Multiple sequence alignment - TraesCS7A01G321400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G321400 chr7A 100.000 2477 0 0 1 2477 464236692 464239168 0.000000e+00 4575.0
1 TraesCS7A01G321400 chr7A 90.179 112 6 4 101 209 56199493 56199384 9.240000e-30 141.0
2 TraesCS7A01G321400 chr7A 100.000 37 0 0 2 38 464236734 464236770 4.420000e-08 69.4
3 TraesCS7A01G321400 chr3A 97.752 2180 30 8 299 2477 58635065 58632904 0.000000e+00 3736.0
4 TraesCS7A01G321400 chr3A 86.968 1573 181 13 307 1864 159967054 159965491 0.000000e+00 1748.0
5 TraesCS7A01G321400 chr3A 90.119 587 53 5 1893 2477 159965501 159964918 0.000000e+00 758.0
6 TraesCS7A01G321400 chr3A 100.000 209 0 0 1 209 95543476 95543268 1.070000e-103 387.0
7 TraesCS7A01G321400 chr3A 100.000 37 0 0 2 38 95543434 95543398 4.420000e-08 69.4
8 TraesCS7A01G321400 chr4A 97.230 2166 51 7 317 2477 701695065 701692904 0.000000e+00 3659.0
9 TraesCS7A01G321400 chr4A 89.104 1496 143 12 334 1817 697340877 697339390 0.000000e+00 1842.0
10 TraesCS7A01G321400 chr3B 88.428 2195 201 32 307 2477 581256440 581258605 0.000000e+00 2597.0
11 TraesCS7A01G321400 chr3B 89.565 115 7 4 101 212 697163679 697163567 9.240000e-30 141.0
12 TraesCS7A01G321400 chr3B 90.179 112 6 4 101 209 736483245 736483354 9.240000e-30 141.0
13 TraesCS7A01G321400 chr2B 88.412 2192 196 31 309 2477 361635796 361637952 0.000000e+00 2588.0
14 TraesCS7A01G321400 chr1B 88.605 1527 150 15 307 1817 50118815 50120333 0.000000e+00 1834.0
15 TraesCS7A01G321400 chr1B 88.225 1189 107 16 309 1477 49436449 49437624 0.000000e+00 1389.0
16 TraesCS7A01G321400 chr1B 89.141 1013 79 16 1473 2477 49440014 49441003 0.000000e+00 1232.0
17 TraesCS7A01G321400 chr2A 91.226 1117 87 7 1368 2477 661302927 661304039 0.000000e+00 1509.0
18 TraesCS7A01G321400 chr5A 87.957 1013 90 17 1473 2477 144937169 144936181 0.000000e+00 1166.0
19 TraesCS7A01G321400 chr5A 90.774 607 48 4 880 1480 144940195 144939591 0.000000e+00 804.0
20 TraesCS7A01G321400 chr5A 100.000 209 0 0 1 209 439830950 439830742 1.070000e-103 387.0
21 TraesCS7A01G321400 chr5A 83.060 183 18 5 37 209 74852605 74852426 1.190000e-33 154.0
22 TraesCS7A01G321400 chr5A 97.674 43 1 0 37 79 439830955 439830913 9.500000e-10 75.0
23 TraesCS7A01G321400 chr5A 100.000 37 0 0 2 38 439830908 439830872 4.420000e-08 69.4
24 TraesCS7A01G321400 chr6B 89.750 800 71 8 1683 2477 126253607 126252814 0.000000e+00 1013.0
25 TraesCS7A01G321400 chr6B 100.000 209 0 0 1 209 232751982 232752190 1.070000e-103 387.0
26 TraesCS7A01G321400 chr6B 100.000 37 0 0 2 38 232752024 232752060 4.420000e-08 69.4
27 TraesCS7A01G321400 chr4B 99.048 210 1 1 1 209 1766261 1766470 2.330000e-100 375.0
28 TraesCS7A01G321400 chr4B 100.000 37 0 0 2 38 1766303 1766339 4.420000e-08 69.4
29 TraesCS7A01G321400 chr1A 92.135 178 7 5 37 209 529421472 529421647 6.840000e-61 244.0
30 TraesCS7A01G321400 chr1A 90.179 112 6 4 101 209 244500127 244500018 9.240000e-30 141.0
31 TraesCS7A01G321400 chr1D 89.503 181 9 5 37 209 251298466 251298644 1.150000e-53 220.0
32 TraesCS7A01G321400 chr1D 84.239 184 15 6 37 209 287969500 287969320 1.520000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G321400 chr7A 464236692 464239168 2476 False 2322.2 4575 100.0000 1 2477 2 chr7A.!!$F1 2476
1 TraesCS7A01G321400 chr3A 58632904 58635065 2161 True 3736.0 3736 97.7520 299 2477 1 chr3A.!!$R1 2178
2 TraesCS7A01G321400 chr3A 159964918 159967054 2136 True 1253.0 1748 88.5435 307 2477 2 chr3A.!!$R3 2170
3 TraesCS7A01G321400 chr4A 701692904 701695065 2161 True 3659.0 3659 97.2300 317 2477 1 chr4A.!!$R2 2160
4 TraesCS7A01G321400 chr4A 697339390 697340877 1487 True 1842.0 1842 89.1040 334 1817 1 chr4A.!!$R1 1483
5 TraesCS7A01G321400 chr3B 581256440 581258605 2165 False 2597.0 2597 88.4280 307 2477 1 chr3B.!!$F1 2170
6 TraesCS7A01G321400 chr2B 361635796 361637952 2156 False 2588.0 2588 88.4120 309 2477 1 chr2B.!!$F1 2168
7 TraesCS7A01G321400 chr1B 50118815 50120333 1518 False 1834.0 1834 88.6050 307 1817 1 chr1B.!!$F1 1510
8 TraesCS7A01G321400 chr1B 49436449 49441003 4554 False 1310.5 1389 88.6830 309 2477 2 chr1B.!!$F2 2168
9 TraesCS7A01G321400 chr2A 661302927 661304039 1112 False 1509.0 1509 91.2260 1368 2477 1 chr2A.!!$F1 1109
10 TraesCS7A01G321400 chr5A 144936181 144940195 4014 True 985.0 1166 89.3655 880 2477 2 chr5A.!!$R2 1597
11 TraesCS7A01G321400 chr6B 126252814 126253607 793 True 1013.0 1013 89.7500 1683 2477 1 chr6B.!!$R1 794

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 189 0.177141 GGCACGTGGAGCAGGTTATA 59.823 55.000 18.88 0.0 29.69 0.98 F
270 271 0.179045 GGCACGGGCACATCTCTATT 60.179 55.000 13.89 0.0 43.71 1.73 F
387 393 1.142262 ACCCGCAGTCCTTTGTAAGTT 59.858 47.619 0.00 0.0 0.00 2.66 F
1155 1194 1.210478 GTGCTTCTTCTGGGATGGCTA 59.790 52.381 0.00 0.0 0.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1194 1.899814 TCAGCGTTGGTATCTCAGGTT 59.100 47.619 0.0 0.0 0.00 3.50 R
1362 1411 2.284263 TCGTCTTGCAGAGCAGTATG 57.716 50.000 0.0 0.0 40.61 2.39 R
1363 1412 2.482664 CCATCGTCTTGCAGAGCAGTAT 60.483 50.000 0.0 0.0 40.61 2.12 R
2442 7351 2.814336 CTGTTTAGGCTTCGCTTCCTTT 59.186 45.455 0.0 0.0 34.02 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.166984 TCAGGTGAGTTCATCATTATCTCC 57.833 41.667 0.00 0.00 40.92 3.71
26 27 5.901853 TCAGGTGAGTTCATCATTATCTCCT 59.098 40.000 0.00 0.00 40.92 3.69
27 28 6.385176 TCAGGTGAGTTCATCATTATCTCCTT 59.615 38.462 0.00 0.00 40.92 3.36
28 29 6.705381 CAGGTGAGTTCATCATTATCTCCTTC 59.295 42.308 0.00 0.00 40.92 3.46
29 30 6.385176 AGGTGAGTTCATCATTATCTCCTTCA 59.615 38.462 0.00 0.00 40.92 3.02
30 31 7.050377 GGTGAGTTCATCATTATCTCCTTCAA 58.950 38.462 0.00 0.00 40.92 2.69
31 32 7.011857 GGTGAGTTCATCATTATCTCCTTCAAC 59.988 40.741 0.00 0.00 40.92 3.18
32 33 7.011857 GTGAGTTCATCATTATCTCCTTCAACC 59.988 40.741 0.00 0.00 40.92 3.77
33 34 7.092712 TGAGTTCATCATTATCTCCTTCAACCT 60.093 37.037 0.00 0.00 31.12 3.50
34 35 7.052873 AGTTCATCATTATCTCCTTCAACCTG 58.947 38.462 0.00 0.00 0.00 4.00
35 36 5.371526 TCATCATTATCTCCTTCAACCTGC 58.628 41.667 0.00 0.00 0.00 4.85
36 37 4.156455 TCATTATCTCCTTCAACCTGCC 57.844 45.455 0.00 0.00 0.00 4.85
37 38 3.523157 TCATTATCTCCTTCAACCTGCCA 59.477 43.478 0.00 0.00 0.00 4.92
38 39 4.018506 TCATTATCTCCTTCAACCTGCCAA 60.019 41.667 0.00 0.00 0.00 4.52
39 40 2.503895 ATCTCCTTCAACCTGCCAAG 57.496 50.000 0.00 0.00 0.00 3.61
40 41 0.250901 TCTCCTTCAACCTGCCAAGC 60.251 55.000 0.00 0.00 0.00 4.01
41 42 1.228552 TCCTTCAACCTGCCAAGCC 60.229 57.895 0.00 0.00 0.00 4.35
42 43 1.531365 CCTTCAACCTGCCAAGCCA 60.531 57.895 0.00 0.00 0.00 4.75
43 44 0.901580 CCTTCAACCTGCCAAGCCAT 60.902 55.000 0.00 0.00 0.00 4.40
44 45 0.529378 CTTCAACCTGCCAAGCCATC 59.471 55.000 0.00 0.00 0.00 3.51
45 46 0.178967 TTCAACCTGCCAAGCCATCA 60.179 50.000 0.00 0.00 0.00 3.07
46 47 0.609957 TCAACCTGCCAAGCCATCAG 60.610 55.000 0.00 0.00 0.00 2.90
48 49 2.357836 CCTGCCAAGCCATCAGGT 59.642 61.111 0.00 0.00 41.76 4.00
49 50 2.050350 CCTGCCAAGCCATCAGGTG 61.050 63.158 0.00 0.00 41.76 4.00
50 51 1.001764 CTGCCAAGCCATCAGGTGA 60.002 57.895 0.00 0.00 37.19 4.02
51 52 1.001764 TGCCAAGCCATCAGGTGAG 60.002 57.895 0.00 0.00 37.19 3.51
52 53 1.001641 GCCAAGCCATCAGGTGAGT 60.002 57.895 0.00 0.00 37.19 3.41
53 54 0.610232 GCCAAGCCATCAGGTGAGTT 60.610 55.000 0.00 0.00 37.19 3.01
54 55 1.457346 CCAAGCCATCAGGTGAGTTC 58.543 55.000 0.00 0.00 37.19 3.01
55 56 1.271543 CCAAGCCATCAGGTGAGTTCA 60.272 52.381 0.00 0.00 37.19 3.18
56 57 2.619849 CCAAGCCATCAGGTGAGTTCAT 60.620 50.000 0.00 0.00 37.19 2.57
57 58 2.681848 CAAGCCATCAGGTGAGTTCATC 59.318 50.000 0.00 0.00 37.19 2.92
58 59 1.911357 AGCCATCAGGTGAGTTCATCA 59.089 47.619 0.00 0.00 37.19 3.07
59 60 2.508716 AGCCATCAGGTGAGTTCATCAT 59.491 45.455 0.00 0.00 40.92 2.45
60 61 3.053842 AGCCATCAGGTGAGTTCATCATT 60.054 43.478 0.00 0.00 40.92 2.57
61 62 4.164796 AGCCATCAGGTGAGTTCATCATTA 59.835 41.667 0.00 0.00 40.92 1.90
62 63 5.068636 GCCATCAGGTGAGTTCATCATTAT 58.931 41.667 0.00 0.00 40.92 1.28
63 64 5.180868 GCCATCAGGTGAGTTCATCATTATC 59.819 44.000 0.00 0.00 40.92 1.75
64 65 6.531923 CCATCAGGTGAGTTCATCATTATCT 58.468 40.000 0.00 0.00 40.92 1.98
65 66 6.649973 CCATCAGGTGAGTTCATCATTATCTC 59.350 42.308 0.00 0.00 40.92 2.75
66 67 6.166984 TCAGGTGAGTTCATCATTATCTCC 57.833 41.667 0.00 0.00 40.92 3.71
67 68 5.901853 TCAGGTGAGTTCATCATTATCTCCT 59.098 40.000 0.00 0.00 40.92 3.69
68 69 6.385176 TCAGGTGAGTTCATCATTATCTCCTT 59.615 38.462 0.00 0.00 40.92 3.36
69 70 6.705381 CAGGTGAGTTCATCATTATCTCCTTC 59.295 42.308 0.00 0.00 40.92 3.46
70 71 6.385176 AGGTGAGTTCATCATTATCTCCTTCA 59.615 38.462 0.00 0.00 40.92 3.02
71 72 7.050377 GGTGAGTTCATCATTATCTCCTTCAA 58.950 38.462 0.00 0.00 40.92 2.69
72 73 7.011857 GGTGAGTTCATCATTATCTCCTTCAAC 59.988 40.741 0.00 0.00 40.92 3.18
73 74 7.011857 GTGAGTTCATCATTATCTCCTTCAACC 59.988 40.741 0.00 0.00 40.92 3.77
74 75 7.092712 TGAGTTCATCATTATCTCCTTCAACCT 60.093 37.037 0.00 0.00 31.12 3.50
75 76 7.052873 AGTTCATCATTATCTCCTTCAACCTG 58.947 38.462 0.00 0.00 0.00 4.00
76 77 5.371526 TCATCATTATCTCCTTCAACCTGC 58.628 41.667 0.00 0.00 0.00 4.85
77 78 4.156455 TCATTATCTCCTTCAACCTGCC 57.844 45.455 0.00 0.00 0.00 4.85
78 79 3.523157 TCATTATCTCCTTCAACCTGCCA 59.477 43.478 0.00 0.00 0.00 4.92
79 80 4.166725 TCATTATCTCCTTCAACCTGCCAT 59.833 41.667 0.00 0.00 0.00 4.40
80 81 2.431954 ATCTCCTTCAACCTGCCATG 57.568 50.000 0.00 0.00 0.00 3.66
81 82 1.067295 TCTCCTTCAACCTGCCATGT 58.933 50.000 0.00 0.00 0.00 3.21
82 83 2.265367 TCTCCTTCAACCTGCCATGTA 58.735 47.619 0.00 0.00 0.00 2.29
83 84 2.846206 TCTCCTTCAACCTGCCATGTAT 59.154 45.455 0.00 0.00 0.00 2.29
84 85 4.037222 TCTCCTTCAACCTGCCATGTATA 58.963 43.478 0.00 0.00 0.00 1.47
85 86 4.473196 TCTCCTTCAACCTGCCATGTATAA 59.527 41.667 0.00 0.00 0.00 0.98
86 87 5.045213 TCTCCTTCAACCTGCCATGTATAAA 60.045 40.000 0.00 0.00 0.00 1.40
87 88 5.765510 TCCTTCAACCTGCCATGTATAAAT 58.234 37.500 0.00 0.00 0.00 1.40
88 89 6.194235 TCCTTCAACCTGCCATGTATAAATT 58.806 36.000 0.00 0.00 0.00 1.82
89 90 7.350382 TCCTTCAACCTGCCATGTATAAATTA 58.650 34.615 0.00 0.00 0.00 1.40
90 91 7.836685 TCCTTCAACCTGCCATGTATAAATTAA 59.163 33.333 0.00 0.00 0.00 1.40
91 92 8.474025 CCTTCAACCTGCCATGTATAAATTAAA 58.526 33.333 0.00 0.00 0.00 1.52
92 93 9.868277 CTTCAACCTGCCATGTATAAATTAAAA 57.132 29.630 0.00 0.00 0.00 1.52
138 139 9.511144 AAAACTTAACCTTATTTCTGACGTTTG 57.489 29.630 0.00 0.00 0.00 2.93
139 140 6.665465 ACTTAACCTTATTTCTGACGTTTGC 58.335 36.000 0.00 0.00 0.00 3.68
140 141 6.261381 ACTTAACCTTATTTCTGACGTTTGCA 59.739 34.615 0.00 0.00 0.00 4.08
141 142 5.508200 AACCTTATTTCTGACGTTTGCAA 57.492 34.783 0.00 0.00 0.00 4.08
142 143 5.508200 ACCTTATTTCTGACGTTTGCAAA 57.492 34.783 8.05 8.05 0.00 3.68
143 144 5.897050 ACCTTATTTCTGACGTTTGCAAAA 58.103 33.333 14.67 0.00 0.00 2.44
144 145 6.334202 ACCTTATTTCTGACGTTTGCAAAAA 58.666 32.000 14.67 2.88 0.00 1.94
145 146 6.983890 ACCTTATTTCTGACGTTTGCAAAAAT 59.016 30.769 14.67 10.48 0.00 1.82
146 147 7.494298 ACCTTATTTCTGACGTTTGCAAAAATT 59.506 29.630 14.67 0.31 0.00 1.82
147 148 7.793427 CCTTATTTCTGACGTTTGCAAAAATTG 59.207 33.333 14.67 6.92 0.00 2.32
148 149 5.462034 TTTCTGACGTTTGCAAAAATTGG 57.538 34.783 14.67 5.03 0.00 3.16
149 150 4.377839 TCTGACGTTTGCAAAAATTGGA 57.622 36.364 14.67 7.31 0.00 3.53
150 151 4.942852 TCTGACGTTTGCAAAAATTGGAT 58.057 34.783 14.67 0.00 0.00 3.41
151 152 5.355596 TCTGACGTTTGCAAAAATTGGATT 58.644 33.333 14.67 0.00 0.00 3.01
152 153 6.507900 TCTGACGTTTGCAAAAATTGGATTA 58.492 32.000 14.67 0.00 0.00 1.75
153 154 6.980978 TCTGACGTTTGCAAAAATTGGATTAA 59.019 30.769 14.67 0.00 0.00 1.40
154 155 7.492669 TCTGACGTTTGCAAAAATTGGATTAAA 59.507 29.630 14.67 0.00 0.00 1.52
155 156 7.974675 TGACGTTTGCAAAAATTGGATTAAAA 58.025 26.923 14.67 0.00 0.00 1.52
156 157 8.450964 TGACGTTTGCAAAAATTGGATTAAAAA 58.549 25.926 14.67 0.00 0.00 1.94
176 177 6.586868 AAAAATATTGCATAATGGCACGTG 57.413 33.333 12.28 12.28 44.86 4.49
177 178 3.921119 ATATTGCATAATGGCACGTGG 57.079 42.857 18.88 0.00 44.86 4.94
178 179 1.761449 ATTGCATAATGGCACGTGGA 58.239 45.000 18.88 0.00 44.86 4.02
179 180 1.093972 TTGCATAATGGCACGTGGAG 58.906 50.000 18.88 0.00 44.86 3.86
180 181 1.356624 GCATAATGGCACGTGGAGC 59.643 57.895 18.88 2.14 0.00 4.70
181 182 1.375853 GCATAATGGCACGTGGAGCA 61.376 55.000 18.88 0.00 0.00 4.26
182 183 0.659427 CATAATGGCACGTGGAGCAG 59.341 55.000 18.88 0.00 0.00 4.24
183 184 0.464373 ATAATGGCACGTGGAGCAGG 60.464 55.000 18.88 0.00 0.00 4.85
184 185 1.836999 TAATGGCACGTGGAGCAGGT 61.837 55.000 18.88 0.00 32.47 4.00
185 186 2.697147 AATGGCACGTGGAGCAGGTT 62.697 55.000 18.88 0.00 29.69 3.50
186 187 1.836999 ATGGCACGTGGAGCAGGTTA 61.837 55.000 18.88 0.00 29.69 2.85
187 188 1.078426 GGCACGTGGAGCAGGTTAT 60.078 57.895 18.88 0.00 29.69 1.89
188 189 0.177141 GGCACGTGGAGCAGGTTATA 59.823 55.000 18.88 0.00 29.69 0.98
189 190 1.202651 GGCACGTGGAGCAGGTTATAT 60.203 52.381 18.88 0.00 29.69 0.86
190 191 2.561569 GCACGTGGAGCAGGTTATATT 58.438 47.619 18.88 0.00 29.69 1.28
191 192 2.943033 GCACGTGGAGCAGGTTATATTT 59.057 45.455 18.88 0.00 29.69 1.40
192 193 3.002348 GCACGTGGAGCAGGTTATATTTC 59.998 47.826 18.88 0.00 29.69 2.17
193 194 4.188462 CACGTGGAGCAGGTTATATTTCA 58.812 43.478 7.95 0.00 29.69 2.69
194 195 4.816385 CACGTGGAGCAGGTTATATTTCAT 59.184 41.667 7.95 0.00 29.69 2.57
195 196 5.296780 CACGTGGAGCAGGTTATATTTCATT 59.703 40.000 7.95 0.00 29.69 2.57
196 197 5.885912 ACGTGGAGCAGGTTATATTTCATTT 59.114 36.000 0.00 0.00 0.00 2.32
197 198 6.377146 ACGTGGAGCAGGTTATATTTCATTTT 59.623 34.615 0.00 0.00 0.00 1.82
198 199 7.093945 ACGTGGAGCAGGTTATATTTCATTTTT 60.094 33.333 0.00 0.00 0.00 1.94
213 214 3.662290 TTTTTGCCCGGTGCTATCT 57.338 47.368 14.76 0.00 42.00 1.98
214 215 1.917872 TTTTTGCCCGGTGCTATCTT 58.082 45.000 14.76 0.00 42.00 2.40
215 216 2.791347 TTTTGCCCGGTGCTATCTTA 57.209 45.000 14.76 0.00 42.00 2.10
216 217 3.290948 TTTTGCCCGGTGCTATCTTAT 57.709 42.857 14.76 0.00 42.00 1.73
217 218 3.290948 TTTGCCCGGTGCTATCTTATT 57.709 42.857 14.76 0.00 42.00 1.40
218 219 4.425180 TTTGCCCGGTGCTATCTTATTA 57.575 40.909 14.76 0.00 42.00 0.98
219 220 4.634012 TTGCCCGGTGCTATCTTATTAT 57.366 40.909 14.76 0.00 42.00 1.28
220 221 3.937814 TGCCCGGTGCTATCTTATTATG 58.062 45.455 14.76 0.00 42.00 1.90
221 222 3.326588 TGCCCGGTGCTATCTTATTATGT 59.673 43.478 14.76 0.00 42.00 2.29
222 223 4.202419 TGCCCGGTGCTATCTTATTATGTT 60.202 41.667 14.76 0.00 42.00 2.71
223 224 5.012251 TGCCCGGTGCTATCTTATTATGTTA 59.988 40.000 14.76 0.00 42.00 2.41
224 225 5.935789 GCCCGGTGCTATCTTATTATGTTAA 59.064 40.000 0.00 0.00 36.87 2.01
225 226 6.598064 GCCCGGTGCTATCTTATTATGTTAAT 59.402 38.462 0.00 0.00 36.87 1.40
226 227 7.767198 GCCCGGTGCTATCTTATTATGTTAATA 59.233 37.037 0.00 0.00 36.87 0.98
227 228 9.832445 CCCGGTGCTATCTTATTATGTTAATAT 57.168 33.333 0.00 0.00 0.00 1.28
252 253 6.391227 AATATATTTTCCTCGTGGCAAAGG 57.609 37.500 10.26 10.26 32.38 3.11
253 254 0.603065 ATTTTCCTCGTGGCAAAGGC 59.397 50.000 11.43 0.00 32.38 4.35
254 255 0.753479 TTTTCCTCGTGGCAAAGGCA 60.753 50.000 11.43 0.00 43.71 4.75
263 264 3.683937 GCAAAGGCACGGGCACAT 61.684 61.111 13.89 0.00 43.71 3.21
264 265 2.568090 CAAAGGCACGGGCACATC 59.432 61.111 13.89 0.00 43.71 3.06
265 266 1.973281 CAAAGGCACGGGCACATCT 60.973 57.895 13.89 0.00 43.71 2.90
266 267 1.675641 AAAGGCACGGGCACATCTC 60.676 57.895 13.89 0.00 43.71 2.75
267 268 2.129555 AAAGGCACGGGCACATCTCT 62.130 55.000 13.89 0.00 43.71 3.10
268 269 1.264749 AAGGCACGGGCACATCTCTA 61.265 55.000 13.89 0.00 43.71 2.43
269 270 1.050988 AGGCACGGGCACATCTCTAT 61.051 55.000 13.89 0.00 43.71 1.98
270 271 0.179045 GGCACGGGCACATCTCTATT 60.179 55.000 13.89 0.00 43.71 1.73
271 272 1.668419 GCACGGGCACATCTCTATTT 58.332 50.000 3.77 0.00 40.72 1.40
272 273 1.599542 GCACGGGCACATCTCTATTTC 59.400 52.381 3.77 0.00 40.72 2.17
273 274 2.743183 GCACGGGCACATCTCTATTTCT 60.743 50.000 3.77 0.00 40.72 2.52
274 275 3.126831 CACGGGCACATCTCTATTTCTC 58.873 50.000 0.00 0.00 0.00 2.87
275 276 3.034635 ACGGGCACATCTCTATTTCTCT 58.965 45.455 0.00 0.00 0.00 3.10
276 277 3.068873 ACGGGCACATCTCTATTTCTCTC 59.931 47.826 0.00 0.00 0.00 3.20
277 278 3.553922 CGGGCACATCTCTATTTCTCTCC 60.554 52.174 0.00 0.00 0.00 3.71
278 279 3.244387 GGGCACATCTCTATTTCTCTCCC 60.244 52.174 0.00 0.00 0.00 4.30
279 280 3.645687 GGCACATCTCTATTTCTCTCCCT 59.354 47.826 0.00 0.00 0.00 4.20
280 281 4.835615 GGCACATCTCTATTTCTCTCCCTA 59.164 45.833 0.00 0.00 0.00 3.53
281 282 5.305644 GGCACATCTCTATTTCTCTCCCTAA 59.694 44.000 0.00 0.00 0.00 2.69
282 283 6.013812 GGCACATCTCTATTTCTCTCCCTAAT 60.014 42.308 0.00 0.00 0.00 1.73
283 284 7.096551 GCACATCTCTATTTCTCTCCCTAATC 58.903 42.308 0.00 0.00 0.00 1.75
284 285 7.039082 GCACATCTCTATTTCTCTCCCTAATCT 60.039 40.741 0.00 0.00 0.00 2.40
285 286 8.522830 CACATCTCTATTTCTCTCCCTAATCTC 58.477 40.741 0.00 0.00 0.00 2.75
286 287 8.456124 ACATCTCTATTTCTCTCCCTAATCTCT 58.544 37.037 0.00 0.00 0.00 3.10
287 288 8.960591 CATCTCTATTTCTCTCCCTAATCTCTC 58.039 40.741 0.00 0.00 0.00 3.20
288 289 7.466804 TCTCTATTTCTCTCCCTAATCTCTCC 58.533 42.308 0.00 0.00 0.00 3.71
289 290 7.297108 TCTCTATTTCTCTCCCTAATCTCTCCT 59.703 40.741 0.00 0.00 0.00 3.69
290 291 7.466804 TCTATTTCTCTCCCTAATCTCTCCTC 58.533 42.308 0.00 0.00 0.00 3.71
291 292 5.742562 TTTCTCTCCCTAATCTCTCCTCT 57.257 43.478 0.00 0.00 0.00 3.69
292 293 4.993705 TCTCTCCCTAATCTCTCCTCTC 57.006 50.000 0.00 0.00 0.00 3.20
293 294 4.577096 TCTCTCCCTAATCTCTCCTCTCT 58.423 47.826 0.00 0.00 0.00 3.10
294 295 4.597507 TCTCTCCCTAATCTCTCCTCTCTC 59.402 50.000 0.00 0.00 0.00 3.20
295 296 3.655777 TCTCCCTAATCTCTCCTCTCTCC 59.344 52.174 0.00 0.00 0.00 3.71
296 297 2.373836 TCCCTAATCTCTCCTCTCTCCG 59.626 54.545 0.00 0.00 0.00 4.63
297 298 2.107552 CCCTAATCTCTCCTCTCTCCGT 59.892 54.545 0.00 0.00 0.00 4.69
387 393 1.142262 ACCCGCAGTCCTTTGTAAGTT 59.858 47.619 0.00 0.00 0.00 2.66
1155 1194 1.210478 GTGCTTCTTCTGGGATGGCTA 59.790 52.381 0.00 0.00 0.00 3.93
1362 1411 3.626028 AGCGACAAAATTCAGGACAAC 57.374 42.857 0.00 0.00 0.00 3.32
1363 1412 2.948979 AGCGACAAAATTCAGGACAACA 59.051 40.909 0.00 0.00 0.00 3.33
1848 6731 5.662208 TCAAGCACATGATGGGGAATAAATT 59.338 36.000 0.00 0.00 0.00 1.82
2202 7088 1.075374 TGCATGGTAGGAGGCTTTTGT 59.925 47.619 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.732140 AGGAGATAATGATGAACTCACCTGATA 59.268 37.037 0.00 0.00 36.48 2.15
1 2 6.558014 AGGAGATAATGATGAACTCACCTGAT 59.442 38.462 0.00 0.00 36.48 2.90
2 3 5.901853 AGGAGATAATGATGAACTCACCTGA 59.098 40.000 0.00 0.00 36.48 3.86
3 4 6.172136 AGGAGATAATGATGAACTCACCTG 57.828 41.667 0.00 0.00 36.48 4.00
4 5 6.385176 TGAAGGAGATAATGATGAACTCACCT 59.615 38.462 0.00 0.00 36.48 4.00
5 6 6.586344 TGAAGGAGATAATGATGAACTCACC 58.414 40.000 0.00 0.00 36.48 4.02
6 7 7.011857 GGTTGAAGGAGATAATGATGAACTCAC 59.988 40.741 0.00 0.00 36.48 3.51
7 8 7.050377 GGTTGAAGGAGATAATGATGAACTCA 58.950 38.462 0.00 0.00 38.53 3.41
8 9 7.226325 CAGGTTGAAGGAGATAATGATGAACTC 59.774 40.741 0.00 0.00 0.00 3.01
9 10 7.052873 CAGGTTGAAGGAGATAATGATGAACT 58.947 38.462 0.00 0.00 0.00 3.01
10 11 6.238593 GCAGGTTGAAGGAGATAATGATGAAC 60.239 42.308 0.00 0.00 0.00 3.18
11 12 5.824624 GCAGGTTGAAGGAGATAATGATGAA 59.175 40.000 0.00 0.00 0.00 2.57
12 13 5.371526 GCAGGTTGAAGGAGATAATGATGA 58.628 41.667 0.00 0.00 0.00 2.92
13 14 4.518211 GGCAGGTTGAAGGAGATAATGATG 59.482 45.833 0.00 0.00 0.00 3.07
14 15 4.166725 TGGCAGGTTGAAGGAGATAATGAT 59.833 41.667 0.00 0.00 0.00 2.45
15 16 3.523157 TGGCAGGTTGAAGGAGATAATGA 59.477 43.478 0.00 0.00 0.00 2.57
16 17 3.889815 TGGCAGGTTGAAGGAGATAATG 58.110 45.455 0.00 0.00 0.00 1.90
17 18 4.530875 CTTGGCAGGTTGAAGGAGATAAT 58.469 43.478 0.00 0.00 0.00 1.28
18 19 3.873801 GCTTGGCAGGTTGAAGGAGATAA 60.874 47.826 0.00 0.00 0.00 1.75
19 20 2.356125 GCTTGGCAGGTTGAAGGAGATA 60.356 50.000 0.00 0.00 0.00 1.98
20 21 1.615384 GCTTGGCAGGTTGAAGGAGAT 60.615 52.381 0.00 0.00 0.00 2.75
21 22 0.250901 GCTTGGCAGGTTGAAGGAGA 60.251 55.000 0.00 0.00 0.00 3.71
22 23 1.246737 GGCTTGGCAGGTTGAAGGAG 61.247 60.000 0.00 0.00 0.00 3.69
23 24 1.228552 GGCTTGGCAGGTTGAAGGA 60.229 57.895 0.00 0.00 0.00 3.36
24 25 0.901580 ATGGCTTGGCAGGTTGAAGG 60.902 55.000 0.00 0.00 0.00 3.46
25 26 0.529378 GATGGCTTGGCAGGTTGAAG 59.471 55.000 0.00 0.00 0.00 3.02
26 27 0.178967 TGATGGCTTGGCAGGTTGAA 60.179 50.000 0.00 0.00 0.00 2.69
27 28 0.609957 CTGATGGCTTGGCAGGTTGA 60.610 55.000 0.00 0.00 0.00 3.18
28 29 1.601419 CCTGATGGCTTGGCAGGTTG 61.601 60.000 0.00 0.00 43.25 3.77
29 30 1.304713 CCTGATGGCTTGGCAGGTT 60.305 57.895 0.00 0.00 43.25 3.50
30 31 2.357836 CCTGATGGCTTGGCAGGT 59.642 61.111 0.00 0.00 43.25 4.00
32 33 1.001764 TCACCTGATGGCTTGGCAG 60.002 57.895 2.88 0.00 36.63 4.85
33 34 1.001764 CTCACCTGATGGCTTGGCA 60.002 57.895 0.00 0.00 36.63 4.92
34 35 0.610232 AACTCACCTGATGGCTTGGC 60.610 55.000 0.00 0.00 36.63 4.52
35 36 1.271543 TGAACTCACCTGATGGCTTGG 60.272 52.381 0.00 0.00 36.63 3.61
36 37 2.189594 TGAACTCACCTGATGGCTTG 57.810 50.000 0.00 0.00 36.63 4.01
37 38 2.306805 TGATGAACTCACCTGATGGCTT 59.693 45.455 0.00 0.00 36.63 4.35
38 39 1.911357 TGATGAACTCACCTGATGGCT 59.089 47.619 0.00 0.00 36.63 4.75
39 40 2.408271 TGATGAACTCACCTGATGGC 57.592 50.000 0.00 0.00 36.63 4.40
40 41 6.531923 AGATAATGATGAACTCACCTGATGG 58.468 40.000 0.00 0.00 36.48 3.51
41 42 6.649973 GGAGATAATGATGAACTCACCTGATG 59.350 42.308 0.00 0.00 36.48 3.07
42 43 6.558014 AGGAGATAATGATGAACTCACCTGAT 59.442 38.462 0.00 0.00 36.48 2.90
43 44 5.901853 AGGAGATAATGATGAACTCACCTGA 59.098 40.000 0.00 0.00 36.48 3.86
44 45 6.172136 AGGAGATAATGATGAACTCACCTG 57.828 41.667 0.00 0.00 36.48 4.00
45 46 6.385176 TGAAGGAGATAATGATGAACTCACCT 59.615 38.462 0.00 0.00 36.48 4.00
46 47 6.586344 TGAAGGAGATAATGATGAACTCACC 58.414 40.000 0.00 0.00 36.48 4.02
47 48 7.011857 GGTTGAAGGAGATAATGATGAACTCAC 59.988 40.741 0.00 0.00 36.48 3.51
48 49 7.050377 GGTTGAAGGAGATAATGATGAACTCA 58.950 38.462 0.00 0.00 38.53 3.41
49 50 7.226325 CAGGTTGAAGGAGATAATGATGAACTC 59.774 40.741 0.00 0.00 0.00 3.01
50 51 7.052873 CAGGTTGAAGGAGATAATGATGAACT 58.947 38.462 0.00 0.00 0.00 3.01
51 52 6.238593 GCAGGTTGAAGGAGATAATGATGAAC 60.239 42.308 0.00 0.00 0.00 3.18
52 53 5.824624 GCAGGTTGAAGGAGATAATGATGAA 59.175 40.000 0.00 0.00 0.00 2.57
53 54 5.371526 GCAGGTTGAAGGAGATAATGATGA 58.628 41.667 0.00 0.00 0.00 2.92
54 55 4.518211 GGCAGGTTGAAGGAGATAATGATG 59.482 45.833 0.00 0.00 0.00 3.07
55 56 4.166725 TGGCAGGTTGAAGGAGATAATGAT 59.833 41.667 0.00 0.00 0.00 2.45
56 57 3.523157 TGGCAGGTTGAAGGAGATAATGA 59.477 43.478 0.00 0.00 0.00 2.57
57 58 3.889815 TGGCAGGTTGAAGGAGATAATG 58.110 45.455 0.00 0.00 0.00 1.90
58 59 4.079558 ACATGGCAGGTTGAAGGAGATAAT 60.080 41.667 0.00 0.00 0.00 1.28
59 60 3.266772 ACATGGCAGGTTGAAGGAGATAA 59.733 43.478 0.00 0.00 0.00 1.75
60 61 2.846206 ACATGGCAGGTTGAAGGAGATA 59.154 45.455 0.00 0.00 0.00 1.98
61 62 1.637553 ACATGGCAGGTTGAAGGAGAT 59.362 47.619 0.00 0.00 0.00 2.75
62 63 1.067295 ACATGGCAGGTTGAAGGAGA 58.933 50.000 0.00 0.00 0.00 3.71
63 64 2.787473 TACATGGCAGGTTGAAGGAG 57.213 50.000 11.12 0.00 0.00 3.69
64 65 4.853468 TTATACATGGCAGGTTGAAGGA 57.147 40.909 11.12 0.00 0.00 3.36
65 66 6.469782 AATTTATACATGGCAGGTTGAAGG 57.530 37.500 11.12 0.00 0.00 3.46
66 67 9.868277 TTTTAATTTATACATGGCAGGTTGAAG 57.132 29.630 11.12 0.00 0.00 3.02
112 113 9.511144 CAAACGTCAGAAATAAGGTTAAGTTTT 57.489 29.630 0.00 0.00 0.00 2.43
113 114 7.646526 GCAAACGTCAGAAATAAGGTTAAGTTT 59.353 33.333 0.00 0.00 0.00 2.66
114 115 7.136772 GCAAACGTCAGAAATAAGGTTAAGTT 58.863 34.615 0.00 0.00 0.00 2.66
115 116 6.261381 TGCAAACGTCAGAAATAAGGTTAAGT 59.739 34.615 0.00 0.00 0.00 2.24
116 117 6.664515 TGCAAACGTCAGAAATAAGGTTAAG 58.335 36.000 0.00 0.00 0.00 1.85
117 118 6.621316 TGCAAACGTCAGAAATAAGGTTAA 57.379 33.333 0.00 0.00 0.00 2.01
118 119 6.621316 TTGCAAACGTCAGAAATAAGGTTA 57.379 33.333 0.00 0.00 0.00 2.85
119 120 5.508200 TTGCAAACGTCAGAAATAAGGTT 57.492 34.783 0.00 0.00 0.00 3.50
120 121 5.508200 TTTGCAAACGTCAGAAATAAGGT 57.492 34.783 8.05 0.00 0.00 3.50
121 122 6.820470 TTTTTGCAAACGTCAGAAATAAGG 57.180 33.333 12.39 0.00 0.00 2.69
122 123 7.793427 CCAATTTTTGCAAACGTCAGAAATAAG 59.207 33.333 12.39 4.14 30.96 1.73
123 124 7.492669 TCCAATTTTTGCAAACGTCAGAAATAA 59.507 29.630 12.39 0.00 30.96 1.40
124 125 6.980978 TCCAATTTTTGCAAACGTCAGAAATA 59.019 30.769 12.39 0.00 30.96 1.40
125 126 5.814705 TCCAATTTTTGCAAACGTCAGAAAT 59.185 32.000 12.39 4.28 32.00 2.17
126 127 5.171476 TCCAATTTTTGCAAACGTCAGAAA 58.829 33.333 12.39 1.74 0.00 2.52
127 128 4.748892 TCCAATTTTTGCAAACGTCAGAA 58.251 34.783 12.39 2.53 0.00 3.02
128 129 4.377839 TCCAATTTTTGCAAACGTCAGA 57.622 36.364 12.39 3.88 0.00 3.27
129 130 5.655893 AATCCAATTTTTGCAAACGTCAG 57.344 34.783 12.39 1.34 0.00 3.51
130 131 7.539712 TTTAATCCAATTTTTGCAAACGTCA 57.460 28.000 12.39 0.00 0.00 4.35
131 132 8.828029 TTTTTAATCCAATTTTTGCAAACGTC 57.172 26.923 12.39 0.00 0.00 4.34
153 154 5.523188 CCACGTGCCATTATGCAATATTTTT 59.477 36.000 10.91 0.00 44.11 1.94
154 155 5.049167 CCACGTGCCATTATGCAATATTTT 58.951 37.500 10.91 0.00 44.11 1.82
155 156 4.340666 TCCACGTGCCATTATGCAATATTT 59.659 37.500 10.91 0.00 44.11 1.40
156 157 3.888323 TCCACGTGCCATTATGCAATATT 59.112 39.130 10.91 0.00 44.11 1.28
157 158 3.485394 TCCACGTGCCATTATGCAATAT 58.515 40.909 10.91 0.00 44.11 1.28
158 159 2.877786 CTCCACGTGCCATTATGCAATA 59.122 45.455 10.91 0.00 44.11 1.90
159 160 1.677576 CTCCACGTGCCATTATGCAAT 59.322 47.619 10.91 0.00 44.11 3.56
160 161 1.093972 CTCCACGTGCCATTATGCAA 58.906 50.000 10.91 0.00 44.11 4.08
161 162 1.375853 GCTCCACGTGCCATTATGCA 61.376 55.000 10.91 0.00 39.37 3.96
162 163 1.356624 GCTCCACGTGCCATTATGC 59.643 57.895 10.91 2.19 0.00 3.14
163 164 0.659427 CTGCTCCACGTGCCATTATG 59.341 55.000 10.91 0.00 0.00 1.90
164 165 0.464373 CCTGCTCCACGTGCCATTAT 60.464 55.000 10.91 0.00 0.00 1.28
165 166 1.078497 CCTGCTCCACGTGCCATTA 60.078 57.895 10.91 0.00 0.00 1.90
166 167 2.360350 CCTGCTCCACGTGCCATT 60.360 61.111 10.91 0.00 0.00 3.16
167 168 1.836999 TAACCTGCTCCACGTGCCAT 61.837 55.000 10.91 0.00 0.00 4.40
168 169 1.836999 ATAACCTGCTCCACGTGCCA 61.837 55.000 10.91 5.83 0.00 4.92
169 170 0.177141 TATAACCTGCTCCACGTGCC 59.823 55.000 10.91 0.80 0.00 5.01
170 171 2.240493 ATATAACCTGCTCCACGTGC 57.760 50.000 10.91 0.00 0.00 5.34
171 172 4.188462 TGAAATATAACCTGCTCCACGTG 58.812 43.478 9.08 9.08 0.00 4.49
172 173 4.481368 TGAAATATAACCTGCTCCACGT 57.519 40.909 0.00 0.00 0.00 4.49
173 174 6.377327 AAATGAAATATAACCTGCTCCACG 57.623 37.500 0.00 0.00 0.00 4.94
200 201 3.939066 ACATAATAAGATAGCACCGGGC 58.061 45.455 6.32 6.61 45.30 6.13
201 202 9.832445 ATATTAACATAATAAGATAGCACCGGG 57.168 33.333 6.32 0.00 0.00 5.73
226 227 8.576442 CCTTTGCCACGAGGAAAATATATTTAT 58.424 33.333 11.07 1.23 41.70 1.40
227 228 7.469456 GCCTTTGCCACGAGGAAAATATATTTA 60.469 37.037 11.07 0.00 41.70 1.40
228 229 6.682861 GCCTTTGCCACGAGGAAAATATATTT 60.683 38.462 5.41 4.81 41.70 1.40
229 230 5.221244 GCCTTTGCCACGAGGAAAATATATT 60.221 40.000 5.41 0.00 41.70 1.28
230 231 4.278419 GCCTTTGCCACGAGGAAAATATAT 59.722 41.667 5.41 0.00 41.70 0.86
231 232 3.630312 GCCTTTGCCACGAGGAAAATATA 59.370 43.478 5.41 0.00 41.70 0.86
232 233 2.427095 GCCTTTGCCACGAGGAAAATAT 59.573 45.455 5.41 0.00 41.70 1.28
233 234 1.816224 GCCTTTGCCACGAGGAAAATA 59.184 47.619 5.41 0.00 41.70 1.40
234 235 0.603065 GCCTTTGCCACGAGGAAAAT 59.397 50.000 5.41 0.00 41.70 1.82
235 236 0.753479 TGCCTTTGCCACGAGGAAAA 60.753 50.000 1.86 3.56 40.28 2.29
236 237 1.152860 TGCCTTTGCCACGAGGAAA 60.153 52.632 1.86 0.00 36.89 3.13
237 238 1.896660 GTGCCTTTGCCACGAGGAA 60.897 57.895 1.86 0.00 36.89 3.36
238 239 2.281484 GTGCCTTTGCCACGAGGA 60.281 61.111 1.86 0.00 36.89 3.71
239 240 3.726517 CGTGCCTTTGCCACGAGG 61.727 66.667 8.08 0.00 41.40 4.63
240 241 3.726517 CCGTGCCTTTGCCACGAG 61.727 66.667 14.60 2.51 41.40 4.18
246 247 3.631487 GATGTGCCCGTGCCTTTGC 62.631 63.158 0.00 0.00 36.33 3.68
247 248 1.926511 GAGATGTGCCCGTGCCTTTG 61.927 60.000 0.00 0.00 36.33 2.77
248 249 1.675641 GAGATGTGCCCGTGCCTTT 60.676 57.895 0.00 0.00 36.33 3.11
249 250 1.264749 TAGAGATGTGCCCGTGCCTT 61.265 55.000 0.00 0.00 36.33 4.35
250 251 1.050988 ATAGAGATGTGCCCGTGCCT 61.051 55.000 0.00 0.00 36.33 4.75
251 252 0.179045 AATAGAGATGTGCCCGTGCC 60.179 55.000 0.00 0.00 36.33 5.01
252 253 1.599542 GAAATAGAGATGTGCCCGTGC 59.400 52.381 0.00 0.00 38.26 5.34
253 254 3.126831 GAGAAATAGAGATGTGCCCGTG 58.873 50.000 0.00 0.00 0.00 4.94
254 255 3.034635 AGAGAAATAGAGATGTGCCCGT 58.965 45.455 0.00 0.00 0.00 5.28
255 256 3.553922 GGAGAGAAATAGAGATGTGCCCG 60.554 52.174 0.00 0.00 0.00 6.13
256 257 3.244387 GGGAGAGAAATAGAGATGTGCCC 60.244 52.174 0.00 0.00 0.00 5.36
257 258 3.645687 AGGGAGAGAAATAGAGATGTGCC 59.354 47.826 0.00 0.00 0.00 5.01
258 259 4.953940 AGGGAGAGAAATAGAGATGTGC 57.046 45.455 0.00 0.00 0.00 4.57
259 260 8.421249 AGATTAGGGAGAGAAATAGAGATGTG 57.579 38.462 0.00 0.00 0.00 3.21
260 261 8.456124 AGAGATTAGGGAGAGAAATAGAGATGT 58.544 37.037 0.00 0.00 0.00 3.06
261 262 8.884124 AGAGATTAGGGAGAGAAATAGAGATG 57.116 38.462 0.00 0.00 0.00 2.90
262 263 8.116026 GGAGAGATTAGGGAGAGAAATAGAGAT 58.884 40.741 0.00 0.00 0.00 2.75
263 264 7.297108 AGGAGAGATTAGGGAGAGAAATAGAGA 59.703 40.741 0.00 0.00 0.00 3.10
264 265 7.470192 AGGAGAGATTAGGGAGAGAAATAGAG 58.530 42.308 0.00 0.00 0.00 2.43
265 266 7.297108 AGAGGAGAGATTAGGGAGAGAAATAGA 59.703 40.741 0.00 0.00 0.00 1.98
266 267 7.470192 AGAGGAGAGATTAGGGAGAGAAATAG 58.530 42.308 0.00 0.00 0.00 1.73
267 268 7.297108 AGAGAGGAGAGATTAGGGAGAGAAATA 59.703 40.741 0.00 0.00 0.00 1.40
268 269 6.104691 AGAGAGGAGAGATTAGGGAGAGAAAT 59.895 42.308 0.00 0.00 0.00 2.17
269 270 5.435041 AGAGAGGAGAGATTAGGGAGAGAAA 59.565 44.000 0.00 0.00 0.00 2.52
270 271 4.981647 AGAGAGGAGAGATTAGGGAGAGAA 59.018 45.833 0.00 0.00 0.00 2.87
271 272 4.577096 AGAGAGGAGAGATTAGGGAGAGA 58.423 47.826 0.00 0.00 0.00 3.10
272 273 4.263506 GGAGAGAGGAGAGATTAGGGAGAG 60.264 54.167 0.00 0.00 0.00 3.20
273 274 3.655777 GGAGAGAGGAGAGATTAGGGAGA 59.344 52.174 0.00 0.00 0.00 3.71
274 275 3.559171 CGGAGAGAGGAGAGATTAGGGAG 60.559 56.522 0.00 0.00 0.00 4.30
275 276 2.373836 CGGAGAGAGGAGAGATTAGGGA 59.626 54.545 0.00 0.00 0.00 4.20
276 277 2.107552 ACGGAGAGAGGAGAGATTAGGG 59.892 54.545 0.00 0.00 0.00 3.53
277 278 3.502123 ACGGAGAGAGGAGAGATTAGG 57.498 52.381 0.00 0.00 0.00 2.69
278 279 4.758165 GGTTACGGAGAGAGGAGAGATTAG 59.242 50.000 0.00 0.00 0.00 1.73
279 280 4.165565 TGGTTACGGAGAGAGGAGAGATTA 59.834 45.833 0.00 0.00 0.00 1.75
280 281 3.053544 TGGTTACGGAGAGAGGAGAGATT 60.054 47.826 0.00 0.00 0.00 2.40
281 282 2.510382 TGGTTACGGAGAGAGGAGAGAT 59.490 50.000 0.00 0.00 0.00 2.75
282 283 1.914108 TGGTTACGGAGAGAGGAGAGA 59.086 52.381 0.00 0.00 0.00 3.10
283 284 2.018515 GTGGTTACGGAGAGAGGAGAG 58.981 57.143 0.00 0.00 0.00 3.20
284 285 1.353358 TGTGGTTACGGAGAGAGGAGA 59.647 52.381 0.00 0.00 0.00 3.71
285 286 1.473278 GTGTGGTTACGGAGAGAGGAG 59.527 57.143 0.00 0.00 0.00 3.69
286 287 1.202964 TGTGTGGTTACGGAGAGAGGA 60.203 52.381 0.00 0.00 0.00 3.71
287 288 1.254026 TGTGTGGTTACGGAGAGAGG 58.746 55.000 0.00 0.00 0.00 3.69
288 289 3.254060 CAATGTGTGGTTACGGAGAGAG 58.746 50.000 0.00 0.00 0.00 3.20
289 290 2.611971 GCAATGTGTGGTTACGGAGAGA 60.612 50.000 0.00 0.00 0.00 3.10
290 291 1.732259 GCAATGTGTGGTTACGGAGAG 59.268 52.381 0.00 0.00 0.00 3.20
291 292 1.346395 AGCAATGTGTGGTTACGGAGA 59.654 47.619 0.00 0.00 32.77 3.71
292 293 1.808411 AGCAATGTGTGGTTACGGAG 58.192 50.000 0.00 0.00 32.77 4.63
293 294 2.264005 AAGCAATGTGTGGTTACGGA 57.736 45.000 0.00 0.00 46.06 4.69
387 393 3.026630 ACGAAGCGTTTTCTCAGATCA 57.973 42.857 0.00 0.00 36.35 2.92
594 604 0.912486 AACGGAGATGAAAGGAGGGG 59.088 55.000 0.00 0.00 0.00 4.79
1155 1194 1.899814 TCAGCGTTGGTATCTCAGGTT 59.100 47.619 0.00 0.00 0.00 3.50
1362 1411 2.284263 TCGTCTTGCAGAGCAGTATG 57.716 50.000 0.00 0.00 40.61 2.39
1363 1412 2.482664 CCATCGTCTTGCAGAGCAGTAT 60.483 50.000 0.00 0.00 40.61 2.12
2202 7088 3.507162 TCATCCAACTTGCCTTCAGAA 57.493 42.857 0.00 0.00 0.00 3.02
2442 7351 2.814336 CTGTTTAGGCTTCGCTTCCTTT 59.186 45.455 0.00 0.00 34.02 3.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.