Multiple sequence alignment - TraesCS7A01G321100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G321100 chr7A 100.000 9868 0 0 1 9868 463640815 463650682 0.000000e+00 18223.0
1 TraesCS7A01G321100 chr7A 96.429 280 10 0 6446 6725 22164417 22164696 6.980000e-126 462.0
2 TraesCS7A01G321100 chr7A 88.217 314 21 7 8825 9125 463663026 463663336 2.620000e-95 361.0
3 TraesCS7A01G321100 chr7A 85.714 168 12 4 9265 9432 463669507 463669662 6.130000e-37 167.0
4 TraesCS7A01G321100 chr7B 96.206 5614 124 22 918 6455 417611340 417616940 0.000000e+00 9105.0
5 TraesCS7A01G321100 chr7B 94.616 2433 57 9 6722 9127 417616931 417619316 0.000000e+00 3699.0
6 TraesCS7A01G321100 chr7B 87.838 740 49 18 1 726 417610220 417610932 0.000000e+00 830.0
7 TraesCS7A01G321100 chr7B 95.225 356 16 1 9121 9476 417619268 417619622 6.690000e-156 562.0
8 TraesCS7A01G321100 chr7B 92.152 395 24 6 9479 9868 417619707 417620099 1.450000e-152 551.0
9 TraesCS7A01G321100 chr7B 87.302 315 28 5 8825 9127 417621171 417621485 5.670000e-92 350.0
10 TraesCS7A01G321100 chr7B 96.269 134 3 2 731 862 417611029 417611162 1.670000e-52 219.0
11 TraesCS7A01G321100 chr7B 87.273 165 12 3 9265 9429 417633805 417633960 7.870000e-41 180.0
12 TraesCS7A01G321100 chr7B 100.000 35 0 0 6223 6257 142285303 142285337 2.300000e-06 65.8
13 TraesCS7A01G321100 chr7B 97.059 34 1 0 6188 6221 1283835 1283802 3.850000e-04 58.4
14 TraesCS7A01G321100 chr7D 96.765 4822 72 13 1703 6449 406318062 406322874 0.000000e+00 7963.0
15 TraesCS7A01G321100 chr7D 94.296 2279 75 18 7015 9271 406323216 406325461 0.000000e+00 3437.0
16 TraesCS7A01G321100 chr7D 95.666 1615 51 9 22 1625 406316455 406318061 0.000000e+00 2577.0
17 TraesCS7A01G321100 chr7D 88.255 298 3 2 6722 7019 406322866 406323131 2.660000e-85 327.0
18 TraesCS7A01G321100 chr7D 88.060 201 21 2 7129 7328 62126358 62126160 1.660000e-57 235.0
19 TraesCS7A01G321100 chr7D 81.781 247 31 9 7130 7364 57880425 57880669 2.810000e-45 195.0
20 TraesCS7A01G321100 chr2B 83.757 511 77 5 8362 8869 748425784 748425277 6.930000e-131 479.0
21 TraesCS7A01G321100 chr2B 96.085 281 11 0 6444 6724 139650083 139650363 9.030000e-125 459.0
22 TraesCS7A01G321100 chr2B 90.476 84 8 0 8512 8595 748355955 748355872 2.910000e-20 111.0
23 TraesCS7A01G321100 chr2B 74.453 274 38 21 7130 7382 34146564 34146302 1.370000e-13 89.8
24 TraesCS7A01G321100 chr2B 95.000 40 2 0 6225 6264 113263463 113263502 8.270000e-06 63.9
25 TraesCS7A01G321100 chr2D 96.429 280 10 0 6445 6724 429430532 429430811 6.980000e-126 462.0
26 TraesCS7A01G321100 chr2D 82.745 510 84 3 8362 8869 613098691 613098184 1.510000e-122 451.0
27 TraesCS7A01G321100 chr2D 81.395 258 31 9 7130 7378 635871578 635871329 2.810000e-45 195.0
28 TraesCS7A01G321100 chr1D 96.113 283 10 1 6443 6724 12328199 12327917 2.510000e-125 460.0
29 TraesCS7A01G321100 chr6B 96.727 275 9 0 6446 6720 216586435 216586161 9.030000e-125 459.0
30 TraesCS7A01G321100 chr5D 96.085 281 10 1 6446 6726 33710908 33710629 3.250000e-124 457.0
31 TraesCS7A01G321100 chr5D 96.057 279 11 0 6446 6724 526871400 526871678 1.170000e-123 455.0
32 TraesCS7A01G321100 chr5D 76.923 143 24 6 3101 3236 256471663 256471523 1.370000e-08 73.1
33 TraesCS7A01G321100 chr6D 96.364 275 10 0 6448 6722 448351519 448351793 4.200000e-123 453.0
34 TraesCS7A01G321100 chr6D 97.436 39 1 0 6223 6261 55924954 55924916 6.400000e-07 67.6
35 TraesCS7A01G321100 chr5A 95.088 285 14 0 6441 6725 124868282 124868566 5.440000e-122 449.0
36 TraesCS7A01G321100 chr5A 94.595 37 1 1 3098 3133 657051514 657051550 1.000000e-03 56.5
37 TraesCS7A01G321100 chr2A 81.176 510 92 3 8362 8869 744785934 744785427 3.320000e-109 407.0
38 TraesCS7A01G321100 chr2A 83.582 201 30 3 7130 7328 516839042 516839241 1.690000e-42 185.0
39 TraesCS7A01G321100 chr2A 100.000 30 0 0 3101 3130 353473879 353473850 1.000000e-03 56.5
40 TraesCS7A01G321100 chr4B 83.333 252 29 8 7136 7375 650731591 650731841 4.640000e-53 220.0
41 TraesCS7A01G321100 chr4B 74.638 276 40 23 7130 7385 588434529 588434794 2.930000e-15 95.3
42 TraesCS7A01G321100 chr4B 74.254 268 39 19 7136 7382 60329257 60328999 1.770000e-12 86.1
43 TraesCS7A01G321100 chr1B 80.597 268 39 5 7130 7386 441285600 441285865 2.810000e-45 195.0
44 TraesCS7A01G321100 chr1B 80.934 257 37 8 7130 7375 38177706 38177961 1.010000e-44 193.0
45 TraesCS7A01G321100 chr1B 76.471 136 24 7 3098 3227 345314155 345314288 6.400000e-07 67.6
46 TraesCS7A01G321100 chrUn 83.590 195 28 4 7136 7328 391919314 391919122 7.870000e-41 180.0
47 TraesCS7A01G321100 chr5B 81.944 144 18 7 3098 3235 665975928 665976069 2.250000e-21 115.0
48 TraesCS7A01G321100 chr4D 85.185 108 13 3 7277 7382 485621186 485621292 3.770000e-19 108.0
49 TraesCS7A01G321100 chr4D 80.000 140 23 5 3101 3236 220336925 220337063 2.270000e-16 99.0
50 TraesCS7A01G321100 chr4D 91.549 71 2 4 7316 7384 431407963 431407895 2.930000e-15 95.3
51 TraesCS7A01G321100 chr4D 88.000 50 5 1 6224 6273 479687800 479687752 3.850000e-04 58.4
52 TraesCS7A01G321100 chr4A 85.526 76 6 5 7316 7390 610050083 610050154 3.820000e-09 75.0
53 TraesCS7A01G321100 chr4A 76.224 143 19 9 3097 3236 387121478 387121348 2.980000e-05 62.1
54 TraesCS7A01G321100 chr4A 94.595 37 1 1 6185 6220 518197140 518197104 1.000000e-03 56.5
55 TraesCS7A01G321100 chr3A 95.455 44 2 0 6225 6268 137579600 137579557 4.940000e-08 71.3
56 TraesCS7A01G321100 chr1A 80.392 102 13 6 3098 3194 335022589 335022688 4.940000e-08 71.3
57 TraesCS7A01G321100 chr3D 95.349 43 2 0 6225 6267 126949086 126949044 1.780000e-07 69.4
58 TraesCS7A01G321100 chr3B 95.349 43 2 0 6225 6267 181288851 181288809 1.780000e-07 69.4
59 TraesCS7A01G321100 chr6A 96.970 33 1 0 6189 6221 595071516 595071484 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G321100 chr7A 463640815 463650682 9867 False 18223 18223 100.000000 1 9868 1 chr7A.!!$F2 9867
1 TraesCS7A01G321100 chr7B 417610220 417621485 11265 False 2188 9105 92.801143 1 9868 7 chr7B.!!$F3 9867
2 TraesCS7A01G321100 chr7D 406316455 406325461 9006 False 3576 7963 93.745500 22 9271 4 chr7D.!!$F2 9249
3 TraesCS7A01G321100 chr2B 748425277 748425784 507 True 479 479 83.757000 8362 8869 1 chr2B.!!$R3 507
4 TraesCS7A01G321100 chr2D 613098184 613098691 507 True 451 451 82.745000 8362 8869 1 chr2D.!!$R1 507
5 TraesCS7A01G321100 chr2A 744785427 744785934 507 True 407 407 81.176000 8362 8869 1 chr2A.!!$R2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 286 0.179121 CTCTGCTCTGCTCTGCTCTG 60.179 60.000 0.00 0.00 0.00 3.35 F
327 340 1.141645 TGATCGTTCGTTCGTTTGGG 58.858 50.000 0.00 0.00 0.00 4.12 F
706 726 1.291184 CGAAATGGCTGTCTGACGCA 61.291 55.000 20.24 10.84 0.00 5.24 F
1983 2229 1.357137 TGACATGTCCCACCTTAGCA 58.643 50.000 22.85 0.00 0.00 3.49 F
3665 3915 2.517402 CGCGGAGGAGGTAGAGCT 60.517 66.667 0.00 0.00 0.00 4.09 F
4528 4778 1.299648 GTGAGTGCATACCCAGGCA 59.700 57.895 0.00 0.00 39.59 4.75 F
4773 5023 1.757118 TCTTGGTAATCCGAGCTCAGG 59.243 52.381 15.40 15.61 43.25 3.86 F
6518 6865 2.165030 ACAAGATTGCTTATGTGGCAGC 59.835 45.455 0.00 0.00 40.90 5.25 F
6877 7224 0.038166 AACGACACATGCCTTCCCAT 59.962 50.000 0.00 0.00 0.00 4.00 F
6878 7225 0.038166 ACGACACATGCCTTCCCATT 59.962 50.000 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1192 1435 5.251700 ACTTCAGTTTCCCTTCATCTACCAT 59.748 40.000 0.00 0.00 0.00 3.55 R
1983 2229 6.048732 AGAGGAAAACAATTGTGTGGTTTT 57.951 33.333 12.82 8.36 44.71 2.43 R
2548 2794 1.948145 CAGGATTCCTCTCTTGCATGC 59.052 52.381 11.82 11.82 0.00 4.06 R
3689 3939 0.949397 GCGGGAACTTCGTTTTCCTT 59.051 50.000 10.77 0.00 42.10 3.36 R
4933 5204 1.281867 TCCCCGCATCAGAAAAGACAT 59.718 47.619 0.00 0.00 0.00 3.06 R
6527 6874 0.615850 CCACAAACCCCTCTCTCCTC 59.384 60.000 0.00 0.00 0.00 3.71 R
6528 6875 0.104409 ACCACAAACCCCTCTCTCCT 60.104 55.000 0.00 0.00 0.00 3.69 R
7870 8332 0.970640 TGGCGAACCTACAGCAAGTA 59.029 50.000 0.00 0.00 36.63 2.24 R
8573 9035 2.038813 TCACGCTCCATCTCCCCA 59.961 61.111 0.00 0.00 0.00 4.96 R
9089 9589 7.398829 TGTAACAAGGCTAGAATGGTAAATGA 58.601 34.615 0.00 0.00 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.678627 GCTCTCACGCTATCTTCCTGA 59.321 52.381 0.00 0.00 0.00 3.86
24 25 1.751351 TCACGCTATCTTCCTGACTGG 59.249 52.381 0.00 0.00 37.10 4.00
51 52 4.020573 CCTAAAACCCCAACCTTCCAAATC 60.021 45.833 0.00 0.00 0.00 2.17
52 53 2.024176 AACCCCAACCTTCCAAATCC 57.976 50.000 0.00 0.00 0.00 3.01
177 183 1.471313 CCCATATCCCCCATTTCCCT 58.529 55.000 0.00 0.00 0.00 4.20
250 256 3.499737 CGTCTCGGGGTGCAATGC 61.500 66.667 0.00 0.00 0.00 3.56
272 285 1.324740 CCTCTGCTCTGCTCTGCTCT 61.325 60.000 0.00 0.00 0.00 4.09
273 286 0.179121 CTCTGCTCTGCTCTGCTCTG 60.179 60.000 0.00 0.00 0.00 3.35
274 287 1.812093 CTGCTCTGCTCTGCTCTGC 60.812 63.158 0.00 0.00 0.00 4.26
275 288 2.233605 CTGCTCTGCTCTGCTCTGCT 62.234 60.000 0.00 0.00 0.00 4.24
276 289 1.519898 GCTCTGCTCTGCTCTGCTC 60.520 63.158 0.00 0.00 0.00 4.26
308 321 1.313812 TGGTTGGTTTCCGCGTGTTT 61.314 50.000 4.92 0.00 0.00 2.83
327 340 1.141645 TGATCGTTCGTTCGTTTGGG 58.858 50.000 0.00 0.00 0.00 4.12
399 413 2.258726 GGCACGAGCGAGGGTTTTT 61.259 57.895 0.00 0.00 43.41 1.94
574 588 1.462283 CTTGATCTGCGTCAAGTGGTG 59.538 52.381 14.62 0.00 46.30 4.17
637 657 5.207768 CGATTGGACACAAAAGTTCTCTTG 58.792 41.667 0.00 0.00 40.55 3.02
706 726 1.291184 CGAAATGGCTGTCTGACGCA 61.291 55.000 20.24 10.84 0.00 5.24
782 896 2.976185 TGGTGGTTCTGGTATTCAGTGA 59.024 45.455 0.00 0.00 43.76 3.41
944 1184 4.461198 TGTGTTCCTTTTCTTTCTCTCCC 58.539 43.478 0.00 0.00 0.00 4.30
965 1205 6.007703 TCCCGTGAAAACTGATAAAAATCCT 58.992 36.000 0.00 0.00 0.00 3.24
967 1207 6.586082 CCCGTGAAAACTGATAAAAATCCTTG 59.414 38.462 0.00 0.00 0.00 3.61
971 1211 9.528018 GTGAAAACTGATAAAAATCCTTGTTGA 57.472 29.630 0.00 0.00 0.00 3.18
972 1212 9.528018 TGAAAACTGATAAAAATCCTTGTTGAC 57.472 29.630 0.00 0.00 0.00 3.18
973 1213 8.887036 AAAACTGATAAAAATCCTTGTTGACC 57.113 30.769 0.00 0.00 0.00 4.02
1341 1584 5.129980 ACTCATCAGCCATCAGATAAACTCA 59.870 40.000 0.00 0.00 0.00 3.41
1407 1650 7.510675 TTCTCTAGGGGAAATAACTGTTGAT 57.489 36.000 2.69 0.00 0.00 2.57
1751 1994 5.975693 TTGATGTCAACCCTTTTGGATAC 57.024 39.130 0.00 0.00 44.07 2.24
1840 2086 6.785191 ACTGATGTTTACTTGTTGTGTTGAG 58.215 36.000 0.00 0.00 0.00 3.02
1854 2100 2.348666 GTGTTGAGCGTCATATGACACC 59.651 50.000 30.15 21.33 44.99 4.16
1870 2116 5.089970 TGACACCTTATCCATGTCTCTTG 57.910 43.478 5.32 0.00 42.65 3.02
1983 2229 1.357137 TGACATGTCCCACCTTAGCA 58.643 50.000 22.85 0.00 0.00 3.49
2118 2364 9.112725 TCTTGTTATATGTTGTTCCATCTGATG 57.887 33.333 10.71 10.71 0.00 3.07
2223 2469 7.265673 TCCAGAAGAAACTTATATTGTCTCCG 58.734 38.462 0.00 0.00 0.00 4.63
2349 2595 4.811557 GGATACTTTCTGATCAAGGGAACG 59.188 45.833 0.00 0.00 0.00 3.95
2620 2866 7.759465 AGCAAAATCTATCTTGACTTGTGATG 58.241 34.615 0.00 0.00 0.00 3.07
2684 2930 4.910458 ATTACTAGCAAGGAACCTGTGT 57.090 40.909 0.00 0.00 0.00 3.72
2785 3031 5.707298 GCCTGCAAGCTTTATATAGATTGGA 59.293 40.000 18.67 15.92 40.82 3.53
2960 3208 7.928167 TGTCCTACTTAGATCTGTTATGCAATG 59.072 37.037 5.18 0.00 0.00 2.82
3140 3390 4.929146 ATTTCCTGGGGCCAGTATATAC 57.071 45.455 4.39 4.60 42.15 1.47
3566 3816 9.638176 ACAGATAAGGAAGCTTTTGATATGATT 57.362 29.630 0.00 0.00 0.00 2.57
3665 3915 2.517402 CGCGGAGGAGGTAGAGCT 60.517 66.667 0.00 0.00 0.00 4.09
3800 4050 6.245408 AGCACTTTTCTTGGGTTACATGATA 58.755 36.000 0.00 0.00 33.78 2.15
4237 4487 4.941263 ACGCATAGTGGTTCATGTACATTT 59.059 37.500 5.37 0.00 0.00 2.32
4407 4657 3.369892 GCTCTGTGATGAGGAAGCCTTTA 60.370 47.826 0.00 0.00 31.76 1.85
4528 4778 1.299648 GTGAGTGCATACCCAGGCA 59.700 57.895 0.00 0.00 39.59 4.75
4679 4929 2.634453 CCTGAAGTCCATTTGCCCTTTT 59.366 45.455 0.00 0.00 0.00 2.27
4773 5023 1.757118 TCTTGGTAATCCGAGCTCAGG 59.243 52.381 15.40 15.61 43.25 3.86
4933 5204 5.938125 GGGACAAGCTACATAAAGAAGTTCA 59.062 40.000 5.50 0.00 0.00 3.18
5438 5709 6.346838 GCCAAAATGCAATAGTTTCAGTCAAC 60.347 38.462 0.00 0.00 0.00 3.18
5952 6273 8.408043 TCAAACTGAAATTCCTCATATGTTGT 57.592 30.769 1.90 0.00 0.00 3.32
5965 6286 7.336679 TCCTCATATGTTGTGTTTCTACAATGG 59.663 37.037 1.90 0.00 42.02 3.16
6101 6424 7.595819 AAACAGTCTGAAAAATTCCCATGTA 57.404 32.000 6.91 0.00 0.00 2.29
6223 6569 9.495382 ACTCCCTCTGTAAACTAATCTAAAGAT 57.505 33.333 0.00 0.00 36.07 2.40
6328 6675 2.821969 GCAGCCTGGAAATGAAGAGAAA 59.178 45.455 0.00 0.00 0.00 2.52
6409 6756 3.711704 AGAGTTCACTTGAGTTTGGGAGA 59.288 43.478 0.00 0.00 0.00 3.71
6449 6796 7.979786 ATCAAGGACTCCTATCTTTGTTAGA 57.020 36.000 0.00 0.00 37.08 2.10
6450 6797 7.171630 TCAAGGACTCCTATCTTTGTTAGAC 57.828 40.000 0.00 0.00 37.08 2.59
6451 6798 6.954684 TCAAGGACTCCTATCTTTGTTAGACT 59.045 38.462 0.00 0.00 37.08 3.24
6452 6799 8.114102 TCAAGGACTCCTATCTTTGTTAGACTA 58.886 37.037 0.00 0.00 37.08 2.59
6453 6800 8.410141 CAAGGACTCCTATCTTTGTTAGACTAG 58.590 40.741 0.00 0.00 30.77 2.57
6454 6801 7.645002 AGGACTCCTATCTTTGTTAGACTAGT 58.355 38.462 0.00 0.00 35.19 2.57
6455 6802 7.776500 AGGACTCCTATCTTTGTTAGACTAGTC 59.224 40.741 15.41 15.41 35.19 2.59
6456 6803 7.556996 GGACTCCTATCTTTGTTAGACTAGTCA 59.443 40.741 24.44 8.16 34.91 3.41
6457 6804 8.283699 ACTCCTATCTTTGTTAGACTAGTCAC 57.716 38.462 24.44 14.98 35.19 3.67
6458 6805 7.889073 ACTCCTATCTTTGTTAGACTAGTCACA 59.111 37.037 24.44 17.34 35.19 3.58
6459 6806 8.645814 TCCTATCTTTGTTAGACTAGTCACAA 57.354 34.615 24.44 21.66 35.19 3.33
6460 6807 9.256228 TCCTATCTTTGTTAGACTAGTCACAAT 57.744 33.333 24.44 13.64 35.19 2.71
6461 6808 9.307121 CCTATCTTTGTTAGACTAGTCACAATG 57.693 37.037 24.44 23.49 35.19 2.82
6462 6809 9.307121 CTATCTTTGTTAGACTAGTCACAATGG 57.693 37.037 25.55 20.56 35.19 3.16
6463 6810 6.464222 TCTTTGTTAGACTAGTCACAATGGG 58.536 40.000 25.55 19.06 29.49 4.00
6464 6811 6.269077 TCTTTGTTAGACTAGTCACAATGGGA 59.731 38.462 25.55 20.22 29.49 4.37
6465 6812 5.661056 TGTTAGACTAGTCACAATGGGAG 57.339 43.478 24.44 0.00 0.00 4.30
6466 6813 5.084519 TGTTAGACTAGTCACAATGGGAGT 58.915 41.667 24.44 0.00 0.00 3.85
6467 6814 6.250711 TGTTAGACTAGTCACAATGGGAGTA 58.749 40.000 24.44 0.00 0.00 2.59
6468 6815 6.722590 TGTTAGACTAGTCACAATGGGAGTAA 59.277 38.462 24.44 7.58 0.00 2.24
6469 6816 5.662674 AGACTAGTCACAATGGGAGTAAC 57.337 43.478 24.44 0.00 0.00 2.50
6470 6817 5.334421 AGACTAGTCACAATGGGAGTAACT 58.666 41.667 24.44 1.97 0.00 2.24
6471 6818 5.780793 AGACTAGTCACAATGGGAGTAACTT 59.219 40.000 24.44 0.00 0.00 2.66
6472 6819 6.952358 AGACTAGTCACAATGGGAGTAACTTA 59.048 38.462 24.44 0.00 0.00 2.24
6473 6820 7.453752 AGACTAGTCACAATGGGAGTAACTTAA 59.546 37.037 24.44 0.00 0.00 1.85
6474 6821 7.612677 ACTAGTCACAATGGGAGTAACTTAAG 58.387 38.462 1.34 0.00 0.00 1.85
6475 6822 6.435292 AGTCACAATGGGAGTAACTTAAGT 57.565 37.500 1.12 1.12 0.00 2.24
6476 6823 7.549147 AGTCACAATGGGAGTAACTTAAGTA 57.451 36.000 8.92 0.00 0.00 2.24
6477 6824 7.612677 AGTCACAATGGGAGTAACTTAAGTAG 58.387 38.462 8.92 0.00 0.00 2.57
6478 6825 7.234988 AGTCACAATGGGAGTAACTTAAGTAGT 59.765 37.037 8.92 0.00 39.32 2.73
6479 6826 8.526147 GTCACAATGGGAGTAACTTAAGTAGTA 58.474 37.037 8.92 0.00 35.54 1.82
6480 6827 9.092338 TCACAATGGGAGTAACTTAAGTAGTAA 57.908 33.333 8.92 0.00 35.54 2.24
6481 6828 9.148104 CACAATGGGAGTAACTTAAGTAGTAAC 57.852 37.037 8.92 5.50 35.54 2.50
6482 6829 8.873144 ACAATGGGAGTAACTTAAGTAGTAACA 58.127 33.333 8.92 5.06 35.54 2.41
6483 6830 9.886132 CAATGGGAGTAACTTAAGTAGTAACAT 57.114 33.333 8.92 7.10 35.54 2.71
6485 6832 8.654485 TGGGAGTAACTTAAGTAGTAACATCA 57.346 34.615 8.92 0.00 35.54 3.07
6486 6833 8.526147 TGGGAGTAACTTAAGTAGTAACATCAC 58.474 37.037 8.92 2.86 35.54 3.06
6487 6834 8.526147 GGGAGTAACTTAAGTAGTAACATCACA 58.474 37.037 8.92 0.00 35.54 3.58
6488 6835 9.351570 GGAGTAACTTAAGTAGTAACATCACAC 57.648 37.037 8.92 0.00 35.54 3.82
6489 6836 9.903682 GAGTAACTTAAGTAGTAACATCACACA 57.096 33.333 8.92 0.00 35.54 3.72
6494 6841 9.772973 ACTTAAGTAGTAACATCACACATTTCA 57.227 29.630 6.26 0.00 34.56 2.69
6499 6846 9.719355 AGTAGTAACATCACACATTTCAATACA 57.281 29.630 0.00 0.00 0.00 2.29
6502 6849 9.283768 AGTAACATCACACATTTCAATACAAGA 57.716 29.630 0.00 0.00 0.00 3.02
6505 6852 8.975410 ACATCACACATTTCAATACAAGATTG 57.025 30.769 0.00 0.00 0.00 2.67
6506 6853 7.543172 ACATCACACATTTCAATACAAGATTGC 59.457 33.333 0.00 0.00 0.00 3.56
6507 6854 7.218228 TCACACATTTCAATACAAGATTGCT 57.782 32.000 0.00 0.00 0.00 3.91
6508 6855 7.660112 TCACACATTTCAATACAAGATTGCTT 58.340 30.769 0.00 0.00 33.74 3.91
6509 6856 8.791675 TCACACATTTCAATACAAGATTGCTTA 58.208 29.630 0.00 0.00 31.81 3.09
6510 6857 9.577110 CACACATTTCAATACAAGATTGCTTAT 57.423 29.630 0.00 0.00 31.81 1.73
6511 6858 9.577110 ACACATTTCAATACAAGATTGCTTATG 57.423 29.630 0.00 0.00 31.81 1.90
6512 6859 9.577110 CACATTTCAATACAAGATTGCTTATGT 57.423 29.630 0.00 0.00 31.81 2.29
6513 6860 9.577110 ACATTTCAATACAAGATTGCTTATGTG 57.423 29.630 0.00 0.00 31.81 3.21
6514 6861 9.027129 CATTTCAATACAAGATTGCTTATGTGG 57.973 33.333 0.00 0.00 31.81 4.17
6515 6862 6.135290 TCAATACAAGATTGCTTATGTGGC 57.865 37.500 0.00 0.00 31.81 5.01
6516 6863 5.651576 TCAATACAAGATTGCTTATGTGGCA 59.348 36.000 0.00 0.00 37.97 4.92
6517 6864 5.762825 ATACAAGATTGCTTATGTGGCAG 57.237 39.130 0.00 0.00 40.90 4.85
6518 6865 2.165030 ACAAGATTGCTTATGTGGCAGC 59.835 45.455 0.00 0.00 40.90 5.25
6519 6866 2.426024 CAAGATTGCTTATGTGGCAGCT 59.574 45.455 0.00 0.00 40.90 4.24
6520 6867 3.565764 AGATTGCTTATGTGGCAGCTA 57.434 42.857 0.00 0.00 40.90 3.32
6521 6868 3.889815 AGATTGCTTATGTGGCAGCTAA 58.110 40.909 0.00 0.00 40.90 3.09
6522 6869 4.467769 AGATTGCTTATGTGGCAGCTAAT 58.532 39.130 0.00 0.00 40.90 1.73
6523 6870 4.891756 AGATTGCTTATGTGGCAGCTAATT 59.108 37.500 0.00 0.00 40.90 1.40
6524 6871 6.064060 AGATTGCTTATGTGGCAGCTAATTA 58.936 36.000 0.00 0.00 40.90 1.40
6525 6872 6.547141 AGATTGCTTATGTGGCAGCTAATTAA 59.453 34.615 0.00 0.00 40.90 1.40
6526 6873 6.713762 TTGCTTATGTGGCAGCTAATTAAT 57.286 33.333 0.00 0.00 40.90 1.40
6527 6874 6.075762 TGCTTATGTGGCAGCTAATTAATG 57.924 37.500 0.00 0.00 36.92 1.90
6528 6875 5.827267 TGCTTATGTGGCAGCTAATTAATGA 59.173 36.000 0.00 0.00 36.92 2.57
6529 6876 6.016860 TGCTTATGTGGCAGCTAATTAATGAG 60.017 38.462 0.00 0.00 36.92 2.90
6530 6877 6.569226 GCTTATGTGGCAGCTAATTAATGAGG 60.569 42.308 1.84 0.00 32.87 3.86
6531 6878 4.502105 TGTGGCAGCTAATTAATGAGGA 57.498 40.909 1.84 0.00 0.00 3.71
6532 6879 4.454678 TGTGGCAGCTAATTAATGAGGAG 58.545 43.478 1.84 0.00 0.00 3.69
6533 6880 4.164030 TGTGGCAGCTAATTAATGAGGAGA 59.836 41.667 1.84 0.00 0.00 3.71
6534 6881 4.754114 GTGGCAGCTAATTAATGAGGAGAG 59.246 45.833 1.84 0.00 0.00 3.20
6535 6882 4.655649 TGGCAGCTAATTAATGAGGAGAGA 59.344 41.667 1.84 0.00 0.00 3.10
6536 6883 5.221601 TGGCAGCTAATTAATGAGGAGAGAG 60.222 44.000 1.84 0.00 0.00 3.20
6537 6884 5.237048 GCAGCTAATTAATGAGGAGAGAGG 58.763 45.833 1.84 0.00 0.00 3.69
6538 6885 5.792741 CAGCTAATTAATGAGGAGAGAGGG 58.207 45.833 1.84 0.00 0.00 4.30
6539 6886 4.843516 AGCTAATTAATGAGGAGAGAGGGG 59.156 45.833 1.84 0.00 0.00 4.79
6540 6887 4.595350 GCTAATTAATGAGGAGAGAGGGGT 59.405 45.833 1.84 0.00 0.00 4.95
6541 6888 5.072464 GCTAATTAATGAGGAGAGAGGGGTT 59.928 44.000 1.84 0.00 0.00 4.11
6542 6889 6.409810 GCTAATTAATGAGGAGAGAGGGGTTT 60.410 42.308 1.84 0.00 0.00 3.27
6543 6890 4.844349 TTAATGAGGAGAGAGGGGTTTG 57.156 45.455 0.00 0.00 0.00 2.93
6544 6891 2.350863 ATGAGGAGAGAGGGGTTTGT 57.649 50.000 0.00 0.00 0.00 2.83
6545 6892 1.352083 TGAGGAGAGAGGGGTTTGTG 58.648 55.000 0.00 0.00 0.00 3.33
6546 6893 0.615850 GAGGAGAGAGGGGTTTGTGG 59.384 60.000 0.00 0.00 0.00 4.17
6547 6894 0.104409 AGGAGAGAGGGGTTTGTGGT 60.104 55.000 0.00 0.00 0.00 4.16
6548 6895 1.151413 AGGAGAGAGGGGTTTGTGGTA 59.849 52.381 0.00 0.00 0.00 3.25
6549 6896 1.982958 GGAGAGAGGGGTTTGTGGTAA 59.017 52.381 0.00 0.00 0.00 2.85
6550 6897 2.290134 GGAGAGAGGGGTTTGTGGTAAC 60.290 54.545 0.00 0.00 0.00 2.50
6551 6898 2.638363 GAGAGAGGGGTTTGTGGTAACT 59.362 50.000 0.00 0.00 37.61 2.24
6552 6899 3.053826 AGAGAGGGGTTTGTGGTAACTT 58.946 45.455 0.00 0.00 37.61 2.66
6553 6900 4.237018 AGAGAGGGGTTTGTGGTAACTTA 58.763 43.478 0.00 0.00 37.61 2.24
6554 6901 4.286291 AGAGAGGGGTTTGTGGTAACTTAG 59.714 45.833 0.00 0.00 37.61 2.18
6555 6902 3.079578 GAGGGGTTTGTGGTAACTTAGC 58.920 50.000 0.00 0.00 37.61 3.09
6556 6903 2.714793 AGGGGTTTGTGGTAACTTAGCT 59.285 45.455 0.00 0.00 37.61 3.32
6557 6904 3.911894 AGGGGTTTGTGGTAACTTAGCTA 59.088 43.478 0.00 0.00 37.61 3.32
6558 6905 4.019591 AGGGGTTTGTGGTAACTTAGCTAG 60.020 45.833 0.00 0.00 37.61 3.42
6559 6906 4.263199 GGGGTTTGTGGTAACTTAGCTAGT 60.263 45.833 0.00 0.00 39.32 2.57
6561 6908 6.466812 GGGTTTGTGGTAACTTAGCTAGTTA 58.533 40.000 10.09 10.09 45.22 2.24
6573 6920 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
6574 6921 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
6575 6922 8.027771 ACTTAGCTAGTTACTGTAACATCACAC 58.972 37.037 27.12 13.16 41.07 3.82
6576 6923 6.340962 AGCTAGTTACTGTAACATCACACA 57.659 37.500 27.12 7.11 41.07 3.72
6577 6924 6.936279 AGCTAGTTACTGTAACATCACACAT 58.064 36.000 27.12 10.64 41.07 3.21
6578 6925 7.386851 AGCTAGTTACTGTAACATCACACATT 58.613 34.615 27.12 10.04 41.07 2.71
6579 6926 7.878127 AGCTAGTTACTGTAACATCACACATTT 59.122 33.333 27.12 9.43 41.07 2.32
6580 6927 8.169268 GCTAGTTACTGTAACATCACACATTTC 58.831 37.037 27.12 1.55 41.07 2.17
6581 6928 9.203421 CTAGTTACTGTAACATCACACATTTCA 57.797 33.333 27.12 0.05 41.07 2.69
6582 6929 8.445275 AGTTACTGTAACATCACACATTTCAA 57.555 30.769 27.12 0.00 41.07 2.69
6583 6930 8.559536 AGTTACTGTAACATCACACATTTCAAG 58.440 33.333 27.12 0.00 41.07 3.02
6584 6931 6.317789 ACTGTAACATCACACATTTCAAGG 57.682 37.500 0.00 0.00 0.00 3.61
6585 6932 5.119931 TGTAACATCACACATTTCAAGGC 57.880 39.130 0.00 0.00 0.00 4.35
6586 6933 4.582240 TGTAACATCACACATTTCAAGGCA 59.418 37.500 0.00 0.00 0.00 4.75
6587 6934 4.877378 AACATCACACATTTCAAGGCAT 57.123 36.364 0.00 0.00 0.00 4.40
6588 6935 5.981088 AACATCACACATTTCAAGGCATA 57.019 34.783 0.00 0.00 0.00 3.14
6589 6936 5.981088 ACATCACACATTTCAAGGCATAA 57.019 34.783 0.00 0.00 0.00 1.90
6590 6937 6.534475 ACATCACACATTTCAAGGCATAAT 57.466 33.333 0.00 0.00 0.00 1.28
6591 6938 6.334989 ACATCACACATTTCAAGGCATAATG 58.665 36.000 0.00 0.00 35.82 1.90
6592 6939 6.153170 ACATCACACATTTCAAGGCATAATGA 59.847 34.615 0.00 0.00 34.28 2.57
6593 6940 6.198650 TCACACATTTCAAGGCATAATGAG 57.801 37.500 0.00 0.00 34.28 2.90
6594 6941 5.711506 TCACACATTTCAAGGCATAATGAGT 59.288 36.000 0.00 0.00 34.77 3.41
6595 6942 6.032094 CACACATTTCAAGGCATAATGAGTC 58.968 40.000 0.00 0.00 33.04 3.36
6596 6943 5.948162 ACACATTTCAAGGCATAATGAGTCT 59.052 36.000 0.00 0.00 30.71 3.24
6597 6944 7.066163 CACACATTTCAAGGCATAATGAGTCTA 59.934 37.037 0.00 0.00 33.04 2.59
6598 6945 7.776969 ACACATTTCAAGGCATAATGAGTCTAT 59.223 33.333 0.00 0.00 30.71 1.98
6599 6946 9.276590 CACATTTCAAGGCATAATGAGTCTATA 57.723 33.333 0.00 0.00 34.28 1.31
6600 6947 9.499479 ACATTTCAAGGCATAATGAGTCTATAG 57.501 33.333 0.00 0.00 34.28 1.31
6601 6948 7.969536 TTTCAAGGCATAATGAGTCTATAGC 57.030 36.000 0.00 0.00 0.00 2.97
6602 6949 6.042638 TCAAGGCATAATGAGTCTATAGCC 57.957 41.667 0.00 0.00 41.08 3.93
6648 6995 9.293404 TGATACTACTCATATGTTACTACCCAC 57.707 37.037 1.90 0.00 0.00 4.61
6649 6996 9.517868 GATACTACTCATATGTTACTACCCACT 57.482 37.037 1.90 0.00 0.00 4.00
6652 6999 9.298250 ACTACTCATATGTTACTACCCACTATG 57.702 37.037 1.90 0.00 0.00 2.23
6653 7000 7.540474 ACTCATATGTTACTACCCACTATGG 57.460 40.000 1.90 0.00 37.25 2.74
6654 7001 7.302948 ACTCATATGTTACTACCCACTATGGA 58.697 38.462 1.90 0.00 40.96 3.41
6655 7002 7.451877 ACTCATATGTTACTACCCACTATGGAG 59.548 40.741 1.90 0.00 40.96 3.86
6656 7003 6.724441 TCATATGTTACTACCCACTATGGAGG 59.276 42.308 1.90 0.00 40.96 4.30
6657 7004 4.341863 TGTTACTACCCACTATGGAGGT 57.658 45.455 0.00 1.66 40.96 3.85
6658 7005 5.470755 TGTTACTACCCACTATGGAGGTA 57.529 43.478 0.00 3.53 40.96 3.08
6664 7011 4.341863 ACCCACTATGGAGGTAGTAACA 57.658 45.455 0.00 0.00 40.96 2.41
6665 7012 4.892198 ACCCACTATGGAGGTAGTAACAT 58.108 43.478 0.00 0.00 40.96 2.71
6666 7013 6.034442 ACCCACTATGGAGGTAGTAACATA 57.966 41.667 0.00 0.00 40.96 2.29
6667 7014 6.075984 ACCCACTATGGAGGTAGTAACATAG 58.924 44.000 8.52 8.52 45.07 2.23
6668 7015 6.125979 ACCCACTATGGAGGTAGTAACATAGA 60.126 42.308 15.14 0.00 43.28 1.98
6669 7016 6.208994 CCCACTATGGAGGTAGTAACATAGAC 59.791 46.154 15.14 0.00 43.28 2.59
6670 7017 7.005296 CCACTATGGAGGTAGTAACATAGACT 58.995 42.308 15.14 0.00 43.28 3.24
6671 7018 8.162085 CCACTATGGAGGTAGTAACATAGACTA 58.838 40.741 15.14 0.00 43.28 2.59
6672 7019 9.221933 CACTATGGAGGTAGTAACATAGACTAG 57.778 40.741 15.14 0.00 43.28 2.57
6673 7020 8.947305 ACTATGGAGGTAGTAACATAGACTAGT 58.053 37.037 15.14 0.00 43.28 2.57
6676 7023 8.970859 TGGAGGTAGTAACATAGACTAGTAAC 57.029 38.462 0.00 0.00 30.08 2.50
6677 7024 8.551440 TGGAGGTAGTAACATAGACTAGTAACA 58.449 37.037 0.00 0.00 30.08 2.41
6678 7025 9.571816 GGAGGTAGTAACATAGACTAGTAACAT 57.428 37.037 0.00 0.00 30.08 2.71
6705 7052 9.953697 CATCAAGTTACTACTCTATGTTACTCC 57.046 37.037 0.00 0.00 31.99 3.85
6706 7053 8.517062 TCAAGTTACTACTCTATGTTACTCCC 57.483 38.462 0.00 0.00 31.99 4.30
6707 7054 7.559170 TCAAGTTACTACTCTATGTTACTCCCC 59.441 40.741 0.00 0.00 31.99 4.81
6708 7055 6.978261 AGTTACTACTCTATGTTACTCCCCA 58.022 40.000 0.00 0.00 0.00 4.96
6709 7056 6.832900 AGTTACTACTCTATGTTACTCCCCAC 59.167 42.308 0.00 0.00 0.00 4.61
6710 7057 5.469210 ACTACTCTATGTTACTCCCCACT 57.531 43.478 0.00 0.00 0.00 4.00
6711 7058 5.202004 ACTACTCTATGTTACTCCCCACTG 58.798 45.833 0.00 0.00 0.00 3.66
6712 7059 4.062490 ACTCTATGTTACTCCCCACTGT 57.938 45.455 0.00 0.00 0.00 3.55
6713 7060 3.769844 ACTCTATGTTACTCCCCACTGTG 59.230 47.826 0.00 0.00 0.00 3.66
6714 7061 4.023980 CTCTATGTTACTCCCCACTGTGA 58.976 47.826 9.86 0.00 0.00 3.58
6715 7062 4.023980 TCTATGTTACTCCCCACTGTGAG 58.976 47.826 9.86 1.17 34.73 3.51
6716 7063 0.685097 TGTTACTCCCCACTGTGAGC 59.315 55.000 9.86 0.00 31.65 4.26
6717 7064 0.685097 GTTACTCCCCACTGTGAGCA 59.315 55.000 9.86 0.00 31.65 4.26
6793 7140 5.880054 TTTCCCATCTTCGATCAGTTTTC 57.120 39.130 0.00 0.00 0.00 2.29
6829 7176 5.479724 TGATGCCTTTCCATCAATTGTAACA 59.520 36.000 5.13 0.00 46.18 2.41
6861 7208 6.086765 GCAGAAAATACAATGTGACTTCAACG 59.913 38.462 0.00 0.00 0.00 4.10
6862 7209 7.351981 CAGAAAATACAATGTGACTTCAACGA 58.648 34.615 0.00 0.00 0.00 3.85
6863 7210 7.321271 CAGAAAATACAATGTGACTTCAACGAC 59.679 37.037 0.00 0.00 0.00 4.34
6864 7211 6.612247 AAATACAATGTGACTTCAACGACA 57.388 33.333 0.00 0.00 0.00 4.35
6865 7212 3.944422 ACAATGTGACTTCAACGACAC 57.056 42.857 0.00 0.00 0.00 3.67
6866 7213 3.266636 ACAATGTGACTTCAACGACACA 58.733 40.909 0.00 0.00 45.06 3.72
6869 7216 1.597195 TGTGACTTCAACGACACATGC 59.403 47.619 0.00 0.00 38.14 4.06
6870 7217 1.069906 GTGACTTCAACGACACATGCC 60.070 52.381 0.00 0.00 34.05 4.40
6871 7218 1.202639 TGACTTCAACGACACATGCCT 60.203 47.619 0.00 0.00 0.00 4.75
6872 7219 1.873591 GACTTCAACGACACATGCCTT 59.126 47.619 0.00 0.00 0.00 4.35
6873 7220 1.873591 ACTTCAACGACACATGCCTTC 59.126 47.619 0.00 0.00 0.00 3.46
6874 7221 1.197721 CTTCAACGACACATGCCTTCC 59.802 52.381 0.00 0.00 0.00 3.46
6875 7222 0.605319 TCAACGACACATGCCTTCCC 60.605 55.000 0.00 0.00 0.00 3.97
6876 7223 0.888736 CAACGACACATGCCTTCCCA 60.889 55.000 0.00 0.00 0.00 4.37
6877 7224 0.038166 AACGACACATGCCTTCCCAT 59.962 50.000 0.00 0.00 0.00 4.00
6878 7225 0.038166 ACGACACATGCCTTCCCATT 59.962 50.000 0.00 0.00 0.00 3.16
6879 7226 1.176527 CGACACATGCCTTCCCATTT 58.823 50.000 0.00 0.00 0.00 2.32
6880 7227 1.545582 CGACACATGCCTTCCCATTTT 59.454 47.619 0.00 0.00 0.00 1.82
6881 7228 2.415893 CGACACATGCCTTCCCATTTTC 60.416 50.000 0.00 0.00 0.00 2.29
6882 7229 1.545582 ACACATGCCTTCCCATTTTCG 59.454 47.619 0.00 0.00 0.00 3.46
6883 7230 1.818060 CACATGCCTTCCCATTTTCGA 59.182 47.619 0.00 0.00 0.00 3.71
6884 7231 2.230992 CACATGCCTTCCCATTTTCGAA 59.769 45.455 0.00 0.00 0.00 3.71
6885 7232 2.493278 ACATGCCTTCCCATTTTCGAAG 59.507 45.455 0.00 0.00 36.13 3.79
6886 7233 2.286365 TGCCTTCCCATTTTCGAAGT 57.714 45.000 0.00 0.00 34.85 3.01
6887 7234 2.593026 TGCCTTCCCATTTTCGAAGTT 58.407 42.857 0.00 0.00 34.85 2.66
6888 7235 2.962421 TGCCTTCCCATTTTCGAAGTTT 59.038 40.909 0.00 0.00 34.85 2.66
6889 7236 3.005367 TGCCTTCCCATTTTCGAAGTTTC 59.995 43.478 0.00 0.00 34.85 2.78
6890 7237 3.005367 GCCTTCCCATTTTCGAAGTTTCA 59.995 43.478 0.00 0.00 34.85 2.69
6891 7238 4.500716 GCCTTCCCATTTTCGAAGTTTCAA 60.501 41.667 0.00 0.00 34.85 2.69
6945 7298 3.305629 GTCTCTCGTGAATTCACTCATGC 59.694 47.826 30.45 15.48 44.34 4.06
7088 7530 8.601476 CCATTCTAATAGTGTTTACCTTTCGAC 58.399 37.037 0.00 0.00 0.00 4.20
7473 7935 0.607217 TCACCTCAGCTGCCATTGTG 60.607 55.000 9.47 11.10 0.00 3.33
7523 7985 9.529325 TCGTATTTCTGTTCTGTTCTAATATGG 57.471 33.333 0.00 0.00 0.00 2.74
7524 7986 9.314321 CGTATTTCTGTTCTGTTCTAATATGGT 57.686 33.333 0.00 0.00 0.00 3.55
7546 8008 7.927788 TGGTAATACCTGCATATGAACCATAT 58.072 34.615 11.16 0.00 39.58 1.78
7592 8054 3.369242 ACTCCTATATACTCCCTCCGC 57.631 52.381 0.00 0.00 0.00 5.54
7627 8089 2.540973 GCCTCACTGTTTTCCGTGTTTC 60.541 50.000 0.00 0.00 36.61 2.78
7839 8301 2.350899 TTTGCCGCTTGATTGACATG 57.649 45.000 0.00 0.00 0.00 3.21
7959 8421 5.656416 AGTTGTTGGTCTTTTGGATTCTCAA 59.344 36.000 0.00 0.00 0.00 3.02
8250 8712 5.227805 GCAAATTAACATACACGTCATGCAG 59.772 40.000 6.58 0.00 0.00 4.41
8573 9035 1.441732 GGTTCGGCGGTGTCAAGTTT 61.442 55.000 7.21 0.00 0.00 2.66
9089 9589 1.538047 CCACAAACAGGTGCTATGCT 58.462 50.000 0.00 0.00 37.46 3.79
9127 9629 3.589988 CTTGTTACATCTCGAGGTTGCT 58.410 45.455 13.56 4.96 0.00 3.91
9128 9630 4.381612 CCTTGTTACATCTCGAGGTTGCTA 60.382 45.833 13.56 4.11 32.24 3.49
9129 9631 5.339008 TTGTTACATCTCGAGGTTGCTAT 57.661 39.130 13.56 0.00 0.00 2.97
9130 9632 4.682787 TGTTACATCTCGAGGTTGCTATG 58.317 43.478 13.56 10.12 0.00 2.23
9131 9633 2.231215 ACATCTCGAGGTTGCTATGC 57.769 50.000 13.56 0.00 0.00 3.14
9132 9634 1.135046 CATCTCGAGGTTGCTATGCG 58.865 55.000 13.56 0.00 0.00 4.73
9133 9635 0.598680 ATCTCGAGGTTGCTATGCGC 60.599 55.000 13.56 0.00 39.77 6.09
9144 9646 3.352554 TGCTATGCGCATTTACCATTG 57.647 42.857 30.42 5.00 45.47 2.82
9145 9647 2.687425 TGCTATGCGCATTTACCATTGT 59.313 40.909 30.42 2.58 45.47 2.71
9146 9648 3.879892 TGCTATGCGCATTTACCATTGTA 59.120 39.130 30.42 4.97 45.47 2.41
9147 9649 4.024133 TGCTATGCGCATTTACCATTGTAG 60.024 41.667 30.42 16.18 45.47 2.74
9148 9650 2.842208 TGCGCATTTACCATTGTAGC 57.158 45.000 5.66 0.00 0.00 3.58
9149 9651 1.403679 TGCGCATTTACCATTGTAGCC 59.596 47.619 5.66 0.00 0.00 3.93
9150 9652 1.676006 GCGCATTTACCATTGTAGCCT 59.324 47.619 0.30 0.00 0.00 4.58
9151 9653 2.099098 GCGCATTTACCATTGTAGCCTT 59.901 45.455 0.30 0.00 0.00 4.35
9152 9654 3.694734 CGCATTTACCATTGTAGCCTTG 58.305 45.455 0.00 0.00 0.00 3.61
9153 9655 3.128589 CGCATTTACCATTGTAGCCTTGT 59.871 43.478 0.00 0.00 0.00 3.16
9154 9656 4.380444 CGCATTTACCATTGTAGCCTTGTT 60.380 41.667 0.00 0.00 0.00 2.83
9155 9657 5.163703 CGCATTTACCATTGTAGCCTTGTTA 60.164 40.000 0.00 0.00 0.00 2.41
9156 9658 6.033966 GCATTTACCATTGTAGCCTTGTTAC 58.966 40.000 0.00 0.00 0.00 2.50
9157 9659 6.349777 GCATTTACCATTGTAGCCTTGTTACA 60.350 38.462 0.00 0.00 0.00 2.41
9158 9660 7.630513 GCATTTACCATTGTAGCCTTGTTACAT 60.631 37.037 0.00 0.00 30.10 2.29
9159 9661 6.995511 TTACCATTGTAGCCTTGTTACATC 57.004 37.500 0.00 0.00 30.10 3.06
9160 9662 5.179452 ACCATTGTAGCCTTGTTACATCT 57.821 39.130 0.00 0.00 30.10 2.90
9161 9663 5.186198 ACCATTGTAGCCTTGTTACATCTC 58.814 41.667 0.00 0.00 30.10 2.75
9162 9664 4.271049 CCATTGTAGCCTTGTTACATCTCG 59.729 45.833 0.00 0.00 30.10 4.04
9163 9665 4.794278 TTGTAGCCTTGTTACATCTCGA 57.206 40.909 0.00 0.00 30.10 4.04
9164 9666 4.371855 TGTAGCCTTGTTACATCTCGAG 57.628 45.455 5.93 5.93 0.00 4.04
9165 9667 2.969628 AGCCTTGTTACATCTCGAGG 57.030 50.000 13.56 0.00 38.05 4.63
9166 9668 2.180276 AGCCTTGTTACATCTCGAGGT 58.820 47.619 13.56 0.96 37.50 3.85
9167 9669 2.567615 AGCCTTGTTACATCTCGAGGTT 59.432 45.455 13.56 0.00 37.50 3.50
9168 9670 2.673368 GCCTTGTTACATCTCGAGGTTG 59.327 50.000 13.56 13.12 37.50 3.77
9169 9671 2.673368 CCTTGTTACATCTCGAGGTTGC 59.327 50.000 13.56 1.15 32.24 4.17
9287 9789 2.591923 TGCCACATTTTCTGCCAGTTA 58.408 42.857 0.00 0.00 0.00 2.24
9291 9793 3.928375 CCACATTTTCTGCCAGTTATTGC 59.072 43.478 0.00 0.00 0.00 3.56
9334 9836 7.914465 TGTGTTTGCAAATACAAAAATTCCTC 58.086 30.769 31.68 9.06 40.99 3.71
9425 9927 0.035458 CCTCTTGGGTCGCAGTTTCT 59.965 55.000 0.00 0.00 0.00 2.52
9448 9950 6.043243 TCTCTTGGAGTAACAAAAGAGACCAT 59.957 38.462 9.33 0.00 45.97 3.55
9465 9967 2.105821 ACCATCTGTCCTTGGAACGAAA 59.894 45.455 0.00 0.00 36.79 3.46
9476 9978 7.881232 TGTCCTTGGAACGAAATAATAGTCTTT 59.119 33.333 0.00 0.00 0.00 2.52
9629 10216 6.260936 AGAAAATGATACATGTCCACGGATTC 59.739 38.462 0.00 0.96 0.00 2.52
9784 10372 9.458374 AATTAACGAATTTGTGGAAAGTGTTAG 57.542 29.630 0.00 0.00 30.77 2.34
9861 10450 6.599244 TGTCCATGATTCCAAGAACTATTCAC 59.401 38.462 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.913451 AGGCAGCCAGTCAGGAAGAT 60.913 55.000 15.80 0.00 41.22 2.40
15 16 1.064003 TTTTAGGCAGCCAGTCAGGA 58.936 50.000 15.80 0.00 41.22 3.86
20 21 1.076727 GGGGTTTTAGGCAGCCAGT 59.923 57.895 15.80 0.00 33.04 4.00
24 25 0.541998 AGGTTGGGGTTTTAGGCAGC 60.542 55.000 0.00 0.00 0.00 5.25
164 170 0.491371 AAAAGCAGGGAAATGGGGGA 59.509 50.000 0.00 0.00 0.00 4.81
177 183 6.454795 AGAAACAAAACAAGAGACAAAAGCA 58.545 32.000 0.00 0.00 0.00 3.91
282 295 2.485795 GGAAACCAACCACAGCGCA 61.486 57.895 11.47 0.00 0.00 6.09
308 321 1.141645 CCCAAACGAACGAACGATCA 58.858 50.000 11.97 0.00 37.03 2.92
437 451 1.388547 AAACGAAAAGCAGAGCACCA 58.611 45.000 0.00 0.00 0.00 4.17
574 588 1.316651 GGCAGCAGATGGAGAAATCC 58.683 55.000 0.00 0.00 0.00 3.01
637 657 7.493313 CAGCAATCTAACAAAACGTCAATTTC 58.507 34.615 0.00 0.00 0.00 2.17
679 699 1.463444 GACAGCCATTTCGCGTAAACT 59.537 47.619 5.77 0.00 0.00 2.66
738 758 7.558444 ACCAACAATTTCCTAGACAGTAACAAA 59.442 33.333 0.00 0.00 0.00 2.83
782 896 3.480470 CTCCACAAGACAAGACATTGGT 58.520 45.455 0.00 0.00 40.97 3.67
944 1184 8.479280 CAACAAGGATTTTTATCAGTTTTCACG 58.521 33.333 0.00 0.00 0.00 4.35
965 1205 1.953686 GTAGCTGCCAAAGGTCAACAA 59.046 47.619 0.00 0.00 37.85 2.83
967 1207 0.881796 GGTAGCTGCCAAAGGTCAAC 59.118 55.000 16.95 0.00 37.85 3.18
971 1211 2.351276 CGGGTAGCTGCCAAAGGT 59.649 61.111 23.21 0.00 40.55 3.50
972 1212 2.438434 CCGGGTAGCTGCCAAAGG 60.438 66.667 23.21 17.54 0.00 3.11
973 1213 2.040544 CACCGGGTAGCTGCCAAAG 61.041 63.158 23.21 12.35 0.00 2.77
1192 1435 5.251700 ACTTCAGTTTCCCTTCATCTACCAT 59.748 40.000 0.00 0.00 0.00 3.55
1341 1584 6.438425 GCCCATGGGAGATAAAATCATTGTAT 59.562 38.462 36.00 0.00 37.50 2.29
1407 1650 7.092712 ACACTCTTTGAAGGATCATAATCAGGA 60.093 37.037 0.00 0.00 34.96 3.86
1734 1977 8.349568 AGAAAATAGTATCCAAAAGGGTTGAC 57.650 34.615 0.00 0.00 38.11 3.18
1983 2229 6.048732 AGAGGAAAACAATTGTGTGGTTTT 57.951 33.333 12.82 8.36 44.71 2.43
2078 2324 9.072375 ACATATAACAAGATCTCAGATTCTCGA 57.928 33.333 0.00 0.00 0.00 4.04
2392 2638 9.205719 CAATGATTATTGTGGAAACATGTTCAA 57.794 29.630 12.39 11.85 46.14 2.69
2548 2794 1.948145 CAGGATTCCTCTCTTGCATGC 59.052 52.381 11.82 11.82 0.00 4.06
2937 3185 8.668510 AACATTGCATAACAGATCTAAGTAGG 57.331 34.615 0.00 0.00 0.00 3.18
2971 3219 5.607477 TCAAGTGAGTTATTCGAACAGGTT 58.393 37.500 0.00 0.00 0.00 3.50
3161 3411 7.831193 AGTATATGGGGCTTTCTGCATATTTAG 59.169 37.037 0.00 0.00 45.15 1.85
3540 3790 9.638176 AATCATATCAAAAGCTTCCTTATCTGT 57.362 29.630 0.00 0.00 0.00 3.41
3566 3816 6.175471 AGAAGCATCACAATCTTGTATGTCA 58.825 36.000 0.00 0.00 39.91 3.58
3689 3939 0.949397 GCGGGAACTTCGTTTTCCTT 59.051 50.000 10.77 0.00 42.10 3.36
3935 4185 4.199310 GCTTCTGCATTACCTTGACCATA 58.801 43.478 0.00 0.00 39.41 2.74
4407 4657 8.463930 TTCCACAAGAGACAAATAAGTCAATT 57.536 30.769 0.00 0.00 40.98 2.32
4464 4714 5.353394 AGATCTTTTCTGTACCGCCAATA 57.647 39.130 0.00 0.00 31.79 1.90
4679 4929 7.884257 TCATGAGAAGTATTTCAATTTGCACA 58.116 30.769 0.44 0.00 35.70 4.57
4714 4964 7.599630 AATAATCATGCACAAAATGGACAAC 57.400 32.000 0.00 0.00 0.00 3.32
4719 4969 9.590451 AGAAACTAATAATCATGCACAAAATGG 57.410 29.630 0.00 0.00 0.00 3.16
4933 5204 1.281867 TCCCCGCATCAGAAAAGACAT 59.718 47.619 0.00 0.00 0.00 3.06
5256 5527 4.443978 AGCCAATAGCCTGTTGTGATAT 57.556 40.909 0.37 0.00 45.47 1.63
5438 5709 4.941263 TCTTGGTTAAATCCCTGATGAACG 59.059 41.667 0.00 0.00 0.00 3.95
5851 6122 7.760131 AACAAGGATCATGAAATAAAATGCG 57.240 32.000 0.00 0.00 0.00 4.73
5881 6152 6.344500 CAGAACTGTCTATTAATGCCAGAGT 58.656 40.000 14.20 3.57 30.85 3.24
5884 6155 5.121811 AGCAGAACTGTCTATTAATGCCAG 58.878 41.667 0.00 4.05 30.85 4.85
6101 6424 6.109156 TGTGTAGAGTATTTCCACATGTGT 57.891 37.500 23.79 8.43 30.16 3.72
6123 6446 4.142534 ACTTTCCACGAAATCATGCAGATG 60.143 41.667 0.00 0.00 36.96 2.90
6306 6653 1.352017 TCTCTTCATTTCCAGGCTGCA 59.648 47.619 9.56 0.00 0.00 4.41
6449 6796 7.234988 ACTTAAGTTACTCCCATTGTGACTAGT 59.765 37.037 1.12 0.00 33.98 2.57
6450 6797 7.612677 ACTTAAGTTACTCCCATTGTGACTAG 58.387 38.462 1.12 0.00 33.98 2.57
6451 6798 7.549147 ACTTAAGTTACTCCCATTGTGACTA 57.451 36.000 1.12 0.00 33.98 2.59
6452 6799 6.435292 ACTTAAGTTACTCCCATTGTGACT 57.565 37.500 1.12 0.00 36.11 3.41
6453 6800 7.384477 ACTACTTAAGTTACTCCCATTGTGAC 58.616 38.462 14.49 0.00 33.35 3.67
6454 6801 7.549147 ACTACTTAAGTTACTCCCATTGTGA 57.451 36.000 14.49 0.00 33.35 3.58
6455 6802 9.148104 GTTACTACTTAAGTTACTCCCATTGTG 57.852 37.037 14.49 0.00 39.80 3.33
6456 6803 8.873144 TGTTACTACTTAAGTTACTCCCATTGT 58.127 33.333 14.49 0.00 38.33 2.71
6457 6804 9.886132 ATGTTACTACTTAAGTTACTCCCATTG 57.114 33.333 14.49 0.00 38.33 2.82
6459 6806 9.263446 TGATGTTACTACTTAAGTTACTCCCAT 57.737 33.333 14.49 9.30 38.33 4.00
6460 6807 8.526147 GTGATGTTACTACTTAAGTTACTCCCA 58.474 37.037 14.49 4.90 38.33 4.37
6461 6808 8.526147 TGTGATGTTACTACTTAAGTTACTCCC 58.474 37.037 14.49 0.00 38.33 4.30
6462 6809 9.351570 GTGTGATGTTACTACTTAAGTTACTCC 57.648 37.037 14.49 0.70 38.33 3.85
6463 6810 9.903682 TGTGTGATGTTACTACTTAAGTTACTC 57.096 33.333 14.49 2.47 38.33 2.59
6468 6815 9.772973 TGAAATGTGTGATGTTACTACTTAAGT 57.227 29.630 13.68 13.68 42.62 2.24
6473 6820 9.719355 TGTATTGAAATGTGTGATGTTACTACT 57.281 29.630 0.00 0.00 0.00 2.57
6476 6823 9.283768 TCTTGTATTGAAATGTGTGATGTTACT 57.716 29.630 0.00 0.00 0.00 2.24
6479 6826 9.414295 CAATCTTGTATTGAAATGTGTGATGTT 57.586 29.630 0.00 0.00 0.00 2.71
6480 6827 7.543172 GCAATCTTGTATTGAAATGTGTGATGT 59.457 33.333 2.01 0.00 0.00 3.06
6481 6828 7.758076 AGCAATCTTGTATTGAAATGTGTGATG 59.242 33.333 2.01 0.00 0.00 3.07
6482 6829 7.833786 AGCAATCTTGTATTGAAATGTGTGAT 58.166 30.769 2.01 0.00 0.00 3.06
6483 6830 7.218228 AGCAATCTTGTATTGAAATGTGTGA 57.782 32.000 2.01 0.00 0.00 3.58
6484 6831 7.878477 AAGCAATCTTGTATTGAAATGTGTG 57.122 32.000 2.01 0.00 0.00 3.82
6485 6832 9.577110 CATAAGCAATCTTGTATTGAAATGTGT 57.423 29.630 2.01 0.00 33.85 3.72
6486 6833 9.577110 ACATAAGCAATCTTGTATTGAAATGTG 57.423 29.630 2.01 0.00 31.88 3.21
6487 6834 9.577110 CACATAAGCAATCTTGTATTGAAATGT 57.423 29.630 2.01 5.07 32.55 2.71
6488 6835 9.027129 CCACATAAGCAATCTTGTATTGAAATG 57.973 33.333 2.01 4.57 33.85 2.32
6489 6836 7.707893 GCCACATAAGCAATCTTGTATTGAAAT 59.292 33.333 2.01 0.00 33.85 2.17
6490 6837 7.035004 GCCACATAAGCAATCTTGTATTGAAA 58.965 34.615 2.01 0.00 33.85 2.69
6491 6838 6.152492 TGCCACATAAGCAATCTTGTATTGAA 59.848 34.615 2.01 0.00 37.28 2.69
6492 6839 5.651576 TGCCACATAAGCAATCTTGTATTGA 59.348 36.000 2.01 0.00 37.28 2.57
6493 6840 5.893687 TGCCACATAAGCAATCTTGTATTG 58.106 37.500 0.00 0.00 37.28 1.90
6494 6841 5.450965 GCTGCCACATAAGCAATCTTGTATT 60.451 40.000 0.00 0.00 40.35 1.89
6495 6842 4.037208 GCTGCCACATAAGCAATCTTGTAT 59.963 41.667 0.00 0.00 40.35 2.29
6496 6843 3.378112 GCTGCCACATAAGCAATCTTGTA 59.622 43.478 0.00 0.00 40.35 2.41
6497 6844 2.165030 GCTGCCACATAAGCAATCTTGT 59.835 45.455 0.00 0.00 40.35 3.16
6498 6845 2.426024 AGCTGCCACATAAGCAATCTTG 59.574 45.455 0.00 0.00 42.06 3.02
6499 6846 2.731572 AGCTGCCACATAAGCAATCTT 58.268 42.857 0.00 0.00 42.06 2.40
6500 6847 2.431954 AGCTGCCACATAAGCAATCT 57.568 45.000 0.00 0.00 42.06 2.40
6501 6848 4.843220 ATTAGCTGCCACATAAGCAATC 57.157 40.909 0.00 0.00 42.06 2.67
6502 6849 6.713762 TTAATTAGCTGCCACATAAGCAAT 57.286 33.333 0.00 0.00 42.06 3.56
6503 6850 6.320926 TCATTAATTAGCTGCCACATAAGCAA 59.679 34.615 0.00 0.00 42.06 3.91
6504 6851 5.827267 TCATTAATTAGCTGCCACATAAGCA 59.173 36.000 0.00 0.00 42.06 3.91
6505 6852 6.317789 TCATTAATTAGCTGCCACATAAGC 57.682 37.500 0.00 0.00 39.82 3.09
6506 6853 6.712095 TCCTCATTAATTAGCTGCCACATAAG 59.288 38.462 0.00 0.00 0.00 1.73
6507 6854 6.600388 TCCTCATTAATTAGCTGCCACATAA 58.400 36.000 0.00 0.00 0.00 1.90
6508 6855 6.043127 TCTCCTCATTAATTAGCTGCCACATA 59.957 38.462 0.00 0.00 0.00 2.29
6509 6856 5.052693 TCCTCATTAATTAGCTGCCACAT 57.947 39.130 0.00 0.00 0.00 3.21
6510 6857 4.164030 TCTCCTCATTAATTAGCTGCCACA 59.836 41.667 0.00 0.00 0.00 4.17
6511 6858 4.708177 TCTCCTCATTAATTAGCTGCCAC 58.292 43.478 0.00 0.00 0.00 5.01
6512 6859 4.655649 TCTCTCCTCATTAATTAGCTGCCA 59.344 41.667 0.00 0.00 0.00 4.92
6513 6860 5.220710 TCTCTCCTCATTAATTAGCTGCC 57.779 43.478 0.00 0.00 0.00 4.85
6514 6861 5.237048 CCTCTCTCCTCATTAATTAGCTGC 58.763 45.833 0.00 0.00 0.00 5.25
6515 6862 5.279910 CCCCTCTCTCCTCATTAATTAGCTG 60.280 48.000 0.00 0.00 0.00 4.24
6516 6863 4.843516 CCCCTCTCTCCTCATTAATTAGCT 59.156 45.833 0.00 0.00 0.00 3.32
6517 6864 4.595350 ACCCCTCTCTCCTCATTAATTAGC 59.405 45.833 0.00 0.00 0.00 3.09
6518 6865 6.755542 AACCCCTCTCTCCTCATTAATTAG 57.244 41.667 0.00 0.00 0.00 1.73
6519 6866 6.447084 ACAAACCCCTCTCTCCTCATTAATTA 59.553 38.462 0.00 0.00 0.00 1.40
6520 6867 5.254032 ACAAACCCCTCTCTCCTCATTAATT 59.746 40.000 0.00 0.00 0.00 1.40
6521 6868 4.790790 ACAAACCCCTCTCTCCTCATTAAT 59.209 41.667 0.00 0.00 0.00 1.40
6522 6869 4.019321 CACAAACCCCTCTCTCCTCATTAA 60.019 45.833 0.00 0.00 0.00 1.40
6523 6870 3.519510 CACAAACCCCTCTCTCCTCATTA 59.480 47.826 0.00 0.00 0.00 1.90
6524 6871 2.307098 CACAAACCCCTCTCTCCTCATT 59.693 50.000 0.00 0.00 0.00 2.57
6525 6872 1.912043 CACAAACCCCTCTCTCCTCAT 59.088 52.381 0.00 0.00 0.00 2.90
6526 6873 1.352083 CACAAACCCCTCTCTCCTCA 58.648 55.000 0.00 0.00 0.00 3.86
6527 6874 0.615850 CCACAAACCCCTCTCTCCTC 59.384 60.000 0.00 0.00 0.00 3.71
6528 6875 0.104409 ACCACAAACCCCTCTCTCCT 60.104 55.000 0.00 0.00 0.00 3.69
6529 6876 1.652947 TACCACAAACCCCTCTCTCC 58.347 55.000 0.00 0.00 0.00 3.71
6530 6877 2.638363 AGTTACCACAAACCCCTCTCTC 59.362 50.000 0.00 0.00 0.00 3.20
6531 6878 2.702748 AGTTACCACAAACCCCTCTCT 58.297 47.619 0.00 0.00 0.00 3.10
6532 6879 3.503800 AAGTTACCACAAACCCCTCTC 57.496 47.619 0.00 0.00 0.00 3.20
6533 6880 3.244805 GCTAAGTTACCACAAACCCCTCT 60.245 47.826 0.00 0.00 0.00 3.69
6534 6881 3.079578 GCTAAGTTACCACAAACCCCTC 58.920 50.000 0.00 0.00 0.00 4.30
6535 6882 2.714793 AGCTAAGTTACCACAAACCCCT 59.285 45.455 0.00 0.00 0.00 4.79
6536 6883 3.150458 AGCTAAGTTACCACAAACCCC 57.850 47.619 0.00 0.00 0.00 4.95
6537 6884 4.903054 ACTAGCTAAGTTACCACAAACCC 58.097 43.478 0.00 0.00 33.35 4.11
6549 6896 8.027771 GTGTGATGTTACAGTAACTAGCTAAGT 58.972 37.037 21.56 0.00 41.49 2.24
6550 6897 8.027189 TGTGTGATGTTACAGTAACTAGCTAAG 58.973 37.037 21.56 0.00 39.38 2.18
6551 6898 7.888424 TGTGTGATGTTACAGTAACTAGCTAA 58.112 34.615 21.56 3.59 39.38 3.09
6552 6899 7.457024 TGTGTGATGTTACAGTAACTAGCTA 57.543 36.000 21.56 4.25 39.38 3.32
6553 6900 6.340962 TGTGTGATGTTACAGTAACTAGCT 57.659 37.500 21.56 6.57 39.38 3.32
6554 6901 7.596749 AATGTGTGATGTTACAGTAACTAGC 57.403 36.000 21.56 12.59 39.38 3.42
6555 6902 9.203421 TGAAATGTGTGATGTTACAGTAACTAG 57.797 33.333 21.56 0.00 39.38 2.57
6556 6903 9.549078 TTGAAATGTGTGATGTTACAGTAACTA 57.451 29.630 21.56 10.50 39.38 2.24
6557 6904 8.445275 TTGAAATGTGTGATGTTACAGTAACT 57.555 30.769 21.56 9.41 39.38 2.24
6558 6905 7.803189 CCTTGAAATGTGTGATGTTACAGTAAC 59.197 37.037 15.58 15.58 39.11 2.50
6559 6906 7.521423 GCCTTGAAATGTGTGATGTTACAGTAA 60.521 37.037 0.00 0.00 0.00 2.24
6560 6907 6.072728 GCCTTGAAATGTGTGATGTTACAGTA 60.073 38.462 0.00 0.00 0.00 2.74
6561 6908 5.278463 GCCTTGAAATGTGTGATGTTACAGT 60.278 40.000 0.00 0.00 0.00 3.55
6562 6909 5.156355 GCCTTGAAATGTGTGATGTTACAG 58.844 41.667 0.00 0.00 0.00 2.74
6563 6910 4.582240 TGCCTTGAAATGTGTGATGTTACA 59.418 37.500 0.00 0.00 0.00 2.41
6564 6911 5.119931 TGCCTTGAAATGTGTGATGTTAC 57.880 39.130 0.00 0.00 0.00 2.50
6565 6912 5.981088 ATGCCTTGAAATGTGTGATGTTA 57.019 34.783 0.00 0.00 0.00 2.41
6566 6913 4.877378 ATGCCTTGAAATGTGTGATGTT 57.123 36.364 0.00 0.00 0.00 2.71
6567 6914 5.981088 TTATGCCTTGAAATGTGTGATGT 57.019 34.783 0.00 0.00 0.00 3.06
6568 6915 6.566141 TCATTATGCCTTGAAATGTGTGATG 58.434 36.000 0.00 0.00 33.35 3.07
6569 6916 6.379133 ACTCATTATGCCTTGAAATGTGTGAT 59.621 34.615 0.00 0.00 36.51 3.06
6570 6917 5.711506 ACTCATTATGCCTTGAAATGTGTGA 59.288 36.000 0.00 0.00 36.51 3.58
6571 6918 5.957798 ACTCATTATGCCTTGAAATGTGTG 58.042 37.500 0.00 0.00 36.51 3.82
6572 6919 5.948162 AGACTCATTATGCCTTGAAATGTGT 59.052 36.000 0.00 0.00 39.01 3.72
6573 6920 6.446781 AGACTCATTATGCCTTGAAATGTG 57.553 37.500 0.00 0.00 33.35 3.21
6574 6921 9.499479 CTATAGACTCATTATGCCTTGAAATGT 57.501 33.333 0.00 0.00 33.35 2.71
6575 6922 8.449397 GCTATAGACTCATTATGCCTTGAAATG 58.551 37.037 3.21 0.00 32.96 2.32
6576 6923 7.609532 GGCTATAGACTCATTATGCCTTGAAAT 59.390 37.037 3.21 0.00 36.52 2.17
6577 6924 6.936900 GGCTATAGACTCATTATGCCTTGAAA 59.063 38.462 3.21 0.00 36.52 2.69
6578 6925 6.270927 AGGCTATAGACTCATTATGCCTTGAA 59.729 38.462 0.83 0.00 46.04 2.69
6579 6926 5.782331 AGGCTATAGACTCATTATGCCTTGA 59.218 40.000 0.83 0.00 46.04 3.02
6580 6927 6.047511 AGGCTATAGACTCATTATGCCTTG 57.952 41.667 0.83 0.00 46.04 3.61
6581 6928 7.798710 TTAGGCTATAGACTCATTATGCCTT 57.201 36.000 12.64 0.00 46.04 4.35
6622 6969 9.293404 GTGGGTAGTAACATATGAGTAGTATCA 57.707 37.037 10.38 8.20 0.00 2.15
6623 6970 9.517868 AGTGGGTAGTAACATATGAGTAGTATC 57.482 37.037 10.38 8.37 0.00 2.24
6626 6973 9.298250 CATAGTGGGTAGTAACATATGAGTAGT 57.702 37.037 10.38 6.72 0.00 2.73
6627 6974 8.740906 CCATAGTGGGTAGTAACATATGAGTAG 58.259 40.741 10.38 0.00 32.67 2.57
6628 6975 8.450434 TCCATAGTGGGTAGTAACATATGAGTA 58.550 37.037 10.38 0.00 38.32 2.59
6629 6976 7.302948 TCCATAGTGGGTAGTAACATATGAGT 58.697 38.462 10.38 0.00 38.32 3.41
6630 6977 7.093727 CCTCCATAGTGGGTAGTAACATATGAG 60.094 44.444 10.38 0.00 38.32 2.90
6631 6978 6.724441 CCTCCATAGTGGGTAGTAACATATGA 59.276 42.308 10.38 0.00 38.32 2.15
6632 6979 6.497259 ACCTCCATAGTGGGTAGTAACATATG 59.503 42.308 0.00 0.00 38.32 1.78
6633 6980 6.631107 ACCTCCATAGTGGGTAGTAACATAT 58.369 40.000 0.00 0.00 38.32 1.78
6634 6981 6.034442 ACCTCCATAGTGGGTAGTAACATA 57.966 41.667 0.00 0.00 38.32 2.29
6635 6982 4.892198 ACCTCCATAGTGGGTAGTAACAT 58.108 43.478 0.00 0.00 38.32 2.71
6636 6983 4.341863 ACCTCCATAGTGGGTAGTAACA 57.658 45.455 0.00 0.00 38.32 2.41
6642 6989 5.470755 TGTTACTACCTCCATAGTGGGTA 57.529 43.478 0.00 0.00 38.32 3.69
6643 6990 4.341863 TGTTACTACCTCCATAGTGGGT 57.658 45.455 0.00 0.00 38.32 4.51
6644 6991 6.208994 GTCTATGTTACTACCTCCATAGTGGG 59.791 46.154 0.00 0.00 38.32 4.61
6645 6992 7.005296 AGTCTATGTTACTACCTCCATAGTGG 58.995 42.308 0.00 0.00 38.47 4.00
6646 6993 9.221933 CTAGTCTATGTTACTACCTCCATAGTG 57.778 40.741 0.00 0.00 38.47 2.74
6647 6994 8.947305 ACTAGTCTATGTTACTACCTCCATAGT 58.053 37.037 0.00 0.00 38.47 2.12
6650 6997 9.571816 GTTACTAGTCTATGTTACTACCTCCAT 57.428 37.037 0.00 0.00 0.00 3.41
6651 6998 8.551440 TGTTACTAGTCTATGTTACTACCTCCA 58.449 37.037 0.00 0.00 0.00 3.86
6652 6999 8.970859 TGTTACTAGTCTATGTTACTACCTCC 57.029 38.462 0.00 0.00 0.00 4.30
6679 7026 9.953697 GGAGTAACATAGAGTAGTAACTTGATG 57.046 37.037 0.00 0.00 35.56 3.07
6680 7027 9.134055 GGGAGTAACATAGAGTAGTAACTTGAT 57.866 37.037 0.00 0.00 35.56 2.57
6681 7028 7.559170 GGGGAGTAACATAGAGTAGTAACTTGA 59.441 40.741 0.00 0.00 35.56 3.02
6682 7029 7.341256 TGGGGAGTAACATAGAGTAGTAACTTG 59.659 40.741 0.00 0.00 35.56 3.16
6683 7030 7.341512 GTGGGGAGTAACATAGAGTAGTAACTT 59.658 40.741 0.00 0.00 35.56 2.66
6684 7031 6.832900 GTGGGGAGTAACATAGAGTAGTAACT 59.167 42.308 0.00 0.00 39.21 2.24
6685 7032 6.832900 AGTGGGGAGTAACATAGAGTAGTAAC 59.167 42.308 0.00 0.00 0.00 2.50
6686 7033 6.832384 CAGTGGGGAGTAACATAGAGTAGTAA 59.168 42.308 0.00 0.00 0.00 2.24
6687 7034 6.069206 ACAGTGGGGAGTAACATAGAGTAGTA 60.069 42.308 0.00 0.00 0.00 1.82
6688 7035 5.202004 CAGTGGGGAGTAACATAGAGTAGT 58.798 45.833 0.00 0.00 0.00 2.73
6689 7036 5.067936 CACAGTGGGGAGTAACATAGAGTAG 59.932 48.000 0.00 0.00 0.00 2.57
6690 7037 4.954202 CACAGTGGGGAGTAACATAGAGTA 59.046 45.833 0.00 0.00 0.00 2.59
6691 7038 3.769844 CACAGTGGGGAGTAACATAGAGT 59.230 47.826 0.00 0.00 0.00 3.24
6692 7039 4.023980 TCACAGTGGGGAGTAACATAGAG 58.976 47.826 0.00 0.00 0.00 2.43
6693 7040 4.023980 CTCACAGTGGGGAGTAACATAGA 58.976 47.826 0.00 0.00 0.00 1.98
6694 7041 3.430929 GCTCACAGTGGGGAGTAACATAG 60.431 52.174 1.60 0.00 33.66 2.23
6695 7042 2.500098 GCTCACAGTGGGGAGTAACATA 59.500 50.000 1.60 0.00 33.66 2.29
6696 7043 1.279271 GCTCACAGTGGGGAGTAACAT 59.721 52.381 1.60 0.00 33.66 2.71
6697 7044 0.685097 GCTCACAGTGGGGAGTAACA 59.315 55.000 1.60 0.00 33.66 2.41
6698 7045 0.685097 TGCTCACAGTGGGGAGTAAC 59.315 55.000 1.60 1.34 33.66 2.50
6699 7046 0.976641 CTGCTCACAGTGGGGAGTAA 59.023 55.000 13.80 4.52 39.22 2.24
6700 7047 2.671145 CTGCTCACAGTGGGGAGTA 58.329 57.895 13.80 9.42 39.22 2.59
6701 7048 3.476386 CTGCTCACAGTGGGGAGT 58.524 61.111 13.80 0.00 39.22 3.85
6710 7057 7.520451 TTAAACTAGACTAAGACTGCTCACA 57.480 36.000 0.00 0.00 0.00 3.58
6711 7058 8.813643 TTTTAAACTAGACTAAGACTGCTCAC 57.186 34.615 0.00 0.00 0.00 3.51
6712 7059 9.998106 ATTTTTAAACTAGACTAAGACTGCTCA 57.002 29.630 0.00 0.00 0.00 4.26
6723 7070 9.668497 CCTGGTTAGCTATTTTTAAACTAGACT 57.332 33.333 7.89 5.64 32.30 3.24
6724 7071 8.396390 GCCTGGTTAGCTATTTTTAAACTAGAC 58.604 37.037 7.89 0.00 32.30 2.59
6793 7140 0.606401 AGGCATCACGGACAACAAGG 60.606 55.000 0.00 0.00 0.00 3.61
6829 7176 8.742777 AGTCACATTGTATTTTCTGCATATGTT 58.257 29.630 4.29 0.00 0.00 2.71
6861 7208 2.415893 CGAAAATGGGAAGGCATGTGTC 60.416 50.000 0.00 0.00 0.00 3.67
6862 7209 1.545582 CGAAAATGGGAAGGCATGTGT 59.454 47.619 0.00 0.00 0.00 3.72
6863 7210 1.818060 TCGAAAATGGGAAGGCATGTG 59.182 47.619 0.00 0.00 0.00 3.21
6864 7211 2.214376 TCGAAAATGGGAAGGCATGT 57.786 45.000 0.00 0.00 0.00 3.21
6865 7212 2.493278 ACTTCGAAAATGGGAAGGCATG 59.507 45.455 0.00 0.00 43.03 4.06
6866 7213 2.807676 ACTTCGAAAATGGGAAGGCAT 58.192 42.857 0.00 0.00 43.03 4.40
6867 7214 2.286365 ACTTCGAAAATGGGAAGGCA 57.714 45.000 0.00 0.00 43.03 4.75
6868 7215 3.005367 TGAAACTTCGAAAATGGGAAGGC 59.995 43.478 0.00 0.00 43.03 4.35
6869 7216 4.846779 TGAAACTTCGAAAATGGGAAGG 57.153 40.909 0.00 0.00 43.03 3.46
6870 7217 5.587289 TGTTGAAACTTCGAAAATGGGAAG 58.413 37.500 0.00 0.00 44.04 3.46
6871 7218 5.584253 TGTTGAAACTTCGAAAATGGGAA 57.416 34.783 0.00 0.00 0.00 3.97
6872 7219 5.300539 TCATGTTGAAACTTCGAAAATGGGA 59.699 36.000 0.00 0.00 0.00 4.37
6873 7220 5.527951 TCATGTTGAAACTTCGAAAATGGG 58.472 37.500 0.00 0.00 0.00 4.00
6874 7221 6.642131 ACATCATGTTGAAACTTCGAAAATGG 59.358 34.615 10.74 0.00 0.00 3.16
6875 7222 7.627585 ACATCATGTTGAAACTTCGAAAATG 57.372 32.000 10.74 0.00 0.00 2.32
7085 7527 3.554524 AGCAAAATCAAACATGTCGTCG 58.445 40.909 0.00 0.00 0.00 5.12
7088 7530 5.285370 CAGATGAGCAAAATCAAACATGTCG 59.715 40.000 0.00 0.00 31.76 4.35
7126 7568 9.213780 ATGCACTACATTATGGAACAGAGGACA 62.214 40.741 0.00 0.00 37.52 4.02
7128 7570 5.130975 ATGCACTACATTATGGAACAGAGGA 59.869 40.000 0.00 0.00 37.52 3.71
7519 7981 7.323052 TGGTTCATATGCAGGTATTACCATA 57.677 36.000 15.19 4.97 41.95 2.74
7520 7982 6.199557 TGGTTCATATGCAGGTATTACCAT 57.800 37.500 15.19 2.89 41.95 3.55
7521 7983 5.638530 TGGTTCATATGCAGGTATTACCA 57.361 39.130 15.19 0.00 41.95 3.25
7522 7984 8.046708 TGATATGGTTCATATGCAGGTATTACC 58.953 37.037 4.57 4.57 37.20 2.85
7523 7985 9.448438 TTGATATGGTTCATATGCAGGTATTAC 57.552 33.333 5.28 0.00 37.20 1.89
7546 8008 7.561251 TCAGGACCATCGAAAGTAAATATTGA 58.439 34.615 0.00 0.00 0.00 2.57
7592 8054 2.443255 AGTGAGGCCATGTAAATAGGGG 59.557 50.000 5.01 0.00 0.00 4.79
7627 8089 5.086058 CGGTTTTATTGATGGTCAAAGTCG 58.914 41.667 0.00 0.00 40.12 4.18
7870 8332 0.970640 TGGCGAACCTACAGCAAGTA 59.029 50.000 0.00 0.00 36.63 2.24
7959 8421 4.202567 TGGCAAGTAAATGGGAAGTTCTCT 60.203 41.667 3.98 0.00 0.00 3.10
8573 9035 2.038813 TCACGCTCCATCTCCCCA 59.961 61.111 0.00 0.00 0.00 4.96
9089 9589 7.398829 TGTAACAAGGCTAGAATGGTAAATGA 58.601 34.615 0.00 0.00 0.00 2.57
9127 9629 3.252215 GGCTACAATGGTAAATGCGCATA 59.748 43.478 25.61 7.96 0.00 3.14
9128 9630 2.034558 GGCTACAATGGTAAATGCGCAT 59.965 45.455 19.28 19.28 0.00 4.73
9129 9631 1.403679 GGCTACAATGGTAAATGCGCA 59.596 47.619 14.96 14.96 0.00 6.09
9130 9632 1.676006 AGGCTACAATGGTAAATGCGC 59.324 47.619 0.00 0.00 0.00 6.09
9131 9633 3.128589 ACAAGGCTACAATGGTAAATGCG 59.871 43.478 0.00 0.00 0.00 4.73
9132 9634 4.718940 ACAAGGCTACAATGGTAAATGC 57.281 40.909 0.00 0.00 0.00 3.56
9133 9635 7.151999 TGTAACAAGGCTACAATGGTAAATG 57.848 36.000 0.00 0.00 0.00 2.32
9134 9636 7.834181 AGATGTAACAAGGCTACAATGGTAAAT 59.166 33.333 0.00 0.00 33.17 1.40
9135 9637 7.172342 AGATGTAACAAGGCTACAATGGTAAA 58.828 34.615 0.00 0.00 33.17 2.01
9136 9638 6.717289 AGATGTAACAAGGCTACAATGGTAA 58.283 36.000 0.00 0.00 33.17 2.85
9137 9639 6.308015 AGATGTAACAAGGCTACAATGGTA 57.692 37.500 0.00 0.00 33.17 3.25
9138 9640 5.179452 AGATGTAACAAGGCTACAATGGT 57.821 39.130 0.00 0.00 33.17 3.55
9139 9641 4.271049 CGAGATGTAACAAGGCTACAATGG 59.729 45.833 0.00 0.00 33.17 3.16
9140 9642 5.109210 TCGAGATGTAACAAGGCTACAATG 58.891 41.667 0.00 0.00 33.17 2.82
9141 9643 5.339008 TCGAGATGTAACAAGGCTACAAT 57.661 39.130 0.00 0.00 33.17 2.71
9142 9644 4.381612 CCTCGAGATGTAACAAGGCTACAA 60.382 45.833 15.71 0.00 33.17 2.41
9143 9645 3.130516 CCTCGAGATGTAACAAGGCTACA 59.869 47.826 15.71 0.00 33.93 2.74
9144 9646 3.130693 ACCTCGAGATGTAACAAGGCTAC 59.869 47.826 15.71 0.00 0.00 3.58
9145 9647 3.362706 ACCTCGAGATGTAACAAGGCTA 58.637 45.455 15.71 0.00 0.00 3.93
9146 9648 2.180276 ACCTCGAGATGTAACAAGGCT 58.820 47.619 15.71 0.00 0.00 4.58
9147 9649 2.673368 CAACCTCGAGATGTAACAAGGC 59.327 50.000 15.71 0.00 0.00 4.35
9148 9650 2.673368 GCAACCTCGAGATGTAACAAGG 59.327 50.000 15.71 0.00 0.00 3.61
9149 9651 3.325870 TGCAACCTCGAGATGTAACAAG 58.674 45.455 15.71 0.00 0.00 3.16
9150 9652 3.394674 TGCAACCTCGAGATGTAACAA 57.605 42.857 15.71 0.00 0.00 2.83
9151 9653 3.394674 TTGCAACCTCGAGATGTAACA 57.605 42.857 15.71 3.49 0.00 2.41
9152 9654 4.033358 CAGATTGCAACCTCGAGATGTAAC 59.967 45.833 15.71 11.94 0.00 2.50
9153 9655 4.183865 CAGATTGCAACCTCGAGATGTAA 58.816 43.478 15.71 17.50 0.00 2.41
9154 9656 3.195610 ACAGATTGCAACCTCGAGATGTA 59.804 43.478 15.71 9.39 0.00 2.29
9155 9657 2.027745 ACAGATTGCAACCTCGAGATGT 60.028 45.455 15.71 0.34 0.00 3.06
9156 9658 2.350804 CACAGATTGCAACCTCGAGATG 59.649 50.000 15.71 13.61 0.00 2.90
9157 9659 2.027745 ACACAGATTGCAACCTCGAGAT 60.028 45.455 15.71 0.00 0.00 2.75
9158 9660 1.344438 ACACAGATTGCAACCTCGAGA 59.656 47.619 15.71 0.00 0.00 4.04
9159 9661 1.462283 CACACAGATTGCAACCTCGAG 59.538 52.381 5.13 5.13 0.00 4.04
9160 9662 1.069978 TCACACAGATTGCAACCTCGA 59.930 47.619 0.00 0.00 0.00 4.04
9161 9663 1.511850 TCACACAGATTGCAACCTCG 58.488 50.000 0.00 0.00 0.00 4.63
9162 9664 5.824904 ATTATCACACAGATTGCAACCTC 57.175 39.130 0.00 0.00 38.19 3.85
9163 9665 7.254898 CGATTATTATCACACAGATTGCAACCT 60.255 37.037 0.00 0.00 38.19 3.50
9164 9666 6.852853 CGATTATTATCACACAGATTGCAACC 59.147 38.462 0.00 0.00 38.19 3.77
9165 9667 7.409697 ACGATTATTATCACACAGATTGCAAC 58.590 34.615 0.00 0.00 38.19 4.17
9166 9668 7.279758 TGACGATTATTATCACACAGATTGCAA 59.720 33.333 0.00 0.00 38.19 4.08
9167 9669 6.760770 TGACGATTATTATCACACAGATTGCA 59.239 34.615 0.00 0.00 38.19 4.08
9168 9670 7.065894 GTGACGATTATTATCACACAGATTGC 58.934 38.462 11.49 0.00 41.94 3.56
9169 9671 7.439356 AGGTGACGATTATTATCACACAGATTG 59.561 37.037 15.62 0.00 43.73 2.67
9287 9789 5.948162 ACAGAAGTGTCAATTATCCTGCAAT 59.052 36.000 0.00 0.00 26.76 3.56
9313 9815 5.988561 AGCGAGGAATTTTTGTATTTGCAAA 59.011 32.000 15.44 15.44 36.67 3.68
9325 9827 3.063997 CGAGCACATTAGCGAGGAATTTT 59.936 43.478 0.00 0.00 40.15 1.82
9334 9836 2.703409 GCACCGAGCACATTAGCG 59.297 61.111 0.00 0.00 44.79 4.26
9416 9918 3.390135 TGTTACTCCAAGAGAAACTGCG 58.610 45.455 0.00 0.00 33.32 5.18
9425 9927 5.623956 TGGTCTCTTTTGTTACTCCAAGA 57.376 39.130 0.00 0.00 0.00 3.02
9448 9950 6.942976 ACTATTATTTCGTTCCAAGGACAGA 58.057 36.000 0.00 0.00 0.00 3.41
9604 10191 5.097742 TCCGTGGACATGTATCATTTTCT 57.902 39.130 0.00 0.00 0.00 2.52
9757 10345 8.710835 AACACTTTCCACAAATTCGTTAATTT 57.289 26.923 0.00 0.00 44.35 1.82
9758 10346 9.458374 CTAACACTTTCCACAAATTCGTTAATT 57.542 29.630 0.00 0.00 36.87 1.40
9759 10347 7.593644 GCTAACACTTTCCACAAATTCGTTAAT 59.406 33.333 0.00 0.00 0.00 1.40
9774 10362 8.964150 ACATTTTGTAAATTCGCTAACACTTTC 58.036 29.630 0.00 0.00 0.00 2.62
9784 10372 7.328249 TGGAATCTTGACATTTTGTAAATTCGC 59.672 33.333 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.