151 154 3.202906 CTGTCCCTCGTCTTTGTTTTGA 58.797 45.455 0.00 0.00 0.00 2.69
165 168 1.609501 TGGCTACTTCGCTGTCCCT 60.610 57.895 0.00 0.00 0.00 4.20
167 170 0.320421 TTGTGGCTACTTCGCTGTCC 60.320 55.000 0.64 0.00 0.00 4.02
168 171 1.726853 ATTGTGGCTACTTCGCTGTC 58.273 50.000 0.64 0.00 0.00 3.51
169 172 3.543680 ATATTGTGGCTACTTCGCTGT 57.456 42.857 0.64 0.00 0.00 4.40
170 173 3.871006 TCAATATTGTGGCTACTTCGCTG 59.129 43.478 14.97 0.00 0.00 5.18
171 174 4.122776 CTCAATATTGTGGCTACTTCGCT 58.877 43.478 14.97 0.00 0.00 4.93
172 175 3.248602 CCTCAATATTGTGGCTACTTCGC 59.751 47.826 20.48 0.00 35.36 4.70
173 176 4.442706 ACCTCAATATTGTGGCTACTTCG 58.557 43.478 28.38 9.53 43.70 3.79
174 177 5.467063 GCTACCTCAATATTGTGGCTACTTC 59.533 44.000 28.38 13.19 43.70 3.01
175 178 5.368989 GCTACCTCAATATTGTGGCTACTT 58.631 41.667 28.38 15.75 43.70 2.24
176 179 4.202367 GGCTACCTCAATATTGTGGCTACT 60.202 45.833 28.38 16.04 43.70 2.57
177 180 4.065789 GGCTACCTCAATATTGTGGCTAC 58.934 47.826 28.38 19.55 43.70 3.58
178 181 3.973973 AGGCTACCTCAATATTGTGGCTA 59.026 43.478 28.38 19.96 43.70 3.93
179 182 2.780010 AGGCTACCTCAATATTGTGGCT 59.220 45.455 28.38 19.93 43.70 4.75
180 183 3.214696 AGGCTACCTCAATATTGTGGC 57.785 47.619 28.38 17.07 43.70 5.01
181 184 5.057149 GTGTAGGCTACCTCAATATTGTGG 58.943 45.833 27.33 27.33 45.00 4.17
182 185 5.918608 AGTGTAGGCTACCTCAATATTGTG 58.081 41.667 21.34 12.36 34.61 3.33
183 186 5.221263 CGAGTGTAGGCTACCTCAATATTGT 60.221 44.000 27.59 0.00 34.61 2.71
184 187 5.221263 ACGAGTGTAGGCTACCTCAATATTG 60.221 44.000 27.59 9.29 34.61 1.90
185 188 4.894114 ACGAGTGTAGGCTACCTCAATATT 59.106 41.667 27.59 8.77 34.61 1.28
186 189 4.278669 CACGAGTGTAGGCTACCTCAATAT 59.721 45.833 27.59 15.55 34.61 1.28
187 190 3.630769 CACGAGTGTAGGCTACCTCAATA 59.369 47.826 27.59 9.17 34.61 1.90
188 191 2.427453 CACGAGTGTAGGCTACCTCAAT 59.573 50.000 27.59 18.76 34.61 2.57
189 192 1.816835 CACGAGTGTAGGCTACCTCAA 59.183 52.381 27.59 10.05 34.61 3.02
190 193 1.271762 ACACGAGTGTAGGCTACCTCA 60.272 52.381 27.59 10.39 42.90 3.86
191 194 1.461559 ACACGAGTGTAGGCTACCTC 58.538 55.000 21.34 22.20 42.90 3.85
192 195 2.795231 TACACGAGTGTAGGCTACCT 57.205 50.000 21.34 16.93 44.42 3.08
193 196 2.751806 ACTTACACGAGTGTAGGCTACC 59.248 50.000 21.34 12.69 45.57 3.18
194 197 3.438087 TCACTTACACGAGTGTAGGCTAC 59.562 47.826 20.58 17.76 45.57 3.58
195 198 3.678289 TCACTTACACGAGTGTAGGCTA 58.322 45.455 20.58 9.75 45.57 3.93
201 204 4.439057 ACAACATTCACTTACACGAGTGT 58.561 39.130 13.68 13.68 45.64 3.55
217 220 1.308069 GCATGTGCCGAGGACAACAT 61.308 55.000 2.70 0.00 34.31 2.71
218 221 1.965930 GCATGTGCCGAGGACAACA 60.966 57.895 2.70 0.00 34.31 3.33
219 222 1.514678 TTGCATGTGCCGAGGACAAC 61.515 55.000 2.07 0.30 41.18 3.32
222 225 1.672356 ACTTGCATGTGCCGAGGAC 60.672 57.895 4.14 0.00 41.18 3.85
238 241 1.600636 CACGTGCATGGGGTTCACT 60.601 57.895 11.36 0.00 0.00 3.41
264 267 6.182627 ACTTTCAATGCCAAGATGATCACTA 58.817 36.000 0.00 0.00 0.00 2.74
266 269 5.125097 AGACTTTCAATGCCAAGATGATCAC 59.875 40.000 0.00 0.00 0.00 3.06
288 291 5.376625 ACATAAACAAAGGCAGAGTTGAGA 58.623 37.500 0.00 0.00 0.00 3.27
300 303 9.769093 CTTCTAATTACGGGAACATAAACAAAG 57.231 33.333 0.00 0.00 0.00 2.77
310 313 5.702209 TGAAACACCTTCTAATTACGGGAAC 59.298 40.000 0.00 0.00 34.86 3.62
314 317 8.911662 CAAAATTGAAACACCTTCTAATTACGG 58.088 33.333 0.00 0.00 34.86 4.02
373 377 0.957395 CTGACCGCCAGCAGAATGTT 60.957 55.000 0.00 0.00 39.31 2.71
383 387 4.680237 CTTCGCCACTGACCGCCA 62.680 66.667 0.00 0.00 0.00 5.69
384 388 2.292794 TATCTTCGCCACTGACCGCC 62.293 60.000 0.00 0.00 0.00 6.13
385 389 0.872021 CTATCTTCGCCACTGACCGC 60.872 60.000 0.00 0.00 0.00 5.68
386 390 0.249073 CCTATCTTCGCCACTGACCG 60.249 60.000 0.00 0.00 0.00 4.79
387 391 0.530870 GCCTATCTTCGCCACTGACC 60.531 60.000 0.00 0.00 0.00 4.02
388 392 0.530870 GGCCTATCTTCGCCACTGAC 60.531 60.000 0.00 0.00 45.01 3.51
389 393 1.823295 GGCCTATCTTCGCCACTGA 59.177 57.895 0.00 0.00 45.01 3.41
390 394 4.445699 GGCCTATCTTCGCCACTG 57.554 61.111 0.00 0.00 45.01 3.66
394 398 3.623510 GCAATAATAGGCCTATCTTCGCC 59.376 47.826 25.60 9.22 46.09 5.54
395 399 4.253685 TGCAATAATAGGCCTATCTTCGC 58.746 43.478 25.60 23.13 0.00 4.70
396 400 6.992063 ATTGCAATAATAGGCCTATCTTCG 57.008 37.500 25.60 15.17 0.00 3.79
397 401 8.796475 TGAAATTGCAATAATAGGCCTATCTTC 58.204 33.333 25.60 15.16 0.00 2.87
398 402 8.710749 TGAAATTGCAATAATAGGCCTATCTT 57.289 30.769 25.60 18.14 0.00 2.40
399 403 8.890410 ATGAAATTGCAATAATAGGCCTATCT 57.110 30.769 25.60 16.99 0.00 1.98
400 404 8.964772 AGATGAAATTGCAATAATAGGCCTATC 58.035 33.333 25.60 13.06 0.00 2.08
401 405 8.890410 AGATGAAATTGCAATAATAGGCCTAT 57.110 30.769 20.16 20.16 0.00 2.57
439 455 6.834959 TGAGCGATAAACTCTCATGATTTC 57.165 37.500 0.00 0.00 35.74 2.17
468 484 1.582968 GTTACGCCTCGGACTGACA 59.417 57.895 0.00 0.00 0.00 3.58
490 506 1.544825 GGCAGTGGTGGAGCTAGTGA 61.545 60.000 0.00 0.00 31.48 3.41
501 517 3.311110 ATGACCGTCGGCAGTGGT 61.311 61.111 12.28 3.55 39.12 4.16
509 525 1.729517 TGTTATTGCACATGACCGTCG 59.270 47.619 0.00 0.00 0.00 5.12
539 555 3.632643 TCACTAGATGGCATGCTTTGA 57.367 42.857 18.92 6.93 0.00 2.69
556 572 2.805099 CGGACGGAGGTAGTAGTATCAC 59.195 54.545 0.00 0.00 0.00 3.06
558 574 2.037772 TCCGGACGGAGGTAGTAGTATC 59.962 54.545 9.76 0.00 39.76 2.24
559 575 2.050144 TCCGGACGGAGGTAGTAGTAT 58.950 52.381 9.76 0.00 39.76 2.12
584 600 5.678583 AGATACATCCATTTCAGTGTCAGG 58.321 41.667 0.00 0.00 0.00 3.86
585 601 7.651304 GTCTAGATACATCCATTTCAGTGTCAG 59.349 40.741 0.00 0.00 0.00 3.51
590 606 5.069119 TGCGTCTAGATACATCCATTTCAGT 59.931 40.000 0.00 0.00 0.00 3.41
611 627 0.537188 ATACTCCTTCCACCTGTGCG 59.463 55.000 0.00 0.00 0.00 5.34
633 712 1.770294 AAGACCGGCTTGTGGAAAAA 58.230 45.000 0.00 0.00 34.93 1.94
688 767 4.755123 CACCTCCATTTTTCTGTTACGACT 59.245 41.667 0.00 0.00 0.00 4.18
696 785 3.822735 TGCTCTTCACCTCCATTTTTCTG 59.177 43.478 0.00 0.00 0.00 3.02
697 786 4.077822 CTGCTCTTCACCTCCATTTTTCT 58.922 43.478 0.00 0.00 0.00 2.52
698 787 4.074970 TCTGCTCTTCACCTCCATTTTTC 58.925 43.478 0.00 0.00 0.00 2.29
734 823 2.038952 GAGCAGTCCACCATGCCATATA 59.961 50.000 0.00 0.00 43.60 0.86
760 849 2.461300 TGTTTTGTTGGGGGTCATCA 57.539 45.000 0.00 0.00 0.00 3.07
761 850 5.675684 ATTATGTTTTGTTGGGGGTCATC 57.324 39.130 0.00 0.00 0.00 2.92
762 851 6.156083 CCTAATTATGTTTTGTTGGGGGTCAT 59.844 38.462 0.00 0.00 0.00 3.06
768 857 6.279513 TCAGCCTAATTATGTTTTGTTGGG 57.720 37.500 0.00 0.00 0.00 4.12
984 1115 3.129871 CGCCATTTTTCCTTTTCTTGCA 58.870 40.909 0.00 0.00 0.00 4.08
992 1123 0.755686 TGTTGGCGCCATTTTTCCTT 59.244 45.000 33.25 0.00 0.00 3.36
993 1124 0.755686 TTGTTGGCGCCATTTTTCCT 59.244 45.000 33.25 0.00 0.00 3.36
994 1125 1.464219 CATTGTTGGCGCCATTTTTCC 59.536 47.619 33.25 14.24 0.00 3.13
995 1126 1.464219 CCATTGTTGGCGCCATTTTTC 59.536 47.619 33.25 18.03 35.85 2.29
996 1127 1.521580 CCATTGTTGGCGCCATTTTT 58.478 45.000 33.25 13.49 35.85 1.94
997 1128 3.230115 CCATTGTTGGCGCCATTTT 57.770 47.368 33.25 13.08 35.85 1.82
1506 1662 2.126071 CACACCTGCGGGTACTCG 60.126 66.667 19.20 11.78 45.41 4.18
1653 1809 1.714794 TCGTAGCAGCTTTCTTCAGC 58.285 50.000 0.00 0.00 40.44 4.26
1654 1810 2.413453 GGTTCGTAGCAGCTTTCTTCAG 59.587 50.000 0.00 0.00 0.00 3.02
1655 1811 2.224185 TGGTTCGTAGCAGCTTTCTTCA 60.224 45.455 0.00 0.00 0.00 3.02
1656 1812 2.413837 TGGTTCGTAGCAGCTTTCTTC 58.586 47.619 0.00 0.00 0.00 2.87
1657 1813 2.543777 TGGTTCGTAGCAGCTTTCTT 57.456 45.000 0.00 0.00 0.00 2.52
1658 1814 2.543777 TTGGTTCGTAGCAGCTTTCT 57.456 45.000 0.00 0.00 32.55 2.52
1659 1815 6.258068 ACTTATATTGGTTCGTAGCAGCTTTC 59.742 38.462 0.00 0.00 32.55 2.62
1668 1824 8.506437 CGGTCATAGTACTTATATTGGTTCGTA 58.494 37.037 0.00 0.00 0.00 3.43
1682 1838 3.821600 CAGTAGGCATCGGTCATAGTACT 59.178 47.826 0.00 0.00 0.00 2.73
1683 1839 3.612004 GCAGTAGGCATCGGTCATAGTAC 60.612 52.174 0.00 0.00 43.97 2.73
1684 1840 2.557056 GCAGTAGGCATCGGTCATAGTA 59.443 50.000 0.00 0.00 43.97 1.82
1686 1842 1.667177 CGCAGTAGGCATCGGTCATAG 60.667 57.143 0.00 0.00 45.17 2.23
1687 1843 0.313987 CGCAGTAGGCATCGGTCATA 59.686 55.000 0.00 0.00 45.17 2.15
1688 1844 1.068083 CGCAGTAGGCATCGGTCAT 59.932 57.895 0.00 0.00 45.17 3.06
1689 1845 2.494445 CGCAGTAGGCATCGGTCA 59.506 61.111 0.00 0.00 45.17 4.02
1690 1846 2.962253 GCGCAGTAGGCATCGGTC 60.962 66.667 0.30 0.00 45.17 4.79
1691 1847 3.770040 TGCGCAGTAGGCATCGGT 61.770 61.111 5.66 0.00 45.17 4.69
1717 1878 9.122779 TGGTTACATCCTTAATTAATTTACGGG 57.877 33.333 5.91 4.42 31.60 5.28
1718 1879 9.940166 GTGGTTACATCCTTAATTAATTTACGG 57.060 33.333 5.91 5.08 31.87 4.02
1875 2036 7.621428 ACATGATCAAGTACCAGAATTCAAG 57.379 36.000 8.44 0.47 0.00 3.02
2073 2334 7.867305 TTTGTCTGAGAAGACGATAGATACT 57.133 36.000 0.00 0.00 41.43 2.12
2080 2341 6.030849 CGATAGTTTTGTCTGAGAAGACGAT 58.969 40.000 4.13 4.13 41.43 3.73
2087 2348 4.245660 CAAGCCGATAGTTTTGTCTGAGA 58.754 43.478 0.00 0.00 0.00 3.27
2088 2349 3.372206 CCAAGCCGATAGTTTTGTCTGAG 59.628 47.826 0.00 0.00 0.00 3.35
2089 2350 3.244422 ACCAAGCCGATAGTTTTGTCTGA 60.244 43.478 0.00 0.00 0.00 3.27
2090 2351 3.074412 ACCAAGCCGATAGTTTTGTCTG 58.926 45.455 0.00 0.00 0.00 3.51
2091 2352 3.335579 GACCAAGCCGATAGTTTTGTCT 58.664 45.455 0.00 0.00 0.00 3.41
2094 2355 2.432444 TGGACCAAGCCGATAGTTTTG 58.568 47.619 0.00 0.00 0.00 2.44
2103 2372 2.332063 AGTATCATTGGACCAAGCCG 57.668 50.000 13.43 4.02 0.00 5.52
2114 2383 6.013898 AGGCATACATCTGCACTAGTATCATT 60.014 38.462 0.00 0.00 44.12 2.57
2133 2402 4.667858 AGGTATCACCCCAATTTAGGCATA 59.332 41.667 0.00 0.00 39.75 3.14
2141 2410 0.182775 GCGGAGGTATCACCCCAATT 59.817 55.000 0.00 0.00 39.75 2.32
2144 2413 2.766651 GGCGGAGGTATCACCCCA 60.767 66.667 0.00 0.00 39.75 4.96
2145 2414 3.925090 CGGCGGAGGTATCACCCC 61.925 72.222 0.00 0.00 39.75 4.95
2171 2440 3.053291 TTGAATCGCCACCGTGCC 61.053 61.111 0.00 0.00 35.54 5.01
2173 2442 1.955529 CTCGTTGAATCGCCACCGTG 61.956 60.000 0.00 0.00 35.54 4.94
2174 2443 1.736645 CTCGTTGAATCGCCACCGT 60.737 57.895 0.00 0.00 35.54 4.83
2175 2444 0.806102 ATCTCGTTGAATCGCCACCG 60.806 55.000 0.00 0.00 0.00 4.94
2179 2448 3.471495 AACAAATCTCGTTGAATCGCC 57.529 42.857 0.00 0.00 32.59 5.54
2201 2506 7.657761 CCAGAGTATCCGCAAAAACTTATAGAT 59.342 37.037 0.00 0.00 33.66 1.98
2206 2511 4.693566 CACCAGAGTATCCGCAAAAACTTA 59.306 41.667 0.00 0.00 33.66 2.24
2212 2517 0.981183 ACCACCAGAGTATCCGCAAA 59.019 50.000 0.00 0.00 33.66 3.68
2213 2518 0.981183 AACCACCAGAGTATCCGCAA 59.019 50.000 0.00 0.00 33.66 4.85
2214 2519 0.249120 CAACCACCAGAGTATCCGCA 59.751 55.000 0.00 0.00 33.66 5.69
2215 2520 0.462047 CCAACCACCAGAGTATCCGC 60.462 60.000 0.00 0.00 33.66 5.54
2216 2521 1.191535 TCCAACCACCAGAGTATCCG 58.808 55.000 0.00 0.00 33.66 4.18
2217 2522 3.933861 AATCCAACCACCAGAGTATCC 57.066 47.619 0.00 0.00 33.66 2.59
2218 2523 5.104259 AGAAATCCAACCACCAGAGTATC 57.896 43.478 0.00 0.00 0.00 2.24
2219 2524 4.536090 TGAGAAATCCAACCACCAGAGTAT 59.464 41.667 0.00 0.00 0.00 2.12
2220 2525 3.907474 TGAGAAATCCAACCACCAGAGTA 59.093 43.478 0.00 0.00 0.00 2.59
2221 2526 2.711009 TGAGAAATCCAACCACCAGAGT 59.289 45.455 0.00 0.00 0.00 3.24
2222 2527 3.423539 TGAGAAATCCAACCACCAGAG 57.576 47.619 0.00 0.00 0.00 3.35
2223 2528 3.486383 GTTGAGAAATCCAACCACCAGA 58.514 45.455 0.00 0.00 38.28 3.86
2224 2529 2.226437 CGTTGAGAAATCCAACCACCAG 59.774 50.000 0.00 0.00 40.40 4.00
2225 2530 2.226330 CGTTGAGAAATCCAACCACCA 58.774 47.619 0.00 0.00 40.40 4.17
2226 2531 2.227194 ACGTTGAGAAATCCAACCACC 58.773 47.619 0.00 0.00 40.40 4.61
2227 2532 3.066203 ACAACGTTGAGAAATCCAACCAC 59.934 43.478 33.66 0.00 40.40 4.16
2228 2533 3.283751 ACAACGTTGAGAAATCCAACCA 58.716 40.909 33.66 0.00 40.40 3.67
2229 2534 3.982576 ACAACGTTGAGAAATCCAACC 57.017 42.857 33.66 0.00 40.40 3.77
2230 2535 5.412526 TGTACAACGTTGAGAAATCCAAC 57.587 39.130 33.66 15.71 40.19 3.77
2231 2536 5.587043 ACTTGTACAACGTTGAGAAATCCAA 59.413 36.000 33.66 20.03 0.00 3.53
2232 2537 5.120399 ACTTGTACAACGTTGAGAAATCCA 58.880 37.500 33.66 15.03 0.00 3.41
2233 2538 5.668558 ACTTGTACAACGTTGAGAAATCC 57.331 39.130 33.66 12.89 0.00 3.01
2234 2539 6.711579 TGAACTTGTACAACGTTGAGAAATC 58.288 36.000 33.66 20.22 0.00 2.17
2235 2540 6.537301 TCTGAACTTGTACAACGTTGAGAAAT 59.463 34.615 33.66 14.10 30.06 2.17
2236 2541 5.870433 TCTGAACTTGTACAACGTTGAGAAA 59.130 36.000 33.66 20.78 30.06 2.52
2237 2542 5.412640 TCTGAACTTGTACAACGTTGAGAA 58.587 37.500 33.66 19.26 30.06 2.87
2238 2543 5.001237 TCTGAACTTGTACAACGTTGAGA 57.999 39.130 33.66 22.91 30.41 3.27
2239 2544 5.670097 CATCTGAACTTGTACAACGTTGAG 58.330 41.667 33.66 21.89 0.00 3.02
2240 2545 4.025229 GCATCTGAACTTGTACAACGTTGA 60.025 41.667 33.66 15.02 0.00 3.18
2241 2546 4.211389 GCATCTGAACTTGTACAACGTTG 58.789 43.478 26.20 26.20 0.00 4.10
2242 2547 3.874543 TGCATCTGAACTTGTACAACGTT 59.125 39.130 17.67 17.67 0.00 3.99
2254 2559 0.804364 TGCCGAACATGCATCTGAAC 59.196 50.000 0.00 0.00 32.85 3.18
2260 2565 2.231964 ACAATTCTTGCCGAACATGCAT 59.768 40.909 0.00 0.00 38.76 3.96
2262 2567 1.987770 CACAATTCTTGCCGAACATGC 59.012 47.619 0.00 0.00 33.72 4.06
2263 2568 2.981805 CACACAATTCTTGCCGAACATG 59.018 45.455 0.00 0.00 33.72 3.21
2264 2569 2.622942 ACACACAATTCTTGCCGAACAT 59.377 40.909 0.00 0.00 33.72 2.71
2265 2570 2.020720 ACACACAATTCTTGCCGAACA 58.979 42.857 0.00 0.00 33.72 3.18
2266 2571 2.032799 TGACACACAATTCTTGCCGAAC 59.967 45.455 0.00 0.00 33.72 3.95
2267 2572 2.293170 TGACACACAATTCTTGCCGAA 58.707 42.857 0.00 0.00 35.78 4.30
2268 2573 1.960417 TGACACACAATTCTTGCCGA 58.040 45.000 0.00 0.00 0.00 5.54
2269 2574 2.995466 ATGACACACAATTCTTGCCG 57.005 45.000 0.00 0.00 0.00 5.69
2270 2575 6.510157 CGACTATATGACACACAATTCTTGCC 60.510 42.308 0.00 0.00 0.00 4.52
2280 2658 9.770503 CATAATACCTACGACTATATGACACAC 57.229 37.037 0.00 0.00 0.00 3.82
2299 2677 6.415573 ACTCTGGACAAAGGGAACATAATAC 58.584 40.000 0.00 0.00 0.00 1.89
2307 2685 1.982958 GGGTACTCTGGACAAAGGGAA 59.017 52.381 0.00 0.00 0.00 3.97
2308 2686 1.151413 AGGGTACTCTGGACAAAGGGA 59.849 52.381 0.00 0.00 0.00 4.20
2318 2696 4.180377 TGACCAGGTATAGGGTACTCTG 57.820 50.000 5.20 0.00 37.57 3.35
2321 2699 4.202760 GGGTATGACCAGGTATAGGGTACT 60.203 50.000 0.00 0.00 41.02 2.73
2332 2735 3.652057 AGAATGTTGGGTATGACCAGG 57.348 47.619 0.00 0.00 42.47 4.45
2454 2858 9.197306 GGGGTAAATATTGGTTAAAGACTTGAT 57.803 33.333 0.00 0.00 0.00 2.57
2455 2859 7.337436 CGGGGTAAATATTGGTTAAAGACTTGA 59.663 37.037 0.00 0.00 0.00 3.02
2527 2931 8.352201 TGATGTCACTAGATTTGTTTCCAAAAG 58.648 33.333 0.00 0.00 43.43 2.27
2530 2934 7.815840 TTGATGTCACTAGATTTGTTTCCAA 57.184 32.000 0.00 0.00 0.00 3.53
2531 2935 8.298854 CAATTGATGTCACTAGATTTGTTTCCA 58.701 33.333 0.00 0.00 0.00 3.53
2572 2976 7.744087 TCAGTAGTTGCTTTGTCAATATGTT 57.256 32.000 0.00 0.00 0.00 2.71
2576 2980 7.977789 TTGATCAGTAGTTGCTTTGTCAATA 57.022 32.000 0.00 0.00 0.00 1.90
2580 2984 9.846248 AATATTTTGATCAGTAGTTGCTTTGTC 57.154 29.630 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.