Multiple sequence alignment - TraesCS7A01G323000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G323000 chr7A 100.000 2942 0 0 1 2942 469356131 469359072 0.000000e+00 5433
1 TraesCS7A01G323000 chr7B 94.989 2694 49 23 285 2942 423548697 423551340 0.000000e+00 4148
2 TraesCS7A01G323000 chr7D 94.061 2694 50 24 285 2942 409162308 409164927 0.000000e+00 3988
3 TraesCS7A01G323000 chr7D 94.845 291 14 1 1 290 611771180 611771470 1.240000e-123 453
4 TraesCS7A01G323000 chr7D 94.810 289 14 1 1 288 401096820 401097108 1.610000e-122 449
5 TraesCS7A01G323000 chr7D 94.464 289 15 1 1 288 32856987 32857275 7.480000e-121 444
6 TraesCS7A01G323000 chr4D 94.483 290 15 1 1 289 261258686 261258397 2.080000e-121 446
7 TraesCS7A01G323000 chr4D 94.077 287 16 1 1 286 39230684 39230970 4.500000e-118 435
8 TraesCS7A01G323000 chr1D 94.774 287 14 1 1 286 258335714 258336000 2.080000e-121 446
9 TraesCS7A01G323000 chr5D 94.118 289 15 2 1 288 311614383 311614670 3.480000e-119 438
10 TraesCS7A01G323000 chr5D 94.118 289 14 3 1 288 542610246 542610532 1.250000e-118 436
11 TraesCS7A01G323000 chrUn 94.097 288 15 2 1 286 126957918 126958205 1.250000e-118 436


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G323000 chr7A 469356131 469359072 2941 False 5433 5433 100.000 1 2942 1 chr7A.!!$F1 2941
1 TraesCS7A01G323000 chr7B 423548697 423551340 2643 False 4148 4148 94.989 285 2942 1 chr7B.!!$F1 2657
2 TraesCS7A01G323000 chr7D 409162308 409164927 2619 False 3988 3988 94.061 285 2942 1 chr7D.!!$F3 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.032815 GGCCCGCAAAAGCTGTTTTA 59.967 50.0 0.00 0.00 33.93 1.52 F
230 231 0.425656 CGCAAAAGCTGTTTTACGCG 59.574 50.0 3.53 3.53 41.38 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1060 1.395826 GGCTACCGAGGCTCATGTCT 61.396 60.0 15.95 0.0 44.83 3.41 R
1974 2011 2.319025 TCCATCGCCTATATGGGACA 57.681 50.0 9.73 0.0 43.52 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 9.743057 TGAATAATTCAGTTTGTTTTCGATTGT 57.257 25.926 0.00 0.00 34.08 2.71
51 52 9.743057 ATAATTCAGTTTGTTTTCGATTGTTGA 57.257 25.926 0.00 0.00 0.00 3.18
52 53 8.472683 AATTCAGTTTGTTTTCGATTGTTGAA 57.527 26.923 0.00 0.00 0.00 2.69
53 54 8.647143 ATTCAGTTTGTTTTCGATTGTTGAAT 57.353 26.923 0.00 0.00 0.00 2.57
54 55 8.472683 TTCAGTTTGTTTTCGATTGTTGAATT 57.527 26.923 0.00 0.00 0.00 2.17
55 56 9.574458 TTCAGTTTGTTTTCGATTGTTGAATTA 57.426 25.926 0.00 0.00 0.00 1.40
56 57 9.743057 TCAGTTTGTTTTCGATTGTTGAATTAT 57.257 25.926 0.00 0.00 0.00 1.28
57 58 9.782028 CAGTTTGTTTTCGATTGTTGAATTATG 57.218 29.630 0.00 0.00 0.00 1.90
58 59 9.528018 AGTTTGTTTTCGATTGTTGAATTATGT 57.472 25.926 0.00 0.00 0.00 2.29
61 62 8.291888 TGTTTTCGATTGTTGAATTATGTTGG 57.708 30.769 0.00 0.00 0.00 3.77
62 63 8.138074 TGTTTTCGATTGTTGAATTATGTTGGA 58.862 29.630 0.00 0.00 0.00 3.53
63 64 9.139174 GTTTTCGATTGTTGAATTATGTTGGAT 57.861 29.630 0.00 0.00 0.00 3.41
64 65 9.703892 TTTTCGATTGTTGAATTATGTTGGATT 57.296 25.926 0.00 0.00 0.00 3.01
65 66 9.703892 TTTCGATTGTTGAATTATGTTGGATTT 57.296 25.926 0.00 0.00 0.00 2.17
66 67 8.686397 TCGATTGTTGAATTATGTTGGATTTG 57.314 30.769 0.00 0.00 0.00 2.32
67 68 8.518702 TCGATTGTTGAATTATGTTGGATTTGA 58.481 29.630 0.00 0.00 0.00 2.69
68 69 8.800972 CGATTGTTGAATTATGTTGGATTTGAG 58.199 33.333 0.00 0.00 0.00 3.02
69 70 9.859427 GATTGTTGAATTATGTTGGATTTGAGA 57.141 29.630 0.00 0.00 0.00 3.27
74 75 8.706492 TGAATTATGTTGGATTTGAGATTTGC 57.294 30.769 0.00 0.00 0.00 3.68
75 76 7.488792 TGAATTATGTTGGATTTGAGATTTGCG 59.511 33.333 0.00 0.00 0.00 4.85
76 77 3.574284 TGTTGGATTTGAGATTTGCGG 57.426 42.857 0.00 0.00 0.00 5.69
77 78 2.230992 TGTTGGATTTGAGATTTGCGGG 59.769 45.455 0.00 0.00 0.00 6.13
78 79 0.817013 TGGATTTGAGATTTGCGGGC 59.183 50.000 0.00 0.00 0.00 6.13
79 80 1.106285 GGATTTGAGATTTGCGGGCT 58.894 50.000 0.00 0.00 0.00 5.19
80 81 1.202336 GGATTTGAGATTTGCGGGCTG 60.202 52.381 0.00 0.00 0.00 4.85
81 82 1.745087 GATTTGAGATTTGCGGGCTGA 59.255 47.619 0.00 0.00 0.00 4.26
82 83 1.838112 TTTGAGATTTGCGGGCTGAT 58.162 45.000 0.00 0.00 0.00 2.90
83 84 1.097232 TTGAGATTTGCGGGCTGATG 58.903 50.000 0.00 0.00 0.00 3.07
84 85 0.252761 TGAGATTTGCGGGCTGATGA 59.747 50.000 0.00 0.00 0.00 2.92
85 86 1.134007 TGAGATTTGCGGGCTGATGAT 60.134 47.619 0.00 0.00 0.00 2.45
86 87 1.952296 GAGATTTGCGGGCTGATGATT 59.048 47.619 0.00 0.00 0.00 2.57
87 88 2.360165 GAGATTTGCGGGCTGATGATTT 59.640 45.455 0.00 0.00 0.00 2.17
88 89 2.100252 AGATTTGCGGGCTGATGATTTG 59.900 45.455 0.00 0.00 0.00 2.32
89 90 0.108709 TTTGCGGGCTGATGATTTGC 60.109 50.000 0.00 0.00 0.00 3.68
90 91 2.025156 GCGGGCTGATGATTTGCG 59.975 61.111 0.00 0.00 0.00 4.85
91 92 2.717485 CGGGCTGATGATTTGCGG 59.283 61.111 0.00 0.00 0.00 5.69
92 93 2.837883 CGGGCTGATGATTTGCGGG 61.838 63.158 0.00 0.00 0.00 6.13
93 94 2.492773 GGGCTGATGATTTGCGGGG 61.493 63.158 0.00 0.00 0.00 5.73
94 95 1.453745 GGCTGATGATTTGCGGGGA 60.454 57.895 0.00 0.00 0.00 4.81
95 96 0.825010 GGCTGATGATTTGCGGGGAT 60.825 55.000 0.00 0.00 0.00 3.85
96 97 0.313043 GCTGATGATTTGCGGGGATG 59.687 55.000 0.00 0.00 0.00 3.51
97 98 0.313043 CTGATGATTTGCGGGGATGC 59.687 55.000 0.00 0.00 0.00 3.91
98 99 0.395448 TGATGATTTGCGGGGATGCA 60.395 50.000 0.00 0.00 44.61 3.96
109 110 4.842091 GGATGCAGCGGCGCAAAG 62.842 66.667 35.02 23.23 46.87 2.77
110 111 3.803082 GATGCAGCGGCGCAAAGA 61.803 61.111 35.02 14.97 46.87 2.52
111 112 3.729906 GATGCAGCGGCGCAAAGAG 62.730 63.158 35.02 18.10 46.87 2.85
114 115 4.456253 CAGCGGCGCAAAGAGCAG 62.456 66.667 35.02 8.79 46.13 4.24
115 116 4.687215 AGCGGCGCAAAGAGCAGA 62.687 61.111 35.02 0.00 46.13 4.26
116 117 3.726517 GCGGCGCAAAGAGCAGAA 61.727 61.111 29.21 0.00 46.13 3.02
117 118 2.174349 CGGCGCAAAGAGCAGAAC 59.826 61.111 10.83 0.00 46.13 3.01
118 119 2.320587 CGGCGCAAAGAGCAGAACT 61.321 57.895 10.83 0.00 46.13 3.01
119 120 1.499502 GGCGCAAAGAGCAGAACTC 59.500 57.895 10.83 0.00 46.13 3.01
127 128 2.599216 GAGCAGAACTCGCATAGCC 58.401 57.895 0.00 0.00 35.18 3.93
128 129 1.211818 GAGCAGAACTCGCATAGCCG 61.212 60.000 0.00 0.00 35.18 5.52
129 130 1.226974 GCAGAACTCGCATAGCCGA 60.227 57.895 0.00 0.00 35.68 5.54
130 131 1.483424 GCAGAACTCGCATAGCCGAC 61.483 60.000 0.00 0.00 33.12 4.79
131 132 0.872021 CAGAACTCGCATAGCCGACC 60.872 60.000 0.00 0.00 33.12 4.79
132 133 1.591863 GAACTCGCATAGCCGACCC 60.592 63.158 0.00 0.00 33.12 4.46
133 134 3.426117 AACTCGCATAGCCGACCCG 62.426 63.158 0.00 0.00 33.12 5.28
134 135 3.900892 CTCGCATAGCCGACCCGT 61.901 66.667 0.00 0.00 33.12 5.28
135 136 2.516695 TCGCATAGCCGACCCGTA 60.517 61.111 0.00 0.00 31.36 4.02
136 137 2.050351 CGCATAGCCGACCCGTAG 60.050 66.667 0.00 0.00 0.00 3.51
137 138 2.549198 CGCATAGCCGACCCGTAGA 61.549 63.158 0.00 0.00 0.00 2.59
138 139 1.737816 GCATAGCCGACCCGTAGAA 59.262 57.895 0.00 0.00 0.00 2.10
139 140 0.103572 GCATAGCCGACCCGTAGAAA 59.896 55.000 0.00 0.00 0.00 2.52
140 141 1.472026 GCATAGCCGACCCGTAGAAAA 60.472 52.381 0.00 0.00 0.00 2.29
141 142 2.470821 CATAGCCGACCCGTAGAAAAG 58.529 52.381 0.00 0.00 0.00 2.27
142 143 0.174162 TAGCCGACCCGTAGAAAAGC 59.826 55.000 0.00 0.00 0.00 3.51
143 144 1.375013 GCCGACCCGTAGAAAAGCA 60.375 57.895 0.00 0.00 0.00 3.91
144 145 0.743345 GCCGACCCGTAGAAAAGCAT 60.743 55.000 0.00 0.00 0.00 3.79
145 146 1.472026 GCCGACCCGTAGAAAAGCATA 60.472 52.381 0.00 0.00 0.00 3.14
146 147 2.805657 GCCGACCCGTAGAAAAGCATAT 60.806 50.000 0.00 0.00 0.00 1.78
147 148 3.463944 CCGACCCGTAGAAAAGCATATT 58.536 45.455 0.00 0.00 0.00 1.28
148 149 3.493503 CCGACCCGTAGAAAAGCATATTC 59.506 47.826 0.00 0.00 0.00 1.75
149 150 3.493503 CGACCCGTAGAAAAGCATATTCC 59.506 47.826 0.00 0.00 0.00 3.01
150 151 4.448210 GACCCGTAGAAAAGCATATTCCA 58.552 43.478 0.00 0.00 0.00 3.53
151 152 4.196971 ACCCGTAGAAAAGCATATTCCAC 58.803 43.478 0.00 0.00 0.00 4.02
152 153 3.247648 CCCGTAGAAAAGCATATTCCACG 59.752 47.826 9.07 9.07 40.15 4.94
153 154 4.116961 CCGTAGAAAAGCATATTCCACGA 58.883 43.478 14.85 0.00 42.04 4.35
154 155 4.569162 CCGTAGAAAAGCATATTCCACGAA 59.431 41.667 14.85 0.00 42.04 3.85
155 156 5.236478 CCGTAGAAAAGCATATTCCACGAAT 59.764 40.000 14.85 0.00 42.04 3.34
156 157 6.422701 CCGTAGAAAAGCATATTCCACGAATA 59.577 38.462 14.85 0.00 42.04 1.75
157 158 7.117812 CCGTAGAAAAGCATATTCCACGAATAT 59.882 37.037 14.85 1.81 42.04 1.28
158 159 9.135843 CGTAGAAAAGCATATTCCACGAATATA 57.864 33.333 10.04 0.00 42.04 0.86
184 185 2.124860 CGGATCCGTTTGGGGGTC 60.125 66.667 26.35 0.00 36.01 4.46
185 186 2.666098 CGGATCCGTTTGGGGGTCT 61.666 63.158 26.35 0.00 36.01 3.85
186 187 1.077716 GGATCCGTTTGGGGGTCTG 60.078 63.158 0.00 0.00 36.01 3.51
187 188 1.749258 GATCCGTTTGGGGGTCTGC 60.749 63.158 0.00 0.00 36.01 4.26
188 189 2.478335 GATCCGTTTGGGGGTCTGCA 62.478 60.000 0.00 0.00 36.01 4.41
189 190 1.863155 ATCCGTTTGGGGGTCTGCAT 61.863 55.000 0.00 0.00 36.01 3.96
190 191 2.046285 CCGTTTGGGGGTCTGCATC 61.046 63.158 0.00 0.00 0.00 3.91
191 192 1.002134 CGTTTGGGGGTCTGCATCT 60.002 57.895 0.00 0.00 0.00 2.90
192 193 1.308069 CGTTTGGGGGTCTGCATCTG 61.308 60.000 0.00 0.00 0.00 2.90
193 194 0.251341 GTTTGGGGGTCTGCATCTGT 60.251 55.000 0.00 0.00 0.00 3.41
194 195 0.251297 TTTGGGGGTCTGCATCTGTG 60.251 55.000 0.00 0.00 0.00 3.66
223 224 3.977244 CGGCCCGCAAAAGCTGTT 61.977 61.111 0.00 0.00 0.00 3.16
224 225 2.421314 GGCCCGCAAAAGCTGTTT 59.579 55.556 0.00 0.00 0.00 2.83
225 226 1.227527 GGCCCGCAAAAGCTGTTTT 60.228 52.632 0.00 0.00 36.22 2.43
226 227 0.032815 GGCCCGCAAAAGCTGTTTTA 59.967 50.000 0.00 0.00 33.93 1.52
227 228 1.136690 GCCCGCAAAAGCTGTTTTAC 58.863 50.000 0.00 0.00 33.93 2.01
228 229 1.404477 CCCGCAAAAGCTGTTTTACG 58.596 50.000 0.00 0.00 40.61 3.18
229 230 0.775861 CCGCAAAAGCTGTTTTACGC 59.224 50.000 0.00 4.68 39.92 4.42
230 231 0.425656 CGCAAAAGCTGTTTTACGCG 59.574 50.000 3.53 3.53 41.38 6.01
231 232 1.749153 GCAAAAGCTGTTTTACGCGA 58.251 45.000 15.93 0.00 33.93 5.87
232 233 2.113289 GCAAAAGCTGTTTTACGCGAA 58.887 42.857 15.93 0.00 33.93 4.70
233 234 2.098068 GCAAAAGCTGTTTTACGCGAAC 60.098 45.455 15.93 7.81 33.93 3.95
234 235 3.359654 CAAAAGCTGTTTTACGCGAACT 58.640 40.909 15.93 0.00 33.93 3.01
235 236 2.663279 AAGCTGTTTTACGCGAACTG 57.337 45.000 15.93 12.31 0.00 3.16
236 237 1.578583 AGCTGTTTTACGCGAACTGT 58.421 45.000 15.93 0.00 0.00 3.55
237 238 2.746269 AGCTGTTTTACGCGAACTGTA 58.254 42.857 15.93 0.00 0.00 2.74
238 239 3.323243 AGCTGTTTTACGCGAACTGTAT 58.677 40.909 15.93 1.93 0.00 2.29
239 240 4.487948 AGCTGTTTTACGCGAACTGTATA 58.512 39.130 15.93 0.00 0.00 1.47
240 241 5.107133 AGCTGTTTTACGCGAACTGTATAT 58.893 37.500 15.93 0.00 0.00 0.86
241 242 5.005394 AGCTGTTTTACGCGAACTGTATATG 59.995 40.000 15.93 0.00 0.00 1.78
242 243 5.133707 TGTTTTACGCGAACTGTATATGC 57.866 39.130 15.93 0.00 0.00 3.14
246 247 2.990774 CGCGAACTGTATATGCGTTT 57.009 45.000 0.00 0.00 43.50 3.60
247 248 3.298489 CGCGAACTGTATATGCGTTTT 57.702 42.857 0.00 0.00 43.50 2.43
248 249 3.019589 CGCGAACTGTATATGCGTTTTG 58.980 45.455 0.00 0.00 43.50 2.44
249 250 2.776225 GCGAACTGTATATGCGTTTTGC 59.224 45.455 0.00 2.12 46.70 3.68
250 251 3.485216 GCGAACTGTATATGCGTTTTGCT 60.485 43.478 8.38 0.00 46.63 3.91
251 252 4.021822 CGAACTGTATATGCGTTTTGCTG 58.978 43.478 0.00 0.00 46.63 4.41
252 253 4.342772 GAACTGTATATGCGTTTTGCTGG 58.657 43.478 0.00 0.00 46.63 4.85
253 254 2.097466 ACTGTATATGCGTTTTGCTGGC 59.903 45.455 0.00 0.00 46.63 4.85
254 255 1.403679 TGTATATGCGTTTTGCTGGCC 59.596 47.619 0.00 0.00 46.63 5.36
255 256 0.660488 TATATGCGTTTTGCTGGCCG 59.340 50.000 0.00 0.00 46.63 6.13
256 257 2.003658 ATATGCGTTTTGCTGGCCGG 62.004 55.000 7.41 7.41 46.63 6.13
259 260 3.977244 CGTTTTGCTGGCCGGCTT 61.977 61.111 35.60 0.00 0.00 4.35
260 261 2.421314 GTTTTGCTGGCCGGCTTT 59.579 55.556 35.60 0.00 0.00 3.51
261 262 1.227527 GTTTTGCTGGCCGGCTTTT 60.228 52.632 35.60 0.00 0.00 2.27
262 263 0.813610 GTTTTGCTGGCCGGCTTTTT 60.814 50.000 35.60 0.00 0.00 1.94
263 264 0.813210 TTTTGCTGGCCGGCTTTTTG 60.813 50.000 35.60 12.86 0.00 2.44
264 265 3.805891 TTGCTGGCCGGCTTTTTGC 62.806 57.895 35.60 21.75 41.94 3.68
265 266 4.298069 GCTGGCCGGCTTTTTGCA 62.298 61.111 30.01 13.75 45.15 4.08
266 267 2.048877 CTGGCCGGCTTTTTGCAG 60.049 61.111 28.56 19.63 45.15 4.41
271 272 3.763671 CGGCTTTTTGCAGGGTCT 58.236 55.556 0.00 0.00 45.15 3.85
272 273 1.286880 CGGCTTTTTGCAGGGTCTG 59.713 57.895 0.00 0.00 45.15 3.51
346 349 4.105057 GGTAGAGGAGAGAGGATACAAGGA 59.895 50.000 0.00 0.00 41.41 3.36
841 846 1.202818 GGCTCTCTCTCCCTCTCTCTC 60.203 61.905 0.00 0.00 0.00 3.20
842 847 1.771255 GCTCTCTCTCCCTCTCTCTCT 59.229 57.143 0.00 0.00 0.00 3.10
843 848 2.224402 GCTCTCTCTCCCTCTCTCTCTC 60.224 59.091 0.00 0.00 0.00 3.20
844 849 3.312890 CTCTCTCTCCCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
845 850 3.309296 TCTCTCTCCCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
846 851 3.051803 TCTCTCTCCCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
847 852 3.309296 TCTCTCCCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
848 853 3.051803 TCTCTCCCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
849 854 3.309296 TCTCCCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
850 855 3.051803 TCTCCCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
851 856 3.309296 TCCCTCTCTCTCTCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
852 857 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
868 873 3.123804 CTCTCTCTCTCTCTCGTGTAGC 58.876 54.545 0.00 0.00 0.00 3.58
1047 1060 1.903877 GCAGCAGCTCCTGGGACTTA 61.904 60.000 6.82 0.00 37.91 2.24
1074 1087 2.367202 CCTCGGTAGCCACCACCAT 61.367 63.158 1.25 0.00 46.14 3.55
1185 1207 2.014857 CCTCATCAACACCATCAGCAG 58.985 52.381 0.00 0.00 0.00 4.24
1333 1355 0.033504 CTACCAACGTGACCAGCACT 59.966 55.000 0.00 0.00 45.49 4.40
1966 2003 0.523546 TAAAGAAGAGCGAGCGAGCG 60.524 55.000 0.00 0.00 43.00 5.03
1967 2004 2.201436 AAAGAAGAGCGAGCGAGCGA 62.201 55.000 1.41 0.00 43.00 4.93
1968 2005 2.591129 AAGAAGAGCGAGCGAGCGAG 62.591 60.000 1.41 0.00 43.00 5.03
1969 2006 4.845705 AAGAGCGAGCGAGCGAGC 62.846 66.667 9.12 9.12 43.00 5.03
2015 2053 5.488919 GGATGGATTAACTAGGGATGGATGA 59.511 44.000 0.00 0.00 0.00 2.92
2095 2133 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2189 2239 1.852633 AGGGTTTGCTCCAATTAGCC 58.147 50.000 0.00 0.00 42.05 3.93
2195 2245 2.791347 TGCTCCAATTAGCCGGTTTA 57.209 45.000 1.90 0.00 42.05 2.01
2220 2270 5.581479 CCATGTGATCTATCTAGCTTCATGC 59.419 44.000 0.00 0.00 43.29 4.06
2238 2288 7.411157 GCTTCATGCTTAATTTTGTACTGCTTG 60.411 37.037 0.00 0.00 38.95 4.01
2255 2305 3.633525 TGCTTGAACTTGTCTCATTTGCT 59.366 39.130 0.00 0.00 0.00 3.91
2324 2374 3.969287 TTGAAGCTCAGACTGCTACAT 57.031 42.857 0.00 0.00 40.22 2.29
2454 2509 4.018506 ACTGGTTCATGAGAGAGAGAGAGA 60.019 45.833 0.00 0.00 0.00 3.10
2455 2510 4.525996 TGGTTCATGAGAGAGAGAGAGAG 58.474 47.826 0.00 0.00 0.00 3.20
2456 2511 4.227073 TGGTTCATGAGAGAGAGAGAGAGA 59.773 45.833 0.00 0.00 0.00 3.10
2457 2512 4.818546 GGTTCATGAGAGAGAGAGAGAGAG 59.181 50.000 0.00 0.00 0.00 3.20
2458 2513 5.396772 GGTTCATGAGAGAGAGAGAGAGAGA 60.397 48.000 0.00 0.00 0.00 3.10
2459 2514 5.541953 TCATGAGAGAGAGAGAGAGAGAG 57.458 47.826 0.00 0.00 0.00 3.20
2460 2515 5.211201 TCATGAGAGAGAGAGAGAGAGAGA 58.789 45.833 0.00 0.00 0.00 3.10
2461 2516 5.303845 TCATGAGAGAGAGAGAGAGAGAGAG 59.696 48.000 0.00 0.00 0.00 3.20
2462 2517 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
2463 2518 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
2464 2519 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
2465 2520 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2466 2521 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2467 2522 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2468 2523 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2469 2524 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2470 2525 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2471 2526 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2472 2527 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2473 2528 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2474 2529 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
2475 2530 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
2489 2544 4.067896 GAGAGAGAGGAGAGATGCTACTG 58.932 52.174 0.00 0.00 38.15 2.74
2555 2610 5.541484 TGTCATGCTGAGATCATAGTACCAT 59.459 40.000 0.00 0.00 0.00 3.55
2689 2744 4.457257 GGCTGGCTTTGATGAGATAATACC 59.543 45.833 0.00 0.00 0.00 2.73
2908 2963 0.891373 CGGCGATCACCTCTATCCAT 59.109 55.000 0.00 0.00 0.00 3.41
2909 2964 1.135257 CGGCGATCACCTCTATCCATC 60.135 57.143 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 9.743057 ACAATCGAAAACAAACTGAATTATTCA 57.257 25.926 7.46 7.46 38.17 2.57
25 26 9.743057 TCAACAATCGAAAACAAACTGAATTAT 57.257 25.926 0.00 0.00 0.00 1.28
26 27 9.574458 TTCAACAATCGAAAACAAACTGAATTA 57.426 25.926 0.00 0.00 0.00 1.40
27 28 8.472683 TTCAACAATCGAAAACAAACTGAATT 57.527 26.923 0.00 0.00 0.00 2.17
28 29 8.647143 ATTCAACAATCGAAAACAAACTGAAT 57.353 26.923 0.00 0.00 0.00 2.57
29 30 8.472683 AATTCAACAATCGAAAACAAACTGAA 57.527 26.923 0.00 0.00 0.00 3.02
30 31 9.743057 ATAATTCAACAATCGAAAACAAACTGA 57.257 25.926 0.00 0.00 0.00 3.41
31 32 9.782028 CATAATTCAACAATCGAAAACAAACTG 57.218 29.630 0.00 0.00 0.00 3.16
32 33 9.528018 ACATAATTCAACAATCGAAAACAAACT 57.472 25.926 0.00 0.00 0.00 2.66
35 36 8.759641 CCAACATAATTCAACAATCGAAAACAA 58.240 29.630 0.00 0.00 0.00 2.83
36 37 8.138074 TCCAACATAATTCAACAATCGAAAACA 58.862 29.630 0.00 0.00 0.00 2.83
37 38 8.514136 TCCAACATAATTCAACAATCGAAAAC 57.486 30.769 0.00 0.00 0.00 2.43
38 39 9.703892 AATCCAACATAATTCAACAATCGAAAA 57.296 25.926 0.00 0.00 0.00 2.29
39 40 9.703892 AAATCCAACATAATTCAACAATCGAAA 57.296 25.926 0.00 0.00 0.00 3.46
40 41 9.138062 CAAATCCAACATAATTCAACAATCGAA 57.862 29.630 0.00 0.00 0.00 3.71
41 42 8.518702 TCAAATCCAACATAATTCAACAATCGA 58.481 29.630 0.00 0.00 0.00 3.59
42 43 8.686397 TCAAATCCAACATAATTCAACAATCG 57.314 30.769 0.00 0.00 0.00 3.34
43 44 9.859427 TCTCAAATCCAACATAATTCAACAATC 57.141 29.630 0.00 0.00 0.00 2.67
48 49 9.153721 GCAAATCTCAAATCCAACATAATTCAA 57.846 29.630 0.00 0.00 0.00 2.69
49 50 7.488792 CGCAAATCTCAAATCCAACATAATTCA 59.511 33.333 0.00 0.00 0.00 2.57
50 51 7.043192 CCGCAAATCTCAAATCCAACATAATTC 60.043 37.037 0.00 0.00 0.00 2.17
51 52 6.757947 CCGCAAATCTCAAATCCAACATAATT 59.242 34.615 0.00 0.00 0.00 1.40
52 53 6.275335 CCGCAAATCTCAAATCCAACATAAT 58.725 36.000 0.00 0.00 0.00 1.28
53 54 5.394005 CCCGCAAATCTCAAATCCAACATAA 60.394 40.000 0.00 0.00 0.00 1.90
54 55 4.097741 CCCGCAAATCTCAAATCCAACATA 59.902 41.667 0.00 0.00 0.00 2.29
55 56 3.119029 CCCGCAAATCTCAAATCCAACAT 60.119 43.478 0.00 0.00 0.00 2.71
56 57 2.230992 CCCGCAAATCTCAAATCCAACA 59.769 45.455 0.00 0.00 0.00 3.33
57 58 2.879826 CCCGCAAATCTCAAATCCAAC 58.120 47.619 0.00 0.00 0.00 3.77
58 59 1.204467 GCCCGCAAATCTCAAATCCAA 59.796 47.619 0.00 0.00 0.00 3.53
59 60 0.817013 GCCCGCAAATCTCAAATCCA 59.183 50.000 0.00 0.00 0.00 3.41
60 61 1.106285 AGCCCGCAAATCTCAAATCC 58.894 50.000 0.00 0.00 0.00 3.01
61 62 1.745087 TCAGCCCGCAAATCTCAAATC 59.255 47.619 0.00 0.00 0.00 2.17
62 63 1.838112 TCAGCCCGCAAATCTCAAAT 58.162 45.000 0.00 0.00 0.00 2.32
63 64 1.473677 CATCAGCCCGCAAATCTCAAA 59.526 47.619 0.00 0.00 0.00 2.69
64 65 1.097232 CATCAGCCCGCAAATCTCAA 58.903 50.000 0.00 0.00 0.00 3.02
65 66 0.252761 TCATCAGCCCGCAAATCTCA 59.747 50.000 0.00 0.00 0.00 3.27
66 67 1.602311 ATCATCAGCCCGCAAATCTC 58.398 50.000 0.00 0.00 0.00 2.75
67 68 2.062971 AATCATCAGCCCGCAAATCT 57.937 45.000 0.00 0.00 0.00 2.40
68 69 2.466846 CAAATCATCAGCCCGCAAATC 58.533 47.619 0.00 0.00 0.00 2.17
69 70 1.472026 GCAAATCATCAGCCCGCAAAT 60.472 47.619 0.00 0.00 0.00 2.32
70 71 0.108709 GCAAATCATCAGCCCGCAAA 60.109 50.000 0.00 0.00 0.00 3.68
71 72 1.512230 GCAAATCATCAGCCCGCAA 59.488 52.632 0.00 0.00 0.00 4.85
72 73 2.763273 CGCAAATCATCAGCCCGCA 61.763 57.895 0.00 0.00 0.00 5.69
73 74 2.025156 CGCAAATCATCAGCCCGC 59.975 61.111 0.00 0.00 0.00 6.13
74 75 2.717485 CCGCAAATCATCAGCCCG 59.283 61.111 0.00 0.00 0.00 6.13
75 76 2.492773 CCCCGCAAATCATCAGCCC 61.493 63.158 0.00 0.00 0.00 5.19
76 77 0.825010 ATCCCCGCAAATCATCAGCC 60.825 55.000 0.00 0.00 0.00 4.85
77 78 0.313043 CATCCCCGCAAATCATCAGC 59.687 55.000 0.00 0.00 0.00 4.26
78 79 0.313043 GCATCCCCGCAAATCATCAG 59.687 55.000 0.00 0.00 0.00 2.90
79 80 0.395448 TGCATCCCCGCAAATCATCA 60.395 50.000 0.00 0.00 39.45 3.07
80 81 0.313043 CTGCATCCCCGCAAATCATC 59.687 55.000 0.00 0.00 42.45 2.92
81 82 1.741327 GCTGCATCCCCGCAAATCAT 61.741 55.000 0.00 0.00 42.45 2.45
82 83 2.417257 GCTGCATCCCCGCAAATCA 61.417 57.895 0.00 0.00 42.45 2.57
83 84 2.414594 GCTGCATCCCCGCAAATC 59.585 61.111 0.00 0.00 42.45 2.17
84 85 3.520862 CGCTGCATCCCCGCAAAT 61.521 61.111 0.00 0.00 42.45 2.32
92 93 4.842091 CTTTGCGCCGCTGCATCC 62.842 66.667 11.67 0.00 45.78 3.51
93 94 3.729906 CTCTTTGCGCCGCTGCATC 62.730 63.158 11.67 0.00 45.78 3.91
94 95 3.807538 CTCTTTGCGCCGCTGCAT 61.808 61.111 11.67 0.00 45.78 3.96
97 98 4.456253 CTGCTCTTTGCGCCGCTG 62.456 66.667 11.67 0.34 46.63 5.18
98 99 4.687215 TCTGCTCTTTGCGCCGCT 62.687 61.111 11.67 0.00 46.63 5.52
99 100 3.726517 TTCTGCTCTTTGCGCCGC 61.727 61.111 4.18 0.00 46.63 6.53
100 101 2.174349 GTTCTGCTCTTTGCGCCG 59.826 61.111 4.18 0.00 46.63 6.46
101 102 1.499502 GAGTTCTGCTCTTTGCGCC 59.500 57.895 4.18 0.00 46.63 6.53
102 103 1.131420 CGAGTTCTGCTCTTTGCGC 59.869 57.895 0.00 0.00 46.63 6.09
103 104 1.131420 GCGAGTTCTGCTCTTTGCG 59.869 57.895 0.00 0.00 46.63 4.85
104 105 0.801251 ATGCGAGTTCTGCTCTTTGC 59.199 50.000 0.00 0.00 41.98 3.68
105 106 2.030213 GCTATGCGAGTTCTGCTCTTTG 59.970 50.000 0.00 0.00 41.98 2.77
106 107 2.275318 GCTATGCGAGTTCTGCTCTTT 58.725 47.619 0.00 0.00 41.98 2.52
107 108 1.472376 GGCTATGCGAGTTCTGCTCTT 60.472 52.381 0.00 0.00 41.98 2.85
108 109 0.103937 GGCTATGCGAGTTCTGCTCT 59.896 55.000 0.00 0.00 41.98 4.09
109 110 1.211818 CGGCTATGCGAGTTCTGCTC 61.212 60.000 0.00 0.00 40.77 4.26
110 111 1.227089 CGGCTATGCGAGTTCTGCT 60.227 57.895 0.00 0.00 0.00 4.24
111 112 1.226974 TCGGCTATGCGAGTTCTGC 60.227 57.895 0.00 0.00 0.00 4.26
112 113 0.872021 GGTCGGCTATGCGAGTTCTG 60.872 60.000 0.00 0.00 0.00 3.02
113 114 1.437986 GGTCGGCTATGCGAGTTCT 59.562 57.895 0.00 0.00 0.00 3.01
114 115 1.591863 GGGTCGGCTATGCGAGTTC 60.592 63.158 0.00 0.00 0.00 3.01
115 116 2.499685 GGGTCGGCTATGCGAGTT 59.500 61.111 0.00 0.00 0.00 3.01
116 117 3.900892 CGGGTCGGCTATGCGAGT 61.901 66.667 0.00 0.00 0.00 4.18
117 118 2.459421 CTACGGGTCGGCTATGCGAG 62.459 65.000 0.00 0.00 0.00 5.03
118 119 2.516695 TACGGGTCGGCTATGCGA 60.517 61.111 0.00 0.00 0.00 5.10
119 120 2.050351 CTACGGGTCGGCTATGCG 60.050 66.667 0.00 0.00 0.00 4.73
120 121 0.103572 TTTCTACGGGTCGGCTATGC 59.896 55.000 0.00 0.00 0.00 3.14
121 122 2.470821 CTTTTCTACGGGTCGGCTATG 58.529 52.381 0.00 0.00 0.00 2.23
122 123 1.202498 GCTTTTCTACGGGTCGGCTAT 60.202 52.381 0.00 0.00 0.00 2.97
123 124 0.174162 GCTTTTCTACGGGTCGGCTA 59.826 55.000 0.00 0.00 0.00 3.93
124 125 1.079336 GCTTTTCTACGGGTCGGCT 60.079 57.895 0.00 0.00 0.00 5.52
125 126 0.743345 ATGCTTTTCTACGGGTCGGC 60.743 55.000 0.00 0.00 0.00 5.54
126 127 2.589798 TATGCTTTTCTACGGGTCGG 57.410 50.000 0.00 0.00 0.00 4.79
127 128 3.493503 GGAATATGCTTTTCTACGGGTCG 59.506 47.826 0.00 0.00 0.00 4.79
128 129 4.272748 GTGGAATATGCTTTTCTACGGGTC 59.727 45.833 0.00 0.00 0.00 4.46
129 130 4.196971 GTGGAATATGCTTTTCTACGGGT 58.803 43.478 0.00 0.00 0.00 5.28
130 131 4.813296 GTGGAATATGCTTTTCTACGGG 57.187 45.455 0.00 0.00 0.00 5.28
167 168 2.124860 GACCCCCAAACGGATCCG 60.125 66.667 32.20 32.20 46.03 4.18
168 169 1.077716 CAGACCCCCAAACGGATCC 60.078 63.158 0.00 0.00 0.00 3.36
169 170 1.749258 GCAGACCCCCAAACGGATC 60.749 63.158 0.00 0.00 0.00 3.36
170 171 1.863155 ATGCAGACCCCCAAACGGAT 61.863 55.000 0.00 0.00 0.00 4.18
171 172 2.478335 GATGCAGACCCCCAAACGGA 62.478 60.000 0.00 0.00 0.00 4.69
172 173 2.035626 ATGCAGACCCCCAAACGG 59.964 61.111 0.00 0.00 0.00 4.44
173 174 1.002134 AGATGCAGACCCCCAAACG 60.002 57.895 0.00 0.00 0.00 3.60
174 175 0.251341 ACAGATGCAGACCCCCAAAC 60.251 55.000 0.00 0.00 0.00 2.93
175 176 0.251297 CACAGATGCAGACCCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
176 177 1.379916 CACAGATGCAGACCCCCAA 59.620 57.895 0.00 0.00 0.00 4.12
177 178 3.080641 CACAGATGCAGACCCCCA 58.919 61.111 0.00 0.00 0.00 4.96
213 214 3.177643 CAGTTCGCGTAAAACAGCTTTTG 59.822 43.478 5.77 0.00 31.74 2.44
214 215 3.181504 ACAGTTCGCGTAAAACAGCTTTT 60.182 39.130 5.77 0.00 33.92 2.27
215 216 2.353579 ACAGTTCGCGTAAAACAGCTTT 59.646 40.909 5.77 0.00 0.00 3.51
216 217 1.937899 ACAGTTCGCGTAAAACAGCTT 59.062 42.857 5.77 0.00 0.00 3.74
217 218 1.578583 ACAGTTCGCGTAAAACAGCT 58.421 45.000 5.77 0.00 0.00 4.24
218 219 3.717350 ATACAGTTCGCGTAAAACAGC 57.283 42.857 5.77 0.00 0.00 4.40
219 220 5.188194 GCATATACAGTTCGCGTAAAACAG 58.812 41.667 5.77 2.79 0.00 3.16
220 221 4.259490 CGCATATACAGTTCGCGTAAAACA 60.259 41.667 5.77 0.00 40.99 2.83
221 222 4.191161 CGCATATACAGTTCGCGTAAAAC 58.809 43.478 5.77 3.08 40.99 2.43
222 223 4.425956 CGCATATACAGTTCGCGTAAAA 57.574 40.909 5.77 0.00 40.99 1.52
228 229 2.776225 GCAAAACGCATATACAGTTCGC 59.224 45.455 0.00 0.00 41.79 4.70
229 230 4.021822 CAGCAAAACGCATATACAGTTCG 58.978 43.478 0.00 0.00 46.13 3.95
230 231 4.342772 CCAGCAAAACGCATATACAGTTC 58.657 43.478 0.00 0.00 46.13 3.01
231 232 3.427503 GCCAGCAAAACGCATATACAGTT 60.428 43.478 0.00 0.00 46.13 3.16
232 233 2.097466 GCCAGCAAAACGCATATACAGT 59.903 45.455 0.00 0.00 46.13 3.55
233 234 2.541588 GGCCAGCAAAACGCATATACAG 60.542 50.000 0.00 0.00 46.13 2.74
234 235 1.403679 GGCCAGCAAAACGCATATACA 59.596 47.619 0.00 0.00 46.13 2.29
235 236 1.596954 CGGCCAGCAAAACGCATATAC 60.597 52.381 2.24 0.00 46.13 1.47
236 237 0.660488 CGGCCAGCAAAACGCATATA 59.340 50.000 2.24 0.00 46.13 0.86
237 238 1.433064 CGGCCAGCAAAACGCATAT 59.567 52.632 2.24 0.00 46.13 1.78
238 239 2.695759 CCGGCCAGCAAAACGCATA 61.696 57.895 2.24 0.00 46.13 3.14
239 240 4.054825 CCGGCCAGCAAAACGCAT 62.055 61.111 2.24 0.00 46.13 4.73
242 243 2.969677 AAAAGCCGGCCAGCAAAACG 62.970 55.000 26.15 0.00 34.23 3.60
243 244 0.813610 AAAAAGCCGGCCAGCAAAAC 60.814 50.000 26.15 0.00 34.23 2.43
244 245 0.813210 CAAAAAGCCGGCCAGCAAAA 60.813 50.000 26.15 0.00 34.23 2.44
245 246 1.227497 CAAAAAGCCGGCCAGCAAA 60.227 52.632 26.15 0.00 34.23 3.68
246 247 2.420890 CAAAAAGCCGGCCAGCAA 59.579 55.556 26.15 0.00 34.23 3.91
247 248 4.298069 GCAAAAAGCCGGCCAGCA 62.298 61.111 26.15 0.00 37.23 4.41
248 249 4.298069 TGCAAAAAGCCGGCCAGC 62.298 61.111 26.15 20.09 44.83 4.85
249 250 2.048877 CTGCAAAAAGCCGGCCAG 60.049 61.111 26.15 18.31 44.83 4.85
250 251 3.614698 CCTGCAAAAAGCCGGCCA 61.615 61.111 26.15 12.11 40.88 5.36
251 252 4.377708 CCCTGCAAAAAGCCGGCC 62.378 66.667 26.15 7.06 45.41 6.13
252 253 3.573772 GACCCTGCAAAAAGCCGGC 62.574 63.158 21.89 21.89 45.41 6.13
253 254 1.903404 AGACCCTGCAAAAAGCCGG 60.903 57.895 0.00 0.00 46.24 6.13
254 255 1.286880 CAGACCCTGCAAAAAGCCG 59.713 57.895 0.00 0.00 44.83 5.52
262 263 6.646429 AGAGTAACTCTAGCAGACCCTGCA 62.646 50.000 19.46 6.37 46.41 4.41
263 264 4.189452 AGAGTAACTCTAGCAGACCCTGC 61.189 52.174 10.69 10.69 44.22 4.85
264 265 3.626930 AGAGTAACTCTAGCAGACCCTG 58.373 50.000 0.00 0.00 39.28 4.45
265 266 5.195185 GTTAGAGTAACTCTAGCAGACCCT 58.805 45.833 0.00 0.00 42.92 4.34
266 267 4.948621 TGTTAGAGTAACTCTAGCAGACCC 59.051 45.833 0.00 0.00 44.88 4.46
271 272 5.817784 ACCTCTGTTAGAGTAACTCTAGCA 58.182 41.667 1.56 1.56 46.55 3.49
272 273 6.484308 CCTACCTCTGTTAGAGTAACTCTAGC 59.516 46.154 0.00 0.00 42.92 3.42
273 274 6.993902 CCCTACCTCTGTTAGAGTAACTCTAG 59.006 46.154 0.00 0.00 42.92 2.43
274 275 6.126536 CCCCTACCTCTGTTAGAGTAACTCTA 60.127 46.154 0.00 0.00 40.72 2.43
275 276 5.340194 CCCCTACCTCTGTTAGAGTAACTCT 60.340 48.000 0.00 0.00 40.72 3.24
276 277 4.888823 CCCCTACCTCTGTTAGAGTAACTC 59.111 50.000 5.24 0.00 40.72 3.01
277 278 4.543337 TCCCCTACCTCTGTTAGAGTAACT 59.457 45.833 5.24 0.00 40.72 2.24
278 279 4.864726 TCCCCTACCTCTGTTAGAGTAAC 58.135 47.826 5.24 0.00 40.72 2.50
279 280 4.792426 TCTCCCCTACCTCTGTTAGAGTAA 59.208 45.833 5.24 0.00 40.72 2.24
280 281 4.378047 TCTCCCCTACCTCTGTTAGAGTA 58.622 47.826 5.24 0.00 40.72 2.59
281 282 3.199671 TCTCCCCTACCTCTGTTAGAGT 58.800 50.000 5.24 0.00 40.72 3.24
282 283 3.203487 ACTCTCCCCTACCTCTGTTAGAG 59.797 52.174 0.00 0.00 41.96 2.43
283 284 3.199671 ACTCTCCCCTACCTCTGTTAGA 58.800 50.000 0.00 0.00 0.00 2.10
346 349 1.002011 GGCGGCCTCCTTCTCTTTT 60.002 57.895 12.87 0.00 0.00 2.27
435 439 5.083821 AGAAGAAAGAGGAGCAGTAGAACT 58.916 41.667 0.00 0.00 0.00 3.01
841 846 3.634448 ACGAGAGAGAGAGAGAGAGAGAG 59.366 52.174 0.00 0.00 0.00 3.20
842 847 3.381590 CACGAGAGAGAGAGAGAGAGAGA 59.618 52.174 0.00 0.00 0.00 3.10
843 848 3.131223 ACACGAGAGAGAGAGAGAGAGAG 59.869 52.174 0.00 0.00 0.00 3.20
844 849 3.096852 ACACGAGAGAGAGAGAGAGAGA 58.903 50.000 0.00 0.00 0.00 3.10
845 850 3.526931 ACACGAGAGAGAGAGAGAGAG 57.473 52.381 0.00 0.00 0.00 3.20
846 851 3.181479 GCTACACGAGAGAGAGAGAGAGA 60.181 52.174 0.00 0.00 0.00 3.10
847 852 3.123804 GCTACACGAGAGAGAGAGAGAG 58.876 54.545 0.00 0.00 0.00 3.20
848 853 2.764010 AGCTACACGAGAGAGAGAGAGA 59.236 50.000 0.00 0.00 0.00 3.10
849 854 3.179443 AGCTACACGAGAGAGAGAGAG 57.821 52.381 0.00 0.00 0.00 3.20
850 855 3.491964 GCTAGCTACACGAGAGAGAGAGA 60.492 52.174 7.70 0.00 0.00 3.10
851 856 2.800544 GCTAGCTACACGAGAGAGAGAG 59.199 54.545 7.70 0.00 0.00 3.20
852 857 2.432874 AGCTAGCTACACGAGAGAGAGA 59.567 50.000 17.69 0.00 0.00 3.10
868 873 4.437239 CAAAGTGTGTCCCTATGAGCTAG 58.563 47.826 0.00 0.00 0.00 3.42
1047 1060 1.395826 GGCTACCGAGGCTCATGTCT 61.396 60.000 15.95 0.00 44.83 3.41
1333 1355 2.491621 CTGCTGCATCTCGTCCGA 59.508 61.111 1.31 0.00 0.00 4.55
1974 2011 2.319025 TCCATCGCCTATATGGGACA 57.681 50.000 9.73 0.00 43.52 4.02
2015 2053 5.939883 CCTCTCTCTAGTCATCTCATCGATT 59.060 44.000 0.00 0.00 0.00 3.34
2095 2133 2.872245 CACAAACTCGCAAGGAGAAGAA 59.128 45.455 0.00 0.00 46.23 2.52
2189 2239 5.864474 GCTAGATAGATCACATGGTAAACCG 59.136 44.000 0.00 0.00 39.43 4.44
2195 2245 6.699366 CATGAAGCTAGATAGATCACATGGT 58.301 40.000 0.00 0.00 35.21 3.55
2220 2270 8.856490 ACAAGTTCAAGCAGTACAAAATTAAG 57.144 30.769 0.00 0.00 0.00 1.85
2238 2288 9.122613 GAAATTCTTAGCAAATGAGACAAGTTC 57.877 33.333 0.00 0.00 0.00 3.01
2255 2305 3.010584 AGGCTCCCAGCAAGAAATTCTTA 59.989 43.478 8.03 0.00 44.75 2.10
2429 2484 3.095332 TCTCTCTCTCATGAACCAGTGG 58.905 50.000 7.91 7.91 0.00 4.00
2454 2509 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
2455 2510 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
2456 2511 4.078922 TCTCCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
2457 2512 4.219115 TCTCCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
2458 2513 4.078922 TCTCTCCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
2459 2514 4.219115 TCTCTCCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
2460 2515 4.271807 TCTCTCCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
2461 2516 4.802248 GCATCTCTCCTCTCTCTCTCTCTC 60.802 54.167 0.00 0.00 0.00 3.20
2462 2517 3.072184 GCATCTCTCCTCTCTCTCTCTCT 59.928 52.174 0.00 0.00 0.00 3.10
2463 2518 3.072184 AGCATCTCTCCTCTCTCTCTCTC 59.928 52.174 0.00 0.00 0.00 3.20
2464 2519 3.051581 AGCATCTCTCCTCTCTCTCTCT 58.948 50.000 0.00 0.00 0.00 3.10
2465 2520 3.498774 AGCATCTCTCCTCTCTCTCTC 57.501 52.381 0.00 0.00 0.00 3.20
2466 2521 3.976654 AGTAGCATCTCTCCTCTCTCTCT 59.023 47.826 0.00 0.00 0.00 3.10
2467 2522 4.067896 CAGTAGCATCTCTCCTCTCTCTC 58.932 52.174 0.00 0.00 0.00 3.20
2468 2523 3.748668 GCAGTAGCATCTCTCCTCTCTCT 60.749 52.174 0.00 0.00 41.58 3.10
2469 2524 2.554032 GCAGTAGCATCTCTCCTCTCTC 59.446 54.545 0.00 0.00 41.58 3.20
2470 2525 2.586425 GCAGTAGCATCTCTCCTCTCT 58.414 52.381 0.00 0.00 41.58 3.10
2489 2544 4.497300 ACCAATAAATGCATGTGAGTTGC 58.503 39.130 0.00 0.00 40.55 4.17
2555 2610 2.415625 GGGCGTGTGTGTGTTTGTTAAA 60.416 45.455 0.00 0.00 0.00 1.52
2689 2744 5.342017 TCCATCTACACCCCTATGGATTAG 58.658 45.833 0.00 0.00 42.25 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.