Multiple sequence alignment - TraesCS7A01G320100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G320100 chr7A 100.000 2299 0 0 1 2299 461903239 461900941 0.000000e+00 4246
1 TraesCS7A01G320100 chr7D 93.493 1998 120 5 294 2290 403424336 403422348 0.000000e+00 2961
2 TraesCS7A01G320100 chr7D 91.451 386 30 2 897 1282 595071603 595071985 5.630000e-146 527
3 TraesCS7A01G320100 chr7D 92.105 304 19 3 1 302 403437411 403437111 7.590000e-115 424
4 TraesCS7A01G320100 chrUn 91.969 386 27 3 897 1282 388831048 388830667 2.600000e-149 538
5 TraesCS7A01G320100 chrUn 91.451 386 28 3 897 1282 416410885 416411265 2.020000e-145 525
6 TraesCS7A01G320100 chrUn 83.123 397 61 6 1 395 147150929 147150537 7.810000e-95 357
7 TraesCS7A01G320100 chrUn 82.620 397 63 6 1 395 147302201 147301809 1.690000e-91 346
8 TraesCS7A01G320100 chrUn 82.368 397 64 6 1 395 147232723 147232331 7.870000e-90 340
9 TraesCS7A01G320100 chr2B 91.969 386 26 3 897 1282 474920373 474920753 9.350000e-149 536
10 TraesCS7A01G320100 chr1D 91.710 386 29 2 897 1282 51914846 51914464 1.210000e-147 532
11 TraesCS7A01G320100 chr4A 91.451 386 29 3 897 1282 583869470 583869089 5.630000e-146 527
12 TraesCS7A01G320100 chr2A 91.451 386 30 2 897 1282 335846755 335847137 5.630000e-146 527
13 TraesCS7A01G320100 chr5D 91.451 386 27 2 897 1282 503244715 503245094 2.020000e-145 525
14 TraesCS7A01G320100 chr5D 81.841 391 61 7 1893 2275 443002738 443003126 1.020000e-83 320
15 TraesCS7A01G320100 chr7B 82.872 397 62 6 1 395 671252798 671252406 3.630000e-93 351
16 TraesCS7A01G320100 chr7B 82.456 399 60 8 1 395 671180036 671179644 7.870000e-90 340
17 TraesCS7A01G320100 chr7B 82.368 397 63 7 1 395 671062210 671061819 2.830000e-89 339
18 TraesCS7A01G320100 chr7B 81.864 397 66 6 1 395 670997292 670996900 1.700000e-86 329
19 TraesCS7A01G320100 chr7B 80.789 380 68 5 1893 2270 450581584 450581208 2.230000e-75 292
20 TraesCS7A01G320100 chr7B 80.102 392 73 5 1881 2270 448731431 448731819 1.040000e-73 287
21 TraesCS7A01G320100 chr7B 88.288 111 12 1 484 593 700600931 700601041 5.150000e-27 132
22 TraesCS7A01G320100 chr4B 83.333 384 55 6 1893 2269 23672549 23672930 1.690000e-91 346
23 TraesCS7A01G320100 chr4B 81.347 386 62 8 1890 2269 639481090 639481471 2.870000e-79 305
24 TraesCS7A01G320100 chr5B 81.915 376 65 3 1893 2266 489202790 489202416 4.770000e-82 315
25 TraesCS7A01G320100 chr6D 80.526 380 70 4 1893 2269 412770338 412770716 2.890000e-74 289
26 TraesCS7A01G320100 chr6A 83.442 308 48 3 1964 2269 555746276 555746582 1.340000e-72 283
27 TraesCS7A01G320100 chr6B 88.068 176 20 1 419 593 28058649 28058474 8.320000e-50 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G320100 chr7A 461900941 461903239 2298 True 4246 4246 100.000 1 2299 1 chr7A.!!$R1 2298
1 TraesCS7A01G320100 chr7D 403422348 403424336 1988 True 2961 2961 93.493 294 2290 1 chr7D.!!$R1 1996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
249 250 0.036388 ATGCATCCTTCACGTTCGGT 60.036 50.0 0.0 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1591 1593 0.172578 TCTCGGTGAATGCGGTACTG 59.827 55.0 0.0 0.0 0.0 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.367023 GGCCACGCACGACTGGTA 62.367 66.667 0.00 0.00 0.00 3.25
30 31 2.125673 GCCACGCACGACTGGTAT 60.126 61.111 0.00 0.00 0.00 2.73
31 32 2.165301 GCCACGCACGACTGGTATC 61.165 63.158 0.00 0.00 0.00 2.24
32 33 1.518572 CCACGCACGACTGGTATCC 60.519 63.158 0.00 0.00 0.00 2.59
33 34 1.214325 CACGCACGACTGGTATCCA 59.786 57.895 0.00 0.00 0.00 3.41
34 35 1.076533 CACGCACGACTGGTATCCAC 61.077 60.000 0.00 0.00 0.00 4.02
35 36 1.214325 CGCACGACTGGTATCCACA 59.786 57.895 0.00 0.00 0.00 4.17
36 37 1.076533 CGCACGACTGGTATCCACAC 61.077 60.000 0.00 0.00 0.00 3.82
37 38 0.739813 GCACGACTGGTATCCACACC 60.740 60.000 0.00 0.00 39.20 4.16
38 39 0.457853 CACGACTGGTATCCACACCG 60.458 60.000 0.00 0.00 41.88 4.94
39 40 1.518572 CGACTGGTATCCACACCGC 60.519 63.158 0.00 0.00 41.88 5.68
40 41 1.594833 GACTGGTATCCACACCGCA 59.405 57.895 0.00 0.00 41.88 5.69
41 42 0.178068 GACTGGTATCCACACCGCAT 59.822 55.000 0.00 0.00 41.88 4.73
42 43 0.107703 ACTGGTATCCACACCGCATG 60.108 55.000 0.00 0.00 41.88 4.06
43 44 0.107703 CTGGTATCCACACCGCATGT 60.108 55.000 0.00 0.00 44.81 3.21
44 45 0.107897 TGGTATCCACACCGCATGTC 60.108 55.000 0.00 0.00 40.64 3.06
45 46 0.814010 GGTATCCACACCGCATGTCC 60.814 60.000 0.00 0.00 40.64 4.02
46 47 0.178068 GTATCCACACCGCATGTCCT 59.822 55.000 0.00 0.00 40.64 3.85
47 48 0.464036 TATCCACACCGCATGTCCTC 59.536 55.000 0.00 0.00 40.64 3.71
48 49 2.578163 ATCCACACCGCATGTCCTCG 62.578 60.000 0.00 0.00 40.64 4.63
49 50 2.048222 CACACCGCATGTCCTCGT 60.048 61.111 0.00 0.00 40.64 4.18
50 51 2.048222 ACACCGCATGTCCTCGTG 60.048 61.111 0.00 0.00 36.54 4.35
51 52 2.048222 CACCGCATGTCCTCGTGT 60.048 61.111 0.00 0.00 33.51 4.49
52 53 2.048222 ACCGCATGTCCTCGTGTG 60.048 61.111 0.00 0.00 39.82 3.82
53 54 2.261361 CCGCATGTCCTCGTGTGA 59.739 61.111 0.00 0.00 41.86 3.58
54 55 1.153568 CCGCATGTCCTCGTGTGAT 60.154 57.895 0.00 0.00 41.86 3.06
55 56 0.740868 CCGCATGTCCTCGTGTGATT 60.741 55.000 0.00 0.00 41.86 2.57
56 57 1.078709 CGCATGTCCTCGTGTGATTT 58.921 50.000 0.00 0.00 41.86 2.17
57 58 1.201954 CGCATGTCCTCGTGTGATTTG 60.202 52.381 0.00 0.00 41.86 2.32
58 59 1.806542 GCATGTCCTCGTGTGATTTGT 59.193 47.619 0.00 0.00 33.51 2.83
59 60 2.413239 GCATGTCCTCGTGTGATTTGTG 60.413 50.000 0.00 0.00 33.51 3.33
60 61 1.225855 TGTCCTCGTGTGATTTGTGC 58.774 50.000 0.00 0.00 0.00 4.57
61 62 1.225855 GTCCTCGTGTGATTTGTGCA 58.774 50.000 0.00 0.00 0.00 4.57
62 63 1.601903 GTCCTCGTGTGATTTGTGCAA 59.398 47.619 0.00 0.00 0.00 4.08
63 64 1.601903 TCCTCGTGTGATTTGTGCAAC 59.398 47.619 0.00 0.00 37.35 4.17
64 65 1.603802 CCTCGTGTGATTTGTGCAACT 59.396 47.619 0.00 0.00 38.04 3.16
65 66 2.033299 CCTCGTGTGATTTGTGCAACTT 59.967 45.455 0.00 0.00 38.04 2.66
66 67 3.038017 CTCGTGTGATTTGTGCAACTTG 58.962 45.455 0.00 0.00 38.04 3.16
67 68 2.680339 TCGTGTGATTTGTGCAACTTGA 59.320 40.909 0.00 0.00 38.04 3.02
68 69 3.127721 TCGTGTGATTTGTGCAACTTGAA 59.872 39.130 0.00 0.00 38.04 2.69
69 70 4.043750 CGTGTGATTTGTGCAACTTGAAT 58.956 39.130 0.00 0.00 38.04 2.57
70 71 5.008118 TCGTGTGATTTGTGCAACTTGAATA 59.992 36.000 0.00 0.00 38.04 1.75
71 72 5.115472 CGTGTGATTTGTGCAACTTGAATAC 59.885 40.000 0.00 0.00 38.04 1.89
72 73 5.115472 GTGTGATTTGTGCAACTTGAATACG 59.885 40.000 0.00 0.00 38.04 3.06
73 74 4.088496 GTGATTTGTGCAACTTGAATACGC 59.912 41.667 0.00 0.00 38.04 4.42
74 75 3.699779 TTTGTGCAACTTGAATACGCA 57.300 38.095 0.00 0.00 38.04 5.24
75 76 3.913548 TTGTGCAACTTGAATACGCAT 57.086 38.095 0.00 0.00 38.04 4.73
76 77 3.200294 TGTGCAACTTGAATACGCATG 57.800 42.857 0.00 0.00 38.04 4.06
77 78 2.810852 TGTGCAACTTGAATACGCATGA 59.189 40.909 0.00 0.00 38.04 3.07
78 79 3.120234 TGTGCAACTTGAATACGCATGAG 60.120 43.478 0.00 0.00 38.04 2.90
79 80 2.159531 TGCAACTTGAATACGCATGAGC 60.160 45.455 0.00 0.00 37.42 4.26
80 81 2.792542 GCAACTTGAATACGCATGAGCC 60.793 50.000 0.00 0.00 37.52 4.70
81 82 1.290203 ACTTGAATACGCATGAGCCG 58.710 50.000 0.00 0.00 37.52 5.52
82 83 1.290203 CTTGAATACGCATGAGCCGT 58.710 50.000 0.00 0.00 37.52 5.68
83 84 2.159156 ACTTGAATACGCATGAGCCGTA 60.159 45.455 0.00 1.15 37.52 4.02
84 85 2.812358 TGAATACGCATGAGCCGTAT 57.188 45.000 10.04 10.04 39.97 3.06
85 86 3.926821 TGAATACGCATGAGCCGTATA 57.073 42.857 14.55 1.55 38.53 1.47
86 87 4.245845 TGAATACGCATGAGCCGTATAA 57.754 40.909 14.55 6.48 38.53 0.98
87 88 4.234574 TGAATACGCATGAGCCGTATAAG 58.765 43.478 14.55 0.00 38.53 1.73
88 89 2.717580 TACGCATGAGCCGTATAAGG 57.282 50.000 0.00 0.00 37.52 2.69
89 90 1.037493 ACGCATGAGCCGTATAAGGA 58.963 50.000 9.10 0.00 37.52 3.36
90 91 1.618837 ACGCATGAGCCGTATAAGGAT 59.381 47.619 9.10 1.12 37.52 3.24
91 92 2.037251 ACGCATGAGCCGTATAAGGATT 59.963 45.455 9.10 0.00 37.52 3.01
92 93 3.067106 CGCATGAGCCGTATAAGGATTT 58.933 45.455 9.10 0.00 37.52 2.17
93 94 3.123621 CGCATGAGCCGTATAAGGATTTC 59.876 47.826 9.10 3.55 37.52 2.17
94 95 4.065088 GCATGAGCCGTATAAGGATTTCA 58.935 43.478 9.10 8.77 33.58 2.69
95 96 4.515191 GCATGAGCCGTATAAGGATTTCAA 59.485 41.667 9.10 0.00 33.58 2.69
96 97 5.560953 GCATGAGCCGTATAAGGATTTCAAC 60.561 44.000 9.10 2.98 33.58 3.18
97 98 4.448210 TGAGCCGTATAAGGATTTCAACC 58.552 43.478 9.10 0.00 0.00 3.77
98 99 3.813724 GAGCCGTATAAGGATTTCAACCC 59.186 47.826 9.10 0.00 0.00 4.11
99 100 2.882761 GCCGTATAAGGATTTCAACCCC 59.117 50.000 9.10 0.00 0.00 4.95
100 101 3.686120 GCCGTATAAGGATTTCAACCCCA 60.686 47.826 9.10 0.00 0.00 4.96
101 102 3.881089 CCGTATAAGGATTTCAACCCCAC 59.119 47.826 0.00 0.00 0.00 4.61
102 103 3.558418 CGTATAAGGATTTCAACCCCACG 59.442 47.826 0.00 0.00 0.00 4.94
103 104 3.732048 ATAAGGATTTCAACCCCACGT 57.268 42.857 0.00 0.00 0.00 4.49
104 105 4.847990 ATAAGGATTTCAACCCCACGTA 57.152 40.909 0.00 0.00 0.00 3.57
105 106 3.732048 AAGGATTTCAACCCCACGTAT 57.268 42.857 0.00 0.00 0.00 3.06
106 107 4.847990 AAGGATTTCAACCCCACGTATA 57.152 40.909 0.00 0.00 0.00 1.47
107 108 4.146745 AGGATTTCAACCCCACGTATAC 57.853 45.455 0.00 0.00 0.00 1.47
108 109 3.118149 AGGATTTCAACCCCACGTATACC 60.118 47.826 0.00 0.00 0.00 2.73
109 110 3.370739 GGATTTCAACCCCACGTATACCA 60.371 47.826 0.00 0.00 0.00 3.25
110 111 4.457466 GATTTCAACCCCACGTATACCAT 58.543 43.478 0.00 0.00 0.00 3.55
111 112 4.304048 TTTCAACCCCACGTATACCATT 57.696 40.909 0.00 0.00 0.00 3.16
112 113 3.547054 TCAACCCCACGTATACCATTC 57.453 47.619 0.00 0.00 0.00 2.67
113 114 2.159071 TCAACCCCACGTATACCATTCG 60.159 50.000 0.00 0.00 0.00 3.34
114 115 0.754472 ACCCCACGTATACCATTCGG 59.246 55.000 0.00 0.00 38.77 4.30
133 134 2.813061 GGTATAGCCGCGTCTTTTACA 58.187 47.619 4.92 0.00 0.00 2.41
134 135 2.537214 GGTATAGCCGCGTCTTTTACAC 59.463 50.000 4.92 0.00 0.00 2.90
135 136 1.648504 ATAGCCGCGTCTTTTACACC 58.351 50.000 4.92 0.00 0.00 4.16
136 137 0.604578 TAGCCGCGTCTTTTACACCT 59.395 50.000 4.92 0.00 0.00 4.00
137 138 0.604578 AGCCGCGTCTTTTACACCTA 59.395 50.000 4.92 0.00 0.00 3.08
138 139 1.001181 AGCCGCGTCTTTTACACCTAA 59.999 47.619 4.92 0.00 0.00 2.69
139 140 1.127397 GCCGCGTCTTTTACACCTAAC 59.873 52.381 4.92 0.00 0.00 2.34
140 141 2.406130 CCGCGTCTTTTACACCTAACA 58.594 47.619 4.92 0.00 0.00 2.41
141 142 2.156310 CCGCGTCTTTTACACCTAACAC 59.844 50.000 4.92 0.00 0.00 3.32
142 143 2.160065 CGCGTCTTTTACACCTAACACG 60.160 50.000 0.00 0.00 0.00 4.49
143 144 2.410646 GCGTCTTTTACACCTAACACGC 60.411 50.000 0.00 0.00 43.81 5.34
144 145 2.796031 CGTCTTTTACACCTAACACGCA 59.204 45.455 0.00 0.00 0.00 5.24
145 146 3.245754 CGTCTTTTACACCTAACACGCAA 59.754 43.478 0.00 0.00 0.00 4.85
146 147 4.521010 GTCTTTTACACCTAACACGCAAC 58.479 43.478 0.00 0.00 0.00 4.17
147 148 3.245754 TCTTTTACACCTAACACGCAACG 59.754 43.478 0.00 0.00 0.00 4.10
148 149 1.500108 TTACACCTAACACGCAACGG 58.500 50.000 0.00 0.00 0.00 4.44
149 150 0.388659 TACACCTAACACGCAACGGT 59.611 50.000 0.00 0.00 0.00 4.83
150 151 0.388659 ACACCTAACACGCAACGGTA 59.611 50.000 0.00 0.00 0.00 4.02
151 152 1.065358 CACCTAACACGCAACGGTAG 58.935 55.000 0.00 0.00 0.00 3.18
152 153 0.961019 ACCTAACACGCAACGGTAGA 59.039 50.000 0.00 0.00 0.00 2.59
153 154 1.547372 ACCTAACACGCAACGGTAGAT 59.453 47.619 0.00 0.00 0.00 1.98
154 155 2.754552 ACCTAACACGCAACGGTAGATA 59.245 45.455 0.00 0.00 0.00 1.98
155 156 3.181493 ACCTAACACGCAACGGTAGATAG 60.181 47.826 0.00 0.00 0.00 2.08
156 157 1.636988 AACACGCAACGGTAGATAGC 58.363 50.000 0.00 0.00 0.00 2.97
157 158 0.179119 ACACGCAACGGTAGATAGCC 60.179 55.000 0.00 0.00 0.00 3.93
158 159 0.874607 CACGCAACGGTAGATAGCCC 60.875 60.000 0.00 0.00 0.00 5.19
163 164 4.655527 CGGTAGATAGCCCGCAAG 57.344 61.111 0.00 0.00 37.43 4.01
176 177 1.439644 CGCAAGGTAGGAGAGGAGC 59.560 63.158 0.00 0.00 0.00 4.70
177 178 1.323271 CGCAAGGTAGGAGAGGAGCA 61.323 60.000 0.00 0.00 0.00 4.26
178 179 1.127343 GCAAGGTAGGAGAGGAGCAT 58.873 55.000 0.00 0.00 0.00 3.79
179 180 1.488393 GCAAGGTAGGAGAGGAGCATT 59.512 52.381 0.00 0.00 0.00 3.56
180 181 2.744494 GCAAGGTAGGAGAGGAGCATTG 60.744 54.545 0.00 0.00 0.00 2.82
181 182 2.768527 CAAGGTAGGAGAGGAGCATTGA 59.231 50.000 0.00 0.00 0.00 2.57
182 183 3.121929 AGGTAGGAGAGGAGCATTGAA 57.878 47.619 0.00 0.00 0.00 2.69
183 184 2.769095 AGGTAGGAGAGGAGCATTGAAC 59.231 50.000 0.00 0.00 0.00 3.18
184 185 2.158885 GGTAGGAGAGGAGCATTGAACC 60.159 54.545 0.00 0.00 0.00 3.62
185 186 0.539051 AGGAGAGGAGCATTGAACCG 59.461 55.000 0.00 0.00 0.00 4.44
186 187 0.537188 GGAGAGGAGCATTGAACCGA 59.463 55.000 0.00 0.00 0.00 4.69
187 188 1.472376 GGAGAGGAGCATTGAACCGAG 60.472 57.143 0.00 0.00 0.00 4.63
188 189 0.539051 AGAGGAGCATTGAACCGAGG 59.461 55.000 0.00 0.00 0.00 4.63
189 190 1.078143 AGGAGCATTGAACCGAGGC 60.078 57.895 0.00 0.00 0.00 4.70
190 191 2.464459 GGAGCATTGAACCGAGGCG 61.464 63.158 0.00 0.00 29.08 5.52
191 192 1.741770 GAGCATTGAACCGAGGCGT 60.742 57.895 0.00 0.00 29.08 5.68
192 193 0.459585 GAGCATTGAACCGAGGCGTA 60.460 55.000 0.00 0.00 29.08 4.42
193 194 0.460284 AGCATTGAACCGAGGCGTAG 60.460 55.000 0.00 0.00 29.08 3.51
194 195 1.429148 GCATTGAACCGAGGCGTAGG 61.429 60.000 3.82 3.82 0.00 3.18
206 207 2.186903 CGTAGGCCCTCACGCATT 59.813 61.111 0.00 0.00 0.00 3.56
207 208 1.440060 CGTAGGCCCTCACGCATTA 59.560 57.895 0.00 0.00 0.00 1.90
208 209 0.179094 CGTAGGCCCTCACGCATTAA 60.179 55.000 0.00 0.00 0.00 1.40
209 210 1.741055 CGTAGGCCCTCACGCATTAAA 60.741 52.381 0.00 0.00 0.00 1.52
210 211 1.669265 GTAGGCCCTCACGCATTAAAC 59.331 52.381 0.00 0.00 0.00 2.01
211 212 0.679960 AGGCCCTCACGCATTAAACC 60.680 55.000 0.00 0.00 0.00 3.27
212 213 0.963355 GGCCCTCACGCATTAAACCA 60.963 55.000 0.00 0.00 0.00 3.67
213 214 0.451783 GCCCTCACGCATTAAACCAG 59.548 55.000 0.00 0.00 0.00 4.00
214 215 0.451783 CCCTCACGCATTAAACCAGC 59.548 55.000 0.00 0.00 0.00 4.85
215 216 1.164411 CCTCACGCATTAAACCAGCA 58.836 50.000 0.00 0.00 0.00 4.41
216 217 1.539388 CCTCACGCATTAAACCAGCAA 59.461 47.619 0.00 0.00 0.00 3.91
217 218 2.414559 CCTCACGCATTAAACCAGCAAG 60.415 50.000 0.00 0.00 0.00 4.01
218 219 1.068610 TCACGCATTAAACCAGCAAGC 60.069 47.619 0.00 0.00 0.00 4.01
219 220 1.068333 CACGCATTAAACCAGCAAGCT 60.068 47.619 0.00 0.00 0.00 3.74
220 221 2.161410 CACGCATTAAACCAGCAAGCTA 59.839 45.455 0.00 0.00 0.00 3.32
221 222 2.161609 ACGCATTAAACCAGCAAGCTAC 59.838 45.455 0.00 0.00 0.00 3.58
222 223 2.477863 CGCATTAAACCAGCAAGCTACC 60.478 50.000 0.00 0.00 0.00 3.18
223 224 2.755103 GCATTAAACCAGCAAGCTACCT 59.245 45.455 0.00 0.00 0.00 3.08
224 225 3.428045 GCATTAAACCAGCAAGCTACCTG 60.428 47.826 6.57 6.57 0.00 4.00
225 226 1.821216 TAAACCAGCAAGCTACCTGC 58.179 50.000 0.36 0.36 43.29 4.85
235 236 3.702147 GCTACCTGCTCTCATGCAT 57.298 52.632 0.00 0.00 42.48 3.96
236 237 1.510776 GCTACCTGCTCTCATGCATC 58.489 55.000 0.00 0.00 42.48 3.91
237 238 1.877258 GCTACCTGCTCTCATGCATCC 60.877 57.143 0.00 0.00 42.48 3.51
238 239 1.693062 CTACCTGCTCTCATGCATCCT 59.307 52.381 0.00 0.00 42.48 3.24
239 240 0.917533 ACCTGCTCTCATGCATCCTT 59.082 50.000 0.00 0.00 42.48 3.36
240 241 1.134159 ACCTGCTCTCATGCATCCTTC 60.134 52.381 0.00 0.00 42.48 3.46
241 242 1.134189 CCTGCTCTCATGCATCCTTCA 60.134 52.381 0.00 0.00 42.48 3.02
242 243 1.941294 CTGCTCTCATGCATCCTTCAC 59.059 52.381 0.00 0.00 42.48 3.18
243 244 0.935898 GCTCTCATGCATCCTTCACG 59.064 55.000 0.00 0.00 0.00 4.35
244 245 1.741732 GCTCTCATGCATCCTTCACGT 60.742 52.381 0.00 0.00 0.00 4.49
245 246 2.625737 CTCTCATGCATCCTTCACGTT 58.374 47.619 0.00 0.00 0.00 3.99
246 247 2.606725 CTCTCATGCATCCTTCACGTTC 59.393 50.000 0.00 0.00 0.00 3.95
247 248 1.325640 CTCATGCATCCTTCACGTTCG 59.674 52.381 0.00 0.00 0.00 3.95
248 249 0.374758 CATGCATCCTTCACGTTCGG 59.625 55.000 0.00 0.00 0.00 4.30
249 250 0.036388 ATGCATCCTTCACGTTCGGT 60.036 50.000 0.00 0.00 0.00 4.69
251 252 1.787847 CATCCTTCACGTTCGGTGC 59.212 57.895 0.00 0.00 46.56 5.01
252 253 1.375523 ATCCTTCACGTTCGGTGCC 60.376 57.895 0.00 0.00 46.56 5.01
253 254 1.827399 ATCCTTCACGTTCGGTGCCT 61.827 55.000 0.00 0.00 46.56 4.75
254 255 1.180456 TCCTTCACGTTCGGTGCCTA 61.180 55.000 0.00 0.00 46.56 3.93
255 256 0.736325 CCTTCACGTTCGGTGCCTAG 60.736 60.000 0.00 0.00 46.56 3.02
256 257 0.038526 CTTCACGTTCGGTGCCTAGT 60.039 55.000 0.00 0.00 46.56 2.57
257 258 0.390124 TTCACGTTCGGTGCCTAGTT 59.610 50.000 0.00 0.00 46.56 2.24
258 259 0.319211 TCACGTTCGGTGCCTAGTTG 60.319 55.000 0.00 0.00 46.56 3.16
259 260 0.599204 CACGTTCGGTGCCTAGTTGT 60.599 55.000 0.00 0.00 40.33 3.32
260 261 0.105408 ACGTTCGGTGCCTAGTTGTT 59.895 50.000 0.00 0.00 0.00 2.83
261 262 0.511221 CGTTCGGTGCCTAGTTGTTG 59.489 55.000 0.00 0.00 0.00 3.33
262 263 1.589803 GTTCGGTGCCTAGTTGTTGT 58.410 50.000 0.00 0.00 0.00 3.32
263 264 2.758009 GTTCGGTGCCTAGTTGTTGTA 58.242 47.619 0.00 0.00 0.00 2.41
264 265 2.735134 GTTCGGTGCCTAGTTGTTGTAG 59.265 50.000 0.00 0.00 0.00 2.74
265 266 1.076332 CGGTGCCTAGTTGTTGTAGC 58.924 55.000 0.00 0.00 0.00 3.58
266 267 1.337823 CGGTGCCTAGTTGTTGTAGCT 60.338 52.381 0.00 0.00 0.00 3.32
267 268 2.347731 GGTGCCTAGTTGTTGTAGCTC 58.652 52.381 0.00 0.00 0.00 4.09
268 269 2.347731 GTGCCTAGTTGTTGTAGCTCC 58.652 52.381 0.00 0.00 0.00 4.70
269 270 1.974957 TGCCTAGTTGTTGTAGCTCCA 59.025 47.619 0.00 0.00 0.00 3.86
270 271 2.028112 TGCCTAGTTGTTGTAGCTCCAG 60.028 50.000 0.00 0.00 0.00 3.86
271 272 2.233922 GCCTAGTTGTTGTAGCTCCAGA 59.766 50.000 0.00 0.00 0.00 3.86
272 273 3.306780 GCCTAGTTGTTGTAGCTCCAGAA 60.307 47.826 0.00 0.00 0.00 3.02
273 274 4.499183 CCTAGTTGTTGTAGCTCCAGAAG 58.501 47.826 0.00 0.00 0.00 2.85
274 275 4.021016 CCTAGTTGTTGTAGCTCCAGAAGT 60.021 45.833 0.00 0.00 0.00 3.01
275 276 4.423625 AGTTGTTGTAGCTCCAGAAGTT 57.576 40.909 0.00 0.00 0.00 2.66
276 277 4.130118 AGTTGTTGTAGCTCCAGAAGTTG 58.870 43.478 0.00 0.00 0.00 3.16
277 278 2.494059 TGTTGTAGCTCCAGAAGTTGC 58.506 47.619 0.00 0.00 0.00 4.17
278 279 2.158827 TGTTGTAGCTCCAGAAGTTGCA 60.159 45.455 0.00 0.00 0.00 4.08
279 280 2.169832 TGTAGCTCCAGAAGTTGCAC 57.830 50.000 0.00 0.00 0.00 4.57
280 281 1.694150 TGTAGCTCCAGAAGTTGCACT 59.306 47.619 0.00 0.00 0.00 4.40
281 282 2.289072 TGTAGCTCCAGAAGTTGCACTC 60.289 50.000 0.00 0.00 0.00 3.51
282 283 0.761187 AGCTCCAGAAGTTGCACTCA 59.239 50.000 0.00 0.00 0.00 3.41
283 284 1.141657 AGCTCCAGAAGTTGCACTCAA 59.858 47.619 0.00 0.00 0.00 3.02
284 285 2.157738 GCTCCAGAAGTTGCACTCAAT 58.842 47.619 0.00 0.00 34.29 2.57
285 286 2.095364 GCTCCAGAAGTTGCACTCAATG 60.095 50.000 0.00 0.00 34.29 2.82
286 287 2.486982 CTCCAGAAGTTGCACTCAATGG 59.513 50.000 0.00 0.00 34.29 3.16
287 288 2.158623 TCCAGAAGTTGCACTCAATGGT 60.159 45.455 6.39 0.00 34.29 3.55
288 289 2.227388 CCAGAAGTTGCACTCAATGGTC 59.773 50.000 0.00 0.00 34.29 4.02
289 290 2.096069 CAGAAGTTGCACTCAATGGTCG 60.096 50.000 0.00 0.00 34.29 4.79
290 291 0.593128 AAGTTGCACTCAATGGTCGC 59.407 50.000 0.00 0.00 34.29 5.19
291 292 1.154413 GTTGCACTCAATGGTCGCG 60.154 57.895 0.00 0.00 34.29 5.87
292 293 1.596752 TTGCACTCAATGGTCGCGT 60.597 52.632 5.77 0.00 0.00 6.01
309 310 5.253335 GTCGCGTAGAAATTTCACATTACC 58.747 41.667 19.99 7.15 0.00 2.85
311 312 5.019498 CGCGTAGAAATTTCACATTACCAC 58.981 41.667 19.99 6.86 0.00 4.16
316 317 7.060633 CGTAGAAATTTCACATTACCACTTTGC 59.939 37.037 19.99 0.00 0.00 3.68
320 321 3.222173 TCACATTACCACTTTGCCACT 57.778 42.857 0.00 0.00 0.00 4.00
330 331 4.221924 ACCACTTTGCCACTTTACTTGTTT 59.778 37.500 0.00 0.00 0.00 2.83
360 361 9.802039 AAGATTACCAAACCTGAAATTGTACTA 57.198 29.630 0.00 0.00 0.00 1.82
372 373 7.970061 CCTGAAATTGTACTATTGTGTGGAATG 59.030 37.037 3.24 0.00 0.00 2.67
377 378 9.691362 AATTGTACTATTGTGTGGAATGTTTTC 57.309 29.630 1.55 0.00 0.00 2.29
384 385 7.765695 ATTGTGTGGAATGTTTTCTCTATGT 57.234 32.000 0.00 0.00 32.16 2.29
404 405 8.577296 TCTATGTACTATGCAGTCAACTATTCC 58.423 37.037 0.00 0.00 36.14 3.01
417 418 6.486993 AGTCAACTATTCCCAACTGAACTTTC 59.513 38.462 0.00 0.00 0.00 2.62
418 419 5.768164 TCAACTATTCCCAACTGAACTTTCC 59.232 40.000 0.00 0.00 0.00 3.13
424 425 3.053991 TCCCAACTGAACTTTCCTGAACA 60.054 43.478 0.00 0.00 0.00 3.18
486 487 5.652014 TCAGACAACTGTTCTCCACATTTTT 59.348 36.000 0.00 0.00 43.81 1.94
513 515 4.730949 ATAATGCTGCATGCTCAGTTTT 57.269 36.364 20.33 10.35 43.37 2.43
602 604 4.761235 TTACTCATATAACTCCGGCTCG 57.239 45.455 0.00 0.00 0.00 5.03
612 614 4.821589 CCGGCTCGCTCAACCCTC 62.822 72.222 0.00 0.00 0.00 4.30
638 640 1.075698 TCCTCGGACCACTTCTCTTCT 59.924 52.381 0.00 0.00 0.00 2.85
684 686 0.249398 ACATCCGCACCCTACTCAAC 59.751 55.000 0.00 0.00 0.00 3.18
703 705 0.102300 CGGACGCTGATGATGTACCA 59.898 55.000 0.00 0.00 0.00 3.25
709 711 2.479560 CGCTGATGATGTACCACTTCGA 60.480 50.000 0.00 0.00 0.00 3.71
716 718 0.448990 TGTACCACTTCGATCGTCGG 59.551 55.000 15.94 13.21 40.88 4.79
743 745 2.625823 CGCCAAATGTCCGCAACCT 61.626 57.895 0.00 0.00 0.00 3.50
747 749 0.953471 CAAATGTCCGCAACCTCCGA 60.953 55.000 0.00 0.00 0.00 4.55
800 802 1.208293 GTTCACTCAGGATCCCTCCAC 59.792 57.143 8.55 0.00 44.79 4.02
851 853 1.006102 GTCCAGGACAGACACCACG 60.006 63.158 15.43 0.00 34.27 4.94
859 861 3.311110 AGACACCACGCCCGACAT 61.311 61.111 0.00 0.00 0.00 3.06
970 972 1.153489 CTCATCAGCACCTGACCCG 60.153 63.158 0.00 0.00 43.63 5.28
1004 1006 0.464373 CCGAGGCACATTAGCATGGT 60.464 55.000 1.62 1.62 34.27 3.55
1033 1035 4.320494 CCTCCTGTTTGAATCGAAGTTTGG 60.320 45.833 0.00 0.00 0.00 3.28
1036 1038 5.534654 TCCTGTTTGAATCGAAGTTTGGAAT 59.465 36.000 0.00 0.00 0.00 3.01
1037 1039 6.040391 TCCTGTTTGAATCGAAGTTTGGAATT 59.960 34.615 0.00 0.00 0.00 2.17
1123 1125 2.021457 TCTATTCACTCGTGCGATCCA 58.979 47.619 0.00 0.00 0.00 3.41
1133 1135 3.838271 GCGATCCAGGCAGTCCGA 61.838 66.667 0.00 0.00 37.47 4.55
1136 1138 1.667154 CGATCCAGGCAGTCCGAGAA 61.667 60.000 0.00 0.00 37.47 2.87
1169 1171 1.431440 CACGGCTCCTCTCTTCTCG 59.569 63.158 0.00 0.00 0.00 4.04
1184 1186 6.303054 TCTCTTCTCGAGAATCCATACATCT 58.697 40.000 27.19 0.00 45.55 2.90
1222 1224 1.761784 AGCTATCTCTCAAGCACAGGG 59.238 52.381 0.00 0.00 41.32 4.45
1254 1256 3.036091 CCTCAATGGGAAAATGGAGCAT 58.964 45.455 0.00 0.00 0.00 3.79
1274 1276 4.378356 GCATCTAACAACGCATCTTCACAA 60.378 41.667 0.00 0.00 0.00 3.33
1280 1282 3.044986 CAACGCATCTTCACAAACCAAG 58.955 45.455 0.00 0.00 0.00 3.61
1312 1314 0.108329 AACTAAGCACGATGACGGGG 60.108 55.000 0.00 0.00 43.78 5.73
1338 1340 4.332819 CCCGGTGATTGAGAATAAGTTGAC 59.667 45.833 0.00 0.00 0.00 3.18
1343 1345 4.994217 TGATTGAGAATAAGTTGACGTGCA 59.006 37.500 0.00 0.00 0.00 4.57
1348 1350 2.525750 ATAAGTTGACGTGCAATGCG 57.474 45.000 0.00 0.00 39.03 4.73
1358 1360 0.725784 GTGCAATGCGTTGAAGGTCG 60.726 55.000 22.81 0.00 37.53 4.79
1389 1391 2.301346 CCTTGAAGGCACAAGACAAGT 58.699 47.619 20.36 0.00 46.85 3.16
1390 1392 2.033801 CCTTGAAGGCACAAGACAAGTG 59.966 50.000 20.36 0.00 46.85 3.16
1395 1397 1.111277 GGCACAAGACAAGTGGGTTT 58.889 50.000 0.00 0.00 37.46 3.27
1396 1398 1.202405 GGCACAAGACAAGTGGGTTTG 60.202 52.381 0.00 0.00 37.46 2.93
1412 1414 2.350192 GGTTTGACCTTTTGGCAAAACG 59.650 45.455 20.81 18.49 43.52 3.60
1413 1415 2.997303 GTTTGACCTTTTGGCAAAACGT 59.003 40.909 20.81 21.35 42.57 3.99
1464 1466 1.006571 CACCCTACGACTTGCACGT 60.007 57.895 6.11 6.11 45.75 4.49
1476 1478 2.806244 ACTTGCACGTGATCCAAAGTAC 59.194 45.455 22.23 0.00 0.00 2.73
1479 1481 4.260139 TGCACGTGATCCAAAGTACTTA 57.740 40.909 22.23 0.00 0.00 2.24
1486 1488 0.390209 TCCAAAGTACTTACGGCGGC 60.390 55.000 13.24 0.00 0.00 6.53
1496 1498 2.085042 TTACGGCGGCGGTGCATATA 62.085 55.000 35.05 13.83 36.28 0.86
1536 1538 2.600731 GTGACCGACTGATCTGTTCTG 58.399 52.381 6.70 1.84 0.00 3.02
1544 1546 2.899900 ACTGATCTGTTCTGCAGTACCA 59.100 45.455 19.36 9.82 45.23 3.25
1552 1554 0.320050 TCTGCAGTACCACATTCGCA 59.680 50.000 14.67 0.00 0.00 5.10
1591 1593 1.335597 TGACCGATCGATATGTTCCGC 60.336 52.381 18.66 0.00 0.00 5.54
1595 1597 2.095415 CCGATCGATATGTTCCGCAGTA 60.095 50.000 18.66 0.00 0.00 2.74
1604 1606 1.017177 GTTCCGCAGTACCGCATTCA 61.017 55.000 1.35 0.00 0.00 2.57
1607 1609 2.798501 CGCAGTACCGCATTCACCG 61.799 63.158 1.35 0.00 0.00 4.94
1608 1610 1.447140 GCAGTACCGCATTCACCGA 60.447 57.895 0.00 0.00 0.00 4.69
1673 1675 2.027192 GTGGGGCAATTCTGAGACACTA 60.027 50.000 0.00 0.00 0.00 2.74
1680 1682 5.049818 GGCAATTCTGAGACACTATGTATGC 60.050 44.000 0.00 0.00 0.00 3.14
1684 1686 5.506686 TCTGAGACACTATGTATGCTGTC 57.493 43.478 0.00 0.00 34.42 3.51
1724 1726 3.766068 CATCCATGCAGATGTAGGAGT 57.234 47.619 7.59 0.00 39.08 3.85
1806 1808 7.459795 TTTTGAACCTTTGGCAAATTTCTTT 57.540 28.000 23.91 11.38 32.27 2.52
1832 1834 4.370364 TCAACACAAGCAGTTTCTTTCC 57.630 40.909 0.00 0.00 0.00 3.13
1837 1839 3.571401 CACAAGCAGTTTCTTTCCTGGAT 59.429 43.478 0.00 0.00 0.00 3.41
1849 1851 2.806945 TCCTGGATGGTTGGATCAAC 57.193 50.000 0.00 2.46 42.89 3.18
1872 1874 8.634444 CAACTACCTAGTTAGCATCTACAATCT 58.366 37.037 0.00 0.00 44.19 2.40
1887 1889 4.021102 ACAATCTCGGTCACCAAATCTT 57.979 40.909 0.00 0.00 0.00 2.40
1888 1890 4.398319 ACAATCTCGGTCACCAAATCTTT 58.602 39.130 0.00 0.00 0.00 2.52
1984 1986 6.607735 TCACGTTCGTGTATCTCATATACA 57.392 37.500 21.61 0.00 37.40 2.29
1988 1990 9.052080 CACGTTCGTGTATCTCATATACAATAG 57.948 37.037 15.81 0.00 36.40 1.73
2054 2056 6.122277 TGGATCATCAAAGGGACATAGAAAC 58.878 40.000 0.00 0.00 0.00 2.78
2126 2128 4.549458 CAAAAGATCGCCAAAGTTCACAT 58.451 39.130 0.00 0.00 0.00 3.21
2158 2160 9.498176 ACATAAAGACGGACAAGTTTAAACTAT 57.502 29.630 20.83 12.40 38.57 2.12
2193 2195 3.078837 TGAAATTAAAGGTGGAGACGGC 58.921 45.455 0.00 0.00 0.00 5.68
2194 2196 3.244770 TGAAATTAAAGGTGGAGACGGCT 60.245 43.478 0.00 0.00 0.00 5.52
2213 2215 2.235898 GCTGATCTTCACCACTTCCTCT 59.764 50.000 0.00 0.00 0.00 3.69
2216 2218 2.398754 TCTTCACCACTTCCTCTCCA 57.601 50.000 0.00 0.00 0.00 3.86
2220 2222 1.920835 ACCACTTCCTCTCCAGGCC 60.921 63.158 0.00 0.00 40.12 5.19
2231 2233 1.203440 TCTCCAGGCCTTTACCCTTCT 60.203 52.381 0.00 0.00 0.00 2.85
2279 2281 1.592669 GCAGGTGGTCGATCATCGG 60.593 63.158 7.33 2.36 40.88 4.18
2280 2282 1.592669 CAGGTGGTCGATCATCGGC 60.593 63.158 7.33 4.79 44.91 5.54
2286 2288 1.007271 GTCGATCATCGGCGATGGT 60.007 57.895 39.82 37.05 40.15 3.55
2290 2292 0.861837 GATCATCGGCGATGGTGTTC 59.138 55.000 39.82 28.33 40.15 3.18
2291 2293 0.465705 ATCATCGGCGATGGTGTTCT 59.534 50.000 39.82 20.16 40.15 3.01
2292 2294 0.460109 TCATCGGCGATGGTGTTCTG 60.460 55.000 39.82 20.88 40.15 3.02
2293 2295 1.153369 ATCGGCGATGGTGTTCTGG 60.153 57.895 23.36 0.00 0.00 3.86
2294 2296 1.899437 ATCGGCGATGGTGTTCTGGT 61.899 55.000 23.36 0.00 0.00 4.00
2295 2297 2.100631 CGGCGATGGTGTTCTGGTC 61.101 63.158 0.00 0.00 0.00 4.02
2296 2298 2.100631 GGCGATGGTGTTCTGGTCG 61.101 63.158 0.00 0.00 35.56 4.79
2297 2299 3.474806 CGATGGTGTTCTGGTCGC 58.525 61.111 0.00 0.00 0.00 5.19
2298 2300 2.100631 CGATGGTGTTCTGGTCGCC 61.101 63.158 0.00 0.00 36.18 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.127533 GTGGCCGCATGTCCACTC 61.128 66.667 12.58 2.67 46.90 3.51
12 13 3.659089 ATACCAGTCGTGCGTGGCC 62.659 63.158 0.00 0.00 37.34 5.36
13 14 2.125673 ATACCAGTCGTGCGTGGC 60.126 61.111 1.84 0.00 37.34 5.01
14 15 1.518572 GGATACCAGTCGTGCGTGG 60.519 63.158 0.57 0.57 39.98 4.94
15 16 1.076533 GTGGATACCAGTCGTGCGTG 61.077 60.000 0.00 0.00 32.34 5.34
16 17 1.214589 GTGGATACCAGTCGTGCGT 59.785 57.895 0.00 0.00 32.34 5.24
17 18 1.076533 GTGTGGATACCAGTCGTGCG 61.077 60.000 0.00 0.00 32.34 5.34
18 19 0.739813 GGTGTGGATACCAGTCGTGC 60.740 60.000 0.00 0.00 40.54 5.34
19 20 0.457853 CGGTGTGGATACCAGTCGTG 60.458 60.000 0.00 0.00 40.89 4.35
20 21 1.888018 CGGTGTGGATACCAGTCGT 59.112 57.895 0.00 0.00 40.89 4.34
21 22 1.518572 GCGGTGTGGATACCAGTCG 60.519 63.158 0.00 0.00 40.89 4.18
22 23 0.178068 ATGCGGTGTGGATACCAGTC 59.822 55.000 0.00 0.00 40.89 3.51
23 24 0.107703 CATGCGGTGTGGATACCAGT 60.108 55.000 0.00 0.00 40.89 4.00
24 25 0.107703 ACATGCGGTGTGGATACCAG 60.108 55.000 0.00 0.00 40.28 4.00
25 26 0.107897 GACATGCGGTGTGGATACCA 60.108 55.000 0.00 0.00 42.36 3.25
26 27 0.814010 GGACATGCGGTGTGGATACC 60.814 60.000 0.00 0.00 42.36 2.73
27 28 0.178068 AGGACATGCGGTGTGGATAC 59.822 55.000 0.00 0.00 42.36 2.24
28 29 0.464036 GAGGACATGCGGTGTGGATA 59.536 55.000 0.00 0.00 42.36 2.59
29 30 1.221840 GAGGACATGCGGTGTGGAT 59.778 57.895 0.00 0.00 42.36 3.41
30 31 2.662596 GAGGACATGCGGTGTGGA 59.337 61.111 0.00 0.00 42.36 4.02
31 32 2.815211 CGAGGACATGCGGTGTGG 60.815 66.667 0.00 0.00 42.36 4.17
32 33 2.048222 ACGAGGACATGCGGTGTG 60.048 61.111 0.00 0.00 42.36 3.82
33 34 2.048222 CACGAGGACATGCGGTGT 60.048 61.111 0.00 0.00 45.83 4.16
34 35 2.048222 ACACGAGGACATGCGGTG 60.048 61.111 0.00 0.00 0.00 4.94
35 36 1.888436 ATCACACGAGGACATGCGGT 61.888 55.000 0.00 0.00 0.00 5.68
36 37 0.740868 AATCACACGAGGACATGCGG 60.741 55.000 0.00 0.00 0.00 5.69
37 38 1.078709 AAATCACACGAGGACATGCG 58.921 50.000 0.00 0.00 0.00 4.73
38 39 1.806542 ACAAATCACACGAGGACATGC 59.193 47.619 0.00 0.00 0.00 4.06
39 40 2.413239 GCACAAATCACACGAGGACATG 60.413 50.000 0.00 0.00 0.00 3.21
40 41 1.806542 GCACAAATCACACGAGGACAT 59.193 47.619 0.00 0.00 0.00 3.06
41 42 1.225855 GCACAAATCACACGAGGACA 58.774 50.000 0.00 0.00 0.00 4.02
42 43 1.225855 TGCACAAATCACACGAGGAC 58.774 50.000 0.00 0.00 0.00 3.85
43 44 1.601903 GTTGCACAAATCACACGAGGA 59.398 47.619 0.00 0.00 0.00 3.71
44 45 1.603802 AGTTGCACAAATCACACGAGG 59.396 47.619 0.00 0.00 0.00 4.63
45 46 3.038017 CAAGTTGCACAAATCACACGAG 58.962 45.455 0.00 0.00 0.00 4.18
46 47 2.680339 TCAAGTTGCACAAATCACACGA 59.320 40.909 0.00 0.00 0.00 4.35
47 48 3.063670 TCAAGTTGCACAAATCACACG 57.936 42.857 0.00 0.00 0.00 4.49
48 49 5.115472 CGTATTCAAGTTGCACAAATCACAC 59.885 40.000 0.00 0.00 0.00 3.82
49 50 5.211454 CGTATTCAAGTTGCACAAATCACA 58.789 37.500 0.00 0.00 0.00 3.58
50 51 4.088496 GCGTATTCAAGTTGCACAAATCAC 59.912 41.667 0.00 0.00 0.00 3.06
51 52 4.225984 GCGTATTCAAGTTGCACAAATCA 58.774 39.130 0.00 0.00 0.00 2.57
52 53 4.225984 TGCGTATTCAAGTTGCACAAATC 58.774 39.130 0.00 0.00 0.00 2.17
53 54 4.235939 TGCGTATTCAAGTTGCACAAAT 57.764 36.364 0.00 0.00 0.00 2.32
54 55 3.699779 TGCGTATTCAAGTTGCACAAA 57.300 38.095 0.00 0.00 0.00 2.83
55 56 3.251972 TCATGCGTATTCAAGTTGCACAA 59.748 39.130 0.00 0.00 38.54 3.33
56 57 2.810852 TCATGCGTATTCAAGTTGCACA 59.189 40.909 0.00 0.00 38.54 4.57
57 58 3.419915 CTCATGCGTATTCAAGTTGCAC 58.580 45.455 0.00 0.00 38.54 4.57
58 59 2.159531 GCTCATGCGTATTCAAGTTGCA 60.160 45.455 0.00 0.00 40.23 4.08
59 60 2.444351 GCTCATGCGTATTCAAGTTGC 58.556 47.619 0.00 0.00 0.00 4.17
60 61 2.537529 CGGCTCATGCGTATTCAAGTTG 60.538 50.000 0.00 0.00 40.82 3.16
61 62 1.665679 CGGCTCATGCGTATTCAAGTT 59.334 47.619 0.00 0.00 40.82 2.66
62 63 1.290203 CGGCTCATGCGTATTCAAGT 58.710 50.000 0.00 0.00 40.82 3.16
63 64 1.290203 ACGGCTCATGCGTATTCAAG 58.710 50.000 0.00 0.00 40.82 3.02
64 65 2.588027 TACGGCTCATGCGTATTCAA 57.412 45.000 0.65 0.00 40.82 2.69
65 66 2.812358 ATACGGCTCATGCGTATTCA 57.188 45.000 10.04 0.00 40.82 2.57
66 67 3.612860 CCTTATACGGCTCATGCGTATTC 59.387 47.826 17.94 0.00 38.63 1.75
67 68 3.257375 TCCTTATACGGCTCATGCGTATT 59.743 43.478 17.94 6.78 38.63 1.89
68 69 2.823747 TCCTTATACGGCTCATGCGTAT 59.176 45.455 17.20 17.20 39.83 3.06
69 70 2.232399 TCCTTATACGGCTCATGCGTA 58.768 47.619 6.54 6.54 40.82 4.42
70 71 1.037493 TCCTTATACGGCTCATGCGT 58.963 50.000 2.49 2.49 40.82 5.24
71 72 2.370281 ATCCTTATACGGCTCATGCG 57.630 50.000 0.00 0.00 40.82 4.73
72 73 4.065088 TGAAATCCTTATACGGCTCATGC 58.935 43.478 0.00 0.00 38.76 4.06
73 74 5.049405 GGTTGAAATCCTTATACGGCTCATG 60.049 44.000 0.00 0.00 0.00 3.07
74 75 5.063880 GGTTGAAATCCTTATACGGCTCAT 58.936 41.667 0.00 0.00 0.00 2.90
75 76 4.448210 GGTTGAAATCCTTATACGGCTCA 58.552 43.478 0.00 0.00 0.00 4.26
76 77 3.813724 GGGTTGAAATCCTTATACGGCTC 59.186 47.826 0.00 0.00 0.00 4.70
77 78 3.434596 GGGGTTGAAATCCTTATACGGCT 60.435 47.826 0.00 0.00 0.00 5.52
78 79 2.882761 GGGGTTGAAATCCTTATACGGC 59.117 50.000 0.00 0.00 0.00 5.68
79 80 3.881089 GTGGGGTTGAAATCCTTATACGG 59.119 47.826 0.00 0.00 0.00 4.02
80 81 3.558418 CGTGGGGTTGAAATCCTTATACG 59.442 47.826 0.00 0.00 0.00 3.06
81 82 4.520179 ACGTGGGGTTGAAATCCTTATAC 58.480 43.478 0.00 0.00 0.00 1.47
82 83 4.847990 ACGTGGGGTTGAAATCCTTATA 57.152 40.909 0.00 0.00 0.00 0.98
83 84 3.732048 ACGTGGGGTTGAAATCCTTAT 57.268 42.857 0.00 0.00 0.00 1.73
84 85 4.847990 ATACGTGGGGTTGAAATCCTTA 57.152 40.909 0.00 0.00 0.00 2.69
85 86 3.732048 ATACGTGGGGTTGAAATCCTT 57.268 42.857 0.00 0.00 0.00 3.36
86 87 3.118149 GGTATACGTGGGGTTGAAATCCT 60.118 47.826 0.00 0.00 0.00 3.24
87 88 3.208594 GGTATACGTGGGGTTGAAATCC 58.791 50.000 0.00 0.00 0.00 3.01
88 89 3.876341 TGGTATACGTGGGGTTGAAATC 58.124 45.455 0.00 0.00 0.00 2.17
89 90 4.513406 ATGGTATACGTGGGGTTGAAAT 57.487 40.909 0.00 0.00 0.00 2.17
90 91 4.263435 GAATGGTATACGTGGGGTTGAAA 58.737 43.478 0.00 0.00 0.00 2.69
91 92 3.679361 CGAATGGTATACGTGGGGTTGAA 60.679 47.826 0.00 0.00 0.00 2.69
92 93 2.159071 CGAATGGTATACGTGGGGTTGA 60.159 50.000 0.00 0.00 0.00 3.18
93 94 2.206750 CGAATGGTATACGTGGGGTTG 58.793 52.381 0.00 0.00 0.00 3.77
94 95 1.139455 CCGAATGGTATACGTGGGGTT 59.861 52.381 0.00 0.00 0.00 4.11
95 96 0.754472 CCGAATGGTATACGTGGGGT 59.246 55.000 0.00 0.00 0.00 4.95
96 97 3.599412 CCGAATGGTATACGTGGGG 57.401 57.895 0.00 0.00 0.00 4.96
113 114 2.537214 GTGTAAAAGACGCGGCTATACC 59.463 50.000 26.16 17.35 0.00 2.73
114 115 2.537214 GGTGTAAAAGACGCGGCTATAC 59.463 50.000 18.71 22.16 39.65 1.47
115 116 2.428171 AGGTGTAAAAGACGCGGCTATA 59.572 45.455 18.71 9.50 39.65 1.31
116 117 1.206371 AGGTGTAAAAGACGCGGCTAT 59.794 47.619 18.71 10.77 39.65 2.97
117 118 0.604578 AGGTGTAAAAGACGCGGCTA 59.395 50.000 18.71 0.00 39.65 3.93
118 119 0.604578 TAGGTGTAAAAGACGCGGCT 59.395 50.000 9.84 9.84 39.65 5.52
119 120 1.127397 GTTAGGTGTAAAAGACGCGGC 59.873 52.381 12.47 7.86 39.65 6.53
120 121 2.156310 GTGTTAGGTGTAAAAGACGCGG 59.844 50.000 12.47 0.00 39.65 6.46
121 122 2.160065 CGTGTTAGGTGTAAAAGACGCG 60.160 50.000 3.53 3.53 39.65 6.01
122 123 2.410646 GCGTGTTAGGTGTAAAAGACGC 60.411 50.000 12.73 12.73 43.35 5.19
123 124 2.796031 TGCGTGTTAGGTGTAAAAGACG 59.204 45.455 1.00 1.00 0.00 4.18
124 125 4.521010 GTTGCGTGTTAGGTGTAAAAGAC 58.479 43.478 0.00 0.00 0.00 3.01
125 126 3.245754 CGTTGCGTGTTAGGTGTAAAAGA 59.754 43.478 0.00 0.00 0.00 2.52
126 127 3.537806 CGTTGCGTGTTAGGTGTAAAAG 58.462 45.455 0.00 0.00 0.00 2.27
127 128 2.287373 CCGTTGCGTGTTAGGTGTAAAA 59.713 45.455 0.00 0.00 0.00 1.52
128 129 1.865970 CCGTTGCGTGTTAGGTGTAAA 59.134 47.619 0.00 0.00 0.00 2.01
129 130 1.202510 ACCGTTGCGTGTTAGGTGTAA 60.203 47.619 0.00 0.00 33.37 2.41
130 131 0.388659 ACCGTTGCGTGTTAGGTGTA 59.611 50.000 0.00 0.00 33.37 2.90
131 132 0.388659 TACCGTTGCGTGTTAGGTGT 59.611 50.000 0.00 0.00 36.49 4.16
132 133 1.065358 CTACCGTTGCGTGTTAGGTG 58.935 55.000 0.00 0.00 36.49 4.00
133 134 0.961019 TCTACCGTTGCGTGTTAGGT 59.039 50.000 0.00 0.00 38.86 3.08
134 135 2.288961 ATCTACCGTTGCGTGTTAGG 57.711 50.000 0.00 0.00 0.00 2.69
135 136 2.787680 GCTATCTACCGTTGCGTGTTAG 59.212 50.000 0.00 0.00 0.00 2.34
136 137 2.480073 GGCTATCTACCGTTGCGTGTTA 60.480 50.000 0.00 0.00 0.00 2.41
137 138 1.636988 GCTATCTACCGTTGCGTGTT 58.363 50.000 0.00 0.00 0.00 3.32
138 139 0.179119 GGCTATCTACCGTTGCGTGT 60.179 55.000 0.00 0.00 0.00 4.49
139 140 0.874607 GGGCTATCTACCGTTGCGTG 60.875 60.000 0.00 0.00 0.00 5.34
140 141 1.440476 GGGCTATCTACCGTTGCGT 59.560 57.895 0.00 0.00 0.00 5.24
141 142 1.660575 CGGGCTATCTACCGTTGCG 60.661 63.158 0.00 0.00 44.85 4.85
142 143 4.338327 CGGGCTATCTACCGTTGC 57.662 61.111 0.00 0.00 44.85 4.17
147 148 1.272769 CTACCTTGCGGGCTATCTACC 59.727 57.143 0.00 0.00 39.10 3.18
148 149 1.272769 CCTACCTTGCGGGCTATCTAC 59.727 57.143 0.00 0.00 39.10 2.59
149 150 1.146359 TCCTACCTTGCGGGCTATCTA 59.854 52.381 0.00 0.00 39.10 1.98
150 151 0.105658 TCCTACCTTGCGGGCTATCT 60.106 55.000 0.00 0.00 39.10 1.98
151 152 0.318762 CTCCTACCTTGCGGGCTATC 59.681 60.000 0.00 0.00 39.10 2.08
152 153 0.105658 TCTCCTACCTTGCGGGCTAT 60.106 55.000 0.00 0.00 39.10 2.97
153 154 0.755698 CTCTCCTACCTTGCGGGCTA 60.756 60.000 0.00 0.00 39.10 3.93
154 155 2.038975 TCTCCTACCTTGCGGGCT 59.961 61.111 0.00 0.00 39.10 5.19
155 156 2.501610 CTCTCCTACCTTGCGGGC 59.498 66.667 0.00 0.00 39.10 6.13
156 157 1.381327 TCCTCTCCTACCTTGCGGG 60.381 63.158 0.00 0.00 41.89 6.13
157 158 2.022240 GCTCCTCTCCTACCTTGCGG 62.022 65.000 0.00 0.00 0.00 5.69
158 159 1.323271 TGCTCCTCTCCTACCTTGCG 61.323 60.000 0.00 0.00 0.00 4.85
159 160 1.127343 ATGCTCCTCTCCTACCTTGC 58.873 55.000 0.00 0.00 0.00 4.01
160 161 2.768527 TCAATGCTCCTCTCCTACCTTG 59.231 50.000 0.00 0.00 0.00 3.61
161 162 3.121929 TCAATGCTCCTCTCCTACCTT 57.878 47.619 0.00 0.00 0.00 3.50
162 163 2.769095 GTTCAATGCTCCTCTCCTACCT 59.231 50.000 0.00 0.00 0.00 3.08
163 164 2.158885 GGTTCAATGCTCCTCTCCTACC 60.159 54.545 0.00 0.00 0.00 3.18
164 165 2.482142 CGGTTCAATGCTCCTCTCCTAC 60.482 54.545 0.00 0.00 0.00 3.18
165 166 1.757118 CGGTTCAATGCTCCTCTCCTA 59.243 52.381 0.00 0.00 0.00 2.94
166 167 0.539051 CGGTTCAATGCTCCTCTCCT 59.461 55.000 0.00 0.00 0.00 3.69
167 168 0.537188 TCGGTTCAATGCTCCTCTCC 59.463 55.000 0.00 0.00 0.00 3.71
168 169 1.472376 CCTCGGTTCAATGCTCCTCTC 60.472 57.143 0.00 0.00 0.00 3.20
169 170 0.539051 CCTCGGTTCAATGCTCCTCT 59.461 55.000 0.00 0.00 0.00 3.69
170 171 1.092345 GCCTCGGTTCAATGCTCCTC 61.092 60.000 0.00 0.00 0.00 3.71
171 172 1.078143 GCCTCGGTTCAATGCTCCT 60.078 57.895 0.00 0.00 0.00 3.69
172 173 2.464459 CGCCTCGGTTCAATGCTCC 61.464 63.158 0.00 0.00 0.00 4.70
173 174 0.459585 TACGCCTCGGTTCAATGCTC 60.460 55.000 0.00 0.00 0.00 4.26
174 175 0.460284 CTACGCCTCGGTTCAATGCT 60.460 55.000 0.00 0.00 0.00 3.79
175 176 1.429148 CCTACGCCTCGGTTCAATGC 61.429 60.000 0.00 0.00 0.00 3.56
176 177 1.429148 GCCTACGCCTCGGTTCAATG 61.429 60.000 0.00 0.00 0.00 2.82
177 178 1.153429 GCCTACGCCTCGGTTCAAT 60.153 57.895 0.00 0.00 0.00 2.57
178 179 2.263540 GCCTACGCCTCGGTTCAA 59.736 61.111 0.00 0.00 0.00 2.69
189 190 0.179094 TTAATGCGTGAGGGCCTACG 60.179 55.000 22.80 22.80 42.79 3.51
190 191 1.669265 GTTTAATGCGTGAGGGCCTAC 59.331 52.381 5.73 4.47 0.00 3.18
191 192 1.407712 GGTTTAATGCGTGAGGGCCTA 60.408 52.381 5.73 0.00 0.00 3.93
192 193 0.679960 GGTTTAATGCGTGAGGGCCT 60.680 55.000 5.25 5.25 0.00 5.19
193 194 0.963355 TGGTTTAATGCGTGAGGGCC 60.963 55.000 0.00 0.00 0.00 5.80
194 195 0.451783 CTGGTTTAATGCGTGAGGGC 59.548 55.000 0.00 0.00 0.00 5.19
195 196 0.451783 GCTGGTTTAATGCGTGAGGG 59.548 55.000 0.00 0.00 0.00 4.30
196 197 1.164411 TGCTGGTTTAATGCGTGAGG 58.836 50.000 0.00 0.00 0.00 3.86
197 198 2.855180 CTTGCTGGTTTAATGCGTGAG 58.145 47.619 0.00 0.00 0.00 3.51
198 199 1.068610 GCTTGCTGGTTTAATGCGTGA 60.069 47.619 0.00 0.00 0.00 4.35
199 200 1.068333 AGCTTGCTGGTTTAATGCGTG 60.068 47.619 0.00 0.00 0.00 5.34
200 201 1.247567 AGCTTGCTGGTTTAATGCGT 58.752 45.000 0.00 0.00 0.00 5.24
201 202 2.477863 GGTAGCTTGCTGGTTTAATGCG 60.478 50.000 5.26 0.00 0.00 4.73
202 203 2.755103 AGGTAGCTTGCTGGTTTAATGC 59.245 45.455 5.26 0.00 0.00 3.56
203 204 3.428045 GCAGGTAGCTTGCTGGTTTAATG 60.428 47.826 5.26 0.00 41.15 1.90
204 205 2.755103 GCAGGTAGCTTGCTGGTTTAAT 59.245 45.455 5.26 0.00 41.15 1.40
205 206 2.159382 GCAGGTAGCTTGCTGGTTTAA 58.841 47.619 5.26 0.00 41.15 1.52
206 207 1.821216 GCAGGTAGCTTGCTGGTTTA 58.179 50.000 5.26 0.00 41.15 2.01
207 208 2.646121 GCAGGTAGCTTGCTGGTTT 58.354 52.632 5.26 0.00 41.15 3.27
208 209 4.404691 GCAGGTAGCTTGCTGGTT 57.595 55.556 5.26 0.00 41.15 3.67
224 225 0.935898 CGTGAAGGATGCATGAGAGC 59.064 55.000 2.46 0.00 29.57 4.09
225 226 2.306341 ACGTGAAGGATGCATGAGAG 57.694 50.000 2.46 0.00 32.99 3.20
226 227 2.621338 GAACGTGAAGGATGCATGAGA 58.379 47.619 2.46 0.00 32.99 3.27
227 228 1.325640 CGAACGTGAAGGATGCATGAG 59.674 52.381 2.46 0.00 32.99 2.90
228 229 1.358877 CGAACGTGAAGGATGCATGA 58.641 50.000 2.46 0.00 32.99 3.07
229 230 0.374758 CCGAACGTGAAGGATGCATG 59.625 55.000 2.46 0.00 36.44 4.06
230 231 0.036388 ACCGAACGTGAAGGATGCAT 60.036 50.000 0.00 0.00 0.00 3.96
231 232 0.948623 CACCGAACGTGAAGGATGCA 60.949 55.000 10.63 0.00 46.20 3.96
232 233 1.787847 CACCGAACGTGAAGGATGC 59.212 57.895 10.63 0.00 46.20 3.91
233 234 1.635663 GGCACCGAACGTGAAGGATG 61.636 60.000 10.63 6.76 46.20 3.51
234 235 1.375523 GGCACCGAACGTGAAGGAT 60.376 57.895 10.63 0.00 46.20 3.24
235 236 1.180456 TAGGCACCGAACGTGAAGGA 61.180 55.000 10.63 0.00 46.20 3.36
236 237 0.736325 CTAGGCACCGAACGTGAAGG 60.736 60.000 0.00 0.00 46.20 3.46
237 238 0.038526 ACTAGGCACCGAACGTGAAG 60.039 55.000 0.00 0.00 46.20 3.02
238 239 0.390124 AACTAGGCACCGAACGTGAA 59.610 50.000 0.00 0.00 46.20 3.18
239 240 0.319211 CAACTAGGCACCGAACGTGA 60.319 55.000 0.00 0.00 46.20 4.35
240 241 0.599204 ACAACTAGGCACCGAACGTG 60.599 55.000 0.00 0.00 46.03 4.49
241 242 0.105408 AACAACTAGGCACCGAACGT 59.895 50.000 0.00 0.00 0.00 3.99
242 243 0.511221 CAACAACTAGGCACCGAACG 59.489 55.000 0.00 0.00 0.00 3.95
243 244 1.589803 ACAACAACTAGGCACCGAAC 58.410 50.000 0.00 0.00 0.00 3.95
244 245 2.868839 GCTACAACAACTAGGCACCGAA 60.869 50.000 0.00 0.00 0.00 4.30
245 246 1.337447 GCTACAACAACTAGGCACCGA 60.337 52.381 0.00 0.00 0.00 4.69
246 247 1.076332 GCTACAACAACTAGGCACCG 58.924 55.000 0.00 0.00 0.00 4.94
247 248 2.347731 GAGCTACAACAACTAGGCACC 58.652 52.381 0.00 0.00 0.00 5.01
248 249 2.289444 TGGAGCTACAACAACTAGGCAC 60.289 50.000 0.00 0.00 0.00 5.01
249 250 1.974957 TGGAGCTACAACAACTAGGCA 59.025 47.619 0.00 0.00 0.00 4.75
250 251 2.233922 TCTGGAGCTACAACAACTAGGC 59.766 50.000 0.00 0.00 0.00 3.93
251 252 4.021016 ACTTCTGGAGCTACAACAACTAGG 60.021 45.833 0.00 0.00 0.00 3.02
252 253 5.140747 ACTTCTGGAGCTACAACAACTAG 57.859 43.478 0.00 0.00 0.00 2.57
253 254 5.297547 CAACTTCTGGAGCTACAACAACTA 58.702 41.667 0.00 0.00 0.00 2.24
254 255 4.130118 CAACTTCTGGAGCTACAACAACT 58.870 43.478 0.00 0.00 0.00 3.16
255 256 3.304057 GCAACTTCTGGAGCTACAACAAC 60.304 47.826 0.00 0.00 0.00 3.32
256 257 2.878406 GCAACTTCTGGAGCTACAACAA 59.122 45.455 0.00 0.00 0.00 2.83
257 258 2.158827 TGCAACTTCTGGAGCTACAACA 60.159 45.455 0.00 0.00 0.00 3.33
258 259 2.224314 GTGCAACTTCTGGAGCTACAAC 59.776 50.000 0.00 0.00 0.00 3.32
259 260 2.494059 GTGCAACTTCTGGAGCTACAA 58.506 47.619 0.00 0.00 0.00 2.41
260 261 2.169832 GTGCAACTTCTGGAGCTACA 57.830 50.000 0.00 0.00 0.00 2.74
273 274 1.154413 CGCGACCATTGAGTGCAAC 60.154 57.895 0.00 0.00 36.72 4.17
274 275 0.319986 TACGCGACCATTGAGTGCAA 60.320 50.000 15.93 0.00 38.60 4.08
275 276 0.735978 CTACGCGACCATTGAGTGCA 60.736 55.000 15.93 0.00 0.00 4.57
276 277 0.457853 TCTACGCGACCATTGAGTGC 60.458 55.000 15.93 0.00 0.00 4.40
277 278 1.990799 TTCTACGCGACCATTGAGTG 58.009 50.000 15.93 0.00 0.00 3.51
278 279 2.736144 TTTCTACGCGACCATTGAGT 57.264 45.000 15.93 0.00 0.00 3.41
279 280 4.092821 TGAAATTTCTACGCGACCATTGAG 59.907 41.667 15.93 0.00 0.00 3.02
280 281 3.997681 TGAAATTTCTACGCGACCATTGA 59.002 39.130 15.93 0.00 0.00 2.57
281 282 4.088648 GTGAAATTTCTACGCGACCATTG 58.911 43.478 15.93 0.00 0.00 2.82
282 283 3.749088 TGTGAAATTTCTACGCGACCATT 59.251 39.130 15.93 0.16 0.00 3.16
283 284 3.331150 TGTGAAATTTCTACGCGACCAT 58.669 40.909 15.93 0.00 0.00 3.55
284 285 2.756829 TGTGAAATTTCTACGCGACCA 58.243 42.857 15.93 0.00 0.00 4.02
285 286 4.336532 AATGTGAAATTTCTACGCGACC 57.663 40.909 15.93 0.00 0.00 4.79
286 287 5.163933 TGGTAATGTGAAATTTCTACGCGAC 60.164 40.000 15.93 8.20 0.00 5.19
287 288 4.930405 TGGTAATGTGAAATTTCTACGCGA 59.070 37.500 15.93 0.00 0.00 5.87
288 289 5.019498 GTGGTAATGTGAAATTTCTACGCG 58.981 41.667 18.64 3.53 0.00 6.01
289 290 6.178239 AGTGGTAATGTGAAATTTCTACGC 57.822 37.500 18.64 9.12 0.00 4.42
290 291 7.060633 GCAAAGTGGTAATGTGAAATTTCTACG 59.939 37.037 18.64 1.87 0.00 3.51
291 292 7.328493 GGCAAAGTGGTAATGTGAAATTTCTAC 59.672 37.037 18.64 14.56 0.00 2.59
292 293 7.014711 TGGCAAAGTGGTAATGTGAAATTTCTA 59.985 33.333 18.64 8.67 0.00 2.10
309 310 7.199766 TCATAAACAAGTAAAGTGGCAAAGTG 58.800 34.615 0.00 0.00 0.00 3.16
311 312 8.134895 TCTTCATAAACAAGTAAAGTGGCAAAG 58.865 33.333 0.00 0.00 0.00 2.77
330 331 9.308000 ACAATTTCAGGTTTGGTAATCTTCATA 57.692 29.630 0.00 0.00 0.00 2.15
360 361 7.765695 ACATAGAGAAAACATTCCACACAAT 57.234 32.000 0.00 0.00 0.00 2.71
372 373 8.596380 GTTGACTGCATAGTACATAGAGAAAAC 58.404 37.037 0.00 0.00 37.25 2.43
377 378 9.619316 GAATAGTTGACTGCATAGTACATAGAG 57.381 37.037 0.00 0.00 37.25 2.43
384 385 6.156256 AGTTGGGAATAGTTGACTGCATAGTA 59.844 38.462 0.00 0.00 37.25 1.82
404 405 6.430925 TGATATGTTCAGGAAAGTTCAGTTGG 59.569 38.462 0.00 0.00 0.00 3.77
462 463 4.422073 AATGTGGAGAACAGTTGTCTGA 57.578 40.909 10.14 0.00 43.64 3.27
463 464 5.505173 AAAATGTGGAGAACAGTTGTCTG 57.495 39.130 10.14 0.00 45.91 3.51
502 504 7.759489 TGTTACCTAATGAAAAACTGAGCAT 57.241 32.000 0.00 0.00 0.00 3.79
638 640 1.367346 TGGGGAACAGTGGCAGAATA 58.633 50.000 0.00 0.00 0.00 1.75
684 686 0.102300 TGGTACATCATCAGCGTCCG 59.898 55.000 0.00 0.00 0.00 4.79
703 705 1.226974 CATGGCCGACGATCGAAGT 60.227 57.895 24.34 0.00 43.74 3.01
709 711 2.662857 CGATGCATGGCCGACGAT 60.663 61.111 2.46 0.00 0.00 3.73
716 718 0.872881 GACATTTGGCGATGCATGGC 60.873 55.000 23.93 23.93 0.00 4.40
767 769 1.529865 GAGTGAACAACAACGTAGCCC 59.470 52.381 0.00 0.00 0.00 5.19
832 834 1.744320 CGTGGTGTCTGTCCTGGACA 61.744 60.000 26.79 26.79 40.50 4.02
833 835 1.006102 CGTGGTGTCTGTCCTGGAC 60.006 63.158 19.96 19.96 0.00 4.02
851 853 4.705337 TTTTACCAAACATATGTCGGGC 57.295 40.909 22.02 0.00 0.00 6.13
859 861 6.939163 AGCAAAATGGCATTTTACCAAACATA 59.061 30.769 31.36 0.00 40.27 2.29
909 911 4.106925 GAGCCCTCACAGCCCAGG 62.107 72.222 0.00 0.00 0.00 4.45
930 932 3.618150 GCACATTAAATTGTCCATGTGGC 59.382 43.478 15.77 8.57 44.49 5.01
987 989 1.755179 ACACCATGCTAATGTGCCTC 58.245 50.000 0.00 0.00 31.27 4.70
1004 1006 3.830178 TCGATTCAAACAGGAGGAGTACA 59.170 43.478 0.00 0.00 0.00 2.90
1064 1066 1.153289 CTCACCTGAATCGCCCCAG 60.153 63.158 0.00 0.00 0.00 4.45
1069 1071 0.465705 TGGGATCTCACCTGAATCGC 59.534 55.000 0.00 0.00 0.00 4.58
1123 1125 2.685380 CCCCTTCTCGGACTGCCT 60.685 66.667 0.00 0.00 33.16 4.75
1169 1171 8.584157 ACACTGATAAGAGATGTATGGATTCTC 58.416 37.037 0.00 0.00 36.88 2.87
1184 1186 7.465960 AGATAGCTCTCCATACACTGATAAGA 58.534 38.462 0.00 0.00 0.00 2.10
1231 1233 3.303049 GCTCCATTTTCCCATTGAGGAT 58.697 45.455 0.00 0.00 41.22 3.24
1254 1256 4.024387 GGTTTGTGAAGATGCGTTGTTAGA 60.024 41.667 0.00 0.00 0.00 2.10
1312 1314 5.019785 ACTTATTCTCAATCACCGGGTAC 57.980 43.478 6.32 0.00 0.00 3.34
1316 1318 4.032900 CGTCAACTTATTCTCAATCACCGG 59.967 45.833 0.00 0.00 0.00 5.28
1338 1340 0.725784 GACCTTCAACGCATTGCACG 60.726 55.000 9.69 0.00 35.63 5.34
1343 1345 3.247006 AGATACGACCTTCAACGCATT 57.753 42.857 0.00 0.00 0.00 3.56
1358 1360 2.429610 TGCCTTCAAGGTCCGTAGATAC 59.570 50.000 5.03 0.00 37.80 2.24
1371 1373 2.023673 CCACTTGTCTTGTGCCTTCAA 58.976 47.619 0.00 0.00 34.38 2.69
1389 1391 1.573108 TTGCCAAAAGGTCAAACCCA 58.427 45.000 0.00 0.00 39.75 4.51
1390 1392 2.680841 GTTTTGCCAAAAGGTCAAACCC 59.319 45.455 2.15 0.00 39.75 4.11
1395 1397 1.737363 GCACGTTTTGCCAAAAGGTCA 60.737 47.619 21.57 0.00 46.63 4.02
1396 1398 0.927537 GCACGTTTTGCCAAAAGGTC 59.072 50.000 21.57 14.16 46.63 3.85
1464 1466 2.417651 CCGCCGTAAGTACTTTGGATCA 60.418 50.000 23.60 0.66 0.00 2.92
1476 1478 3.931317 TATATGCACCGCCGCCGTAAG 62.931 57.143 0.00 0.00 0.00 2.34
1479 1481 3.918977 TATATGCACCGCCGCCGT 61.919 61.111 0.00 0.00 0.00 5.68
1496 1498 1.050988 CACCTCAGATCCATCCCGGT 61.051 60.000 0.00 0.00 35.57 5.28
1536 1538 0.673644 ACCTGCGAATGTGGTACTGC 60.674 55.000 0.00 0.00 31.50 4.40
1544 1546 2.700371 TCAGATCCATACCTGCGAATGT 59.300 45.455 0.00 0.00 0.00 2.71
1552 1554 2.045524 CACTGCCTCAGATCCATACCT 58.954 52.381 0.29 0.00 35.18 3.08
1591 1593 0.172578 TCTCGGTGAATGCGGTACTG 59.827 55.000 0.00 0.00 0.00 2.74
1595 1597 1.153369 CCATCTCGGTGAATGCGGT 60.153 57.895 0.00 0.00 0.00 5.68
1604 1606 2.175931 ACTACCTCAGATCCATCTCGGT 59.824 50.000 10.46 10.46 39.60 4.69
1607 1609 3.572255 GGTCACTACCTCAGATCCATCTC 59.428 52.174 0.00 0.00 43.08 2.75
1608 1610 3.571590 GGTCACTACCTCAGATCCATCT 58.428 50.000 0.00 0.00 43.08 2.90
1673 1675 4.281657 TGTAGGACTCAGACAGCATACAT 58.718 43.478 0.00 0.00 0.00 2.29
1684 1686 2.762887 TGCCTGAATCTGTAGGACTCAG 59.237 50.000 0.00 0.00 44.90 3.35
1724 1726 2.358615 CAGCCACGCACCTGCTAA 60.359 61.111 0.00 0.00 39.32 3.09
1806 1808 3.947196 AGAAACTGCTTGTGTTGATGTCA 59.053 39.130 0.00 0.00 0.00 3.58
1832 1834 3.200825 AGGTAGTTGATCCAACCATCCAG 59.799 47.826 6.24 0.00 44.49 3.86
1837 1839 5.105064 GCTAACTAGGTAGTTGATCCAACCA 60.105 44.000 16.19 0.00 45.44 3.67
1849 1851 7.361371 CCGAGATTGTAGATGCTAACTAGGTAG 60.361 44.444 10.69 10.69 0.00 3.18
1872 1874 3.813166 GAGTGAAAAGATTTGGTGACCGA 59.187 43.478 0.00 0.00 0.00 4.69
1887 1889 2.887889 CGCGGGCGTTTGAGTGAAA 61.888 57.895 4.64 0.00 34.35 2.69
1888 1890 3.342627 CGCGGGCGTTTGAGTGAA 61.343 61.111 4.64 0.00 34.35 3.18
1939 1941 4.373156 AGGACACAATTTAAGGAGTGCT 57.627 40.909 0.00 0.00 35.47 4.40
1940 1942 4.518970 TGAAGGACACAATTTAAGGAGTGC 59.481 41.667 0.00 0.00 35.47 4.40
1988 1990 7.452880 TGCATGATTTAGTTTGGATATAGGC 57.547 36.000 0.00 0.00 0.00 3.93
2054 2056 6.110543 TCAGAATGTGCATTTCTATGTTCG 57.889 37.500 12.81 2.95 37.40 3.95
2126 2128 6.045072 ACTTGTCCGTCTTTATGTGGATTA 57.955 37.500 0.00 0.00 32.18 1.75
2193 2195 3.118811 GGAGAGGAAGTGGTGAAGATCAG 60.119 52.174 0.00 0.00 0.00 2.90
2194 2196 2.834549 GGAGAGGAAGTGGTGAAGATCA 59.165 50.000 0.00 0.00 0.00 2.92
2213 2215 0.991920 CAGAAGGGTAAAGGCCTGGA 59.008 55.000 5.69 0.00 0.00 3.86
2258 2260 3.740128 ATGATCGACCACCTGCCGC 62.740 63.158 0.00 0.00 0.00 6.53
2270 2272 0.875908 AACACCATCGCCGATGATCG 60.876 55.000 27.59 16.73 42.09 3.69
2275 2277 1.153369 CCAGAACACCATCGCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
2279 2281 3.474806 CGACCAGAACACCATCGC 58.525 61.111 0.00 0.00 0.00 4.58
2280 2282 2.100631 GGCGACCAGAACACCATCG 61.101 63.158 0.00 0.00 35.91 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.