Multiple sequence alignment - TraesCS7A01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G321500 chr7A 100.000 6645 0 0 1 6645 464263609 464270253 0.000000e+00 12272
1 TraesCS7A01G321500 chr7A 95.445 483 22 0 2057 2539 696779743 696779261 0.000000e+00 771
2 TraesCS7A01G321500 chr7B 97.531 2268 42 12 2537 4803 417866080 417868334 0.000000e+00 3866
3 TraesCS7A01G321500 chr7B 91.912 1904 92 31 4766 6645 417868372 417870237 0.000000e+00 2606
4 TraesCS7A01G321500 chr7B 88.588 2033 108 42 102 2053 417864095 417866084 0.000000e+00 2355
5 TraesCS7A01G321500 chr7D 97.251 1746 43 4 2539 4283 406895625 406897366 0.000000e+00 2953
6 TraesCS7A01G321500 chr7D 94.869 877 29 6 4766 5641 406898825 406899686 0.000000e+00 1356
7 TraesCS7A01G321500 chr7D 89.289 1111 51 29 679 1739 406894250 406895342 0.000000e+00 1330
8 TraesCS7A01G321500 chr7D 90.457 985 54 17 5686 6645 406901728 406902697 0.000000e+00 1262
9 TraesCS7A01G321500 chr7D 88.509 644 40 10 1 625 406872345 406872973 0.000000e+00 749
10 TraesCS7A01G321500 chr7D 98.118 372 4 2 4284 4655 406897626 406897994 0.000000e+00 645
11 TraesCS7A01G321500 chr7D 96.842 285 9 0 1769 2053 406895343 406895627 1.680000e-130 477
12 TraesCS7A01G321500 chr7D 95.541 157 2 3 4645 4797 406898664 406898819 5.150000e-61 246
13 TraesCS7A01G321500 chr7D 88.421 95 8 2 5940 6031 406902125 406902219 1.960000e-20 111
14 TraesCS7A01G321500 chr6B 97.590 498 9 3 2051 2546 38956010 38955514 0.000000e+00 850
15 TraesCS7A01G321500 chr5A 98.333 480 8 0 2057 2536 612707678 612708157 0.000000e+00 843
16 TraesCS7A01G321500 chr5A 95.661 484 21 0 2057 2540 481919888 481920371 0.000000e+00 778
17 TraesCS7A01G321500 chr5A 95.238 483 23 0 2056 2538 18066955 18066473 0.000000e+00 765
18 TraesCS7A01G321500 chr3B 95.833 480 20 0 2057 2536 31695563 31696042 0.000000e+00 776
19 TraesCS7A01G321500 chr2B 94.422 502 27 1 2043 2543 726750496 726750997 0.000000e+00 771
20 TraesCS7A01G321500 chr2B 94.223 502 28 1 2043 2543 726709096 726709597 0.000000e+00 765
21 TraesCS7A01G321500 chr5B 95.426 481 22 0 2056 2536 277805933 277805453 0.000000e+00 767


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G321500 chr7A 464263609 464270253 6644 False 12272.000000 12272 100.0000 1 6645 1 chr7A.!!$F1 6644
1 TraesCS7A01G321500 chr7B 417864095 417870237 6142 False 2942.333333 3866 92.6770 102 6645 3 chr7B.!!$F1 6543
2 TraesCS7A01G321500 chr7D 406894250 406902697 8447 False 1047.500000 2953 93.8485 679 6645 8 chr7D.!!$F2 5966
3 TraesCS7A01G321500 chr7D 406872345 406872973 628 False 749.000000 749 88.5090 1 625 1 chr7D.!!$F1 624
4 TraesCS7A01G321500 chr2B 726750496 726750997 501 False 771.000000 771 94.4220 2043 2543 1 chr2B.!!$F2 500
5 TraesCS7A01G321500 chr2B 726709096 726709597 501 False 765.000000 765 94.2230 2043 2543 1 chr2B.!!$F1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
554 588 0.733150 GGACCGCTTACAAGGAATGC 59.267 55.000 0.00 0.0 0.00 3.56 F
1744 1859 0.106569 ATCGCCCATTTGATCCTGCA 60.107 50.000 0.00 0.0 0.00 4.41 F
2376 2492 0.314302 CCTCGACCCATGATACCGTC 59.686 60.000 0.00 0.0 0.00 4.79 F
2511 2627 1.137594 TCCCCGTTCCTTGTTCCCAT 61.138 55.000 0.00 0.0 0.00 4.00 F
4017 4135 0.609662 ACCATGATGTTTTGCCCTGC 59.390 50.000 0.00 0.0 0.00 4.85 F
4231 4349 3.194542 TGTCTTTTGTTGGACCAAACTGG 59.805 43.478 8.94 0.0 45.02 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2171 0.249741 CCCGTTTCCCGCTACTATGG 60.250 60.000 0.00 0.0 34.38 2.74 R
2646 2763 2.526304 AGCACGAAACTGCAGTAAGA 57.474 45.000 22.01 0.0 39.86 2.10 R
3520 3638 2.808543 CACTTGTAACTTCCAGGTGAGC 59.191 50.000 0.00 0.0 41.04 4.26 R
4087 4205 4.202141 GCAGATACAGCCAAATGCCATTAA 60.202 41.667 0.00 0.0 42.71 1.40 R
4820 5956 0.467290 TGGGGCAAGAAGAACACCAC 60.467 55.000 0.00 0.0 0.00 4.16 R
6124 9301 0.253327 GCAACTAGGGTTCCAGAGGG 59.747 60.000 0.00 0.0 32.73 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
275 290 9.281075 AGGAAAATGTTCGTATAATTTAAACGC 57.719 29.630 0.00 0.00 36.60 4.84
437 471 6.127535 CGGATAGTGGTAAGTTCTTCCTTGTA 60.128 42.308 0.00 0.00 0.00 2.41
439 473 5.881923 AGTGGTAAGTTCTTCCTTGTACA 57.118 39.130 0.00 0.00 0.00 2.90
464 498 2.635427 GGTTGAGAGAAGGAGGTGTCTT 59.365 50.000 0.00 0.00 0.00 3.01
478 512 1.342819 GTGTCTTCTCTGAGCCTGTGT 59.657 52.381 0.00 0.00 0.00 3.72
479 513 2.042464 TGTCTTCTCTGAGCCTGTGTT 58.958 47.619 0.00 0.00 0.00 3.32
533 567 6.094325 AGACCACGAGAAGTAGAAATAGTGAG 59.906 42.308 0.00 0.00 0.00 3.51
536 570 6.459024 CCACGAGAAGTAGAAATAGTGAGAGG 60.459 46.154 0.00 0.00 0.00 3.69
538 572 6.316890 ACGAGAAGTAGAAATAGTGAGAGGAC 59.683 42.308 0.00 0.00 0.00 3.85
554 588 0.733150 GGACCGCTTACAAGGAATGC 59.267 55.000 0.00 0.00 0.00 3.56
564 598 5.731686 GCTTACAAGGAATGCTGTGATAAGC 60.732 44.000 0.00 0.00 43.82 3.09
584 618 5.903198 AGCTGGAAAGAAGGCTAAGATAT 57.097 39.130 0.00 0.00 32.94 1.63
606 640 3.647636 TGGTGAAAAGGGTTTCCATGAA 58.352 40.909 0.00 0.00 42.20 2.57
627 661 9.859427 CATGAAATGGTAAGCAAAAGAGATTAA 57.141 29.630 0.00 0.00 41.79 1.40
643 677 6.931838 AGAGATTAATCCTACACAAACACGA 58.068 36.000 11.92 0.00 0.00 4.35
658 692 2.262637 ACACGAGGGTTGGGAATAAGA 58.737 47.619 0.00 0.00 0.00 2.10
659 693 2.844348 ACACGAGGGTTGGGAATAAGAT 59.156 45.455 0.00 0.00 0.00 2.40
730 782 4.986034 CGGTGGTTTGGGAATAAGTTTTTC 59.014 41.667 0.00 0.00 0.00 2.29
731 783 5.302360 GGTGGTTTGGGAATAAGTTTTTCC 58.698 41.667 14.77 14.77 41.64 3.13
765 817 4.394729 TGGTTTGGGAATAAGTGAGTGTC 58.605 43.478 0.00 0.00 0.00 3.67
767 819 4.455877 GGTTTGGGAATAAGTGAGTGTCAG 59.544 45.833 0.00 0.00 0.00 3.51
871 938 1.536073 CCGAGAGTTGCAGTCCCTGA 61.536 60.000 0.00 0.00 32.44 3.86
920 987 1.316706 ACTCGGCCTCTTCTTCCTCG 61.317 60.000 0.00 0.00 0.00 4.63
933 1000 4.131649 TCTTCCTCGCGATAAAAATCCA 57.868 40.909 10.36 0.00 0.00 3.41
934 1001 4.703897 TCTTCCTCGCGATAAAAATCCAT 58.296 39.130 10.36 0.00 0.00 3.41
935 1002 4.750098 TCTTCCTCGCGATAAAAATCCATC 59.250 41.667 10.36 0.00 0.00 3.51
936 1003 3.399330 TCCTCGCGATAAAAATCCATCC 58.601 45.455 10.36 0.00 0.00 3.51
954 1021 1.164041 CCCCACCACGAACAGACAAC 61.164 60.000 0.00 0.00 0.00 3.32
957 1024 1.063469 CCACCACGAACAGACAACAAC 59.937 52.381 0.00 0.00 0.00 3.32
960 1027 3.013921 ACCACGAACAGACAACAACAAT 58.986 40.909 0.00 0.00 0.00 2.71
971 1042 6.015434 ACAGACAACAACAATAAGATTTCCCC 60.015 38.462 0.00 0.00 0.00 4.81
980 1051 5.536916 ACAATAAGATTTCCCCAAACGAACA 59.463 36.000 0.00 0.00 0.00 3.18
999 1071 2.032924 ACAAAAAGAAAACTCTCGGGCG 59.967 45.455 0.00 0.00 0.00 6.13
1148 1220 4.500826 GGTCTCTCCCCCTCCCCC 62.501 77.778 0.00 0.00 0.00 5.40
1175 1247 2.278857 CTCGCGTCCAATCCTCGG 60.279 66.667 5.77 0.00 0.00 4.63
1176 1248 3.064987 CTCGCGTCCAATCCTCGGT 62.065 63.158 5.77 0.00 0.00 4.69
1177 1249 1.721664 CTCGCGTCCAATCCTCGGTA 61.722 60.000 5.77 0.00 0.00 4.02
1178 1250 1.299165 CGCGTCCAATCCTCGGTAG 60.299 63.158 0.00 0.00 0.00 3.18
1179 1251 1.814527 GCGTCCAATCCTCGGTAGT 59.185 57.895 0.00 0.00 0.00 2.73
1191 1263 2.601763 CCTCGGTAGTAATTCGTTGTGC 59.398 50.000 0.00 0.00 0.00 4.57
1227 1299 0.476771 TCAGTTCTGGTTTCCCCACC 59.523 55.000 0.00 0.00 38.72 4.61
1253 1325 1.772063 CTGCGCGTTATTAGGGCCAC 61.772 60.000 8.43 0.00 45.37 5.01
1328 1402 5.046591 TGTTCAGAGATTAGGTTTCGGATGT 60.047 40.000 0.00 0.00 0.00 3.06
1359 1433 2.024655 TCTAGGGTTTCGAGAGGCCTAA 60.025 50.000 4.42 0.00 0.00 2.69
1373 1447 2.040412 AGGCCTAAGTGAAAAGTCCAGG 59.960 50.000 1.29 0.00 0.00 4.45
1396 1470 8.585018 CAGGACCTTACAATTGATTAAACCTTT 58.415 33.333 13.59 0.00 0.00 3.11
1418 1492 5.531122 TGATTAAATAGTAGAGCAGCCGT 57.469 39.130 0.00 0.00 0.00 5.68
1447 1521 4.103153 CCTGCTCTTATCACTATTTCCCCA 59.897 45.833 0.00 0.00 0.00 4.96
1487 1561 5.570234 TTTCATTATGTTAAAGGGACGCC 57.430 39.130 0.00 0.00 0.00 5.68
1492 1566 1.190833 TGTTAAAGGGACGCCGGGTA 61.191 55.000 2.18 0.00 0.00 3.69
1522 1608 1.093159 CTGTGGAAATCTGCCTGCTC 58.907 55.000 0.00 0.00 0.00 4.26
1523 1609 0.401356 TGTGGAAATCTGCCTGCTCA 59.599 50.000 0.00 0.00 0.00 4.26
1524 1610 1.005097 TGTGGAAATCTGCCTGCTCAT 59.995 47.619 0.00 0.00 0.00 2.90
1525 1611 1.404391 GTGGAAATCTGCCTGCTCATG 59.596 52.381 0.00 0.00 0.00 3.07
1526 1612 1.005097 TGGAAATCTGCCTGCTCATGT 59.995 47.619 0.00 0.00 0.00 3.21
1527 1613 1.674962 GGAAATCTGCCTGCTCATGTC 59.325 52.381 0.00 0.00 0.00 3.06
1528 1614 2.362736 GAAATCTGCCTGCTCATGTCA 58.637 47.619 0.00 0.00 0.00 3.58
1529 1615 2.039818 AATCTGCCTGCTCATGTCAG 57.960 50.000 9.68 9.68 0.00 3.51
1530 1616 0.464013 ATCTGCCTGCTCATGTCAGC 60.464 55.000 10.76 5.95 40.13 4.26
1531 1617 2.435410 TGCCTGCTCATGTCAGCG 60.435 61.111 10.76 6.89 42.92 5.18
1532 1618 2.125391 GCCTGCTCATGTCAGCGA 60.125 61.111 10.76 0.00 42.92 4.93
1533 1619 1.523258 GCCTGCTCATGTCAGCGAT 60.523 57.895 10.76 0.00 42.92 4.58
1667 1781 4.161001 AGCTTGATTGGTTCCCATGAATTC 59.839 41.667 0.00 0.00 31.53 2.17
1687 1801 8.367911 TGAATTCTATACTAGGGCTGTATTGTG 58.632 37.037 7.05 0.00 33.32 3.33
1744 1859 0.106569 ATCGCCCATTTGATCCTGCA 60.107 50.000 0.00 0.00 0.00 4.41
1870 1986 4.984161 CACATGGTGGTTGAATTTTGTCTC 59.016 41.667 0.00 0.00 0.00 3.36
1919 2035 0.478072 TGGTCCCTTGTTGCAGTCAT 59.522 50.000 0.00 0.00 0.00 3.06
1981 2097 7.496529 TTGTCCATGTCTTTCTGTTTTAGAG 57.503 36.000 0.00 0.00 36.61 2.43
2055 2171 2.509569 TCTGCTCTGATCTATCCGGAC 58.490 52.381 6.12 0.00 0.00 4.79
2065 2181 2.708051 TCTATCCGGACCATAGTAGCG 58.292 52.381 6.12 0.00 0.00 4.26
2164 2280 4.870315 GGTACGATTCGATGAAGATTCG 57.130 45.455 13.95 8.94 44.58 3.34
2169 2285 2.004583 TTCGATGAAGATTCGGCGTT 57.995 45.000 6.85 0.00 37.22 4.84
2190 2306 2.188994 GCAGCCTGCTCCTCGATT 59.811 61.111 10.04 0.00 40.96 3.34
2201 2317 1.137872 CTCCTCGATTCAGGTTCCAGG 59.862 57.143 0.00 0.00 34.76 4.45
2218 2334 1.068333 CAGGATCCAACAGCCAAAACG 60.068 52.381 15.82 0.00 30.00 3.60
2219 2335 0.958822 GGATCCAACAGCCAAAACGT 59.041 50.000 6.95 0.00 0.00 3.99
2284 2400 2.234908 CCTCGTTCTTCCTCAAGTCCAT 59.765 50.000 0.00 0.00 0.00 3.41
2290 2406 7.617225 TCGTTCTTCCTCAAGTCCATTAATTA 58.383 34.615 0.00 0.00 0.00 1.40
2312 2428 4.019174 ACAAGGGATCCATTAACAGCAAG 58.981 43.478 12.07 0.00 0.00 4.01
2335 2451 2.878429 CTGACCGTCAGGGAGTCG 59.122 66.667 19.29 0.00 40.71 4.18
2369 2485 0.608130 CTGTGTTCCTCGACCCATGA 59.392 55.000 0.00 0.00 0.00 3.07
2376 2492 0.314302 CCTCGACCCATGATACCGTC 59.686 60.000 0.00 0.00 0.00 4.79
2457 2573 5.411977 CGAGAGATGTATACCCTCGTTGTAT 59.588 44.000 17.99 0.00 41.02 2.29
2493 2609 2.462782 CCGACTCTCGTCCCTCGTC 61.463 68.421 0.00 0.00 38.40 4.20
2503 2619 3.001406 CCCTCGTCCCCGTTCCTT 61.001 66.667 0.00 0.00 35.01 3.36
2511 2627 1.137594 TCCCCGTTCCTTGTTCCCAT 61.138 55.000 0.00 0.00 0.00 4.00
2603 2719 6.461092 CGTTTATCAGGGTAGATCTTGCACTA 60.461 42.308 0.00 0.00 0.00 2.74
2605 2721 7.618019 TTATCAGGGTAGATCTTGCACTATT 57.382 36.000 0.00 0.00 0.00 1.73
2884 3002 5.956068 TTTATTATGCTGCTGTGTGTTGA 57.044 34.783 0.00 0.00 0.00 3.18
2896 3014 5.983475 GCTGTGTGTTGATATCAGCTAATC 58.017 41.667 18.83 8.67 45.14 1.75
2906 3024 6.346896 TGATATCAGCTAATCATCAGATGCC 58.653 40.000 5.41 0.00 33.90 4.40
2969 3087 7.327214 TGTAACAAAAGGATGTTTGCTTTCTT 58.673 30.769 0.00 0.00 42.01 2.52
3561 3679 4.697352 AGTGCACTTCTGTTCATCATAACC 59.303 41.667 15.25 0.00 0.00 2.85
3689 3807 1.486726 GATGGGGAGTGGTAAGACCTG 59.513 57.143 0.00 0.00 39.58 4.00
3774 3892 6.279123 TGTTTGCAATTTGTTTGATCAGCTA 58.721 32.000 0.00 0.00 37.53 3.32
3873 3991 6.485171 ACAAGGAAGAGGTATGCTAATTGTT 58.515 36.000 0.00 0.00 0.00 2.83
4017 4135 0.609662 ACCATGATGTTTTGCCCTGC 59.390 50.000 0.00 0.00 0.00 4.85
4231 4349 3.194542 TGTCTTTTGTTGGACCAAACTGG 59.805 43.478 8.94 0.00 45.02 4.00
4275 4393 5.589855 TCCACTTGGCATGTGAATATGTTAG 59.410 40.000 28.92 12.77 37.60 2.34
4276 4394 5.357878 CCACTTGGCATGTGAATATGTTAGT 59.642 40.000 28.92 4.57 37.60 2.24
4277 4395 6.542005 CCACTTGGCATGTGAATATGTTAGTA 59.458 38.462 28.92 0.00 37.60 1.82
4278 4396 7.229306 CCACTTGGCATGTGAATATGTTAGTAT 59.771 37.037 28.92 0.00 37.60 2.12
4279 4397 9.271828 CACTTGGCATGTGAATATGTTAGTATA 57.728 33.333 24.62 0.00 37.60 1.47
4280 4398 9.845740 ACTTGGCATGTGAATATGTTAGTATAA 57.154 29.630 5.09 0.00 0.00 0.98
4322 4701 4.286032 TGGCTTCAGTTTACATACCAGTCT 59.714 41.667 0.00 0.00 0.00 3.24
4580 4959 6.830912 ACTTAAGATCGATCCAAATGATCCA 58.169 36.000 21.66 0.00 46.06 3.41
4646 5706 6.991938 ACAATTGCAAAGTTAGCCTTGAATA 58.008 32.000 1.71 0.00 32.32 1.75
4820 5956 4.101585 TCAGGGCTTCCACATTATGTCTAG 59.898 45.833 0.00 0.00 0.00 2.43
4831 5967 6.313905 CCACATTATGTCTAGTGGTGTTCTTC 59.686 42.308 0.00 0.00 44.95 2.87
4866 6002 5.485662 AATTAGCGGCTCATTTGTACTTC 57.514 39.130 5.39 0.00 0.00 3.01
4870 6006 2.423538 GCGGCTCATTTGTACTTCCATT 59.576 45.455 0.00 0.00 0.00 3.16
5162 6298 8.090788 TCCTCACTATTTGGCTAAAACTATCT 57.909 34.615 0.00 0.00 0.00 1.98
5190 6326 1.663695 GCTTGCAAGCCCTTATACGA 58.336 50.000 36.21 0.00 46.20 3.43
5191 6327 1.599542 GCTTGCAAGCCCTTATACGAG 59.400 52.381 36.21 4.42 46.20 4.18
5213 6349 6.515862 CGAGTATTTGGCTAGAGCAGTCTAAT 60.516 42.308 3.54 0.00 44.36 1.73
5226 6362 4.081420 AGCAGTCTAATGACACCCTAACTG 60.081 45.833 0.00 0.00 45.20 3.16
5257 6393 4.798574 ACAATTGCTTCCTTTTGTCGATC 58.201 39.130 5.05 0.00 0.00 3.69
5458 6597 1.849039 AGGATGGTTCTTCTGGGGATG 59.151 52.381 0.00 0.00 0.00 3.51
5461 6600 0.329261 TGGTTCTTCTGGGGATGCAG 59.671 55.000 0.00 0.00 0.00 4.41
5525 6664 3.996825 GCACTTTATTGCCGGACTG 57.003 52.632 5.05 0.00 36.42 3.51
5637 6776 8.137437 ACTCAATGTTTAGTCTCAATTTTGTGG 58.863 33.333 0.00 0.00 0.00 4.17
5657 8816 2.029918 GGAAGTCATGTTTTCACTGCCC 60.030 50.000 11.93 2.45 0.00 5.36
5677 8836 3.002965 CCCGAGTTTTACACCACAGTTTC 59.997 47.826 0.00 0.00 0.00 2.78
5683 8842 6.795399 AGTTTTACACCACAGTTTCATCAAG 58.205 36.000 0.00 0.00 0.00 3.02
5684 8843 6.377146 AGTTTTACACCACAGTTTCATCAAGT 59.623 34.615 0.00 0.00 0.00 3.16
5775 8938 2.224402 ACTGAACCAGACTCTTCTTGCC 60.224 50.000 0.45 0.00 35.18 4.52
5817 8980 7.080473 TGAACATTCATCATACCAGACTTGGG 61.080 42.308 0.00 0.00 39.51 4.12
5827 8990 1.271054 CCAGACTTGGGAGGTGTCTTG 60.271 57.143 0.00 0.00 41.05 3.02
5828 8991 1.417890 CAGACTTGGGAGGTGTCTTGT 59.582 52.381 0.00 0.00 38.80 3.16
5829 8992 1.694696 AGACTTGGGAGGTGTCTTGTC 59.305 52.381 0.00 0.00 37.76 3.18
5830 8993 1.694696 GACTTGGGAGGTGTCTTGTCT 59.305 52.381 0.00 0.00 0.00 3.41
5831 8994 2.104963 GACTTGGGAGGTGTCTTGTCTT 59.895 50.000 0.00 0.00 0.00 3.01
5905 9068 7.575414 TTCTTACAGCATTTTGTTGTCCTTA 57.425 32.000 0.09 0.00 40.95 2.69
5918 9081 8.431910 TTTGTTGTCCTTATAGAAGTCCTAGT 57.568 34.615 0.00 0.00 0.00 2.57
5919 9082 7.406031 TGTTGTCCTTATAGAAGTCCTAGTG 57.594 40.000 0.00 0.00 0.00 2.74
5920 9083 6.380274 TGTTGTCCTTATAGAAGTCCTAGTGG 59.620 42.308 0.00 0.00 0.00 4.00
5921 9084 4.894114 TGTCCTTATAGAAGTCCTAGTGGC 59.106 45.833 0.00 0.00 0.00 5.01
5928 9103 9.178758 CTTATAGAAGTCCTAGTGGCAATTTTT 57.821 33.333 0.00 0.00 0.00 1.94
5982 9157 8.040132 ACAAAACAATTGTCAGGAGAAATTTCA 58.960 29.630 19.99 0.00 0.00 2.69
5984 9159 8.822652 AAACAATTGTCAGGAGAAATTTCATC 57.177 30.769 19.99 13.35 0.00 2.92
5991 9166 6.152831 TGTCAGGAGAAATTTCATCGTCTCTA 59.847 38.462 19.99 0.00 37.31 2.43
6014 9189 0.601558 CCTTGTTGCTGCTGATGCTT 59.398 50.000 0.00 0.00 40.48 3.91
6031 9206 0.993746 CTTGCGTTGCTGCGAGTTTC 60.994 55.000 4.77 0.00 40.77 2.78
6032 9207 1.710103 TTGCGTTGCTGCGAGTTTCA 61.710 50.000 4.77 0.00 37.81 2.69
6034 9209 0.385974 GCGTTGCTGCGAGTTTCATT 60.386 50.000 4.77 0.00 0.00 2.57
6040 9215 2.031769 TGCTGCGAGTTTCATTCACTTG 60.032 45.455 0.00 0.00 0.00 3.16
6047 9222 5.514914 GCGAGTTTCATTCACTTGTTTGAAA 59.485 36.000 0.00 0.00 38.95 2.69
6092 9269 5.007034 TCTGTTGTCACCTCTTTTGTTTCA 58.993 37.500 0.00 0.00 0.00 2.69
6120 9297 7.840931 ACAAAAGAGTTGTCAGGAGAAATTTT 58.159 30.769 0.00 0.00 0.00 1.82
6124 9301 5.532779 AGAGTTGTCAGGAGAAATTTTGTCC 59.467 40.000 15.69 15.69 43.13 4.02
6125 9302 4.584743 AGTTGTCAGGAGAAATTTTGTCCC 59.415 41.667 18.88 7.24 43.81 4.46
6284 9476 8.986477 TGGAAGAAAAATAGAAAATAAGCAGC 57.014 30.769 0.00 0.00 0.00 5.25
6286 9478 9.080915 GGAAGAAAAATAGAAAATAAGCAGCAG 57.919 33.333 0.00 0.00 0.00 4.24
6313 9505 7.885297 TGATGTCCCAGTTTCTCTTTATTTTG 58.115 34.615 0.00 0.00 0.00 2.44
6340 9532 1.270518 ACTCACAGCTTGCTGGTAGTG 60.271 52.381 23.98 14.20 0.00 2.74
6343 9535 0.250467 ACAGCTTGCTGGTAGTGGTG 60.250 55.000 23.98 0.00 0.00 4.17
6344 9536 0.957395 CAGCTTGCTGGTAGTGGTGG 60.957 60.000 14.25 0.00 0.00 4.61
6347 9539 1.944430 GCTTGCTGGTAGTGGTGGTAC 60.944 57.143 0.00 0.00 0.00 3.34
6348 9540 1.623811 CTTGCTGGTAGTGGTGGTACT 59.376 52.381 0.00 0.00 34.71 2.73
6349 9541 2.608593 TGCTGGTAGTGGTGGTACTA 57.391 50.000 0.00 0.00 32.19 1.82
6350 9542 2.892118 TGCTGGTAGTGGTGGTACTAA 58.108 47.619 0.00 0.00 35.12 2.24
6351 9543 3.446968 TGCTGGTAGTGGTGGTACTAAT 58.553 45.455 0.00 0.00 35.12 1.73
6367 9559 8.812972 GTGGTACTAATAGATATCACCCATGAA 58.187 37.037 5.32 0.00 38.69 2.57
6478 9670 2.505498 CGATGACGTCGCGAAAGGG 61.505 63.158 21.45 2.92 44.33 3.95
6492 9685 3.181479 GCGAAAGGGAAGGAAAAACAGTT 60.181 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 255 5.789710 ACGAACATTTTCCTACAATACGG 57.210 39.130 0.00 0.00 0.00 4.02
273 288 5.309652 ACTTTTAAAAATGCAAAGACGCG 57.690 34.783 3.53 3.53 32.73 6.01
413 447 6.051179 ACAAGGAAGAACTTACCACTATCC 57.949 41.667 0.00 0.00 0.00 2.59
415 449 7.453752 TCTGTACAAGGAAGAACTTACCACTAT 59.546 37.037 0.00 0.00 0.00 2.12
421 455 6.465084 ACCATCTGTACAAGGAAGAACTTAC 58.535 40.000 13.79 0.00 0.00 2.34
437 471 2.836981 CCTCCTTCTCTCAACCATCTGT 59.163 50.000 0.00 0.00 0.00 3.41
439 473 2.836981 CACCTCCTTCTCTCAACCATCT 59.163 50.000 0.00 0.00 0.00 2.90
464 498 1.649321 ATCCAACACAGGCTCAGAGA 58.351 50.000 0.00 0.00 0.00 3.10
467 501 2.768253 TGTATCCAACACAGGCTCAG 57.232 50.000 0.00 0.00 31.43 3.35
478 512 5.127031 TGTCTTGATCAGTCGATGTATCCAA 59.873 40.000 0.00 0.00 29.66 3.53
479 513 4.644685 TGTCTTGATCAGTCGATGTATCCA 59.355 41.667 0.00 0.00 29.66 3.41
533 567 2.280628 CATTCCTTGTAAGCGGTCCTC 58.719 52.381 0.00 0.00 0.00 3.71
536 570 1.398390 CAGCATTCCTTGTAAGCGGTC 59.602 52.381 0.00 0.00 0.00 4.79
538 572 1.131126 CACAGCATTCCTTGTAAGCGG 59.869 52.381 0.00 0.00 0.00 5.52
554 588 3.376546 GCCTTCTTTCCAGCTTATCACAG 59.623 47.826 0.00 0.00 0.00 3.66
564 598 6.261826 CACCAATATCTTAGCCTTCTTTCCAG 59.738 42.308 0.00 0.00 0.00 3.86
584 618 3.647636 TCATGGAAACCCTTTTCACCAA 58.352 40.909 0.00 0.00 42.72 3.67
606 640 8.829373 AGGATTAATCTCTTTTGCTTACCATT 57.171 30.769 14.95 0.00 0.00 3.16
627 661 1.975680 ACCCTCGTGTTTGTGTAGGAT 59.024 47.619 0.00 0.00 0.00 3.24
730 782 5.289083 TCCCAAACCAATTCTCAAAAAGG 57.711 39.130 0.00 0.00 0.00 3.11
731 783 8.900983 TTATTCCCAAACCAATTCTCAAAAAG 57.099 30.769 0.00 0.00 0.00 2.27
765 817 2.979813 CTGGGCGATTTTCGTTTTTCTG 59.020 45.455 0.00 0.00 42.81 3.02
767 819 1.719246 GCTGGGCGATTTTCGTTTTTC 59.281 47.619 0.00 0.00 42.81 2.29
832 899 2.568090 CATCGTGGGGTTTGCTGC 59.432 61.111 0.00 0.00 0.00 5.25
871 938 0.040204 CTTCCAATTGGGCTGGGACT 59.960 55.000 24.29 0.00 36.21 3.85
920 987 2.296190 GGTGGGGATGGATTTTTATCGC 59.704 50.000 0.00 0.00 36.03 4.58
933 1000 1.125093 TGTCTGTTCGTGGTGGGGAT 61.125 55.000 0.00 0.00 0.00 3.85
934 1001 1.338890 TTGTCTGTTCGTGGTGGGGA 61.339 55.000 0.00 0.00 0.00 4.81
935 1002 1.147376 TTGTCTGTTCGTGGTGGGG 59.853 57.895 0.00 0.00 0.00 4.96
936 1003 0.462937 TGTTGTCTGTTCGTGGTGGG 60.463 55.000 0.00 0.00 0.00 4.61
954 1021 6.019779 TCGTTTGGGGAAATCTTATTGTTG 57.980 37.500 0.00 0.00 0.00 3.33
957 1024 6.019779 TGTTCGTTTGGGGAAATCTTATTG 57.980 37.500 0.00 0.00 0.00 1.90
960 1027 6.466885 TTTTGTTCGTTTGGGGAAATCTTA 57.533 33.333 0.00 0.00 0.00 2.10
971 1042 6.237201 CCGAGAGTTTTCTTTTTGTTCGTTTG 60.237 38.462 0.00 0.00 32.53 2.93
980 1051 1.607148 CCGCCCGAGAGTTTTCTTTTT 59.393 47.619 0.00 0.00 32.53 1.94
1014 1086 2.337061 CGAGCTCGATTCGATTCGATTC 59.663 50.000 32.06 23.90 46.16 2.52
1015 1087 2.031944 TCGAGCTCGATTCGATTCGATT 60.032 45.455 33.84 19.63 46.16 3.34
1016 1088 1.531578 TCGAGCTCGATTCGATTCGAT 59.468 47.619 33.84 16.60 46.16 3.59
1017 1089 0.935196 TCGAGCTCGATTCGATTCGA 59.065 50.000 33.84 27.40 43.65 3.71
1175 1247 2.222729 CCGCAGCACAACGAATTACTAC 60.223 50.000 0.00 0.00 0.00 2.73
1176 1248 1.996898 CCGCAGCACAACGAATTACTA 59.003 47.619 0.00 0.00 0.00 1.82
1177 1249 0.796312 CCGCAGCACAACGAATTACT 59.204 50.000 0.00 0.00 0.00 2.24
1178 1250 0.793104 GCCGCAGCACAACGAATTAC 60.793 55.000 0.00 0.00 39.53 1.89
1179 1251 1.499949 GCCGCAGCACAACGAATTA 59.500 52.632 0.00 0.00 39.53 1.40
1191 1263 1.958205 GATGGAGGAATCGCCGCAG 60.958 63.158 0.00 0.00 43.43 5.18
1253 1325 2.777845 CGTAGCTGCGCACAAATTATTG 59.222 45.455 12.24 0.00 42.46 1.90
1280 1352 2.034939 CAGCATCCAAAGCACAGAAACA 59.965 45.455 0.00 0.00 0.00 2.83
1328 1402 0.899720 AAACCCTAGAATCGGACGCA 59.100 50.000 0.00 0.00 0.00 5.24
1359 1433 3.714798 TGTAAGGTCCTGGACTTTTCACT 59.285 43.478 26.36 11.69 33.96 3.41
1396 1470 5.531122 ACGGCTGCTCTACTATTTAATCA 57.469 39.130 0.00 0.00 0.00 2.57
1418 1492 9.998106 GGAAATAGTGATAAGAGCAGGTTATTA 57.002 33.333 0.00 0.00 0.00 0.98
1485 1559 1.676006 CAGATTGTTCCAATACCCGGC 59.324 52.381 0.00 0.00 0.00 6.13
1487 1561 2.682856 CCACAGATTGTTCCAATACCCG 59.317 50.000 0.00 0.00 0.00 5.28
1492 1566 5.337009 GCAGATTTCCACAGATTGTTCCAAT 60.337 40.000 0.00 0.00 0.00 3.16
1522 1608 7.824704 AATTTAGCTATCTATCGCTGACATG 57.175 36.000 0.00 0.00 37.05 3.21
1523 1609 8.744652 ACTAATTTAGCTATCTATCGCTGACAT 58.255 33.333 3.28 0.00 37.05 3.06
1524 1610 8.112016 ACTAATTTAGCTATCTATCGCTGACA 57.888 34.615 3.28 0.00 37.05 3.58
1525 1611 8.973835 AACTAATTTAGCTATCTATCGCTGAC 57.026 34.615 3.28 0.00 37.05 3.51
1526 1612 9.411801 CAAACTAATTTAGCTATCTATCGCTGA 57.588 33.333 3.28 0.00 37.05 4.26
1527 1613 9.411801 TCAAACTAATTTAGCTATCTATCGCTG 57.588 33.333 3.28 0.00 37.05 5.18
1528 1614 9.982651 TTCAAACTAATTTAGCTATCTATCGCT 57.017 29.630 3.28 0.00 40.15 4.93
1533 1619 9.884636 TGCAGTTCAAACTAATTTAGCTATCTA 57.115 29.630 3.28 0.00 37.08 1.98
1667 1781 6.183360 ACCAACACAATACAGCCCTAGTATAG 60.183 42.308 0.00 0.00 38.80 1.31
1687 1801 1.799258 CTCCACCAAGCAGCACCAAC 61.799 60.000 0.00 0.00 0.00 3.77
1744 1859 9.926158 TCTGCACATATGTAAATTCAACAAAAT 57.074 25.926 8.32 0.00 0.00 1.82
1870 1986 6.073276 TGGAACAAATACATCAACAAGTCTCG 60.073 38.462 0.00 0.00 31.92 4.04
1919 2035 4.103357 GAGTAGAATCTAGCGCGAAACAA 58.897 43.478 12.10 0.00 0.00 2.83
2039 2155 4.594970 ACTATGGTCCGGATAGATCAGAG 58.405 47.826 15.87 13.54 41.11 3.35
2055 2171 0.249741 CCCGTTTCCCGCTACTATGG 60.250 60.000 0.00 0.00 34.38 2.74
2065 2181 1.078918 CTACCGTTCCCCGTTTCCC 60.079 63.158 0.00 0.00 33.66 3.97
2116 2232 1.041447 ACCTCGTTCCCGAATCCGAT 61.041 55.000 0.00 0.00 43.69 4.18
2190 2306 1.630369 CTGTTGGATCCTGGAACCTGA 59.370 52.381 21.89 9.51 0.00 3.86
2201 2317 1.606668 TCACGTTTTGGCTGTTGGATC 59.393 47.619 0.00 0.00 0.00 3.36
2218 2334 3.002348 GGCGTGAGTAAATTATGCCTCAC 59.998 47.826 10.45 10.45 46.49 3.51
2219 2335 3.202906 GGCGTGAGTAAATTATGCCTCA 58.797 45.455 0.00 0.00 42.00 3.86
2284 2400 7.836685 TGCTGTTAATGGATCCCTTGTAATTAA 59.163 33.333 9.90 8.74 0.00 1.40
2290 2406 3.737559 TGCTGTTAATGGATCCCTTGT 57.262 42.857 9.90 0.00 0.00 3.16
2312 2428 1.450312 CCCTGACGGTCAGCATTCC 60.450 63.158 28.50 0.00 42.98 3.01
2352 2468 2.483188 GGTATCATGGGTCGAGGAACAC 60.483 54.545 0.00 0.00 0.00 3.32
2353 2469 1.760613 GGTATCATGGGTCGAGGAACA 59.239 52.381 0.00 0.00 0.00 3.18
2376 2492 2.502577 GGGTACGATGAACCCGGG 59.497 66.667 22.25 22.25 46.95 5.73
2493 2609 2.840576 TGGGAACAAGGAACGGGG 59.159 61.111 0.00 0.00 37.44 5.73
2646 2763 2.526304 AGCACGAAACTGCAGTAAGA 57.474 45.000 22.01 0.00 39.86 2.10
2884 3002 6.563037 AGGCATCTGATGATTAGCTGATAT 57.437 37.500 21.30 0.00 30.98 1.63
2896 3014 7.869429 ACAAAGTAAAAGAAAAGGCATCTGATG 59.131 33.333 13.26 13.26 0.00 3.07
2969 3087 4.534103 AGCATAGGCCCCAAATTACAAAAA 59.466 37.500 0.00 0.00 42.56 1.94
3205 3323 6.136155 ACCAATCAAGATAAAGGGTAATGGG 58.864 40.000 0.00 0.00 0.00 4.00
3520 3638 2.808543 CACTTGTAACTTCCAGGTGAGC 59.191 50.000 0.00 0.00 41.04 4.26
3817 3935 8.519526 CAGCCTTCATAACTTACAAAATAACCA 58.480 33.333 0.00 0.00 0.00 3.67
3820 3938 7.123547 CCCCAGCCTTCATAACTTACAAAATAA 59.876 37.037 0.00 0.00 0.00 1.40
3873 3991 4.716784 ACAGAGACTTAAGCCATATGACCA 59.283 41.667 3.65 0.00 0.00 4.02
4017 4135 5.801350 TGACAACTCAACAACTTCAGAAG 57.199 39.130 8.77 8.77 0.00 2.85
4087 4205 4.202141 GCAGATACAGCCAAATGCCATTAA 60.202 41.667 0.00 0.00 42.71 1.40
4177 4295 4.457949 CAGGCAAAGGTTATTTAAGTCGGT 59.542 41.667 0.00 0.00 0.00 4.69
4231 4349 5.812127 GTGGAATTTCAGAAATTATGGGTGC 59.188 40.000 19.21 6.84 40.97 5.01
4322 4701 7.074507 TGTAAACTGAAGCGACAACTAAAAA 57.925 32.000 0.00 0.00 0.00 1.94
4580 4959 5.880901 ACCAATTCACTTACCACATCTTCT 58.119 37.500 0.00 0.00 0.00 2.85
4630 5009 4.291249 TGGGAGGTATTCAAGGCTAACTTT 59.709 41.667 0.00 0.00 37.29 2.66
4646 5706 1.803453 AATGGTGGCACATGGGAGGT 61.803 55.000 20.82 0.00 44.52 3.85
4820 5956 0.467290 TGGGGCAAGAAGAACACCAC 60.467 55.000 0.00 0.00 0.00 4.16
4831 5967 3.716601 CCGCTAATTAAAATGGGGCAAG 58.283 45.455 0.00 0.00 0.00 4.01
4931 6067 2.290514 CCAGTCAGAACACATGACCCAT 60.291 50.000 0.00 0.00 46.68 4.00
5138 6274 7.442666 GGAGATAGTTTTAGCCAAATAGTGAGG 59.557 40.741 0.00 0.00 0.00 3.86
5186 6322 3.952323 ACTGCTCTAGCCAAATACTCGTA 59.048 43.478 0.00 0.00 41.18 3.43
5187 6323 2.761208 ACTGCTCTAGCCAAATACTCGT 59.239 45.455 0.00 0.00 41.18 4.18
5188 6324 3.067461 AGACTGCTCTAGCCAAATACTCG 59.933 47.826 0.00 0.00 41.18 4.18
5189 6325 4.664150 AGACTGCTCTAGCCAAATACTC 57.336 45.455 0.00 0.00 41.18 2.59
5190 6326 6.325028 TCATTAGACTGCTCTAGCCAAATACT 59.675 38.462 0.00 0.00 41.18 2.12
5191 6327 6.422400 GTCATTAGACTGCTCTAGCCAAATAC 59.578 42.308 0.00 0.00 41.64 1.89
5213 6349 2.116238 GATAGGCCAGTTAGGGTGTCA 58.884 52.381 5.01 0.00 38.09 3.58
5226 6362 4.092116 AGGAAGCAATTGTAGATAGGCC 57.908 45.455 7.40 0.00 0.00 5.19
5257 6393 3.058432 TCGAAGTCTAAGTGAACAGTCCG 60.058 47.826 0.00 0.00 0.00 4.79
5458 6597 6.426328 CAGATTTATTCCTCATAGTCCACTGC 59.574 42.308 0.00 0.00 0.00 4.40
5461 6600 6.831976 ACCAGATTTATTCCTCATAGTCCAC 58.168 40.000 0.00 0.00 0.00 4.02
5525 6664 1.078567 CAAGCTCTGACAGAGGCCC 60.079 63.158 29.26 15.59 42.54 5.80
5611 6750 8.137437 CCACAAAATTGAGACTAAACATTGAGT 58.863 33.333 0.00 0.00 0.00 3.41
5637 6776 2.350772 CGGGCAGTGAAAACATGACTTC 60.351 50.000 0.00 2.01 0.00 3.01
5657 8816 4.868450 TGAAACTGTGGTGTAAAACTCG 57.132 40.909 0.00 0.00 0.00 4.18
5705 8864 4.395231 GCCAAGTACTTGTATTGAACTCCC 59.605 45.833 29.05 2.01 38.85 4.30
5775 8938 2.975410 TCAGAAGCAGCATTTCAACG 57.025 45.000 0.00 0.00 0.00 4.10
5817 8980 7.308049 GGTGAAGAAATTAAGACAAGACACCTC 60.308 40.741 0.00 0.00 39.46 3.85
5849 9012 3.417275 TTTTTGCGTGTGTGGGCCG 62.417 57.895 0.00 0.00 0.00 6.13
5886 9049 7.448469 ACTTCTATAAGGACAACAAAATGCTGT 59.552 33.333 0.00 0.00 37.01 4.40
5894 9057 7.093465 CCACTAGGACTTCTATAAGGACAACAA 60.093 40.741 0.00 0.00 37.01 2.83
5895 9058 6.380274 CCACTAGGACTTCTATAAGGACAACA 59.620 42.308 0.00 0.00 37.01 3.33
5896 9059 6.683360 GCCACTAGGACTTCTATAAGGACAAC 60.683 46.154 0.00 0.00 36.89 3.32
5928 9103 8.156820 TCAAAGAAGATGTGACCAAATCTCTAA 58.843 33.333 3.36 0.00 31.88 2.10
5929 9104 7.679783 TCAAAGAAGATGTGACCAAATCTCTA 58.320 34.615 3.36 0.00 31.88 2.43
5938 9113 6.811170 TGTTTTGTTTCAAAGAAGATGTGACC 59.189 34.615 0.00 0.00 0.00 4.02
5944 9119 9.434420 TGACAATTGTTTTGTTTCAAAGAAGAT 57.566 25.926 13.36 0.00 31.96 2.40
5949 9124 7.545265 TCTCCTGACAATTGTTTTGTTTCAAAG 59.455 33.333 13.36 5.07 31.96 2.77
5982 9157 3.511934 AGCAACAAGGTTCTAGAGACGAT 59.488 43.478 0.00 0.00 0.00 3.73
5984 9159 2.989840 CAGCAACAAGGTTCTAGAGACG 59.010 50.000 0.00 0.00 0.00 4.18
5991 9166 1.884579 CATCAGCAGCAACAAGGTTCT 59.115 47.619 0.00 0.00 0.00 3.01
6014 9189 1.506309 ATGAAACTCGCAGCAACGCA 61.506 50.000 0.00 0.00 0.00 5.24
6040 9215 7.357951 TGTCCTCAATTGTTTTGTTTCAAAC 57.642 32.000 5.13 0.00 0.00 2.93
6047 9222 7.823799 ACAGAAATTTGTCCTCAATTGTTTTGT 59.176 29.630 5.13 0.00 33.32 2.83
6092 9269 6.834168 TTCTCCTGACAACTCTTTTGTTTT 57.166 33.333 0.00 0.00 31.96 2.43
6101 9278 5.278512 GGGACAAAATTTCTCCTGACAACTC 60.279 44.000 12.44 0.00 0.00 3.01
6124 9301 0.253327 GCAACTAGGGTTCCAGAGGG 59.747 60.000 0.00 0.00 32.73 4.30
6125 9302 1.065854 CAGCAACTAGGGTTCCAGAGG 60.066 57.143 0.00 0.00 32.73 3.69
6165 9357 3.242543 CGTTTTCATATCTGAGCAGTGGC 60.243 47.826 0.00 0.00 41.61 5.01
6281 9473 0.322277 AACTGGGACATCAGCTGCTG 60.322 55.000 23.31 23.31 38.20 4.41
6282 9474 0.403271 AAACTGGGACATCAGCTGCT 59.597 50.000 9.47 0.00 38.20 4.24
6284 9476 2.027377 AGAGAAACTGGGACATCAGCTG 60.027 50.000 7.63 7.63 38.20 4.24
6286 9478 2.777832 AGAGAAACTGGGACATCAGC 57.222 50.000 0.00 0.00 38.20 4.26
6313 9505 0.039708 GCAAGCTGTGAGTTGGCTTC 60.040 55.000 0.00 0.00 43.28 3.86
6340 9532 7.399191 TCATGGGTGATATCTATTAGTACCACC 59.601 40.741 3.98 0.00 41.35 4.61
6343 9535 9.256228 TCTTCATGGGTGATATCTATTAGTACC 57.744 37.037 3.98 1.04 33.56 3.34
6349 9541 9.950496 GTAATGTCTTCATGGGTGATATCTATT 57.050 33.333 3.98 0.00 33.56 1.73
6350 9542 9.104713 TGTAATGTCTTCATGGGTGATATCTAT 57.895 33.333 3.98 0.00 33.56 1.98
6351 9543 8.491045 TGTAATGTCTTCATGGGTGATATCTA 57.509 34.615 3.98 0.00 33.56 1.98
6367 9559 6.424509 CACATGTGGCAAATTTTGTAATGTCT 59.575 34.615 18.51 0.00 0.00 3.41
6492 9685 5.071115 CACCAATTTAACCAGGAAAAAGGGA 59.929 40.000 0.00 0.00 0.00 4.20
6495 9688 4.754618 GCCACCAATTTAACCAGGAAAAAG 59.245 41.667 0.00 0.00 0.00 2.27
6500 9693 2.243810 GTGCCACCAATTTAACCAGGA 58.756 47.619 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.