Multiple sequence alignment - TraesCS7A01G320700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G320700 chr7A 100.000 3190 0 0 1 3190 462962040 462965229 0.000000e+00 5891
1 TraesCS7A01G320700 chr7A 98.027 2939 21 11 283 3190 204164365 204167297 0.000000e+00 5072
2 TraesCS7A01G320700 chr7A 96.383 2931 34 21 283 3190 5632884 5635765 0.000000e+00 4759
3 TraesCS7A01G320700 chr7A 98.608 2371 13 1 840 3190 424544001 424541631 0.000000e+00 4178
4 TraesCS7A01G320700 chr5B 97.671 2963 14 4 283 3190 513600268 513603230 0.000000e+00 5038
5 TraesCS7A01G320700 chr7B 97.604 2963 16 6 277 3187 245983997 245986956 0.000000e+00 5027
6 TraesCS7A01G320700 chr7B 97.657 2945 26 11 283 3190 263144460 263141522 0.000000e+00 5016
7 TraesCS7A01G320700 chr7B 97.341 2971 16 5 282 3190 446152840 446155809 0.000000e+00 4990
8 TraesCS7A01G320700 chr7B 97.162 2960 29 18 282 3190 156960753 156963708 0.000000e+00 4950
9 TraesCS7A01G320700 chr7B 96.937 2971 35 23 276 3190 582235314 582238284 0.000000e+00 4931
10 TraesCS7A01G320700 chr7B 96.973 2973 12 6 279 3190 169298166 169301121 0.000000e+00 4920
11 TraesCS7A01G320700 chr7B 97.733 2779 15 4 459 3190 446171846 446174623 0.000000e+00 4739
12 TraesCS7A01G320700 chr7B 99.291 282 2 0 1 282 413564536 413564817 7.890000e-141 510
13 TraesCS7A01G320700 chr4B 97.652 2939 26 16 283 3190 660455224 660452298 0.000000e+00 5005
14 TraesCS7A01G320700 chr4B 96.795 2964 33 6 282 3190 15939350 15936394 0.000000e+00 4891
15 TraesCS7A01G320700 chr2A 97.327 2956 26 12 282 3190 61657793 61660742 0.000000e+00 4972
16 TraesCS7A01G320700 chr2A 97.264 2960 29 4 283 3190 568410549 568407590 0.000000e+00 4970
17 TraesCS7A01G320700 chr6B 97.828 2762 23 9 460 3190 417231859 417234614 0.000000e+00 4734
18 TraesCS7A01G320700 chr1A 97.663 2610 25 13 606 3190 252511242 252508644 0.000000e+00 4449
19 TraesCS7A01G320700 chr1B 97.721 2501 19 12 283 2755 242246335 242243845 0.000000e+00 4268
20 TraesCS7A01G320700 chr7D 98.936 282 2 1 1 282 404050443 404050723 1.320000e-138 503


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G320700 chr7A 462962040 462965229 3189 False 5891 5891 100.000 1 3190 1 chr7A.!!$F3 3189
1 TraesCS7A01G320700 chr7A 204164365 204167297 2932 False 5072 5072 98.027 283 3190 1 chr7A.!!$F2 2907
2 TraesCS7A01G320700 chr7A 5632884 5635765 2881 False 4759 4759 96.383 283 3190 1 chr7A.!!$F1 2907
3 TraesCS7A01G320700 chr7A 424541631 424544001 2370 True 4178 4178 98.608 840 3190 1 chr7A.!!$R1 2350
4 TraesCS7A01G320700 chr5B 513600268 513603230 2962 False 5038 5038 97.671 283 3190 1 chr5B.!!$F1 2907
5 TraesCS7A01G320700 chr7B 245983997 245986956 2959 False 5027 5027 97.604 277 3187 1 chr7B.!!$F3 2910
6 TraesCS7A01G320700 chr7B 263141522 263144460 2938 True 5016 5016 97.657 283 3190 1 chr7B.!!$R1 2907
7 TraesCS7A01G320700 chr7B 446152840 446155809 2969 False 4990 4990 97.341 282 3190 1 chr7B.!!$F5 2908
8 TraesCS7A01G320700 chr7B 156960753 156963708 2955 False 4950 4950 97.162 282 3190 1 chr7B.!!$F1 2908
9 TraesCS7A01G320700 chr7B 582235314 582238284 2970 False 4931 4931 96.937 276 3190 1 chr7B.!!$F7 2914
10 TraesCS7A01G320700 chr7B 169298166 169301121 2955 False 4920 4920 96.973 279 3190 1 chr7B.!!$F2 2911
11 TraesCS7A01G320700 chr7B 446171846 446174623 2777 False 4739 4739 97.733 459 3190 1 chr7B.!!$F6 2731
12 TraesCS7A01G320700 chr4B 660452298 660455224 2926 True 5005 5005 97.652 283 3190 1 chr4B.!!$R2 2907
13 TraesCS7A01G320700 chr4B 15936394 15939350 2956 True 4891 4891 96.795 282 3190 1 chr4B.!!$R1 2908
14 TraesCS7A01G320700 chr2A 61657793 61660742 2949 False 4972 4972 97.327 282 3190 1 chr2A.!!$F1 2908
15 TraesCS7A01G320700 chr2A 568407590 568410549 2959 True 4970 4970 97.264 283 3190 1 chr2A.!!$R1 2907
16 TraesCS7A01G320700 chr6B 417231859 417234614 2755 False 4734 4734 97.828 460 3190 1 chr6B.!!$F1 2730
17 TraesCS7A01G320700 chr1A 252508644 252511242 2598 True 4449 4449 97.663 606 3190 1 chr1A.!!$R1 2584
18 TraesCS7A01G320700 chr1B 242243845 242246335 2490 True 4268 4268 97.721 283 2755 1 chr1B.!!$R1 2472


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.108424 GCGAATCTGCCTCAGTGTCT 60.108 55.0 0.0 0.0 32.61 3.41 F
40 41 0.109153 TGCCTCAGTGTCTGCATTGT 59.891 50.0 0.0 0.0 34.46 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2093 2.243221 CCCAGAATCAAGAATCCAGGGT 59.757 50.000 5.52 0.0 30.62 4.34 R
2450 2677 7.439381 AGGTCGTTGAGAAACAGAATTACTAA 58.561 34.615 0.00 0.0 0.00 2.24 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.545504 TCTTCTTATTTATGCGAATCTGCC 57.454 37.500 0.00 0.00 0.00 4.85
25 26 6.291377 TCTTCTTATTTATGCGAATCTGCCT 58.709 36.000 0.00 0.00 0.00 4.75
26 27 6.425114 TCTTCTTATTTATGCGAATCTGCCTC 59.575 38.462 0.00 0.00 0.00 4.70
27 28 5.610398 TCTTATTTATGCGAATCTGCCTCA 58.390 37.500 0.00 0.00 0.00 3.86
28 29 5.698089 TCTTATTTATGCGAATCTGCCTCAG 59.302 40.000 0.00 0.00 0.00 3.35
29 30 2.988010 TTATGCGAATCTGCCTCAGT 57.012 45.000 0.00 0.00 32.61 3.41
30 31 2.229675 TATGCGAATCTGCCTCAGTG 57.770 50.000 0.00 0.00 32.61 3.66
31 32 0.251354 ATGCGAATCTGCCTCAGTGT 59.749 50.000 0.00 0.00 32.61 3.55
32 33 0.390340 TGCGAATCTGCCTCAGTGTC 60.390 55.000 0.00 0.00 32.61 3.67
33 34 0.108424 GCGAATCTGCCTCAGTGTCT 60.108 55.000 0.00 0.00 32.61 3.41
34 35 1.638133 CGAATCTGCCTCAGTGTCTG 58.362 55.000 0.00 0.00 32.61 3.51
35 36 1.367659 GAATCTGCCTCAGTGTCTGC 58.632 55.000 0.00 0.00 32.61 4.26
36 37 0.689055 AATCTGCCTCAGTGTCTGCA 59.311 50.000 0.00 0.00 32.61 4.41
37 38 0.910338 ATCTGCCTCAGTGTCTGCAT 59.090 50.000 0.00 0.00 32.53 3.96
38 39 0.689055 TCTGCCTCAGTGTCTGCATT 59.311 50.000 0.00 0.00 32.53 3.56
39 40 0.803117 CTGCCTCAGTGTCTGCATTG 59.197 55.000 0.00 0.00 34.17 2.82
40 41 0.109153 TGCCTCAGTGTCTGCATTGT 59.891 50.000 0.00 0.00 34.46 2.71
41 42 0.520404 GCCTCAGTGTCTGCATTGTG 59.480 55.000 0.00 0.00 34.46 3.33
42 43 1.888215 CCTCAGTGTCTGCATTGTGT 58.112 50.000 0.00 0.00 34.46 3.72
43 44 2.871637 GCCTCAGTGTCTGCATTGTGTA 60.872 50.000 0.00 0.00 34.46 2.90
44 45 3.603532 CCTCAGTGTCTGCATTGTGTAT 58.396 45.455 0.00 0.00 34.46 2.29
45 46 4.758688 CCTCAGTGTCTGCATTGTGTATA 58.241 43.478 0.00 0.00 34.46 1.47
46 47 5.178061 CCTCAGTGTCTGCATTGTGTATAA 58.822 41.667 0.00 0.00 34.46 0.98
47 48 5.819379 CCTCAGTGTCTGCATTGTGTATAAT 59.181 40.000 0.00 0.00 34.46 1.28
48 49 6.317140 CCTCAGTGTCTGCATTGTGTATAATT 59.683 38.462 0.00 0.00 34.46 1.40
49 50 7.495606 CCTCAGTGTCTGCATTGTGTATAATTA 59.504 37.037 0.00 0.00 34.46 1.40
50 51 8.962884 TCAGTGTCTGCATTGTGTATAATTAT 57.037 30.769 2.97 2.97 34.46 1.28
51 52 9.394767 TCAGTGTCTGCATTGTGTATAATTATT 57.605 29.630 2.68 0.00 34.46 1.40
69 70 9.902684 ATAATTATTATCTGATTCTCTGCCAGG 57.097 33.333 0.00 0.00 0.00 4.45
70 71 7.565190 ATTATTATCTGATTCTCTGCCAGGA 57.435 36.000 0.00 0.00 0.00 3.86
71 72 7.565190 TTATTATCTGATTCTCTGCCAGGAT 57.435 36.000 0.00 0.00 0.00 3.24
72 73 3.773418 ATCTGATTCTCTGCCAGGATG 57.227 47.619 0.00 0.00 0.00 3.51
73 74 2.755686 TCTGATTCTCTGCCAGGATGA 58.244 47.619 0.00 0.00 39.69 2.92
74 75 2.699321 TCTGATTCTCTGCCAGGATGAG 59.301 50.000 0.00 0.00 39.69 2.90
75 76 2.435069 CTGATTCTCTGCCAGGATGAGT 59.565 50.000 8.46 0.00 39.69 3.41
76 77 2.842496 TGATTCTCTGCCAGGATGAGTT 59.158 45.455 8.46 0.29 39.69 3.01
77 78 2.775911 TTCTCTGCCAGGATGAGTTG 57.224 50.000 8.46 0.00 39.69 3.16
78 79 0.251354 TCTCTGCCAGGATGAGTTGC 59.749 55.000 8.46 0.00 39.69 4.17
79 80 1.078918 TCTGCCAGGATGAGTTGCG 60.079 57.895 0.00 0.00 39.69 4.85
80 81 1.376424 CTGCCAGGATGAGTTGCGT 60.376 57.895 0.00 0.00 39.69 5.24
81 82 1.364626 CTGCCAGGATGAGTTGCGTC 61.365 60.000 0.00 0.00 39.69 5.19
82 83 1.375908 GCCAGGATGAGTTGCGTCA 60.376 57.895 0.00 0.00 39.69 4.35
83 84 0.955428 GCCAGGATGAGTTGCGTCAA 60.955 55.000 0.00 0.00 39.69 3.18
84 85 0.798776 CCAGGATGAGTTGCGTCAAC 59.201 55.000 12.81 12.81 43.83 3.18
85 86 1.511850 CAGGATGAGTTGCGTCAACA 58.488 50.000 19.82 5.71 45.66 3.33
86 87 1.462283 CAGGATGAGTTGCGTCAACAG 59.538 52.381 19.82 3.06 45.66 3.16
87 88 1.344438 AGGATGAGTTGCGTCAACAGA 59.656 47.619 19.82 9.56 45.66 3.41
88 89 2.143122 GGATGAGTTGCGTCAACAGAA 58.857 47.619 19.82 8.93 45.66 3.02
89 90 2.548057 GGATGAGTTGCGTCAACAGAAA 59.452 45.455 19.82 7.08 45.66 2.52
90 91 3.364366 GGATGAGTTGCGTCAACAGAAAG 60.364 47.826 19.82 0.00 45.66 2.62
91 92 2.899976 TGAGTTGCGTCAACAGAAAGA 58.100 42.857 19.82 0.84 45.66 2.52
92 93 3.266636 TGAGTTGCGTCAACAGAAAGAA 58.733 40.909 19.82 1.13 45.66 2.52
93 94 3.309682 TGAGTTGCGTCAACAGAAAGAAG 59.690 43.478 19.82 0.00 45.66 2.85
94 95 3.531538 AGTTGCGTCAACAGAAAGAAGA 58.468 40.909 19.82 0.00 45.66 2.87
95 96 3.557595 AGTTGCGTCAACAGAAAGAAGAG 59.442 43.478 19.82 0.00 45.66 2.85
96 97 2.483876 TGCGTCAACAGAAAGAAGAGG 58.516 47.619 0.00 0.00 0.00 3.69
97 98 2.102420 TGCGTCAACAGAAAGAAGAGGA 59.898 45.455 0.00 0.00 0.00 3.71
98 99 3.131396 GCGTCAACAGAAAGAAGAGGAA 58.869 45.455 0.00 0.00 0.00 3.36
99 100 3.560068 GCGTCAACAGAAAGAAGAGGAAA 59.440 43.478 0.00 0.00 0.00 3.13
100 101 4.552961 GCGTCAACAGAAAGAAGAGGAAAC 60.553 45.833 0.00 0.00 0.00 2.78
101 102 4.570772 CGTCAACAGAAAGAAGAGGAAACA 59.429 41.667 0.00 0.00 0.00 2.83
102 103 5.277058 CGTCAACAGAAAGAAGAGGAAACAG 60.277 44.000 0.00 0.00 0.00 3.16
103 104 5.817816 GTCAACAGAAAGAAGAGGAAACAGA 59.182 40.000 0.00 0.00 0.00 3.41
104 105 6.484977 GTCAACAGAAAGAAGAGGAAACAGAT 59.515 38.462 0.00 0.00 0.00 2.90
105 106 6.484643 TCAACAGAAAGAAGAGGAAACAGATG 59.515 38.462 0.00 0.00 0.00 2.90
106 107 6.179906 ACAGAAAGAAGAGGAAACAGATGA 57.820 37.500 0.00 0.00 0.00 2.92
107 108 6.777782 ACAGAAAGAAGAGGAAACAGATGAT 58.222 36.000 0.00 0.00 0.00 2.45
108 109 7.230027 ACAGAAAGAAGAGGAAACAGATGATT 58.770 34.615 0.00 0.00 0.00 2.57
109 110 8.378565 ACAGAAAGAAGAGGAAACAGATGATTA 58.621 33.333 0.00 0.00 0.00 1.75
110 111 8.663911 CAGAAAGAAGAGGAAACAGATGATTAC 58.336 37.037 0.00 0.00 0.00 1.89
111 112 8.601546 AGAAAGAAGAGGAAACAGATGATTACT 58.398 33.333 0.00 0.00 0.00 2.24
112 113 8.558973 AAAGAAGAGGAAACAGATGATTACTG 57.441 34.615 0.00 0.00 40.68 2.74
113 114 6.112058 AGAAGAGGAAACAGATGATTACTGC 58.888 40.000 0.00 0.00 38.74 4.40
114 115 5.690464 AGAGGAAACAGATGATTACTGCT 57.310 39.130 0.00 0.00 38.74 4.24
115 116 5.669477 AGAGGAAACAGATGATTACTGCTC 58.331 41.667 0.00 0.00 38.74 4.26
116 117 5.424895 AGAGGAAACAGATGATTACTGCTCT 59.575 40.000 0.00 0.00 38.74 4.09
117 118 5.669477 AGGAAACAGATGATTACTGCTCTC 58.331 41.667 0.00 0.00 38.74 3.20
118 119 5.188555 AGGAAACAGATGATTACTGCTCTCA 59.811 40.000 0.00 0.00 38.74 3.27
119 120 5.523188 GGAAACAGATGATTACTGCTCTCAG 59.477 44.000 0.00 0.00 45.71 3.35
120 121 4.669206 ACAGATGATTACTGCTCTCAGG 57.331 45.455 0.00 0.00 44.54 3.86
121 122 4.029520 ACAGATGATTACTGCTCTCAGGT 58.970 43.478 0.00 0.00 44.54 4.00
122 123 5.204292 ACAGATGATTACTGCTCTCAGGTA 58.796 41.667 0.00 0.00 44.54 3.08
123 124 5.837979 ACAGATGATTACTGCTCTCAGGTAT 59.162 40.000 0.00 0.00 44.54 2.73
124 125 6.326064 ACAGATGATTACTGCTCTCAGGTATT 59.674 38.462 0.00 0.00 44.54 1.89
125 126 7.147585 ACAGATGATTACTGCTCTCAGGTATTT 60.148 37.037 0.00 0.00 44.54 1.40
126 127 8.363390 CAGATGATTACTGCTCTCAGGTATTTA 58.637 37.037 0.00 0.00 44.54 1.40
127 128 9.099071 AGATGATTACTGCTCTCAGGTATTTAT 57.901 33.333 0.00 0.00 44.54 1.40
128 129 9.717942 GATGATTACTGCTCTCAGGTATTTATT 57.282 33.333 0.00 0.00 44.54 1.40
129 130 8.893219 TGATTACTGCTCTCAGGTATTTATTG 57.107 34.615 0.00 0.00 44.54 1.90
130 131 8.486210 TGATTACTGCTCTCAGGTATTTATTGT 58.514 33.333 0.00 0.00 44.54 2.71
131 132 9.331282 GATTACTGCTCTCAGGTATTTATTGTT 57.669 33.333 0.00 0.00 44.54 2.83
132 133 9.686683 ATTACTGCTCTCAGGTATTTATTGTTT 57.313 29.630 0.00 0.00 44.54 2.83
133 134 7.617041 ACTGCTCTCAGGTATTTATTGTTTC 57.383 36.000 0.00 0.00 44.54 2.78
134 135 7.168219 ACTGCTCTCAGGTATTTATTGTTTCA 58.832 34.615 0.00 0.00 44.54 2.69
135 136 7.335422 ACTGCTCTCAGGTATTTATTGTTTCAG 59.665 37.037 0.00 0.00 44.54 3.02
136 137 7.394016 TGCTCTCAGGTATTTATTGTTTCAGA 58.606 34.615 0.00 0.00 0.00 3.27
137 138 7.334421 TGCTCTCAGGTATTTATTGTTTCAGAC 59.666 37.037 0.00 0.00 0.00 3.51
138 139 7.334421 GCTCTCAGGTATTTATTGTTTCAGACA 59.666 37.037 0.00 0.00 36.19 3.41
139 140 9.388506 CTCTCAGGTATTTATTGTTTCAGACAT 57.611 33.333 0.00 0.00 38.26 3.06
140 141 9.383519 TCTCAGGTATTTATTGTTTCAGACATC 57.616 33.333 0.00 0.00 38.26 3.06
141 142 9.388506 CTCAGGTATTTATTGTTTCAGACATCT 57.611 33.333 0.00 0.00 38.26 2.90
142 143 9.166173 TCAGGTATTTATTGTTTCAGACATCTG 57.834 33.333 2.24 2.24 45.08 2.90
143 144 8.950210 CAGGTATTTATTGTTTCAGACATCTGT 58.050 33.333 8.70 0.00 44.12 3.41
144 145 9.520515 AGGTATTTATTGTTTCAGACATCTGTT 57.479 29.630 8.70 0.00 44.12 3.16
145 146 9.774742 GGTATTTATTGTTTCAGACATCTGTTC 57.225 33.333 8.70 2.30 44.12 3.18
148 149 8.908786 TTTATTGTTTCAGACATCTGTTCTCT 57.091 30.769 8.70 0.00 44.12 3.10
149 150 8.908786 TTATTGTTTCAGACATCTGTTCTCTT 57.091 30.769 8.70 0.00 44.12 2.85
150 151 9.996554 TTATTGTTTCAGACATCTGTTCTCTTA 57.003 29.630 8.70 0.00 44.12 2.10
152 153 8.539770 TTGTTTCAGACATCTGTTCTCTTATC 57.460 34.615 8.70 0.00 44.12 1.75
153 154 7.670364 TGTTTCAGACATCTGTTCTCTTATCA 58.330 34.615 8.70 0.00 44.12 2.15
154 155 7.600375 TGTTTCAGACATCTGTTCTCTTATCAC 59.400 37.037 8.70 0.00 44.12 3.06
155 156 6.840780 TCAGACATCTGTTCTCTTATCACA 57.159 37.500 8.70 0.00 44.12 3.58
156 157 6.861144 TCAGACATCTGTTCTCTTATCACAG 58.139 40.000 8.70 0.00 44.12 3.66
157 158 6.435591 TCAGACATCTGTTCTCTTATCACAGT 59.564 38.462 8.70 0.00 44.12 3.55
158 159 7.611855 TCAGACATCTGTTCTCTTATCACAGTA 59.388 37.037 8.70 0.00 44.12 2.74
159 160 7.914871 CAGACATCTGTTCTCTTATCACAGTAG 59.085 40.741 0.40 0.00 39.24 2.57
160 161 6.568869 ACATCTGTTCTCTTATCACAGTAGC 58.431 40.000 0.00 0.00 39.24 3.58
161 162 5.584253 TCTGTTCTCTTATCACAGTAGCC 57.416 43.478 0.00 0.00 39.24 3.93
162 163 5.265191 TCTGTTCTCTTATCACAGTAGCCT 58.735 41.667 0.00 0.00 39.24 4.58
163 164 5.717178 TCTGTTCTCTTATCACAGTAGCCTT 59.283 40.000 0.00 0.00 39.24 4.35
164 165 6.211584 TCTGTTCTCTTATCACAGTAGCCTTT 59.788 38.462 0.00 0.00 39.24 3.11
165 166 7.396339 TCTGTTCTCTTATCACAGTAGCCTTTA 59.604 37.037 0.00 0.00 39.24 1.85
166 167 8.079211 TGTTCTCTTATCACAGTAGCCTTTAT 57.921 34.615 0.00 0.00 0.00 1.40
167 168 7.981789 TGTTCTCTTATCACAGTAGCCTTTATG 59.018 37.037 0.00 0.00 0.00 1.90
168 169 7.898014 TCTCTTATCACAGTAGCCTTTATGA 57.102 36.000 0.00 0.00 0.00 2.15
169 170 8.484214 TCTCTTATCACAGTAGCCTTTATGAT 57.516 34.615 0.00 0.00 0.00 2.45
170 171 9.588096 TCTCTTATCACAGTAGCCTTTATGATA 57.412 33.333 0.00 0.00 0.00 2.15
178 179 9.593134 CACAGTAGCCTTTATGATATTATCTCC 57.407 37.037 5.33 0.00 0.00 3.71
179 180 8.763601 ACAGTAGCCTTTATGATATTATCTCCC 58.236 37.037 5.33 0.00 0.00 4.30
180 181 8.762645 CAGTAGCCTTTATGATATTATCTCCCA 58.237 37.037 5.33 0.00 0.00 4.37
181 182 9.338968 AGTAGCCTTTATGATATTATCTCCCAA 57.661 33.333 5.33 0.00 0.00 4.12
182 183 9.384764 GTAGCCTTTATGATATTATCTCCCAAC 57.615 37.037 5.33 0.00 0.00 3.77
183 184 7.406104 AGCCTTTATGATATTATCTCCCAACC 58.594 38.462 5.33 0.00 0.00 3.77
184 185 7.018550 AGCCTTTATGATATTATCTCCCAACCA 59.981 37.037 5.33 0.00 0.00 3.67
185 186 7.669722 GCCTTTATGATATTATCTCCCAACCAA 59.330 37.037 5.33 0.00 0.00 3.67
186 187 9.586732 CCTTTATGATATTATCTCCCAACCAAA 57.413 33.333 5.33 0.00 0.00 3.28
188 189 9.586732 TTTATGATATTATCTCCCAACCAAAGG 57.413 33.333 5.33 0.00 0.00 3.11
189 190 6.840090 TGATATTATCTCCCAACCAAAGGA 57.160 37.500 5.33 0.00 0.00 3.36
190 191 7.406620 TGATATTATCTCCCAACCAAAGGAT 57.593 36.000 5.33 0.00 0.00 3.24
191 192 7.825709 TGATATTATCTCCCAACCAAAGGATT 58.174 34.615 5.33 0.00 0.00 3.01
192 193 8.288812 TGATATTATCTCCCAACCAAAGGATTT 58.711 33.333 5.33 0.00 40.26 2.17
193 194 9.807921 GATATTATCTCCCAACCAAAGGATTTA 57.192 33.333 0.00 0.00 35.03 1.40
202 203 9.802039 TCCCAACCAAAGGATTTATATATACAC 57.198 33.333 0.00 0.00 35.03 2.90
203 204 9.581289 CCCAACCAAAGGATTTATATATACACA 57.419 33.333 0.00 0.00 35.03 3.72
245 246 8.492415 AGTTTATAGTATTATGCTCCACTGGA 57.508 34.615 0.00 0.00 0.00 3.86
246 247 8.934697 AGTTTATAGTATTATGCTCCACTGGAA 58.065 33.333 0.00 0.00 0.00 3.53
247 248 9.726438 GTTTATAGTATTATGCTCCACTGGAAT 57.274 33.333 0.00 0.00 0.00 3.01
251 252 7.805083 AGTATTATGCTCCACTGGAATATCT 57.195 36.000 0.00 0.00 0.00 1.98
252 253 7.619050 AGTATTATGCTCCACTGGAATATCTG 58.381 38.462 0.00 0.00 0.00 2.90
253 254 3.784511 ATGCTCCACTGGAATATCTGG 57.215 47.619 0.00 0.00 0.00 3.86
254 255 1.141657 TGCTCCACTGGAATATCTGGC 59.858 52.381 0.00 0.00 0.00 4.85
255 256 1.419387 GCTCCACTGGAATATCTGGCT 59.581 52.381 0.00 0.00 0.00 4.75
256 257 2.549778 GCTCCACTGGAATATCTGGCTC 60.550 54.545 0.00 0.00 0.00 4.70
257 258 2.702478 CTCCACTGGAATATCTGGCTCA 59.298 50.000 0.00 0.00 0.00 4.26
258 259 3.321039 TCCACTGGAATATCTGGCTCAT 58.679 45.455 0.00 0.00 0.00 2.90
259 260 3.326006 TCCACTGGAATATCTGGCTCATC 59.674 47.826 0.00 0.00 0.00 2.92
260 261 3.327172 CCACTGGAATATCTGGCTCATCT 59.673 47.826 0.00 0.00 0.00 2.90
261 262 4.316645 CACTGGAATATCTGGCTCATCTG 58.683 47.826 0.00 0.00 0.00 2.90
262 263 4.040095 CACTGGAATATCTGGCTCATCTGA 59.960 45.833 0.00 0.00 0.00 3.27
263 264 4.657504 ACTGGAATATCTGGCTCATCTGAA 59.342 41.667 0.00 0.00 0.00 3.02
264 265 5.310068 ACTGGAATATCTGGCTCATCTGAAT 59.690 40.000 0.00 0.00 0.00 2.57
265 266 6.183361 ACTGGAATATCTGGCTCATCTGAATT 60.183 38.462 0.00 0.00 0.00 2.17
266 267 6.236409 TGGAATATCTGGCTCATCTGAATTC 58.764 40.000 0.00 0.00 0.00 2.17
267 268 5.647225 GGAATATCTGGCTCATCTGAATTCC 59.353 44.000 2.27 0.00 34.78 3.01
268 269 5.837770 ATATCTGGCTCATCTGAATTCCA 57.162 39.130 2.27 0.00 0.00 3.53
269 270 4.726035 ATCTGGCTCATCTGAATTCCAT 57.274 40.909 2.27 0.00 0.00 3.41
270 271 4.515028 TCTGGCTCATCTGAATTCCATT 57.485 40.909 2.27 0.00 0.00 3.16
271 272 4.458397 TCTGGCTCATCTGAATTCCATTC 58.542 43.478 2.27 0.00 39.70 2.67
272 273 4.165565 TCTGGCTCATCTGAATTCCATTCT 59.834 41.667 2.27 0.00 39.96 2.40
273 274 4.204799 TGGCTCATCTGAATTCCATTCTG 58.795 43.478 2.27 0.00 39.96 3.02
274 275 3.004524 GGCTCATCTGAATTCCATTCTGC 59.995 47.826 2.27 1.39 39.96 4.26
275 276 3.630769 GCTCATCTGAATTCCATTCTGCA 59.369 43.478 2.27 0.00 39.96 4.41
276 277 4.278669 GCTCATCTGAATTCCATTCTGCAT 59.721 41.667 2.27 0.00 39.96 3.96
277 278 5.563085 GCTCATCTGAATTCCATTCTGCATC 60.563 44.000 2.27 0.00 39.96 3.91
278 279 5.691896 TCATCTGAATTCCATTCTGCATCT 58.308 37.500 2.27 0.00 39.96 2.90
279 280 6.834107 TCATCTGAATTCCATTCTGCATCTA 58.166 36.000 2.27 0.00 39.96 1.98
280 281 7.459234 TCATCTGAATTCCATTCTGCATCTAT 58.541 34.615 2.27 0.00 39.96 1.98
1872 2093 5.621555 GCACTCTTCGTCAGGTACATCTTTA 60.622 44.000 0.00 0.00 0.00 1.85
2161 2388 1.379642 GGATCGTCGTACGGGGACTT 61.380 60.000 16.52 0.00 42.81 3.01
2450 2677 5.370880 AGCAGATACAACTTCCATATCCCTT 59.629 40.000 0.00 0.00 0.00 3.95
3139 3366 6.603599 TCGAAGACTGAGAATCTCCAAAGATA 59.396 38.462 7.91 0.00 41.54 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.610398 TGAGGCAGATTCGCATAAATAAGA 58.390 37.500 0.00 0.00 0.00 2.10
5 6 5.468072 ACTGAGGCAGATTCGCATAAATAAG 59.532 40.000 0.82 0.00 35.18 1.73
6 7 5.237127 CACTGAGGCAGATTCGCATAAATAA 59.763 40.000 0.82 0.00 35.18 1.40
8 9 3.562973 CACTGAGGCAGATTCGCATAAAT 59.437 43.478 0.82 0.00 35.18 1.40
9 10 2.938451 CACTGAGGCAGATTCGCATAAA 59.062 45.455 0.82 0.00 35.18 1.40
10 11 2.093500 ACACTGAGGCAGATTCGCATAA 60.093 45.455 0.82 0.00 35.18 1.90
11 12 1.482182 ACACTGAGGCAGATTCGCATA 59.518 47.619 0.82 0.00 35.18 3.14
12 13 0.251354 ACACTGAGGCAGATTCGCAT 59.749 50.000 0.82 0.00 35.18 4.73
13 14 0.390340 GACACTGAGGCAGATTCGCA 60.390 55.000 0.82 0.00 35.18 5.10
14 15 0.108424 AGACACTGAGGCAGATTCGC 60.108 55.000 0.82 0.00 35.18 4.70
15 16 1.638133 CAGACACTGAGGCAGATTCG 58.362 55.000 0.82 0.00 35.18 3.34
16 17 1.338484 TGCAGACACTGAGGCAGATTC 60.338 52.381 0.82 0.00 35.18 2.52
17 18 0.689055 TGCAGACACTGAGGCAGATT 59.311 50.000 0.82 0.00 35.18 2.40
18 19 0.910338 ATGCAGACACTGAGGCAGAT 59.090 50.000 0.82 0.00 39.95 2.90
19 20 0.689055 AATGCAGACACTGAGGCAGA 59.311 50.000 0.82 0.00 39.95 4.26
20 21 0.803117 CAATGCAGACACTGAGGCAG 59.197 55.000 2.81 0.00 39.95 4.85
21 22 0.109153 ACAATGCAGACACTGAGGCA 59.891 50.000 2.81 0.00 41.00 4.75
22 23 0.520404 CACAATGCAGACACTGAGGC 59.480 55.000 2.81 0.00 32.44 4.70
23 24 1.888215 ACACAATGCAGACACTGAGG 58.112 50.000 2.81 0.00 32.44 3.86
24 25 6.915544 ATTATACACAATGCAGACACTGAG 57.084 37.500 2.81 0.00 32.44 3.35
25 26 8.962884 ATAATTATACACAATGCAGACACTGA 57.037 30.769 0.00 0.00 32.44 3.41
43 44 9.902684 CCTGGCAGAGAATCAGATAATAATTAT 57.097 33.333 17.94 0.00 37.82 1.28
44 45 9.104713 TCCTGGCAGAGAATCAGATAATAATTA 57.895 33.333 17.94 0.00 37.82 1.40
45 46 7.982252 TCCTGGCAGAGAATCAGATAATAATT 58.018 34.615 17.94 0.00 37.82 1.40
46 47 7.565190 TCCTGGCAGAGAATCAGATAATAAT 57.435 36.000 17.94 0.00 37.82 1.28
47 48 7.236225 TCATCCTGGCAGAGAATCAGATAATAA 59.764 37.037 17.94 0.00 37.82 1.40
48 49 6.727697 TCATCCTGGCAGAGAATCAGATAATA 59.272 38.462 17.94 0.00 37.82 0.98
49 50 5.546887 TCATCCTGGCAGAGAATCAGATAAT 59.453 40.000 17.94 0.00 37.82 1.28
50 51 4.903649 TCATCCTGGCAGAGAATCAGATAA 59.096 41.667 17.94 0.00 37.82 1.75
51 52 4.486839 TCATCCTGGCAGAGAATCAGATA 58.513 43.478 17.94 0.00 37.82 1.98
52 53 3.315596 TCATCCTGGCAGAGAATCAGAT 58.684 45.455 17.94 5.17 37.82 2.90
53 54 2.699321 CTCATCCTGGCAGAGAATCAGA 59.301 50.000 17.94 2.63 37.82 3.27
54 55 2.435069 ACTCATCCTGGCAGAGAATCAG 59.565 50.000 17.94 5.01 37.82 2.90
55 56 2.475155 ACTCATCCTGGCAGAGAATCA 58.525 47.619 17.94 0.00 37.82 2.57
56 57 3.204526 CAACTCATCCTGGCAGAGAATC 58.795 50.000 17.94 0.00 33.69 2.52
57 58 2.683152 GCAACTCATCCTGGCAGAGAAT 60.683 50.000 17.94 3.54 33.69 2.40
58 59 1.339438 GCAACTCATCCTGGCAGAGAA 60.339 52.381 17.94 0.89 33.69 2.87
59 60 0.251354 GCAACTCATCCTGGCAGAGA 59.749 55.000 17.94 12.07 33.69 3.10
60 61 1.088340 CGCAACTCATCCTGGCAGAG 61.088 60.000 17.94 8.07 35.56 3.35
61 62 1.078918 CGCAACTCATCCTGGCAGA 60.079 57.895 17.94 2.24 0.00 4.26
62 63 1.364626 GACGCAACTCATCCTGGCAG 61.365 60.000 7.75 7.75 0.00 4.85
63 64 1.375908 GACGCAACTCATCCTGGCA 60.376 57.895 0.00 0.00 0.00 4.92
64 65 0.955428 TTGACGCAACTCATCCTGGC 60.955 55.000 0.00 0.00 0.00 4.85
65 66 0.798776 GTTGACGCAACTCATCCTGG 59.201 55.000 13.26 0.00 40.73 4.45
66 67 1.462283 CTGTTGACGCAACTCATCCTG 59.538 52.381 18.81 0.00 43.85 3.86
67 68 1.344438 TCTGTTGACGCAACTCATCCT 59.656 47.619 18.81 0.00 43.85 3.24
68 69 1.795768 TCTGTTGACGCAACTCATCC 58.204 50.000 18.81 0.00 43.85 3.51
69 70 3.494626 TCTTTCTGTTGACGCAACTCATC 59.505 43.478 18.81 0.88 43.85 2.92
70 71 3.466836 TCTTTCTGTTGACGCAACTCAT 58.533 40.909 18.81 0.00 43.85 2.90
71 72 2.899976 TCTTTCTGTTGACGCAACTCA 58.100 42.857 18.81 7.01 43.85 3.41
72 73 3.555956 TCTTCTTTCTGTTGACGCAACTC 59.444 43.478 18.81 0.00 43.85 3.01
73 74 3.531538 TCTTCTTTCTGTTGACGCAACT 58.468 40.909 18.81 0.00 43.85 3.16
74 75 3.303395 CCTCTTCTTTCTGTTGACGCAAC 60.303 47.826 13.54 13.54 43.78 4.17
75 76 2.872245 CCTCTTCTTTCTGTTGACGCAA 59.128 45.455 0.00 0.00 0.00 4.85
76 77 2.102420 TCCTCTTCTTTCTGTTGACGCA 59.898 45.455 0.00 0.00 0.00 5.24
77 78 2.755650 TCCTCTTCTTTCTGTTGACGC 58.244 47.619 0.00 0.00 0.00 5.19
78 79 4.570772 TGTTTCCTCTTCTTTCTGTTGACG 59.429 41.667 0.00 0.00 0.00 4.35
79 80 5.817816 TCTGTTTCCTCTTCTTTCTGTTGAC 59.182 40.000 0.00 0.00 0.00 3.18
80 81 5.989477 TCTGTTTCCTCTTCTTTCTGTTGA 58.011 37.500 0.00 0.00 0.00 3.18
81 82 6.484643 TCATCTGTTTCCTCTTCTTTCTGTTG 59.515 38.462 0.00 0.00 0.00 3.33
82 83 6.595682 TCATCTGTTTCCTCTTCTTTCTGTT 58.404 36.000 0.00 0.00 0.00 3.16
83 84 6.179906 TCATCTGTTTCCTCTTCTTTCTGT 57.820 37.500 0.00 0.00 0.00 3.41
84 85 7.684937 AATCATCTGTTTCCTCTTCTTTCTG 57.315 36.000 0.00 0.00 0.00 3.02
85 86 8.601546 AGTAATCATCTGTTTCCTCTTCTTTCT 58.398 33.333 0.00 0.00 0.00 2.52
86 87 8.663911 CAGTAATCATCTGTTTCCTCTTCTTTC 58.336 37.037 0.00 0.00 0.00 2.62
87 88 7.120432 GCAGTAATCATCTGTTTCCTCTTCTTT 59.880 37.037 0.00 0.00 35.60 2.52
88 89 6.597280 GCAGTAATCATCTGTTTCCTCTTCTT 59.403 38.462 0.00 0.00 35.60 2.52
89 90 6.070309 AGCAGTAATCATCTGTTTCCTCTTCT 60.070 38.462 0.00 0.00 35.60 2.85
90 91 6.112058 AGCAGTAATCATCTGTTTCCTCTTC 58.888 40.000 0.00 0.00 35.60 2.87
91 92 6.059787 AGCAGTAATCATCTGTTTCCTCTT 57.940 37.500 0.00 0.00 35.60 2.85
92 93 5.424895 AGAGCAGTAATCATCTGTTTCCTCT 59.575 40.000 0.00 0.00 35.60 3.69
93 94 5.669477 AGAGCAGTAATCATCTGTTTCCTC 58.331 41.667 0.00 0.00 35.60 3.71
94 95 5.188555 TGAGAGCAGTAATCATCTGTTTCCT 59.811 40.000 0.00 0.00 35.60 3.36
95 96 5.423015 TGAGAGCAGTAATCATCTGTTTCC 58.577 41.667 0.00 0.00 35.60 3.13
96 97 5.523188 CCTGAGAGCAGTAATCATCTGTTTC 59.477 44.000 0.00 0.00 40.63 2.78
97 98 5.046014 ACCTGAGAGCAGTAATCATCTGTTT 60.046 40.000 0.00 0.00 40.63 2.83
98 99 4.469227 ACCTGAGAGCAGTAATCATCTGTT 59.531 41.667 0.00 0.00 40.63 3.16
99 100 4.029520 ACCTGAGAGCAGTAATCATCTGT 58.970 43.478 0.00 0.00 40.63 3.41
100 101 4.669206 ACCTGAGAGCAGTAATCATCTG 57.331 45.455 0.00 0.00 40.63 2.90
101 102 6.992664 AATACCTGAGAGCAGTAATCATCT 57.007 37.500 0.00 0.00 40.63 2.90
102 103 9.717942 AATAAATACCTGAGAGCAGTAATCATC 57.282 33.333 0.00 0.00 40.63 2.92
103 104 9.499479 CAATAAATACCTGAGAGCAGTAATCAT 57.501 33.333 0.00 0.00 40.63 2.45
104 105 8.486210 ACAATAAATACCTGAGAGCAGTAATCA 58.514 33.333 0.00 0.00 40.63 2.57
105 106 8.894768 ACAATAAATACCTGAGAGCAGTAATC 57.105 34.615 0.00 0.00 40.63 1.75
106 107 9.686683 AAACAATAAATACCTGAGAGCAGTAAT 57.313 29.630 0.00 0.00 40.63 1.89
107 108 9.162764 GAAACAATAAATACCTGAGAGCAGTAA 57.837 33.333 0.00 0.00 40.63 2.24
108 109 8.318412 TGAAACAATAAATACCTGAGAGCAGTA 58.682 33.333 0.00 0.00 40.63 2.74
109 110 7.168219 TGAAACAATAAATACCTGAGAGCAGT 58.832 34.615 0.00 0.00 40.63 4.40
110 111 7.550551 TCTGAAACAATAAATACCTGAGAGCAG 59.449 37.037 0.00 0.00 41.93 4.24
111 112 7.334421 GTCTGAAACAATAAATACCTGAGAGCA 59.666 37.037 0.00 0.00 0.00 4.26
112 113 7.334421 TGTCTGAAACAATAAATACCTGAGAGC 59.666 37.037 0.00 0.00 34.03 4.09
113 114 8.777865 TGTCTGAAACAATAAATACCTGAGAG 57.222 34.615 0.00 0.00 34.03 3.20
114 115 9.383519 GATGTCTGAAACAATAAATACCTGAGA 57.616 33.333 0.00 0.00 42.37 3.27
115 116 9.388506 AGATGTCTGAAACAATAAATACCTGAG 57.611 33.333 0.00 0.00 42.37 3.35
116 117 9.166173 CAGATGTCTGAAACAATAAATACCTGA 57.834 33.333 3.96 0.00 46.59 3.86
117 118 8.950210 ACAGATGTCTGAAACAATAAATACCTG 58.050 33.333 16.41 0.00 46.59 4.00
118 119 9.520515 AACAGATGTCTGAAACAATAAATACCT 57.479 29.630 16.41 0.00 46.59 3.08
119 120 9.774742 GAACAGATGTCTGAAACAATAAATACC 57.225 33.333 16.41 0.00 46.59 2.73
122 123 9.512588 AGAGAACAGATGTCTGAAACAATAAAT 57.487 29.630 16.41 0.00 46.59 1.40
123 124 8.908786 AGAGAACAGATGTCTGAAACAATAAA 57.091 30.769 16.41 0.00 46.59 1.40
124 125 8.908786 AAGAGAACAGATGTCTGAAACAATAA 57.091 30.769 16.41 0.00 46.59 1.40
126 127 9.160496 GATAAGAGAACAGATGTCTGAAACAAT 57.840 33.333 16.41 2.01 46.59 2.71
127 128 8.150296 TGATAAGAGAACAGATGTCTGAAACAA 58.850 33.333 16.41 0.00 46.59 2.83
128 129 7.600375 GTGATAAGAGAACAGATGTCTGAAACA 59.400 37.037 16.41 1.96 46.59 2.83
129 130 7.600375 TGTGATAAGAGAACAGATGTCTGAAAC 59.400 37.037 16.41 7.22 46.59 2.78
130 131 7.670364 TGTGATAAGAGAACAGATGTCTGAAA 58.330 34.615 16.41 0.00 46.59 2.69
131 132 7.039434 ACTGTGATAAGAGAACAGATGTCTGAA 60.039 37.037 16.41 0.00 46.59 3.02
132 133 6.435591 ACTGTGATAAGAGAACAGATGTCTGA 59.564 38.462 16.41 0.00 46.59 3.27
134 135 6.849085 ACTGTGATAAGAGAACAGATGTCT 57.151 37.500 8.90 0.00 43.22 3.41
135 136 6.695278 GCTACTGTGATAAGAGAACAGATGTC 59.305 42.308 8.90 0.00 43.22 3.06
136 137 6.406400 GGCTACTGTGATAAGAGAACAGATGT 60.406 42.308 8.90 0.00 43.22 3.06
137 138 5.982516 GGCTACTGTGATAAGAGAACAGATG 59.017 44.000 8.90 2.82 43.22 2.90
138 139 5.896678 AGGCTACTGTGATAAGAGAACAGAT 59.103 40.000 8.90 0.00 43.22 2.90
139 140 5.265191 AGGCTACTGTGATAAGAGAACAGA 58.735 41.667 8.90 0.00 43.22 3.41
140 141 5.590530 AGGCTACTGTGATAAGAGAACAG 57.409 43.478 0.67 0.67 45.46 3.16
141 142 6.360370 AAAGGCTACTGTGATAAGAGAACA 57.640 37.500 0.00 0.00 0.00 3.18
142 143 8.198109 TCATAAAGGCTACTGTGATAAGAGAAC 58.802 37.037 0.00 0.00 0.00 3.01
143 144 8.306313 TCATAAAGGCTACTGTGATAAGAGAA 57.694 34.615 0.00 0.00 0.00 2.87
144 145 7.898014 TCATAAAGGCTACTGTGATAAGAGA 57.102 36.000 0.00 0.00 0.00 3.10
152 153 9.593134 GGAGATAATATCATAAAGGCTACTGTG 57.407 37.037 2.84 0.00 0.00 3.66
153 154 8.763601 GGGAGATAATATCATAAAGGCTACTGT 58.236 37.037 2.84 0.00 0.00 3.55
154 155 8.762645 TGGGAGATAATATCATAAAGGCTACTG 58.237 37.037 2.84 0.00 0.00 2.74
155 156 8.917414 TGGGAGATAATATCATAAAGGCTACT 57.083 34.615 2.84 0.00 0.00 2.57
156 157 9.384764 GTTGGGAGATAATATCATAAAGGCTAC 57.615 37.037 2.84 0.00 0.00 3.58
157 158 8.548877 GGTTGGGAGATAATATCATAAAGGCTA 58.451 37.037 2.84 0.00 0.00 3.93
158 159 7.018550 TGGTTGGGAGATAATATCATAAAGGCT 59.981 37.037 2.84 0.00 0.00 4.58
159 160 7.175104 TGGTTGGGAGATAATATCATAAAGGC 58.825 38.462 2.84 0.00 0.00 4.35
160 161 9.586732 TTTGGTTGGGAGATAATATCATAAAGG 57.413 33.333 2.84 0.00 0.00 3.11
162 163 9.586732 CCTTTGGTTGGGAGATAATATCATAAA 57.413 33.333 2.84 0.00 0.00 1.40
163 164 8.954729 TCCTTTGGTTGGGAGATAATATCATAA 58.045 33.333 2.84 0.00 0.00 1.90
164 165 8.518720 TCCTTTGGTTGGGAGATAATATCATA 57.481 34.615 2.84 0.00 0.00 2.15
165 166 7.406620 TCCTTTGGTTGGGAGATAATATCAT 57.593 36.000 2.84 0.00 0.00 2.45
166 167 6.840090 TCCTTTGGTTGGGAGATAATATCA 57.160 37.500 2.84 0.00 0.00 2.15
167 168 8.712228 AAATCCTTTGGTTGGGAGATAATATC 57.288 34.615 0.00 0.00 34.89 1.63
176 177 9.802039 GTGTATATATAAATCCTTTGGTTGGGA 57.198 33.333 0.00 0.00 35.96 4.37
177 178 9.581289 TGTGTATATATAAATCCTTTGGTTGGG 57.419 33.333 0.00 0.00 0.00 4.12
219 220 9.596308 TCCAGTGGAGCATAATACTATAAACTA 57.404 33.333 8.12 0.00 0.00 2.24
220 221 8.492415 TCCAGTGGAGCATAATACTATAAACT 57.508 34.615 8.12 0.00 0.00 2.66
221 222 9.726438 ATTCCAGTGGAGCATAATACTATAAAC 57.274 33.333 12.67 0.00 31.21 2.01
225 226 9.499369 AGATATTCCAGTGGAGCATAATACTAT 57.501 33.333 12.67 1.44 31.21 2.12
226 227 8.753133 CAGATATTCCAGTGGAGCATAATACTA 58.247 37.037 12.67 0.00 31.21 1.82
227 228 7.310921 CCAGATATTCCAGTGGAGCATAATACT 60.311 40.741 12.67 7.20 31.21 2.12
228 229 6.820656 CCAGATATTCCAGTGGAGCATAATAC 59.179 42.308 12.67 5.30 31.21 1.89
229 230 6.577039 GCCAGATATTCCAGTGGAGCATAATA 60.577 42.308 12.67 7.44 31.21 0.98
230 231 5.805751 GCCAGATATTCCAGTGGAGCATAAT 60.806 44.000 12.67 5.23 31.21 1.28
231 232 4.505566 GCCAGATATTCCAGTGGAGCATAA 60.506 45.833 12.67 0.00 31.21 1.90
232 233 3.008375 GCCAGATATTCCAGTGGAGCATA 59.992 47.826 12.67 8.94 31.21 3.14
233 234 2.224719 GCCAGATATTCCAGTGGAGCAT 60.225 50.000 12.67 9.52 31.21 3.79
234 235 1.141657 GCCAGATATTCCAGTGGAGCA 59.858 52.381 12.67 4.55 31.21 4.26
235 236 1.419387 AGCCAGATATTCCAGTGGAGC 59.581 52.381 12.67 10.48 31.21 4.70
236 237 2.702478 TGAGCCAGATATTCCAGTGGAG 59.298 50.000 12.67 0.00 31.21 3.86
237 238 2.763039 TGAGCCAGATATTCCAGTGGA 58.237 47.619 8.12 8.12 31.04 4.02
238 239 3.327172 AGATGAGCCAGATATTCCAGTGG 59.673 47.826 1.40 1.40 0.00 4.00
239 240 4.040095 TCAGATGAGCCAGATATTCCAGTG 59.960 45.833 0.00 0.00 0.00 3.66
240 241 4.229639 TCAGATGAGCCAGATATTCCAGT 58.770 43.478 0.00 0.00 0.00 4.00
241 242 4.886496 TCAGATGAGCCAGATATTCCAG 57.114 45.455 0.00 0.00 0.00 3.86
242 243 5.837770 ATTCAGATGAGCCAGATATTCCA 57.162 39.130 0.00 0.00 0.00 3.53
243 244 5.647225 GGAATTCAGATGAGCCAGATATTCC 59.353 44.000 7.93 0.00 33.88 3.01
244 245 6.236409 TGGAATTCAGATGAGCCAGATATTC 58.764 40.000 7.93 0.00 0.00 1.75
245 246 6.196918 TGGAATTCAGATGAGCCAGATATT 57.803 37.500 7.93 0.00 0.00 1.28
246 247 5.837770 TGGAATTCAGATGAGCCAGATAT 57.162 39.130 7.93 0.00 0.00 1.63
247 248 5.837770 ATGGAATTCAGATGAGCCAGATA 57.162 39.130 7.93 0.00 0.00 1.98
248 249 4.726035 ATGGAATTCAGATGAGCCAGAT 57.274 40.909 7.93 0.00 0.00 2.90
249 250 4.515028 AATGGAATTCAGATGAGCCAGA 57.485 40.909 7.93 0.00 0.00 3.86
261 262 8.719648 CTAACAGATAGATGCAGAATGGAATTC 58.280 37.037 0.00 0.00 42.43 2.17
262 263 8.435187 TCTAACAGATAGATGCAGAATGGAATT 58.565 33.333 0.00 0.00 42.43 2.17
263 264 7.971201 TCTAACAGATAGATGCAGAATGGAAT 58.029 34.615 0.00 0.00 42.43 3.01
264 265 7.365497 TCTAACAGATAGATGCAGAATGGAA 57.635 36.000 0.00 0.00 42.43 3.53
265 266 6.983906 TCTAACAGATAGATGCAGAATGGA 57.016 37.500 0.00 0.00 44.23 3.41
266 267 6.988580 TGTTCTAACAGATAGATGCAGAATGG 59.011 38.462 0.00 0.00 40.32 3.16
1872 2093 2.243221 CCCAGAATCAAGAATCCAGGGT 59.757 50.000 5.52 0.00 30.62 4.34
2450 2677 7.439381 AGGTCGTTGAGAAACAGAATTACTAA 58.561 34.615 0.00 0.00 0.00 2.24
3139 3366 4.180057 GAGCGAGACTCATCAAAAGTGAT 58.820 43.478 2.82 0.00 45.80 3.06



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.