Multiple sequence alignment - TraesCS7A01G321200
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G321200 | chr7A | 100.000 | 4908 | 0 | 0 | 1 | 4908 | 463755948 | 463760855 | 0.000000e+00 | 9064.0 |
1 | TraesCS7A01G321200 | chr7A | 93.590 | 78 | 5 | 0 | 4597 | 4674 | 463760476 | 463760553 | 3.100000e-22 | 117.0 |
2 | TraesCS7A01G321200 | chr7A | 93.590 | 78 | 5 | 0 | 4529 | 4606 | 463760544 | 463760621 | 3.100000e-22 | 117.0 |
3 | TraesCS7A01G321200 | chr7A | 88.158 | 76 | 2 | 3 | 2176 | 2251 | 486086985 | 486086917 | 3.150000e-12 | 84.2 |
4 | TraesCS7A01G321200 | chr7A | 88.406 | 69 | 3 | 3 | 2176 | 2244 | 7655855 | 7655918 | 1.460000e-10 | 78.7 |
5 | TraesCS7A01G321200 | chr7B | 92.034 | 2247 | 95 | 34 | 1 | 2179 | 417850030 | 417852260 | 0.000000e+00 | 3081.0 |
6 | TraesCS7A01G321200 | chr7B | 95.306 | 1470 | 53 | 8 | 2714 | 4178 | 417852866 | 417854324 | 0.000000e+00 | 2318.0 |
7 | TraesCS7A01G321200 | chr7B | 89.899 | 396 | 32 | 7 | 2355 | 2746 | 417852459 | 417852850 | 2.040000e-138 | 503.0 |
8 | TraesCS7A01G321200 | chr7B | 96.020 | 201 | 8 | 0 | 2243 | 2443 | 417852258 | 417852458 | 1.320000e-85 | 327.0 |
9 | TraesCS7A01G321200 | chr7B | 85.616 | 146 | 14 | 6 | 4626 | 4771 | 417854635 | 417854773 | 3.960000e-31 | 147.0 |
10 | TraesCS7A01G321200 | chr7B | 91.667 | 48 | 3 | 1 | 4558 | 4605 | 417854635 | 417854681 | 1.140000e-06 | 65.8 |
11 | TraesCS7A01G321200 | chr7D | 95.795 | 1831 | 65 | 7 | 2355 | 4180 | 406525284 | 406527107 | 0.000000e+00 | 2944.0 |
12 | TraesCS7A01G321200 | chr7D | 90.175 | 2117 | 85 | 48 | 1 | 2055 | 406522819 | 406524874 | 0.000000e+00 | 2643.0 |
13 | TraesCS7A01G321200 | chr7D | 82.821 | 390 | 63 | 4 | 4220 | 4605 | 406527220 | 406527609 | 3.640000e-91 | 346.0 |
14 | TraesCS7A01G321200 | chr7D | 94.527 | 201 | 11 | 0 | 2243 | 2443 | 406525083 | 406525283 | 1.330000e-80 | 311.0 |
15 | TraesCS7A01G321200 | chr7D | 80.242 | 248 | 20 | 17 | 4597 | 4843 | 406527533 | 406527752 | 5.080000e-35 | 159.0 |
16 | TraesCS7A01G321200 | chr7D | 92.381 | 105 | 6 | 2 | 2077 | 2179 | 406524981 | 406525085 | 1.100000e-31 | 148.0 |
17 | TraesCS7A01G321200 | chr7D | 98.000 | 50 | 1 | 0 | 4170 | 4219 | 406527121 | 406527170 | 2.430000e-13 | 87.9 |
18 | TraesCS7A01G321200 | chr7D | 86.957 | 69 | 4 | 3 | 2176 | 2244 | 6586283 | 6586346 | 6.810000e-09 | 73.1 |
19 | TraesCS7A01G321200 | chr7D | 83.544 | 79 | 6 | 5 | 2177 | 2254 | 156107702 | 156107630 | 3.170000e-07 | 67.6 |
20 | TraesCS7A01G321200 | chr6B | 93.939 | 66 | 4 | 0 | 4843 | 4908 | 171674127 | 171674062 | 3.130000e-17 | 100.0 |
21 | TraesCS7A01G321200 | chr6B | 91.304 | 69 | 6 | 0 | 4840 | 4908 | 414215257 | 414215189 | 1.450000e-15 | 95.3 |
22 | TraesCS7A01G321200 | chr1D | 93.939 | 66 | 4 | 0 | 4843 | 4908 | 164188111 | 164188176 | 3.130000e-17 | 100.0 |
23 | TraesCS7A01G321200 | chr5D | 92.537 | 67 | 4 | 1 | 4843 | 4908 | 450874544 | 450874610 | 1.450000e-15 | 95.3 |
24 | TraesCS7A01G321200 | chr4B | 93.651 | 63 | 4 | 0 | 4846 | 4908 | 472600917 | 472600855 | 1.450000e-15 | 95.3 |
25 | TraesCS7A01G321200 | chr3B | 92.537 | 67 | 4 | 1 | 4843 | 4908 | 370941892 | 370941958 | 1.450000e-15 | 95.3 |
26 | TraesCS7A01G321200 | chr3B | 92.537 | 67 | 4 | 1 | 4843 | 4908 | 373949028 | 373949094 | 1.450000e-15 | 95.3 |
27 | TraesCS7A01G321200 | chr3A | 92.424 | 66 | 5 | 0 | 4843 | 4908 | 114765818 | 114765753 | 1.450000e-15 | 95.3 |
28 | TraesCS7A01G321200 | chr3A | 86.111 | 72 | 5 | 1 | 2177 | 2248 | 594362728 | 594362662 | 6.810000e-09 | 73.1 |
29 | TraesCS7A01G321200 | chr2A | 92.424 | 66 | 5 | 0 | 4843 | 4908 | 552533139 | 552533074 | 1.450000e-15 | 95.3 |
30 | TraesCS7A01G321200 | chr2A | 88.571 | 70 | 1 | 2 | 2178 | 2245 | 421063774 | 421063710 | 1.460000e-10 | 78.7 |
31 | TraesCS7A01G321200 | chr5B | 100.000 | 48 | 0 | 0 | 2917 | 2964 | 558867072 | 558867119 | 6.770000e-14 | 89.8 |
32 | TraesCS7A01G321200 | chr5B | 88.235 | 68 | 3 | 3 | 2177 | 2244 | 321416916 | 321416978 | 5.270000e-10 | 76.8 |
33 | TraesCS7A01G321200 | chr3D | 88.571 | 70 | 1 | 2 | 2177 | 2244 | 450882692 | 450882756 | 1.460000e-10 | 78.7 |
34 | TraesCS7A01G321200 | chr2B | 85.526 | 76 | 2 | 2 | 2173 | 2244 | 373997322 | 373997392 | 2.450000e-08 | 71.3 |
35 | TraesCS7A01G321200 | chr1B | 84.722 | 72 | 8 | 2 | 4761 | 4832 | 531599545 | 531599477 | 8.820000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G321200 | chr7A | 463755948 | 463760855 | 4907 | False | 3099.333333 | 9064 | 95.726667 | 1 | 4908 | 3 | chr7A.!!$F2 | 4907 |
1 | TraesCS7A01G321200 | chr7B | 417850030 | 417854773 | 4743 | False | 1073.633333 | 3081 | 91.757000 | 1 | 4771 | 6 | chr7B.!!$F1 | 4770 |
2 | TraesCS7A01G321200 | chr7D | 406522819 | 406527752 | 4933 | False | 948.414286 | 2944 | 90.563000 | 1 | 4843 | 7 | chr7D.!!$F2 | 4842 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
388 | 417 | 1.076187 | TGCAGAAGGAGAGAGAGTGGA | 59.924 | 52.381 | 0.00 | 0.0 | 0.00 | 4.02 | F |
1853 | 1954 | 0.038021 | TGCAAGGAAGCACCAGCATA | 59.962 | 50.000 | 12.98 | 0.0 | 43.38 | 3.14 | F |
2066 | 2167 | 0.040157 | GCGACATGCTTTGCTGTTCA | 60.040 | 50.000 | 0.00 | 0.0 | 41.73 | 3.18 | F |
3002 | 3338 | 0.108138 | AAGGCGAGTACCACATCTGC | 60.108 | 55.000 | 0.00 | 0.0 | 0.00 | 4.26 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2227 | 2418 | 0.264955 | ATGTACTCCCTCCGTCCCAT | 59.735 | 55.0 | 0.00 | 0.00 | 0.00 | 4.00 | R |
3193 | 3529 | 0.314302 | CAGAGAACACGTCGAAGGGT | 59.686 | 55.0 | 0.00 | 0.00 | 0.00 | 4.34 | R |
3811 | 4147 | 0.947960 | GGATCTGCACGATCTCGAGA | 59.052 | 55.0 | 19.19 | 19.19 | 46.33 | 4.04 | R |
4488 | 4927 | 0.035458 | GCGGGAGATAAGTGGATGGG | 59.965 | 60.0 | 0.00 | 0.00 | 0.00 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 3.081804 | GGATCATCACGGTCAAAAAGGT | 58.918 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
46 | 47 | 3.127030 | GGATCATCACGGTCAAAAAGGTC | 59.873 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
108 | 109 | 2.517166 | GGGCCTCGCTTTGGATCC | 60.517 | 66.667 | 4.20 | 4.20 | 0.00 | 3.36 |
143 | 144 | 2.575279 | CAGGATATCCCCAGGAATGGAG | 59.425 | 54.545 | 18.56 | 0.00 | 34.34 | 3.86 |
149 | 150 | 1.357761 | TCCCCAGGAATGGAGGAAAAC | 59.642 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
192 | 193 | 2.149973 | AGGAAAATAAGCTGGCTGGG | 57.850 | 50.000 | 0.00 | 0.00 | 0.00 | 4.45 |
197 | 199 | 4.080919 | GGAAAATAAGCTGGCTGGGATTTT | 60.081 | 41.667 | 16.10 | 16.10 | 31.87 | 1.82 |
198 | 200 | 4.476628 | AAATAAGCTGGCTGGGATTTTG | 57.523 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
199 | 201 | 2.897271 | TAAGCTGGCTGGGATTTTGA | 57.103 | 45.000 | 0.00 | 0.00 | 0.00 | 2.69 |
200 | 202 | 2.242882 | AAGCTGGCTGGGATTTTGAT | 57.757 | 45.000 | 0.00 | 0.00 | 0.00 | 2.57 |
210 | 212 | 5.052481 | GCTGGGATTTTGATTTTATCTGGC | 58.948 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
270 | 272 | 1.882623 | GAGGTCAAAAGTCAGGCCAAG | 59.117 | 52.381 | 5.01 | 0.00 | 0.00 | 3.61 |
287 | 289 | 3.255642 | GCCAAGCCAGACAATTAAGACAA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
298 | 300 | 4.141287 | CAATTAAGACAACCAGTGGACCA | 58.859 | 43.478 | 18.40 | 0.00 | 0.00 | 4.02 |
348 | 377 | 3.797559 | AAAAAGAGGTCTCCTTCCTGG | 57.202 | 47.619 | 0.00 | 0.00 | 35.20 | 4.45 |
349 | 378 | 2.723530 | AAAGAGGTCTCCTTCCTGGA | 57.276 | 50.000 | 0.00 | 0.00 | 43.86 | 3.86 |
350 | 379 | 1.945580 | AAGAGGTCTCCTTCCTGGAC | 58.054 | 55.000 | 0.00 | 0.00 | 40.56 | 4.02 |
351 | 380 | 1.089123 | AGAGGTCTCCTTCCTGGACT | 58.911 | 55.000 | 0.00 | 0.00 | 40.56 | 3.85 |
352 | 381 | 1.435168 | AGAGGTCTCCTTCCTGGACTT | 59.565 | 52.381 | 0.00 | 0.00 | 40.56 | 3.01 |
374 | 403 | 6.769822 | ACTTCTTTTTCTTCTCATCTGCAGAA | 59.230 | 34.615 | 22.50 | 3.88 | 0.00 | 3.02 |
388 | 417 | 1.076187 | TGCAGAAGGAGAGAGAGTGGA | 59.924 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
417 | 463 | 1.425066 | AGGAGACTCCACCATTTGCAA | 59.575 | 47.619 | 23.60 | 0.00 | 39.61 | 4.08 |
420 | 466 | 3.069443 | GGAGACTCCACCATTTGCAAAAA | 59.931 | 43.478 | 17.19 | 0.00 | 36.28 | 1.94 |
473 | 519 | 2.873649 | GCTTCTCCTCCCTTTGTCTGTG | 60.874 | 54.545 | 0.00 | 0.00 | 0.00 | 3.66 |
474 | 520 | 1.352083 | TCTCCTCCCTTTGTCTGTGG | 58.648 | 55.000 | 0.00 | 0.00 | 0.00 | 4.17 |
525 | 571 | 8.398665 | TCTTTCTTTCTTTCTTCTGTTTAGCAC | 58.601 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
526 | 572 | 7.624360 | TTCTTTCTTTCTTCTGTTTAGCACA | 57.376 | 32.000 | 0.00 | 0.00 | 0.00 | 4.57 |
573 | 620 | 2.205342 | TCCAAAAGATACAGGGGAGGG | 58.795 | 52.381 | 0.00 | 0.00 | 0.00 | 4.30 |
576 | 623 | 2.173569 | CAAAAGATACAGGGGAGGGGAG | 59.826 | 54.545 | 0.00 | 0.00 | 0.00 | 4.30 |
715 | 768 | 4.496927 | CCCGCATCGCTTTTGCCC | 62.497 | 66.667 | 0.00 | 0.00 | 43.93 | 5.36 |
746 | 799 | 4.135153 | TGCTTCTCTCCGGCGAGC | 62.135 | 66.667 | 16.85 | 9.01 | 35.94 | 5.03 |
837 | 902 | 3.309682 | TGAACTTCTTCTGCGAGTTTGTG | 59.690 | 43.478 | 0.00 | 0.00 | 34.02 | 3.33 |
965 | 1030 | 4.832248 | TGAGACTTGAGAGAGAGAGAGAC | 58.168 | 47.826 | 0.00 | 0.00 | 0.00 | 3.36 |
967 | 1032 | 5.221823 | TGAGACTTGAGAGAGAGAGAGACAA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
971 | 1058 | 4.380843 | TGAGAGAGAGAGAGACAACCTT | 57.619 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
1322 | 1421 | 2.686106 | TGTAAGGCCCCGACCCTC | 60.686 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
1455 | 1556 | 6.693113 | GGTTCATTGTCAAAGAAAGTTCTGAC | 59.307 | 38.462 | 4.87 | 6.52 | 37.65 | 3.51 |
1457 | 1558 | 7.251704 | TCATTGTCAAAGAAAGTTCTGACTC | 57.748 | 36.000 | 12.15 | 0.04 | 37.65 | 3.36 |
1462 | 1563 | 8.110860 | TGTCAAAGAAAGTTCTGACTCTTTTT | 57.889 | 30.769 | 12.15 | 1.89 | 37.65 | 1.94 |
1587 | 1688 | 2.093711 | GGCCCTAAATGATTTGGCGTTT | 60.094 | 45.455 | 11.63 | 0.00 | 30.99 | 3.60 |
1600 | 1701 | 1.001924 | TGGCGTTTGCATACTGTTGTG | 60.002 | 47.619 | 5.74 | 0.00 | 45.35 | 3.33 |
1619 | 1720 | 4.739195 | TGTGTGCTTTGTTGTTTAGGTTC | 58.261 | 39.130 | 0.00 | 0.00 | 0.00 | 3.62 |
1677 | 1778 | 2.195567 | CGGGATCGCCGGTTACCTA | 61.196 | 63.158 | 1.90 | 0.00 | 33.83 | 3.08 |
1758 | 1859 | 3.066760 | GGTTCCTATTTCGGATTGCTTGG | 59.933 | 47.826 | 0.00 | 0.00 | 32.02 | 3.61 |
1787 | 1888 | 6.643388 | TGGAGATAATTCGGTGATATGATGG | 58.357 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1822 | 1923 | 7.586300 | CAGTACTTTTATGTTTGTTGAAGGACG | 59.414 | 37.037 | 0.00 | 0.00 | 34.08 | 4.79 |
1853 | 1954 | 0.038021 | TGCAAGGAAGCACCAGCATA | 59.962 | 50.000 | 12.98 | 0.00 | 43.38 | 3.14 |
1993 | 2094 | 1.209747 | AGATGGGTTTCTACGCTTCCC | 59.790 | 52.381 | 0.00 | 0.00 | 40.25 | 3.97 |
2019 | 2120 | 2.417933 | GCTGCTCATCTTGTTGGTACTG | 59.582 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2030 | 2131 | 4.829064 | TGTTGGTACTGAGATTTGTTGC | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
2038 | 2139 | 5.618056 | ACTGAGATTTGTTGCTGTACATG | 57.382 | 39.130 | 0.00 | 0.00 | 0.00 | 3.21 |
2062 | 2163 | 2.956194 | TGGCGACATGCTTTGCTG | 59.044 | 55.556 | 0.00 | 0.00 | 45.43 | 4.41 |
2064 | 2165 | 1.286880 | GGCGACATGCTTTGCTGTT | 59.713 | 52.632 | 0.00 | 0.00 | 45.43 | 3.16 |
2066 | 2167 | 0.040157 | GCGACATGCTTTGCTGTTCA | 60.040 | 50.000 | 0.00 | 0.00 | 41.73 | 3.18 |
2068 | 2169 | 1.265095 | CGACATGCTTTGCTGTTCACT | 59.735 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2071 | 2172 | 4.554526 | CGACATGCTTTGCTGTTCACTTTA | 60.555 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
2075 | 2261 | 5.627499 | TGCTTTGCTGTTCACTTTATAGG | 57.373 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
2084 | 2270 | 9.344772 | TGCTGTTCACTTTATAGGTTTTTCTTA | 57.655 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
2154 | 2340 | 7.117092 | GCTTCTAGAATCTCGAACCCATATTTC | 59.883 | 40.741 | 5.44 | 0.00 | 0.00 | 2.17 |
2189 | 2380 | 7.741554 | ATGGATTATTATACTCCCTCTGTCC | 57.258 | 40.000 | 6.22 | 0.00 | 0.00 | 4.02 |
2190 | 2381 | 6.023603 | TGGATTATTATACTCCCTCTGTCCC | 58.976 | 44.000 | 6.22 | 0.00 | 0.00 | 4.46 |
2191 | 2382 | 6.023603 | GGATTATTATACTCCCTCTGTCCCA | 58.976 | 44.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2192 | 2383 | 6.674419 | GGATTATTATACTCCCTCTGTCCCAT | 59.326 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
2193 | 2384 | 7.844779 | GGATTATTATACTCCCTCTGTCCCATA | 59.155 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
2194 | 2385 | 9.268282 | GATTATTATACTCCCTCTGTCCCATAA | 57.732 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
2195 | 2386 | 8.666129 | TTATTATACTCCCTCTGTCCCATAAG | 57.334 | 38.462 | 0.00 | 0.00 | 0.00 | 1.73 |
2196 | 2387 | 2.950990 | ACTCCCTCTGTCCCATAAGT | 57.049 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2197 | 2388 | 2.472029 | ACTCCCTCTGTCCCATAAGTG | 58.528 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2198 | 2389 | 2.225650 | ACTCCCTCTGTCCCATAAGTGT | 60.226 | 50.000 | 0.00 | 0.00 | 0.00 | 3.55 |
2199 | 2390 | 3.012502 | ACTCCCTCTGTCCCATAAGTGTA | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
2200 | 2391 | 3.639094 | CTCCCTCTGTCCCATAAGTGTAG | 59.361 | 52.174 | 0.00 | 0.00 | 0.00 | 2.74 |
2201 | 2392 | 3.012502 | TCCCTCTGTCCCATAAGTGTAGT | 59.987 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
2202 | 2393 | 3.133003 | CCCTCTGTCCCATAAGTGTAGTG | 59.867 | 52.174 | 0.00 | 0.00 | 0.00 | 2.74 |
2203 | 2394 | 3.769844 | CCTCTGTCCCATAAGTGTAGTGT | 59.230 | 47.826 | 0.00 | 0.00 | 0.00 | 3.55 |
2204 | 2395 | 4.142138 | CCTCTGTCCCATAAGTGTAGTGTC | 60.142 | 50.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2205 | 2396 | 4.412843 | TCTGTCCCATAAGTGTAGTGTCA | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 3.58 |
2206 | 2397 | 4.836175 | TCTGTCCCATAAGTGTAGTGTCAA | 59.164 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2207 | 2398 | 5.305902 | TCTGTCCCATAAGTGTAGTGTCAAA | 59.694 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2208 | 2399 | 5.931294 | TGTCCCATAAGTGTAGTGTCAAAA | 58.069 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
2209 | 2400 | 6.358178 | TGTCCCATAAGTGTAGTGTCAAAAA | 58.642 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
2232 | 2423 | 8.795842 | AAAACGTCTTACATTACATTATGGGA | 57.204 | 30.769 | 0.00 | 0.00 | 0.00 | 4.37 |
2233 | 2424 | 7.781548 | AACGTCTTACATTACATTATGGGAC | 57.218 | 36.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2234 | 2425 | 5.981315 | ACGTCTTACATTACATTATGGGACG | 59.019 | 40.000 | 17.90 | 17.90 | 43.66 | 4.79 |
2235 | 2426 | 5.404366 | CGTCTTACATTACATTATGGGACGG | 59.596 | 44.000 | 0.00 | 0.00 | 39.86 | 4.79 |
2236 | 2427 | 6.518493 | GTCTTACATTACATTATGGGACGGA | 58.482 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2237 | 2428 | 6.645415 | GTCTTACATTACATTATGGGACGGAG | 59.355 | 42.308 | 0.00 | 0.00 | 0.00 | 4.63 |
2238 | 2429 | 4.351874 | ACATTACATTATGGGACGGAGG | 57.648 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2239 | 2430 | 3.072476 | ACATTACATTATGGGACGGAGGG | 59.928 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2240 | 2431 | 2.779429 | TACATTATGGGACGGAGGGA | 57.221 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2241 | 2432 | 1.424638 | ACATTATGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2242 | 2433 | 1.344087 | ACATTATGGGACGGAGGGAGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2243 | 2434 | 2.090943 | ACATTATGGGACGGAGGGAGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2244 | 2435 | 2.077687 | TTATGGGACGGAGGGAGTAC | 57.922 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2470 | 2749 | 8.339714 | CAAATGATCATTCTGTTTGCAGTTTTT | 58.660 | 29.630 | 20.95 | 0.00 | 43.05 | 1.94 |
2504 | 2791 | 5.067544 | ACACTCGGGTATAAGCTACTTCTTC | 59.932 | 44.000 | 0.00 | 0.00 | 0.00 | 2.87 |
2554 | 2841 | 4.214758 | GCATATGCTTCTACATGCACATGA | 59.785 | 41.667 | 20.64 | 0.86 | 44.12 | 3.07 |
2681 | 2968 | 4.816385 | TCTTGCAACTTCAGACTAGTTTGG | 59.184 | 41.667 | 13.07 | 1.36 | 33.73 | 3.28 |
2914 | 3250 | 4.032900 | GCATAGACCACACTGATACAAACG | 59.967 | 45.833 | 0.00 | 0.00 | 0.00 | 3.60 |
2994 | 3330 | 0.810016 | AGAACGAGAAGGCGAGTACC | 59.190 | 55.000 | 0.00 | 0.00 | 34.83 | 3.34 |
3002 | 3338 | 0.108138 | AAGGCGAGTACCACATCTGC | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
3005 | 3341 | 1.676014 | GGCGAGTACCACATCTGCTTT | 60.676 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
3048 | 3384 | 2.234908 | ACAGAACTGGGTATCTGACTGC | 59.765 | 50.000 | 9.56 | 0.00 | 44.64 | 4.40 |
3058 | 3394 | 4.141937 | GGGTATCTGACTGCTGTGTTCATA | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 2.15 |
3061 | 3397 | 4.806640 | TCTGACTGCTGTGTTCATATCA | 57.193 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
3076 | 3412 | 5.109500 | TCATATCAACACCAATGCAGGTA | 57.891 | 39.130 | 0.00 | 0.00 | 40.77 | 3.08 |
3115 | 3451 | 1.227527 | TGGAGGTGCAAGTGTGTCG | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
3139 | 3475 | 1.616994 | GCCCTAGAACACTGCCCAAAT | 60.617 | 52.381 | 0.00 | 0.00 | 0.00 | 2.32 |
3193 | 3529 | 4.721776 | ACAATGGTAAAGGATAGCCAGAGA | 59.278 | 41.667 | 0.00 | 0.00 | 36.29 | 3.10 |
3238 | 3574 | 3.009473 | AGGTATGCACTCCTTTGATGTGT | 59.991 | 43.478 | 5.77 | 0.00 | 34.52 | 3.72 |
3241 | 3577 | 0.798776 | GCACTCCTTTGATGTGTCCG | 59.201 | 55.000 | 0.00 | 0.00 | 34.52 | 4.79 |
3242 | 3578 | 1.878102 | GCACTCCTTTGATGTGTCCGT | 60.878 | 52.381 | 0.00 | 0.00 | 34.52 | 4.69 |
3511 | 3847 | 5.746721 | CACATACATTGCCATGTCAATCTTG | 59.253 | 40.000 | 6.70 | 0.84 | 43.06 | 3.02 |
3580 | 3916 | 1.050988 | AGGATATCGCACTGGCCACT | 61.051 | 55.000 | 0.00 | 0.00 | 36.38 | 4.00 |
3590 | 3926 | 2.282391 | TGGCCACTGTGTCCATGC | 60.282 | 61.111 | 6.44 | 1.89 | 0.00 | 4.06 |
3604 | 3940 | 4.528039 | ATGCGGCCCATCCCCTTG | 62.528 | 66.667 | 0.00 | 0.00 | 0.00 | 3.61 |
3670 | 4006 | 1.518572 | CGTCCGCCGCTACTTCATT | 60.519 | 57.895 | 0.00 | 0.00 | 0.00 | 2.57 |
3784 | 4120 | 1.078848 | CCACTGCCCCTTCTTCTCG | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
3787 | 4123 | 1.056660 | ACTGCCCCTTCTTCTCGAAA | 58.943 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3811 | 4147 | 1.912043 | CAGTCCCTCCACAAGATCCTT | 59.088 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
3835 | 4171 | 4.115279 | ATCGTGCAGATCCAAGCG | 57.885 | 55.556 | 0.00 | 0.00 | 33.45 | 4.68 |
3865 | 4201 | 1.901464 | GTTCCCGGGCAAAGCAGAA | 60.901 | 57.895 | 18.49 | 0.00 | 0.00 | 3.02 |
3880 | 4216 | 5.568620 | AAGCAGAAACCCTAGAAGAAGAA | 57.431 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3903 | 4239 | 1.135867 | GAGAGCGCCGAGAAATCATC | 58.864 | 55.000 | 2.29 | 0.00 | 0.00 | 2.92 |
3904 | 4240 | 0.461548 | AGAGCGCCGAGAAATCATCA | 59.538 | 50.000 | 2.29 | 0.00 | 0.00 | 3.07 |
3905 | 4241 | 1.069823 | AGAGCGCCGAGAAATCATCAT | 59.930 | 47.619 | 2.29 | 0.00 | 0.00 | 2.45 |
3913 | 4249 | 3.488678 | CCGAGAAATCATCATGACTGTCG | 59.511 | 47.826 | 0.00 | 9.91 | 32.04 | 4.35 |
3924 | 4260 | 2.385013 | TGACTGTCGGAATGTCATGG | 57.615 | 50.000 | 2.98 | 0.00 | 36.03 | 3.66 |
4118 | 4455 | 1.815003 | GGGCCTGTGAGAGATGTTTTG | 59.185 | 52.381 | 0.84 | 0.00 | 0.00 | 2.44 |
4208 | 4574 | 1.179174 | TGGCTCCCGATCTACATCCG | 61.179 | 60.000 | 0.00 | 0.00 | 0.00 | 4.18 |
4225 | 4640 | 1.219124 | CGTGCATGTCTAGTGGCCT | 59.781 | 57.895 | 3.32 | 0.00 | 0.00 | 5.19 |
4285 | 4700 | 2.821378 | TCTCAAACGTCCGGATTGACTA | 59.179 | 45.455 | 7.81 | 0.00 | 32.97 | 2.59 |
4290 | 4705 | 3.604875 | ACGTCCGGATTGACTAACATT | 57.395 | 42.857 | 7.81 | 0.00 | 32.97 | 2.71 |
4292 | 4707 | 3.194968 | ACGTCCGGATTGACTAACATTCT | 59.805 | 43.478 | 7.81 | 0.00 | 32.97 | 2.40 |
4297 | 4712 | 6.984474 | GTCCGGATTGACTAACATTCTTCATA | 59.016 | 38.462 | 7.81 | 0.00 | 32.39 | 2.15 |
4299 | 4714 | 7.872993 | TCCGGATTGACTAACATTCTTCATATC | 59.127 | 37.037 | 0.00 | 0.00 | 0.00 | 1.63 |
4310 | 4748 | 2.826428 | TCTTCATATCCAAGTGCGCTC | 58.174 | 47.619 | 9.73 | 4.74 | 0.00 | 5.03 |
4311 | 4749 | 2.168313 | TCTTCATATCCAAGTGCGCTCA | 59.832 | 45.455 | 9.73 | 0.00 | 0.00 | 4.26 |
4341 | 4779 | 3.428999 | CGACTGACTATCGGGTTTGACAT | 60.429 | 47.826 | 0.00 | 0.00 | 35.92 | 3.06 |
4353 | 4791 | 2.490115 | GGTTTGACATGTAATTGCCCGA | 59.510 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
4354 | 4792 | 3.498082 | GTTTGACATGTAATTGCCCGAC | 58.502 | 45.455 | 0.00 | 0.00 | 0.00 | 4.79 |
4359 | 4797 | 0.623723 | ATGTAATTGCCCGACACCCT | 59.376 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
4360 | 4798 | 1.277579 | TGTAATTGCCCGACACCCTA | 58.722 | 50.000 | 0.00 | 0.00 | 0.00 | 3.53 |
4361 | 4799 | 1.841277 | TGTAATTGCCCGACACCCTAT | 59.159 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
4362 | 4800 | 2.218603 | GTAATTGCCCGACACCCTATG | 58.781 | 52.381 | 0.00 | 0.00 | 0.00 | 2.23 |
4364 | 4802 | 2.624674 | ATTGCCCGACACCCTATGGC | 62.625 | 60.000 | 0.00 | 0.00 | 42.49 | 4.40 |
4378 | 4817 | 2.248248 | CTATGGCCGTCTCCTCCAATA | 58.752 | 52.381 | 0.00 | 0.00 | 33.04 | 1.90 |
4391 | 4830 | 1.553248 | CTCCAATAGGGGTGTGAACGA | 59.447 | 52.381 | 0.00 | 0.00 | 37.22 | 3.85 |
4399 | 4838 | 3.335534 | GTGTGAACGACGCCGCTT | 61.336 | 61.111 | 0.00 | 0.00 | 39.95 | 4.68 |
4413 | 4852 | 0.967380 | CCGCTTGAGGGCCAAAATCT | 60.967 | 55.000 | 6.18 | 0.00 | 33.76 | 2.40 |
4415 | 4854 | 0.108472 | GCTTGAGGGCCAAAATCTGC | 60.108 | 55.000 | 6.18 | 0.00 | 33.76 | 4.26 |
4425 | 4864 | 4.371786 | GGCCAAAATCTGCCTATTTAAGC | 58.628 | 43.478 | 0.00 | 6.53 | 44.46 | 3.09 |
4429 | 4868 | 3.857157 | AATCTGCCTATTTAAGCCGGA | 57.143 | 42.857 | 5.05 | 0.00 | 0.00 | 5.14 |
4432 | 4871 | 2.438021 | TCTGCCTATTTAAGCCGGATGT | 59.562 | 45.455 | 5.05 | 0.00 | 0.00 | 3.06 |
4437 | 4876 | 3.679980 | CCTATTTAAGCCGGATGTCATCG | 59.320 | 47.826 | 5.05 | 2.75 | 0.00 | 3.84 |
4445 | 4884 | 1.522092 | GGATGTCATCGTCCAGCCA | 59.478 | 57.895 | 6.74 | 0.00 | 46.10 | 4.75 |
4449 | 4888 | 1.775385 | TGTCATCGTCCAGCCATAGA | 58.225 | 50.000 | 0.00 | 0.00 | 0.00 | 1.98 |
4450 | 4889 | 1.683385 | TGTCATCGTCCAGCCATAGAG | 59.317 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
4452 | 4891 | 1.957177 | TCATCGTCCAGCCATAGAGAC | 59.043 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
4466 | 4905 | 4.446371 | CATAGAGACATCCGCTTCCTTTT | 58.554 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
4467 | 4906 | 3.425162 | AGAGACATCCGCTTCCTTTTT | 57.575 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
4471 | 4910 | 4.145052 | AGACATCCGCTTCCTTTTTCTTT | 58.855 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
4476 | 4915 | 2.127251 | CGCTTCCTTTTTCTTTGTGCC | 58.873 | 47.619 | 0.00 | 0.00 | 0.00 | 5.01 |
4478 | 4917 | 2.481276 | GCTTCCTTTTTCTTTGTGCCGT | 60.481 | 45.455 | 0.00 | 0.00 | 0.00 | 5.68 |
4483 | 4922 | 0.383949 | TTTTCTTTGTGCCGTCAGCC | 59.616 | 50.000 | 0.00 | 0.00 | 42.71 | 4.85 |
4487 | 4926 | 0.957395 | CTTTGTGCCGTCAGCCTGAT | 60.957 | 55.000 | 0.00 | 0.00 | 42.71 | 2.90 |
4488 | 4927 | 0.955428 | TTTGTGCCGTCAGCCTGATC | 60.955 | 55.000 | 0.00 | 0.00 | 42.71 | 2.92 |
4506 | 4945 | 1.717032 | TCCCATCCACTTATCTCCCG | 58.283 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
4516 | 4955 | 1.139853 | CTTATCTCCCGCTCTGCCTTT | 59.860 | 52.381 | 0.00 | 0.00 | 0.00 | 3.11 |
4522 | 4961 | 0.322008 | CCCGCTCTGCCTTTCTCTTT | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4523 | 4962 | 0.801251 | CCGCTCTGCCTTTCTCTTTG | 59.199 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
4525 | 4964 | 1.242076 | GCTCTGCCTTTCTCTTTGCA | 58.758 | 50.000 | 0.00 | 0.00 | 0.00 | 4.08 |
4526 | 4965 | 1.817447 | GCTCTGCCTTTCTCTTTGCAT | 59.183 | 47.619 | 0.00 | 0.00 | 32.53 | 3.96 |
4527 | 4966 | 2.415625 | GCTCTGCCTTTCTCTTTGCATG | 60.416 | 50.000 | 0.00 | 0.00 | 32.53 | 4.06 |
4532 | 4971 | 1.067354 | CCTTTCTCTTTGCATGCCACC | 60.067 | 52.381 | 16.68 | 0.00 | 0.00 | 4.61 |
4576 | 5015 | 4.616181 | AAAAAGACCACATACGCTATGC | 57.384 | 40.909 | 5.32 | 0.00 | 39.79 | 3.14 |
4577 | 5016 | 3.543680 | AAAGACCACATACGCTATGCT | 57.456 | 42.857 | 5.32 | 0.00 | 39.79 | 3.79 |
4578 | 5017 | 4.665833 | AAAGACCACATACGCTATGCTA | 57.334 | 40.909 | 5.32 | 0.00 | 39.79 | 3.49 |
4579 | 5018 | 4.665833 | AAGACCACATACGCTATGCTAA | 57.334 | 40.909 | 5.32 | 0.00 | 39.79 | 3.09 |
4580 | 5019 | 4.873746 | AGACCACATACGCTATGCTAAT | 57.126 | 40.909 | 5.32 | 0.00 | 39.79 | 1.73 |
4581 | 5020 | 4.560128 | AGACCACATACGCTATGCTAATG | 58.440 | 43.478 | 5.32 | 0.00 | 39.79 | 1.90 |
4582 | 5021 | 3.067106 | ACCACATACGCTATGCTAATGC | 58.933 | 45.455 | 5.32 | 0.00 | 39.79 | 3.56 |
4583 | 5022 | 3.244215 | ACCACATACGCTATGCTAATGCT | 60.244 | 43.478 | 5.32 | 0.00 | 39.79 | 3.79 |
4584 | 5023 | 3.124128 | CCACATACGCTATGCTAATGCTG | 59.876 | 47.826 | 5.32 | 0.00 | 39.79 | 4.41 |
4585 | 5024 | 3.124128 | CACATACGCTATGCTAATGCTGG | 59.876 | 47.826 | 5.32 | 0.00 | 39.79 | 4.85 |
4586 | 5025 | 3.006859 | ACATACGCTATGCTAATGCTGGA | 59.993 | 43.478 | 5.32 | 0.00 | 39.79 | 3.86 |
4587 | 5026 | 2.160822 | ACGCTATGCTAATGCTGGAG | 57.839 | 50.000 | 0.00 | 0.00 | 40.48 | 3.86 |
4588 | 5027 | 0.795085 | CGCTATGCTAATGCTGGAGC | 59.205 | 55.000 | 0.00 | 0.00 | 40.48 | 4.70 |
4589 | 5028 | 0.795085 | GCTATGCTAATGCTGGAGCG | 59.205 | 55.000 | 0.00 | 0.00 | 45.83 | 5.03 |
4590 | 5029 | 1.436600 | CTATGCTAATGCTGGAGCGG | 58.563 | 55.000 | 0.00 | 0.00 | 45.83 | 5.52 |
4591 | 5030 | 0.603707 | TATGCTAATGCTGGAGCGGC | 60.604 | 55.000 | 0.00 | 0.00 | 45.83 | 6.53 |
4592 | 5031 | 3.643978 | GCTAATGCTGGAGCGGCG | 61.644 | 66.667 | 0.51 | 0.51 | 45.83 | 6.46 |
4593 | 5032 | 2.202932 | CTAATGCTGGAGCGGCGT | 60.203 | 61.111 | 9.37 | 0.00 | 45.83 | 5.68 |
4594 | 5033 | 1.815421 | CTAATGCTGGAGCGGCGTT | 60.815 | 57.895 | 9.37 | 0.48 | 45.46 | 4.84 |
4595 | 5034 | 1.369091 | CTAATGCTGGAGCGGCGTTT | 61.369 | 55.000 | 9.37 | 0.00 | 41.53 | 3.60 |
4596 | 5035 | 1.366111 | TAATGCTGGAGCGGCGTTTC | 61.366 | 55.000 | 9.37 | 0.41 | 41.53 | 2.78 |
4602 | 5041 | 3.793144 | GAGCGGCGTTTCCAGCTG | 61.793 | 66.667 | 9.37 | 6.78 | 42.08 | 4.24 |
4605 | 5044 | 3.357079 | CGGCGTTTCCAGCTGCTT | 61.357 | 61.111 | 8.66 | 0.00 | 33.94 | 3.91 |
4606 | 5045 | 2.908073 | CGGCGTTTCCAGCTGCTTT | 61.908 | 57.895 | 8.66 | 0.00 | 33.94 | 3.51 |
4607 | 5046 | 1.363807 | GGCGTTTCCAGCTGCTTTT | 59.636 | 52.632 | 8.66 | 0.00 | 34.01 | 2.27 |
4608 | 5047 | 0.940991 | GGCGTTTCCAGCTGCTTTTG | 60.941 | 55.000 | 8.66 | 0.00 | 34.01 | 2.44 |
4610 | 5049 | 0.940991 | CGTTTCCAGCTGCTTTTGCC | 60.941 | 55.000 | 8.66 | 0.00 | 46.87 | 4.52 |
4611 | 5050 | 0.104671 | GTTTCCAGCTGCTTTTGCCA | 59.895 | 50.000 | 8.66 | 0.00 | 46.87 | 4.92 |
4612 | 5051 | 1.050204 | TTTCCAGCTGCTTTTGCCAT | 58.950 | 45.000 | 8.66 | 0.00 | 46.87 | 4.40 |
4613 | 5052 | 0.319083 | TTCCAGCTGCTTTTGCCATG | 59.681 | 50.000 | 8.66 | 0.00 | 46.87 | 3.66 |
4614 | 5053 | 1.079405 | CCAGCTGCTTTTGCCATGG | 60.079 | 57.895 | 8.66 | 7.63 | 46.87 | 3.66 |
4615 | 5054 | 1.740296 | CAGCTGCTTTTGCCATGGC | 60.740 | 57.895 | 30.54 | 30.54 | 46.87 | 4.40 |
4616 | 5055 | 2.435410 | GCTGCTTTTGCCATGGCC | 60.435 | 61.111 | 33.44 | 18.08 | 46.87 | 5.36 |
4617 | 5056 | 2.266689 | CTGCTTTTGCCATGGCCC | 59.733 | 61.111 | 33.44 | 16.34 | 46.87 | 5.80 |
4618 | 5057 | 3.652539 | CTGCTTTTGCCATGGCCCG | 62.653 | 63.158 | 33.44 | 18.93 | 46.87 | 6.13 |
4619 | 5058 | 4.455906 | GCTTTTGCCATGGCCCGG | 62.456 | 66.667 | 33.44 | 20.46 | 41.09 | 5.73 |
4673 | 5112 | 3.357079 | CGGCGTTTCCAGCTGCTT | 61.357 | 61.111 | 8.66 | 0.00 | 33.94 | 3.91 |
4679 | 5118 | 0.892814 | GTTTCCAGCTGCTTGAGGCT | 60.893 | 55.000 | 8.66 | 0.00 | 42.39 | 4.58 |
4699 | 5138 | 3.382832 | CCTGCCTCCGGACTCGTT | 61.383 | 66.667 | 0.00 | 0.00 | 33.95 | 3.85 |
4700 | 5139 | 2.125912 | CTGCCTCCGGACTCGTTG | 60.126 | 66.667 | 0.00 | 0.00 | 33.95 | 4.10 |
4701 | 5140 | 3.649277 | CTGCCTCCGGACTCGTTGG | 62.649 | 68.421 | 0.00 | 0.00 | 33.95 | 3.77 |
4702 | 5141 | 3.379445 | GCCTCCGGACTCGTTGGA | 61.379 | 66.667 | 0.00 | 0.00 | 33.95 | 3.53 |
4715 | 5154 | 0.533032 | CGTTGGAGAAGGAGGAGGAC | 59.467 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4727 | 5166 | 0.256464 | AGGAGGACGACGAAGAGGAT | 59.744 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4740 | 5179 | 0.348370 | AGAGGATGGAGGGGGACAAT | 59.652 | 55.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4744 | 5183 | 2.136026 | GGATGGAGGGGGACAATAACT | 58.864 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
4746 | 5185 | 1.295020 | TGGAGGGGGACAATAACTGG | 58.705 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4750 | 5189 | 2.170817 | GAGGGGGACAATAACTGGAGTC | 59.829 | 54.545 | 0.00 | 0.00 | 0.00 | 3.36 |
4783 | 5222 | 1.076632 | ATTCGGAGGAGGACGAGCT | 60.077 | 57.895 | 0.00 | 0.00 | 40.51 | 4.09 |
4785 | 5224 | 3.522731 | CGGAGGAGGACGAGCTGG | 61.523 | 72.222 | 0.00 | 0.00 | 0.00 | 4.85 |
4788 | 5227 | 1.379309 | GAGGAGGACGAGCTGGAGT | 60.379 | 63.158 | 1.44 | 0.00 | 0.00 | 3.85 |
4832 | 5271 | 3.861341 | CACCATGGTGGAGTTCGAT | 57.139 | 52.632 | 33.56 | 0.00 | 40.96 | 3.59 |
4843 | 5282 | 3.020274 | TGGAGTTCGATCCTCTTCTCTG | 58.980 | 50.000 | 6.62 | 0.00 | 40.29 | 3.35 |
4844 | 5283 | 3.020984 | GGAGTTCGATCCTCTTCTCTGT | 58.979 | 50.000 | 11.17 | 0.00 | 36.35 | 3.41 |
4845 | 5284 | 3.181491 | GGAGTTCGATCCTCTTCTCTGTG | 60.181 | 52.174 | 11.17 | 0.00 | 36.35 | 3.66 |
4846 | 5285 | 3.691575 | AGTTCGATCCTCTTCTCTGTGA | 58.308 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
4847 | 5286 | 3.442273 | AGTTCGATCCTCTTCTCTGTGAC | 59.558 | 47.826 | 0.00 | 0.00 | 0.00 | 3.67 |
4848 | 5287 | 2.010497 | TCGATCCTCTTCTCTGTGACG | 58.990 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
4849 | 5288 | 1.532921 | CGATCCTCTTCTCTGTGACGC | 60.533 | 57.143 | 0.00 | 0.00 | 0.00 | 5.19 |
4850 | 5289 | 0.820871 | ATCCTCTTCTCTGTGACGCC | 59.179 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4851 | 5290 | 1.216710 | CCTCTTCTCTGTGACGCCC | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
4852 | 5291 | 1.216710 | CTCTTCTCTGTGACGCCCC | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
4853 | 5292 | 2.125912 | CTTCTCTGTGACGCCCCG | 60.126 | 66.667 | 0.00 | 0.00 | 0.00 | 5.73 |
4854 | 5293 | 2.599281 | TTCTCTGTGACGCCCCGA | 60.599 | 61.111 | 0.00 | 0.00 | 0.00 | 5.14 |
4855 | 5294 | 2.820767 | CTTCTCTGTGACGCCCCGAC | 62.821 | 65.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4856 | 5295 | 3.374402 | CTCTGTGACGCCCCGACT | 61.374 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
4857 | 5296 | 2.915659 | TCTGTGACGCCCCGACTT | 60.916 | 61.111 | 0.00 | 0.00 | 0.00 | 3.01 |
4858 | 5297 | 1.592400 | CTCTGTGACGCCCCGACTTA | 61.592 | 60.000 | 0.00 | 0.00 | 0.00 | 2.24 |
4859 | 5298 | 1.180456 | TCTGTGACGCCCCGACTTAA | 61.180 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
4860 | 5299 | 0.108329 | CTGTGACGCCCCGACTTAAT | 60.108 | 55.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4861 | 5300 | 0.108520 | TGTGACGCCCCGACTTAATC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4862 | 5301 | 0.108520 | GTGACGCCCCGACTTAATCA | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
4863 | 5302 | 0.828022 | TGACGCCCCGACTTAATCAT | 59.172 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4864 | 5303 | 1.217882 | GACGCCCCGACTTAATCATG | 58.782 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
4865 | 5304 | 0.814010 | ACGCCCCGACTTAATCATGC | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 4.06 |
4866 | 5305 | 0.813610 | CGCCCCGACTTAATCATGCA | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 3.96 |
4867 | 5306 | 0.663153 | GCCCCGACTTAATCATGCAC | 59.337 | 55.000 | 0.00 | 0.00 | 0.00 | 4.57 |
4868 | 5307 | 1.747206 | GCCCCGACTTAATCATGCACT | 60.747 | 52.381 | 0.00 | 0.00 | 0.00 | 4.40 |
4869 | 5308 | 2.484770 | GCCCCGACTTAATCATGCACTA | 60.485 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
4870 | 5309 | 3.804036 | CCCCGACTTAATCATGCACTAA | 58.196 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
4871 | 5310 | 4.389374 | CCCCGACTTAATCATGCACTAAT | 58.611 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
4872 | 5311 | 4.452455 | CCCCGACTTAATCATGCACTAATC | 59.548 | 45.833 | 0.00 | 0.00 | 0.00 | 1.75 |
4873 | 5312 | 5.056480 | CCCGACTTAATCATGCACTAATCA | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
4874 | 5313 | 5.702670 | CCCGACTTAATCATGCACTAATCAT | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 2.45 |
4875 | 5314 | 6.873605 | CCCGACTTAATCATGCACTAATCATA | 59.126 | 38.462 | 0.00 | 0.00 | 0.00 | 2.15 |
4876 | 5315 | 7.148573 | CCCGACTTAATCATGCACTAATCATAC | 60.149 | 40.741 | 0.00 | 0.00 | 0.00 | 2.39 |
4877 | 5316 | 7.384932 | CCGACTTAATCATGCACTAATCATACA | 59.615 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
4878 | 5317 | 8.929746 | CGACTTAATCATGCACTAATCATACAT | 58.070 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4880 | 5319 | 8.509690 | ACTTAATCATGCACTAATCATACATGC | 58.490 | 33.333 | 0.00 | 0.00 | 38.36 | 4.06 |
4889 | 5328 | 9.282569 | TGCACTAATCATACATGCAAATATACA | 57.717 | 29.630 | 0.00 | 0.00 | 43.00 | 2.29 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
45 | 46 | 3.385193 | TCATGTCTGACTTTTGAGCGA | 57.615 | 42.857 | 9.51 | 0.00 | 0.00 | 4.93 |
46 | 47 | 3.364366 | GGTTCATGTCTGACTTTTGAGCG | 60.364 | 47.826 | 9.51 | 0.00 | 0.00 | 5.03 |
98 | 99 | 0.735471 | GCCTTTCTCGGATCCAAAGC | 59.265 | 55.000 | 13.41 | 7.05 | 0.00 | 3.51 |
108 | 109 | 0.539051 | ATCCTGGTCTGCCTTTCTCG | 59.461 | 55.000 | 0.00 | 0.00 | 35.27 | 4.04 |
176 | 177 | 4.531732 | TCAAAATCCCAGCCAGCTTATTTT | 59.468 | 37.500 | 9.61 | 9.61 | 0.00 | 1.82 |
192 | 193 | 8.419442 | AGAATCAGGCCAGATAAAATCAAAATC | 58.581 | 33.333 | 11.55 | 1.29 | 0.00 | 2.17 |
197 | 199 | 6.005066 | TCAGAATCAGGCCAGATAAAATCA | 57.995 | 37.500 | 11.55 | 0.00 | 0.00 | 2.57 |
198 | 200 | 5.472820 | CCTCAGAATCAGGCCAGATAAAATC | 59.527 | 44.000 | 11.55 | 5.30 | 0.00 | 2.17 |
199 | 201 | 5.133322 | TCCTCAGAATCAGGCCAGATAAAAT | 59.867 | 40.000 | 11.55 | 0.00 | 0.00 | 1.82 |
200 | 202 | 4.474651 | TCCTCAGAATCAGGCCAGATAAAA | 59.525 | 41.667 | 11.55 | 0.00 | 0.00 | 1.52 |
210 | 212 | 8.654997 | TCCTCTTTATTATTCCTCAGAATCAGG | 58.345 | 37.037 | 0.00 | 0.00 | 41.91 | 3.86 |
270 | 272 | 3.821033 | ACTGGTTGTCTTAATTGTCTGGC | 59.179 | 43.478 | 0.00 | 0.00 | 0.00 | 4.85 |
287 | 289 | 1.925455 | CCATCCCTGGTCCACTGGT | 60.925 | 63.158 | 0.00 | 0.00 | 37.79 | 4.00 |
298 | 300 | 4.402616 | TCTTCACCAATTTTCCATCCCT | 57.597 | 40.909 | 0.00 | 0.00 | 0.00 | 4.20 |
347 | 376 | 5.471456 | TGCAGATGAGAAGAAAAAGAAGTCC | 59.529 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
348 | 377 | 6.426328 | TCTGCAGATGAGAAGAAAAAGAAGTC | 59.574 | 38.462 | 13.74 | 0.00 | 0.00 | 3.01 |
349 | 378 | 6.294473 | TCTGCAGATGAGAAGAAAAAGAAGT | 58.706 | 36.000 | 13.74 | 0.00 | 0.00 | 3.01 |
350 | 379 | 6.798315 | TCTGCAGATGAGAAGAAAAAGAAG | 57.202 | 37.500 | 13.74 | 0.00 | 0.00 | 2.85 |
351 | 380 | 6.206243 | CCTTCTGCAGATGAGAAGAAAAAGAA | 59.794 | 38.462 | 26.59 | 2.62 | 46.44 | 2.52 |
352 | 381 | 5.704515 | CCTTCTGCAGATGAGAAGAAAAAGA | 59.295 | 40.000 | 26.59 | 3.25 | 46.44 | 2.52 |
374 | 403 | 2.242196 | CTCTCCTTCCACTCTCTCTCCT | 59.758 | 54.545 | 0.00 | 0.00 | 0.00 | 3.69 |
417 | 463 | 5.396324 | GGTTTCCTGGGAATTGTGTCTTTTT | 60.396 | 40.000 | 2.69 | 0.00 | 33.79 | 1.94 |
420 | 466 | 3.230976 | GGTTTCCTGGGAATTGTGTCTT | 58.769 | 45.455 | 2.69 | 0.00 | 33.79 | 3.01 |
525 | 571 | 4.310769 | TCCCGCACAAATAATTTGGTTTG | 58.689 | 39.130 | 0.00 | 8.31 | 44.81 | 2.93 |
526 | 572 | 4.282195 | TCTCCCGCACAAATAATTTGGTTT | 59.718 | 37.500 | 0.00 | 0.00 | 44.81 | 3.27 |
568 | 615 | 1.541672 | CCTCTCTCTCCTCCCCTCC | 59.458 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
715 | 768 | 2.070654 | GAAGCACGGTTGGTTGGGTG | 62.071 | 60.000 | 0.00 | 0.00 | 43.59 | 4.61 |
819 | 884 | 1.397693 | CGCACAAACTCGCAGAAGAAG | 60.398 | 52.381 | 0.00 | 0.00 | 34.09 | 2.85 |
827 | 892 | 0.654472 | CTCAACACGCACAAACTCGC | 60.654 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
837 | 902 | 1.014352 | ACACAGGAAACTCAACACGC | 58.986 | 50.000 | 0.00 | 0.00 | 40.21 | 5.34 |
1430 | 1531 | 6.693113 | GTCAGAACTTTCTTTGACAATGAACC | 59.307 | 38.462 | 14.25 | 6.39 | 34.74 | 3.62 |
1468 | 1569 | 9.220906 | TGTAACTGGACCAACCTCTATATAATT | 57.779 | 33.333 | 0.00 | 0.00 | 39.86 | 1.40 |
1470 | 1571 | 8.612486 | TTGTAACTGGACCAACCTCTATATAA | 57.388 | 34.615 | 0.00 | 0.00 | 39.86 | 0.98 |
1471 | 1572 | 8.480501 | GTTTGTAACTGGACCAACCTCTATATA | 58.519 | 37.037 | 0.00 | 0.00 | 39.86 | 0.86 |
1472 | 1573 | 7.182206 | AGTTTGTAACTGGACCAACCTCTATAT | 59.818 | 37.037 | 0.00 | 0.00 | 41.01 | 0.86 |
1587 | 1688 | 2.687425 | ACAAAGCACACAACAGTATGCA | 59.313 | 40.909 | 1.55 | 0.00 | 42.53 | 3.96 |
1600 | 1701 | 5.290885 | CCAAAGAACCTAAACAACAAAGCAC | 59.709 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1619 | 1720 | 3.243367 | TGACAGAATTTTGCCGACCAAAG | 60.243 | 43.478 | 0.00 | 0.00 | 43.77 | 2.77 |
1665 | 1766 | 0.390735 | AGCAAAGTAGGTAACCGGCG | 60.391 | 55.000 | 0.00 | 0.00 | 37.17 | 6.46 |
1677 | 1778 | 7.014230 | ACCAGACATTAAACAATGTAGCAAAGT | 59.986 | 33.333 | 3.13 | 0.00 | 42.92 | 2.66 |
1743 | 1844 | 3.118665 | CCAATTCCCAAGCAATCCGAAAT | 60.119 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
1747 | 1848 | 1.406539 | CTCCAATTCCCAAGCAATCCG | 59.593 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
1758 | 1859 | 7.824289 | TCATATCACCGAATTATCTCCAATTCC | 59.176 | 37.037 | 3.65 | 0.00 | 40.36 | 3.01 |
1822 | 1923 | 3.431233 | GCTTCCTTGCAGAAAAAGAATGC | 59.569 | 43.478 | 4.88 | 0.00 | 40.40 | 3.56 |
1853 | 1954 | 6.064717 | AGCCATGAAGAAACTGAGTAAAAGT | 58.935 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
1911 | 2012 | 9.726232 | CAACTACAGCGTAATATGAAGTTACTA | 57.274 | 33.333 | 0.00 | 0.00 | 31.47 | 1.82 |
1927 | 2028 | 3.997021 | ACCTCTGATTTTCAACTACAGCG | 59.003 | 43.478 | 0.00 | 0.00 | 0.00 | 5.18 |
1928 | 2029 | 5.703130 | AGAACCTCTGATTTTCAACTACAGC | 59.297 | 40.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1993 | 2094 | 1.199327 | CAACAAGATGAGCAGCACAGG | 59.801 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
2019 | 2120 | 5.411361 | TGGTACATGTACAGCAACAAATCTC | 59.589 | 40.000 | 31.52 | 13.73 | 37.78 | 2.75 |
2030 | 2131 | 2.607635 | GTCGCCATTGGTACATGTACAG | 59.392 | 50.000 | 31.52 | 19.46 | 39.30 | 2.74 |
2038 | 2139 | 1.094785 | AAGCATGTCGCCATTGGTAC | 58.905 | 50.000 | 4.26 | 4.12 | 44.04 | 3.34 |
2055 | 2156 | 8.871686 | AAAAACCTATAAAGTGAACAGCAAAG | 57.128 | 30.769 | 0.00 | 0.00 | 0.00 | 2.77 |
2056 | 2157 | 8.691797 | AGAAAAACCTATAAAGTGAACAGCAAA | 58.308 | 29.630 | 0.00 | 0.00 | 0.00 | 3.68 |
2186 | 2377 | 6.870971 | TTTTTGACACTACACTTATGGGAC | 57.129 | 37.500 | 0.00 | 0.00 | 0.00 | 4.46 |
2206 | 2397 | 9.233649 | TCCCATAATGTAATGTAAGACGTTTTT | 57.766 | 29.630 | 0.00 | 0.00 | 0.00 | 1.94 |
2207 | 2398 | 8.671028 | GTCCCATAATGTAATGTAAGACGTTTT | 58.329 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2208 | 2399 | 7.010738 | CGTCCCATAATGTAATGTAAGACGTTT | 59.989 | 37.037 | 0.00 | 0.00 | 37.74 | 3.60 |
2209 | 2400 | 6.477688 | CGTCCCATAATGTAATGTAAGACGTT | 59.522 | 38.462 | 0.00 | 0.00 | 37.74 | 3.99 |
2210 | 2401 | 5.981315 | CGTCCCATAATGTAATGTAAGACGT | 59.019 | 40.000 | 0.00 | 0.00 | 37.74 | 4.34 |
2211 | 2402 | 5.404366 | CCGTCCCATAATGTAATGTAAGACG | 59.596 | 44.000 | 0.00 | 0.00 | 39.79 | 4.18 |
2212 | 2403 | 6.518493 | TCCGTCCCATAATGTAATGTAAGAC | 58.482 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2213 | 2404 | 6.239487 | CCTCCGTCCCATAATGTAATGTAAGA | 60.239 | 42.308 | 0.00 | 0.00 | 0.00 | 2.10 |
2214 | 2405 | 5.932303 | CCTCCGTCCCATAATGTAATGTAAG | 59.068 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2215 | 2406 | 5.221762 | CCCTCCGTCCCATAATGTAATGTAA | 60.222 | 44.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2216 | 2407 | 4.285003 | CCCTCCGTCCCATAATGTAATGTA | 59.715 | 45.833 | 0.00 | 0.00 | 0.00 | 2.29 |
2217 | 2408 | 3.072476 | CCCTCCGTCCCATAATGTAATGT | 59.928 | 47.826 | 0.00 | 0.00 | 0.00 | 2.71 |
2218 | 2409 | 3.326588 | TCCCTCCGTCCCATAATGTAATG | 59.673 | 47.826 | 0.00 | 0.00 | 0.00 | 1.90 |
2219 | 2410 | 3.583086 | CTCCCTCCGTCCCATAATGTAAT | 59.417 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
2220 | 2411 | 2.969950 | CTCCCTCCGTCCCATAATGTAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2221 | 2412 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2222 | 2413 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
2223 | 2414 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2224 | 2415 | 2.090943 | TGTACTCCCTCCGTCCCATAAT | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2225 | 2416 | 1.288633 | TGTACTCCCTCCGTCCCATAA | 59.711 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
2226 | 2417 | 0.928505 | TGTACTCCCTCCGTCCCATA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2227 | 2418 | 0.264955 | ATGTACTCCCTCCGTCCCAT | 59.735 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2228 | 2419 | 0.928505 | TATGTACTCCCTCCGTCCCA | 59.071 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2229 | 2420 | 1.133544 | AGTATGTACTCCCTCCGTCCC | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 4.46 |
2230 | 2421 | 2.361643 | AGTATGTACTCCCTCCGTCC | 57.638 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2231 | 2422 | 4.084011 | AGTAGTATGTACTCCCTCCGTC | 57.916 | 50.000 | 0.00 | 0.00 | 37.73 | 4.79 |
2232 | 2423 | 5.839517 | ATAGTAGTATGTACTCCCTCCGT | 57.160 | 43.478 | 0.00 | 0.00 | 37.73 | 4.69 |
2233 | 2424 | 7.337167 | ACATATAGTAGTATGTACTCCCTCCG | 58.663 | 42.308 | 0.00 | 0.00 | 42.03 | 4.63 |
2234 | 2425 | 7.495279 | CGACATATAGTAGTATGTACTCCCTCC | 59.505 | 44.444 | 0.00 | 0.00 | 43.42 | 4.30 |
2235 | 2426 | 8.256605 | TCGACATATAGTAGTATGTACTCCCTC | 58.743 | 40.741 | 0.00 | 0.00 | 43.42 | 4.30 |
2236 | 2427 | 8.143673 | TCGACATATAGTAGTATGTACTCCCT | 57.856 | 38.462 | 0.00 | 0.00 | 43.42 | 4.20 |
2237 | 2428 | 8.783833 | TTCGACATATAGTAGTATGTACTCCC | 57.216 | 38.462 | 0.00 | 0.00 | 43.42 | 4.30 |
2243 | 2434 | 9.929180 | ATGCATTTTCGACATATAGTAGTATGT | 57.071 | 29.630 | 0.00 | 0.00 | 45.41 | 2.29 |
2275 | 2466 | 9.936759 | TCTTATGTATGAATCAACAGTTGTACA | 57.063 | 29.630 | 13.14 | 13.24 | 0.00 | 2.90 |
2326 | 2517 | 7.039504 | ACTCCTAACGGAATGTAACTTGTAAGA | 60.040 | 37.037 | 0.00 | 0.00 | 39.29 | 2.10 |
2354 | 2545 | 3.257375 | TCGTAGTATTGTGTTGCAGTCCT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2360 | 2551 | 6.750501 | TCATAAGACTCGTAGTATTGTGTTGC | 59.249 | 38.462 | 13.98 | 0.00 | 38.88 | 4.17 |
2504 | 2791 | 7.377928 | CAGCATGACTGTTGAAACTCTTTTTAG | 59.622 | 37.037 | 0.00 | 0.00 | 41.86 | 1.85 |
2656 | 2943 | 5.537300 | AACTAGTCTGAAGTTGCAAGAGA | 57.463 | 39.130 | 0.00 | 0.00 | 35.87 | 3.10 |
2681 | 2968 | 6.438763 | CAGTTCAAAAGAACACATAGAACCC | 58.561 | 40.000 | 10.56 | 0.00 | 37.52 | 4.11 |
2706 | 2993 | 4.857037 | ACAAGAAGCGTGAAAAACTGAAAC | 59.143 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
2914 | 3250 | 4.078639 | ACTCTTCCAATGTAGCTATGCC | 57.921 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
2994 | 3330 | 4.556942 | TGTGTGAAGAAAAGCAGATGTG | 57.443 | 40.909 | 0.00 | 0.00 | 0.00 | 3.21 |
3005 | 3341 | 9.119418 | TCTGTTTTCTAATGAATGTGTGAAGAA | 57.881 | 29.630 | 0.00 | 0.00 | 31.56 | 2.52 |
3058 | 3394 | 3.439857 | ACTACCTGCATTGGTGTTGAT | 57.560 | 42.857 | 7.87 | 0.00 | 41.05 | 2.57 |
3061 | 3397 | 3.069443 | CCAAAACTACCTGCATTGGTGTT | 59.931 | 43.478 | 7.87 | 7.32 | 41.05 | 3.32 |
3066 | 3402 | 2.095263 | CCGACCAAAACTACCTGCATTG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 2.82 |
3076 | 3412 | 3.813166 | CACAACTATGACCGACCAAAACT | 59.187 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
3115 | 3451 | 1.475213 | GGGCAGTGTTCTAGGGCATAC | 60.475 | 57.143 | 0.00 | 0.00 | 0.00 | 2.39 |
3139 | 3475 | 3.323979 | GGAATACGGCCTTGGAGATCTTA | 59.676 | 47.826 | 0.00 | 0.00 | 0.00 | 2.10 |
3193 | 3529 | 0.314302 | CAGAGAACACGTCGAAGGGT | 59.686 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
3238 | 3574 | 2.299013 | AGAACATAGAAGTGCACACGGA | 59.701 | 45.455 | 21.04 | 6.86 | 36.20 | 4.69 |
3241 | 3577 | 7.118390 | ACTCAATAAGAACATAGAAGTGCACAC | 59.882 | 37.037 | 21.04 | 12.64 | 0.00 | 3.82 |
3242 | 3578 | 7.161404 | ACTCAATAAGAACATAGAAGTGCACA | 58.839 | 34.615 | 21.04 | 0.00 | 0.00 | 4.57 |
3511 | 3847 | 4.028852 | GACTTGGTCCACAGAAAAACAC | 57.971 | 45.455 | 0.00 | 0.00 | 0.00 | 3.32 |
3601 | 3937 | 1.228063 | CTCCATGATCGGGGCCAAG | 60.228 | 63.158 | 4.39 | 0.00 | 0.00 | 3.61 |
3604 | 3940 | 1.072159 | CTTCTCCATGATCGGGGCC | 59.928 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
3670 | 4006 | 2.626780 | CCTGTCGTCCAGCGTCTGA | 61.627 | 63.158 | 8.20 | 0.00 | 40.06 | 3.27 |
3736 | 4072 | 4.191544 | CCTTTATCTTGAAGATGCCGTCA | 58.808 | 43.478 | 17.50 | 0.00 | 35.37 | 4.35 |
3811 | 4147 | 0.947960 | GGATCTGCACGATCTCGAGA | 59.052 | 55.000 | 19.19 | 19.19 | 46.33 | 4.04 |
3865 | 4201 | 5.269189 | CTCTCCTCTTCTTCTTCTAGGGTT | 58.731 | 45.833 | 0.00 | 0.00 | 0.00 | 4.11 |
3880 | 4216 | 1.040339 | ATTTCTCGGCGCTCTCCTCT | 61.040 | 55.000 | 7.64 | 0.00 | 0.00 | 3.69 |
3905 | 4241 | 1.066215 | CCCATGACATTCCGACAGTCA | 60.066 | 52.381 | 0.41 | 4.95 | 45.26 | 3.41 |
3913 | 4249 | 3.884895 | TCATGTACACCCATGACATTCC | 58.115 | 45.455 | 0.00 | 0.00 | 44.70 | 3.01 |
3924 | 4260 | 3.367025 | GTGCTACTCGTTTCATGTACACC | 59.633 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
4118 | 4455 | 6.237648 | CGGCTCAAGATTTAATTCACATTTGC | 60.238 | 38.462 | 0.56 | 0.00 | 0.00 | 3.68 |
4208 | 4574 | 0.745845 | CCAGGCCACTAGACATGCAC | 60.746 | 60.000 | 5.01 | 0.00 | 0.00 | 4.57 |
4278 | 4693 | 9.911788 | ACTTGGATATGAAGAATGTTAGTCAAT | 57.088 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4285 | 4700 | 4.201950 | GCGCACTTGGATATGAAGAATGTT | 60.202 | 41.667 | 0.30 | 0.00 | 0.00 | 2.71 |
4290 | 4705 | 2.168313 | TGAGCGCACTTGGATATGAAGA | 59.832 | 45.455 | 11.47 | 0.00 | 0.00 | 2.87 |
4292 | 4707 | 2.554142 | CTGAGCGCACTTGGATATGAA | 58.446 | 47.619 | 11.47 | 0.00 | 0.00 | 2.57 |
4297 | 4712 | 2.437359 | GCCTGAGCGCACTTGGAT | 60.437 | 61.111 | 11.47 | 0.00 | 0.00 | 3.41 |
4319 | 4757 | 2.094906 | TGTCAAACCCGATAGTCAGTCG | 60.095 | 50.000 | 0.00 | 0.00 | 38.75 | 4.18 |
4341 | 4779 | 1.277579 | TAGGGTGTCGGGCAATTACA | 58.722 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4353 | 4791 | 2.064581 | GGAGACGGCCATAGGGTGT | 61.065 | 63.158 | 2.24 | 0.00 | 36.17 | 4.16 |
4354 | 4792 | 1.749334 | GAGGAGACGGCCATAGGGTG | 61.749 | 65.000 | 2.24 | 0.00 | 36.17 | 4.61 |
4359 | 4797 | 2.248248 | CTATTGGAGGAGACGGCCATA | 58.752 | 52.381 | 2.24 | 0.00 | 39.01 | 2.74 |
4360 | 4798 | 1.051812 | CTATTGGAGGAGACGGCCAT | 58.948 | 55.000 | 2.24 | 0.00 | 39.01 | 4.40 |
4361 | 4799 | 2.516448 | CTATTGGAGGAGACGGCCA | 58.484 | 57.895 | 2.24 | 0.00 | 37.79 | 5.36 |
4378 | 4817 | 4.309950 | GGCGTCGTTCACACCCCT | 62.310 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4399 | 4838 | 4.440145 | GGCAGATTTTGGCCCTCA | 57.560 | 55.556 | 0.00 | 0.00 | 46.14 | 3.86 |
4415 | 4854 | 3.679980 | CGATGACATCCGGCTTAAATAGG | 59.320 | 47.826 | 9.87 | 0.00 | 0.00 | 2.57 |
4425 | 4864 | 1.592669 | GCTGGACGATGACATCCGG | 60.593 | 63.158 | 9.87 | 0.00 | 43.33 | 5.14 |
4429 | 4868 | 2.298446 | CTCTATGGCTGGACGATGACAT | 59.702 | 50.000 | 0.00 | 0.00 | 35.82 | 3.06 |
4432 | 4871 | 1.957177 | GTCTCTATGGCTGGACGATGA | 59.043 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
4437 | 4876 | 1.000283 | CGGATGTCTCTATGGCTGGAC | 60.000 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
4445 | 4884 | 4.762289 | AAAAGGAAGCGGATGTCTCTAT | 57.238 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
4449 | 4888 | 3.425162 | AGAAAAAGGAAGCGGATGTCT | 57.575 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
4450 | 4889 | 4.229876 | CAAAGAAAAAGGAAGCGGATGTC | 58.770 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
4452 | 4891 | 3.983344 | CACAAAGAAAAAGGAAGCGGATG | 59.017 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
4466 | 4905 | 1.148273 | AGGCTGACGGCACAAAGAA | 59.852 | 52.632 | 8.86 | 0.00 | 44.01 | 2.52 |
4467 | 4906 | 1.597854 | CAGGCTGACGGCACAAAGA | 60.598 | 57.895 | 9.42 | 0.00 | 44.01 | 2.52 |
4471 | 4910 | 2.265739 | GATCAGGCTGACGGCACA | 59.734 | 61.111 | 21.37 | 0.00 | 44.01 | 4.57 |
4476 | 4915 | 1.070445 | GGATGGGATCAGGCTGACG | 59.930 | 63.158 | 21.37 | 0.00 | 0.00 | 4.35 |
4478 | 4917 | 0.326904 | AGTGGATGGGATCAGGCTGA | 60.327 | 55.000 | 21.19 | 21.19 | 0.00 | 4.26 |
4483 | 4922 | 3.262915 | GGGAGATAAGTGGATGGGATCAG | 59.737 | 52.174 | 0.00 | 0.00 | 0.00 | 2.90 |
4487 | 4926 | 1.717032 | CGGGAGATAAGTGGATGGGA | 58.283 | 55.000 | 0.00 | 0.00 | 0.00 | 4.37 |
4488 | 4927 | 0.035458 | GCGGGAGATAAGTGGATGGG | 59.965 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4506 | 4945 | 1.242076 | TGCAAAGAGAAAGGCAGAGC | 58.758 | 50.000 | 0.00 | 0.00 | 0.00 | 4.09 |
4516 | 4955 | 1.675310 | CGGGTGGCATGCAAAGAGA | 60.675 | 57.895 | 21.36 | 0.00 | 0.00 | 3.10 |
4557 | 4996 | 3.543680 | AGCATAGCGTATGTGGTCTTT | 57.456 | 42.857 | 6.80 | 0.00 | 38.43 | 2.52 |
4558 | 4997 | 4.665833 | TTAGCATAGCGTATGTGGTCTT | 57.334 | 40.909 | 6.80 | 0.00 | 38.43 | 3.01 |
4559 | 4998 | 4.560128 | CATTAGCATAGCGTATGTGGTCT | 58.440 | 43.478 | 6.80 | 0.41 | 38.43 | 3.85 |
4560 | 4999 | 3.123621 | GCATTAGCATAGCGTATGTGGTC | 59.876 | 47.826 | 6.80 | 0.00 | 41.58 | 4.02 |
4561 | 5000 | 3.067106 | GCATTAGCATAGCGTATGTGGT | 58.933 | 45.455 | 6.80 | 2.80 | 41.58 | 4.16 |
4562 | 5001 | 3.124128 | CAGCATTAGCATAGCGTATGTGG | 59.876 | 47.826 | 6.80 | 0.00 | 45.49 | 4.17 |
4563 | 5002 | 3.124128 | CCAGCATTAGCATAGCGTATGTG | 59.876 | 47.826 | 6.80 | 0.00 | 45.49 | 3.21 |
4564 | 5003 | 3.006859 | TCCAGCATTAGCATAGCGTATGT | 59.993 | 43.478 | 6.80 | 0.00 | 45.49 | 2.29 |
4565 | 5004 | 3.588955 | TCCAGCATTAGCATAGCGTATG | 58.411 | 45.455 | 0.00 | 0.00 | 45.49 | 2.39 |
4566 | 5005 | 3.854666 | CTCCAGCATTAGCATAGCGTAT | 58.145 | 45.455 | 0.00 | 0.00 | 45.49 | 3.06 |
4567 | 5006 | 2.610479 | GCTCCAGCATTAGCATAGCGTA | 60.610 | 50.000 | 0.00 | 0.00 | 45.49 | 4.42 |
4568 | 5007 | 1.875576 | GCTCCAGCATTAGCATAGCGT | 60.876 | 52.381 | 0.00 | 0.00 | 45.49 | 5.07 |
4569 | 5008 | 0.795085 | GCTCCAGCATTAGCATAGCG | 59.205 | 55.000 | 0.00 | 0.00 | 45.49 | 4.26 |
4570 | 5009 | 0.795085 | CGCTCCAGCATTAGCATAGC | 59.205 | 55.000 | 0.00 | 0.00 | 45.49 | 2.97 |
4571 | 5010 | 1.436600 | CCGCTCCAGCATTAGCATAG | 58.563 | 55.000 | 0.00 | 0.00 | 45.49 | 2.23 |
4572 | 5011 | 0.603707 | GCCGCTCCAGCATTAGCATA | 60.604 | 55.000 | 0.00 | 0.00 | 45.49 | 3.14 |
4573 | 5012 | 1.895707 | GCCGCTCCAGCATTAGCAT | 60.896 | 57.895 | 0.00 | 0.00 | 45.49 | 3.79 |
4574 | 5013 | 2.514592 | GCCGCTCCAGCATTAGCA | 60.515 | 61.111 | 0.00 | 0.00 | 45.49 | 3.49 |
4575 | 5014 | 3.643978 | CGCCGCTCCAGCATTAGC | 61.644 | 66.667 | 0.00 | 0.00 | 42.21 | 3.09 |
4576 | 5015 | 1.369091 | AAACGCCGCTCCAGCATTAG | 61.369 | 55.000 | 0.00 | 0.00 | 42.21 | 1.73 |
4577 | 5016 | 1.366111 | GAAACGCCGCTCCAGCATTA | 61.366 | 55.000 | 0.00 | 0.00 | 42.21 | 1.90 |
4578 | 5017 | 2.672996 | AAACGCCGCTCCAGCATT | 60.673 | 55.556 | 0.00 | 0.00 | 42.21 | 3.56 |
4579 | 5018 | 3.127533 | GAAACGCCGCTCCAGCAT | 61.128 | 61.111 | 0.00 | 0.00 | 42.21 | 3.79 |
4585 | 5024 | 3.793144 | CAGCTGGAAACGCCGCTC | 61.793 | 66.667 | 5.57 | 0.00 | 42.09 | 5.03 |
4588 | 5027 | 2.406452 | AAAAGCAGCTGGAAACGCCG | 62.406 | 55.000 | 17.12 | 0.00 | 40.66 | 6.46 |
4589 | 5028 | 0.940991 | CAAAAGCAGCTGGAAACGCC | 60.941 | 55.000 | 17.12 | 0.00 | 37.10 | 5.68 |
4590 | 5029 | 1.551503 | GCAAAAGCAGCTGGAAACGC | 61.552 | 55.000 | 17.12 | 0.00 | 0.00 | 4.84 |
4591 | 5030 | 0.940991 | GGCAAAAGCAGCTGGAAACG | 60.941 | 55.000 | 17.12 | 0.00 | 0.00 | 3.60 |
4592 | 5031 | 0.104671 | TGGCAAAAGCAGCTGGAAAC | 59.895 | 50.000 | 17.12 | 0.00 | 0.00 | 2.78 |
4593 | 5032 | 1.050204 | ATGGCAAAAGCAGCTGGAAA | 58.950 | 45.000 | 17.12 | 0.00 | 0.00 | 3.13 |
4594 | 5033 | 0.319083 | CATGGCAAAAGCAGCTGGAA | 59.681 | 50.000 | 17.12 | 0.00 | 0.00 | 3.53 |
4595 | 5034 | 1.537814 | CCATGGCAAAAGCAGCTGGA | 61.538 | 55.000 | 17.12 | 0.00 | 31.08 | 3.86 |
4596 | 5035 | 1.079405 | CCATGGCAAAAGCAGCTGG | 60.079 | 57.895 | 17.12 | 0.00 | 0.00 | 4.85 |
4597 | 5036 | 1.740296 | GCCATGGCAAAAGCAGCTG | 60.740 | 57.895 | 32.08 | 10.11 | 41.49 | 4.24 |
4598 | 5037 | 2.660802 | GCCATGGCAAAAGCAGCT | 59.339 | 55.556 | 32.08 | 0.00 | 41.49 | 4.24 |
4599 | 5038 | 2.435410 | GGCCATGGCAAAAGCAGC | 60.435 | 61.111 | 36.56 | 14.15 | 44.11 | 5.25 |
4600 | 5039 | 2.266689 | GGGCCATGGCAAAAGCAG | 59.733 | 61.111 | 36.56 | 0.00 | 44.11 | 4.24 |
4601 | 5040 | 3.693471 | CGGGCCATGGCAAAAGCA | 61.693 | 61.111 | 36.56 | 0.00 | 44.11 | 3.91 |
4602 | 5041 | 4.455906 | CCGGGCCATGGCAAAAGC | 62.456 | 66.667 | 36.56 | 19.43 | 44.11 | 3.51 |
4623 | 5062 | 2.414138 | GCATAGCGTACGTGGTCTTTTT | 59.586 | 45.455 | 17.90 | 0.00 | 0.00 | 1.94 |
4624 | 5063 | 1.997606 | GCATAGCGTACGTGGTCTTTT | 59.002 | 47.619 | 17.90 | 0.00 | 0.00 | 2.27 |
4625 | 5064 | 1.203994 | AGCATAGCGTACGTGGTCTTT | 59.796 | 47.619 | 17.90 | 0.00 | 0.00 | 2.52 |
4689 | 5128 | 1.215647 | CCTTCTCCAACGAGTCCGG | 59.784 | 63.158 | 0.00 | 0.00 | 40.78 | 5.14 |
4699 | 5138 | 0.323542 | GTCGTCCTCCTCCTTCTCCA | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4700 | 5139 | 1.378124 | CGTCGTCCTCCTCCTTCTCC | 61.378 | 65.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4701 | 5140 | 0.392729 | TCGTCGTCCTCCTCCTTCTC | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4702 | 5141 | 0.037877 | TTCGTCGTCCTCCTCCTTCT | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4703 | 5142 | 0.452585 | CTTCGTCGTCCTCCTCCTTC | 59.547 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4704 | 5143 | 0.037877 | TCTTCGTCGTCCTCCTCCTT | 59.962 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
4715 | 5154 | 1.736586 | CCCTCCATCCTCTTCGTCG | 59.263 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
4727 | 5166 | 1.203505 | TCCAGTTATTGTCCCCCTCCA | 60.204 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
4740 | 5179 | 1.625228 | CCCCTCCATGGACTCCAGTTA | 60.625 | 57.143 | 11.44 | 0.00 | 36.75 | 2.24 |
4744 | 5183 | 2.042762 | CCCCCTCCATGGACTCCA | 59.957 | 66.667 | 11.44 | 0.00 | 38.35 | 3.86 |
4746 | 5185 | 3.866582 | CGCCCCCTCCATGGACTC | 61.867 | 72.222 | 11.44 | 0.00 | 38.35 | 3.36 |
4750 | 5189 | 3.497884 | GAATCCGCCCCCTCCATGG | 62.498 | 68.421 | 4.97 | 4.97 | 0.00 | 3.66 |
4785 | 5224 | 3.119096 | GAAGCCCGCAACCGACTC | 61.119 | 66.667 | 0.00 | 0.00 | 36.29 | 3.36 |
4811 | 5250 | 0.321671 | CGAACTCCACCATGGTGTCT | 59.678 | 55.000 | 36.62 | 21.07 | 42.79 | 3.41 |
4822 | 5261 | 3.020274 | CAGAGAAGAGGATCGAACTCCA | 58.980 | 50.000 | 14.64 | 0.00 | 42.67 | 3.86 |
4831 | 5270 | 0.820871 | GGCGTCACAGAGAAGAGGAT | 59.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4832 | 5271 | 1.251527 | GGGCGTCACAGAGAAGAGGA | 61.252 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4843 | 5282 | 0.108520 | TGATTAAGTCGGGGCGTCAC | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
4844 | 5283 | 0.828022 | ATGATTAAGTCGGGGCGTCA | 59.172 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
4845 | 5284 | 1.217882 | CATGATTAAGTCGGGGCGTC | 58.782 | 55.000 | 0.00 | 0.00 | 0.00 | 5.19 |
4846 | 5285 | 0.814010 | GCATGATTAAGTCGGGGCGT | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 5.68 |
4847 | 5286 | 0.813610 | TGCATGATTAAGTCGGGGCG | 60.814 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
4848 | 5287 | 0.663153 | GTGCATGATTAAGTCGGGGC | 59.337 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
4849 | 5288 | 2.332063 | AGTGCATGATTAAGTCGGGG | 57.668 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
4850 | 5289 | 5.056480 | TGATTAGTGCATGATTAAGTCGGG | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 5.14 |
4851 | 5290 | 6.791887 | ATGATTAGTGCATGATTAAGTCGG | 57.208 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
4852 | 5291 | 8.298030 | TGTATGATTAGTGCATGATTAAGTCG | 57.702 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
4854 | 5293 | 8.509690 | GCATGTATGATTAGTGCATGATTAAGT | 58.490 | 33.333 | 0.00 | 0.00 | 40.66 | 2.24 |
4855 | 5294 | 8.508875 | TGCATGTATGATTAGTGCATGATTAAG | 58.491 | 33.333 | 0.00 | 0.00 | 40.66 | 1.85 |
4856 | 5295 | 8.393671 | TGCATGTATGATTAGTGCATGATTAA | 57.606 | 30.769 | 0.00 | 0.00 | 40.66 | 1.40 |
4857 | 5296 | 7.982761 | TGCATGTATGATTAGTGCATGATTA | 57.017 | 32.000 | 0.00 | 0.00 | 40.66 | 1.75 |
4858 | 5297 | 6.887626 | TGCATGTATGATTAGTGCATGATT | 57.112 | 33.333 | 0.00 | 0.00 | 40.66 | 2.57 |
4859 | 5298 | 6.887626 | TTGCATGTATGATTAGTGCATGAT | 57.112 | 33.333 | 0.00 | 0.00 | 44.27 | 2.45 |
4860 | 5299 | 6.696441 | TTTGCATGTATGATTAGTGCATGA | 57.304 | 33.333 | 0.00 | 0.00 | 44.27 | 3.07 |
4863 | 5302 | 9.282569 | TGTATATTTGCATGTATGATTAGTGCA | 57.717 | 29.630 | 0.00 | 0.00 | 43.33 | 4.57 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.