Multiple sequence alignment - TraesCS7A01G319900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G319900 chr7A 100.000 3392 0 0 333 3724 461037716 461034325 0.000000e+00 6264
1 TraesCS7A01G319900 chr7A 98.802 167 2 0 3263 3429 97887413 97887579 7.820000e-77 298
2 TraesCS7A01G319900 chr7A 100.000 74 0 0 1 74 461038048 461037975 1.800000e-28 137
3 TraesCS7A01G319900 chr7B 92.866 1556 71 18 1554 3102 412337292 412335770 0.000000e+00 2222
4 TraesCS7A01G319900 chr7B 89.883 939 44 14 628 1537 412338193 412337277 0.000000e+00 1160
5 TraesCS7A01G319900 chr7B 91.803 305 17 3 3428 3724 412315745 412315441 5.750000e-113 418
6 TraesCS7A01G319900 chr7B 90.759 303 20 5 3428 3724 412334368 412334068 7.490000e-107 398
7 TraesCS7A01G319900 chr7B 90.066 302 22 6 3428 3724 412335141 412334843 5.830000e-103 385
8 TraesCS7A01G319900 chr7B 91.057 246 15 3 3486 3724 412316329 412316084 3.590000e-85 326
9 TraesCS7A01G319900 chr7B 98.235 170 3 0 3263 3432 1256694 1256863 7.820000e-77 298
10 TraesCS7A01G319900 chr7B 85.240 271 15 13 333 599 412338614 412338365 4.770000e-64 255
11 TraesCS7A01G319900 chr7B 94.737 114 2 2 3155 3268 412334475 412334366 1.370000e-39 174
12 TraesCS7A01G319900 chr7B 93.913 115 1 2 3157 3268 412335250 412335139 6.400000e-38 169
13 TraesCS7A01G319900 chr7B 92.437 119 6 1 3150 3268 412333840 412333725 2.300000e-37 167
14 TraesCS7A01G319900 chr7B 91.150 113 7 1 3156 3268 412315852 412315743 2.320000e-32 150
15 TraesCS7A01G319900 chr7B 89.076 119 6 1 3150 3268 412312499 412312388 1.390000e-29 141
16 TraesCS7A01G319900 chr7B 95.588 68 2 1 3428 3494 412312390 412312323 1.410000e-19 108
17 TraesCS7A01G319900 chr7B 95.385 65 2 1 3428 3491 412333727 412333663 6.580000e-18 102
18 TraesCS7A01G319900 chr7D 92.721 1154 38 12 1919 3057 402691199 402690077 0.000000e+00 1624
19 TraesCS7A01G319900 chr7D 91.667 1044 64 10 333 1374 402692504 402691482 0.000000e+00 1424
20 TraesCS7A01G319900 chr7D 93.443 305 12 4 3428 3724 402689486 402689182 2.640000e-121 446
21 TraesCS7A01G319900 chr7D 90.000 190 7 2 1557 1745 402691374 402691196 6.220000e-58 235
22 TraesCS7A01G319900 chr7D 93.443 122 4 2 3147 3268 402689601 402689484 1.060000e-40 178
23 TraesCS7A01G319900 chr7D 91.892 111 6 2 3158 3268 402688952 402688845 6.440000e-33 152
24 TraesCS7A01G319900 chr7D 95.588 68 3 0 3168 3235 402689753 402689686 3.930000e-20 110
25 TraesCS7A01G319900 chr3A 98.256 172 3 0 3261 3432 66171040 66171211 6.040000e-78 302
26 TraesCS7A01G319900 chr5A 96.648 179 6 0 3253 3431 670399145 670399323 7.820000e-77 298
27 TraesCS7A01G319900 chr5A 95.580 181 6 2 3251 3429 4844171 4844351 4.710000e-74 289
28 TraesCS7A01G319900 chr3B 97.674 172 4 0 3262 3433 548082437 548082608 2.810000e-76 296
29 TraesCS7A01G319900 chr1A 97.143 175 4 1 3263 3437 575456743 575456916 1.010000e-75 294
30 TraesCS7A01G319900 chr1A 98.780 164 2 0 3266 3429 33222190 33222027 3.640000e-75 292
31 TraesCS7A01G319900 chr1A 92.661 109 8 0 3616 3724 11929871 11929763 1.380000e-34 158
32 TraesCS7A01G319900 chr6B 96.045 177 7 0 3257 3433 52153976 52154152 4.710000e-74 289
33 TraesCS7A01G319900 chr2A 96.571 175 5 1 3265 3439 478761522 478761349 4.710000e-74 289
34 TraesCS7A01G319900 chr2A 96.491 171 6 0 3262 3432 735538177 735538007 2.190000e-72 283
35 TraesCS7A01G319900 chr2A 92.462 199 9 5 3266 3464 746687211 746687403 2.830000e-71 279
36 TraesCS7A01G319900 chr2A 91.379 116 6 3 3613 3724 367654146 367654261 4.980000e-34 156
37 TraesCS7A01G319900 chr4A 95.480 177 8 0 3259 3435 93926637 93926813 2.190000e-72 283
38 TraesCS7A01G319900 chr5B 95.402 174 8 0 3256 3429 568844425 568844598 1.020000e-70 278
39 TraesCS7A01G319900 chr2B 95.376 173 8 0 3257 3429 794234599 794234771 3.660000e-70 276
40 TraesCS7A01G319900 chr2B 95.349 172 8 0 3258 3429 639963125 639963296 1.320000e-69 274
41 TraesCS7A01G319900 chr1D 93.396 106 7 0 3619 3724 386708390 386708285 1.380000e-34 158
42 TraesCS7A01G319900 chr3D 91.150 113 8 2 3614 3724 150820480 150820592 6.440000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G319900 chr7A 461034325 461038048 3723 True 3200.500000 6264 100.000000 1 3724 2 chr7A.!!$R1 3723
1 TraesCS7A01G319900 chr7B 412333663 412338614 4951 True 559.111111 2222 91.698444 333 3724 9 chr7B.!!$R2 3391
2 TraesCS7A01G319900 chr7B 412312323 412316329 4006 True 228.600000 418 91.734800 3150 3724 5 chr7B.!!$R1 574
3 TraesCS7A01G319900 chr7D 402688845 402692504 3659 True 595.571429 1624 92.679143 333 3724 7 chr7D.!!$R1 3391

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 888 0.027194 CGCAAATCAGATCTGCCACG 59.973 55.0 18.36 12.4 32.27 4.94 F
1298 1469 0.110486 AAACGCAGGTCATTGGTCCT 59.890 50.0 0.00 0.0 32.40 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 1939 0.036306 TGAACTTTCGGCCTCTTCCC 59.964 55.0 0.0 0.0 0.0 3.97 R
3127 3327 0.039074 CGTTCGCAACTCCACTCTCT 60.039 55.0 0.0 0.0 0.0 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.910688 AACTCTTCTTTGTCGGCTGA 57.089 45.000 0.00 0.00 0.00 4.26
20 21 3.409026 AACTCTTCTTTGTCGGCTGAT 57.591 42.857 0.00 0.00 0.00 2.90
21 22 2.693069 ACTCTTCTTTGTCGGCTGATG 58.307 47.619 0.00 0.00 0.00 3.07
22 23 2.300152 ACTCTTCTTTGTCGGCTGATGA 59.700 45.455 0.00 0.00 0.00 2.92
23 24 3.244215 ACTCTTCTTTGTCGGCTGATGAA 60.244 43.478 0.00 1.12 0.00 2.57
24 25 3.738982 TCTTCTTTGTCGGCTGATGAAA 58.261 40.909 0.00 0.40 0.00 2.69
25 26 4.133820 TCTTCTTTGTCGGCTGATGAAAA 58.866 39.130 0.00 0.00 0.00 2.29
26 27 4.578516 TCTTCTTTGTCGGCTGATGAAAAA 59.421 37.500 0.00 0.00 0.00 1.94
27 28 4.488126 TCTTTGTCGGCTGATGAAAAAG 57.512 40.909 0.00 7.46 0.00 2.27
28 29 3.882888 TCTTTGTCGGCTGATGAAAAAGT 59.117 39.130 16.21 0.00 0.00 2.66
29 30 4.338118 TCTTTGTCGGCTGATGAAAAAGTT 59.662 37.500 16.21 0.00 0.00 2.66
30 31 4.647424 TTGTCGGCTGATGAAAAAGTTT 57.353 36.364 0.00 0.00 0.00 2.66
31 32 4.223320 TGTCGGCTGATGAAAAAGTTTC 57.777 40.909 0.00 0.00 0.00 2.78
32 33 3.882888 TGTCGGCTGATGAAAAAGTTTCT 59.117 39.130 0.00 0.00 0.00 2.52
33 34 4.222114 GTCGGCTGATGAAAAAGTTTCTG 58.778 43.478 0.00 0.00 0.00 3.02
34 35 3.253188 TCGGCTGATGAAAAAGTTTCTGG 59.747 43.478 0.00 0.00 0.00 3.86
35 36 3.004734 CGGCTGATGAAAAAGTTTCTGGT 59.995 43.478 2.68 0.00 0.00 4.00
36 37 4.499696 CGGCTGATGAAAAAGTTTCTGGTT 60.500 41.667 2.68 0.00 0.00 3.67
37 38 5.359756 GGCTGATGAAAAAGTTTCTGGTTT 58.640 37.500 2.68 0.00 0.00 3.27
38 39 5.817296 GGCTGATGAAAAAGTTTCTGGTTTT 59.183 36.000 2.68 0.00 0.00 2.43
39 40 6.238184 GGCTGATGAAAAAGTTTCTGGTTTTG 60.238 38.462 2.68 0.00 0.00 2.44
40 41 6.238184 GCTGATGAAAAAGTTTCTGGTTTTGG 60.238 38.462 2.68 0.00 0.00 3.28
41 42 6.112058 TGATGAAAAAGTTTCTGGTTTTGGG 58.888 36.000 2.68 0.00 0.00 4.12
42 43 4.257731 TGAAAAAGTTTCTGGTTTTGGGC 58.742 39.130 2.68 0.00 0.00 5.36
43 44 2.595124 AAAGTTTCTGGTTTTGGGCG 57.405 45.000 0.00 0.00 0.00 6.13
44 45 0.750249 AAGTTTCTGGTTTTGGGCGG 59.250 50.000 0.00 0.00 0.00 6.13
45 46 0.396556 AGTTTCTGGTTTTGGGCGGT 60.397 50.000 0.00 0.00 0.00 5.68
46 47 0.249280 GTTTCTGGTTTTGGGCGGTG 60.249 55.000 0.00 0.00 0.00 4.94
47 48 0.684805 TTTCTGGTTTTGGGCGGTGT 60.685 50.000 0.00 0.00 0.00 4.16
48 49 1.104577 TTCTGGTTTTGGGCGGTGTC 61.105 55.000 0.00 0.00 0.00 3.67
49 50 1.826054 CTGGTTTTGGGCGGTGTCA 60.826 57.895 0.00 0.00 0.00 3.58
50 51 2.070654 CTGGTTTTGGGCGGTGTCAC 62.071 60.000 0.00 0.00 0.00 3.67
51 52 2.330041 GTTTTGGGCGGTGTCACG 59.670 61.111 0.00 0.00 0.00 4.35
52 53 2.181521 GTTTTGGGCGGTGTCACGA 61.182 57.895 0.00 0.00 35.47 4.35
53 54 1.451567 TTTTGGGCGGTGTCACGAA 60.452 52.632 0.00 0.00 35.47 3.85
54 55 1.030488 TTTTGGGCGGTGTCACGAAA 61.030 50.000 0.00 0.00 35.47 3.46
55 56 1.440938 TTTGGGCGGTGTCACGAAAG 61.441 55.000 0.00 0.00 35.47 2.62
56 57 2.029964 GGGCGGTGTCACGAAAGA 59.970 61.111 0.00 0.00 35.47 2.52
57 58 2.027625 GGGCGGTGTCACGAAAGAG 61.028 63.158 0.00 0.00 35.47 2.85
58 59 1.006571 GGCGGTGTCACGAAAGAGA 60.007 57.895 0.00 0.00 35.47 3.10
59 60 0.599204 GGCGGTGTCACGAAAGAGAA 60.599 55.000 0.00 0.00 35.47 2.87
60 61 1.429463 GCGGTGTCACGAAAGAGAAT 58.571 50.000 0.00 0.00 35.47 2.40
61 62 1.126846 GCGGTGTCACGAAAGAGAATG 59.873 52.381 0.00 0.00 35.47 2.67
62 63 1.126846 CGGTGTCACGAAAGAGAATGC 59.873 52.381 0.00 0.00 35.47 3.56
63 64 1.464997 GGTGTCACGAAAGAGAATGCC 59.535 52.381 0.00 0.00 31.00 4.40
64 65 1.126846 GTGTCACGAAAGAGAATGCCG 59.873 52.381 0.00 0.00 31.00 5.69
65 66 0.095417 GTCACGAAAGAGAATGCCGC 59.905 55.000 0.00 0.00 31.00 6.53
66 67 0.320334 TCACGAAAGAGAATGCCGCA 60.320 50.000 0.00 0.00 0.00 5.69
67 68 0.516877 CACGAAAGAGAATGCCGCAA 59.483 50.000 0.00 0.00 0.00 4.85
68 69 0.517316 ACGAAAGAGAATGCCGCAAC 59.483 50.000 0.00 0.00 0.00 4.17
69 70 0.516877 CGAAAGAGAATGCCGCAACA 59.483 50.000 0.00 0.00 0.00 3.33
70 71 1.464687 CGAAAGAGAATGCCGCAACAG 60.465 52.381 0.00 0.00 0.00 3.16
71 72 1.537202 GAAAGAGAATGCCGCAACAGT 59.463 47.619 0.00 0.00 0.00 3.55
72 73 1.609208 AAGAGAATGCCGCAACAGTT 58.391 45.000 0.00 0.00 0.00 3.16
73 74 1.609208 AGAGAATGCCGCAACAGTTT 58.391 45.000 0.00 0.00 0.00 2.66
407 408 9.962759 AAAAAGATTCGAATGTATTGTACGTAC 57.037 29.630 16.96 18.90 0.00 3.67
464 466 4.119136 GCCTTTTAGCACAACACAACAAT 58.881 39.130 0.00 0.00 0.00 2.71
481 483 8.091449 ACACAACAATAGAAACTTAGGAGAGAG 58.909 37.037 0.00 0.00 0.00 3.20
499 501 8.802267 AGGAGAGAGCAAAATATGTAGTAGATC 58.198 37.037 0.00 0.00 0.00 2.75
502 504 8.293867 AGAGAGCAAAATATGTAGTAGATCGTC 58.706 37.037 0.00 0.00 0.00 4.20
509 511 9.900710 AAAATATGTAGTAGATCGTCTGACATC 57.099 33.333 8.73 9.73 32.06 3.06
511 513 3.247886 TGTAGTAGATCGTCTGACATCGC 59.752 47.826 8.73 8.45 0.00 4.58
524 526 1.099295 ACATCGCATAGTCGGACCGA 61.099 55.000 13.88 13.88 0.00 4.69
553 559 0.744057 TGCGGTGTGCTCCATACATG 60.744 55.000 0.00 0.00 46.63 3.21
554 560 2.016961 CGGTGTGCTCCATACATGC 58.983 57.895 0.00 0.00 0.00 4.06
555 561 1.439353 CGGTGTGCTCCATACATGCC 61.439 60.000 0.00 0.00 0.00 4.40
591 597 2.871427 CGAGGATTTAGTGCGCCGC 61.871 63.158 4.18 0.00 0.00 6.53
599 605 0.528901 TTAGTGCGCCGCGATTGTAT 60.529 50.000 18.91 0.00 0.00 2.29
600 606 0.311477 TAGTGCGCCGCGATTGTATA 59.689 50.000 18.91 0.00 0.00 1.47
601 607 0.528901 AGTGCGCCGCGATTGTATAA 60.529 50.000 18.91 0.00 0.00 0.98
602 608 0.111266 GTGCGCCGCGATTGTATAAG 60.111 55.000 18.91 0.00 0.00 1.73
614 620 7.111139 CGCGATTGTATAAGCCTATAATTTCG 58.889 38.462 0.00 0.00 0.00 3.46
651 800 2.590007 GCTGATCCGCATCCGCTT 60.590 61.111 4.00 0.00 36.56 4.68
661 810 1.237285 GCATCCGCTTGCGGGATTAT 61.237 55.000 29.94 15.66 42.35 1.28
739 888 0.027194 CGCAAATCAGATCTGCCACG 59.973 55.000 18.36 12.40 32.27 4.94
740 889 1.089920 GCAAATCAGATCTGCCACGT 58.910 50.000 18.36 0.00 0.00 4.49
764 913 2.740826 CAACCGCGTGTACCCAGG 60.741 66.667 4.92 0.00 0.00 4.45
799 948 0.856641 TAGCTCACACGCAAACGAAC 59.143 50.000 0.00 0.00 43.93 3.95
810 959 2.535331 GCAAACGAACCAGCAAAAGAA 58.465 42.857 0.00 0.00 0.00 2.52
872 1033 2.905373 GGGATAAAAGCCGCCCCG 60.905 66.667 0.00 0.00 34.39 5.73
913 1074 0.603975 GCAGAGAAGAACGGCCACTT 60.604 55.000 2.24 4.92 0.00 3.16
914 1075 1.337823 GCAGAGAAGAACGGCCACTTA 60.338 52.381 2.24 0.00 0.00 2.24
1133 1300 1.140852 TCCAACTCAACCACTGTCCAG 59.859 52.381 0.00 0.00 0.00 3.86
1134 1301 1.597742 CAACTCAACCACTGTCCAGG 58.402 55.000 0.00 0.00 0.00 4.45
1137 1304 2.111043 CAACCACTGTCCAGGCGT 59.889 61.111 0.00 0.00 0.00 5.68
1143 1310 1.359848 CACTGTCCAGGCGTATGTTC 58.640 55.000 0.00 0.00 0.00 3.18
1232 1399 3.338249 TCTCTCCATTTTGCTTCCTTCG 58.662 45.455 0.00 0.00 0.00 3.79
1276 1447 3.077484 ACAGATGAAATGTGGGTCTGG 57.923 47.619 5.76 0.00 42.83 3.86
1298 1469 0.110486 AAACGCAGGTCATTGGTCCT 59.890 50.000 0.00 0.00 32.40 3.85
1393 1564 1.551452 TGGGCCCCTTTATTTGTTCG 58.449 50.000 22.27 0.00 0.00 3.95
1397 1568 1.466866 GCCCCTTTATTTGTTCGTCGC 60.467 52.381 0.00 0.00 0.00 5.19
1419 1590 6.317893 TCGCTAGGAAAGTTGTTTTTCTTTCT 59.682 34.615 14.35 6.36 44.86 2.52
1420 1591 6.414987 CGCTAGGAAAGTTGTTTTTCTTTCTG 59.585 38.462 14.35 8.47 44.86 3.02
1438 1609 9.569167 TTCTTTCTGTCTTAGTAACGATATGTG 57.431 33.333 0.00 0.00 0.00 3.21
1443 1622 6.927416 TGTCTTAGTAACGATATGTGTTGGT 58.073 36.000 0.00 0.00 0.00 3.67
1460 1639 7.375053 TGTGTTGGTTATTCCTTATTTGCTTC 58.625 34.615 0.00 0.00 37.07 3.86
1524 1703 6.698008 TCTGCACTCAGAAGAAAATCAAAA 57.302 33.333 0.00 0.00 45.69 2.44
1527 1706 8.199449 TCTGCACTCAGAAGAAAATCAAAATTT 58.801 29.630 0.00 0.00 45.69 1.82
1528 1707 8.133754 TGCACTCAGAAGAAAATCAAAATTTG 57.866 30.769 0.00 0.00 35.27 2.32
1529 1708 7.765360 TGCACTCAGAAGAAAATCAAAATTTGT 59.235 29.630 5.56 0.00 35.27 2.83
1530 1709 8.606602 GCACTCAGAAGAAAATCAAAATTTGTT 58.393 29.630 5.56 0.00 35.27 2.83
1539 1718 9.783081 AGAAAATCAAAATTTGTTTATCTGCCT 57.217 25.926 5.56 0.00 35.27 4.75
1543 1722 9.783081 AATCAAAATTTGTTTATCTGCCTTTCT 57.217 25.926 5.56 0.00 0.00 2.52
1544 1723 9.783081 ATCAAAATTTGTTTATCTGCCTTTCTT 57.217 25.926 5.56 0.00 0.00 2.52
1545 1724 9.612066 TCAAAATTTGTTTATCTGCCTTTCTTT 57.388 25.926 5.56 0.00 0.00 2.52
1551 1730 9.965824 TTTGTTTATCTGCCTTTCTTTTTAGAG 57.034 29.630 0.00 0.00 0.00 2.43
1552 1731 8.110860 TGTTTATCTGCCTTTCTTTTTAGAGG 57.889 34.615 0.00 0.00 0.00 3.69
1553 1732 7.942341 TGTTTATCTGCCTTTCTTTTTAGAGGA 59.058 33.333 0.00 0.00 0.00 3.71
1561 1740 8.264347 TGCCTTTCTTTTTAGAGGAAAATTTGT 58.736 29.630 0.00 0.00 36.89 2.83
1588 1767 2.028476 TGTCGGTACAAAGATCTGGTGG 60.028 50.000 9.86 0.00 30.91 4.61
1589 1768 1.553248 TCGGTACAAAGATCTGGTGGG 59.447 52.381 9.86 1.20 0.00 4.61
1729 1908 8.875803 CCAAACATCATTTTGAATAGATTGTGG 58.124 33.333 0.00 0.00 38.54 4.17
1760 1939 3.070159 AGGTGTGATATGGATTGTCGAGG 59.930 47.826 0.00 0.00 0.00 4.63
1778 1957 0.677098 GGGGAAGAGGCCGAAAGTTC 60.677 60.000 0.00 0.00 0.00 3.01
1779 1958 0.036306 GGGAAGAGGCCGAAAGTTCA 59.964 55.000 0.00 0.00 0.00 3.18
1780 1959 1.443802 GGAAGAGGCCGAAAGTTCAG 58.556 55.000 0.00 0.00 0.00 3.02
1784 1963 3.431725 GGCCGAAAGTTCAGCCCG 61.432 66.667 6.99 0.00 43.41 6.13
1804 1983 6.539103 AGCCCGTCTGTTATTAGAAGAAAATC 59.461 38.462 0.00 0.00 0.00 2.17
1821 2000 3.851458 AATCGGTAAATAGGTCCCCAC 57.149 47.619 0.00 0.00 0.00 4.61
1825 2004 2.974099 CGGTAAATAGGTCCCCACCATA 59.026 50.000 0.00 0.00 46.68 2.74
1838 2017 3.081804 CCCACCATACAGACCAAAGAAC 58.918 50.000 0.00 0.00 0.00 3.01
1840 2019 4.335416 CCACCATACAGACCAAAGAACAT 58.665 43.478 0.00 0.00 0.00 2.71
1846 2025 7.092891 ACCATACAGACCAAAGAACATGAGATA 60.093 37.037 0.00 0.00 0.00 1.98
1855 2034 7.611467 ACCAAAGAACATGAGATAATGCTTGTA 59.389 33.333 0.00 0.00 0.00 2.41
1856 2035 8.627403 CCAAAGAACATGAGATAATGCTTGTAT 58.373 33.333 0.00 0.00 0.00 2.29
1861 2040 8.681486 AACATGAGATAATGCTTGTATTGCTA 57.319 30.769 0.00 0.00 0.00 3.49
1867 2046 7.967908 AGATAATGCTTGTATTGCTAGGTAGT 58.032 34.615 0.00 0.00 0.00 2.73
1868 2047 9.090103 AGATAATGCTTGTATTGCTAGGTAGTA 57.910 33.333 0.00 0.00 0.00 1.82
1869 2048 9.141400 GATAATGCTTGTATTGCTAGGTAGTAC 57.859 37.037 0.00 0.00 0.00 2.73
1902 2081 5.064198 CCGGAATTAAGTGCAGTAAATTCGA 59.936 40.000 15.80 0.00 38.59 3.71
1975 2154 9.631452 CTACTGCAAGATCTCGATTTCAATATA 57.369 33.333 0.00 0.00 37.43 0.86
1981 2160 5.574830 AGATCTCGATTTCAATATAGCGTGC 59.425 40.000 0.00 0.00 0.00 5.34
1991 2170 2.140065 TATAGCGTGCTGTGATGAGC 57.860 50.000 4.25 0.00 39.62 4.26
2032 2211 5.294306 TGCAGGATTCTAGCTTAAATTCGTG 59.706 40.000 0.00 0.00 0.00 4.35
2076 2255 7.432869 TCTGTGTTTCAAACCATAGGATTTTG 58.567 34.615 0.00 0.00 0.00 2.44
2083 2262 7.243604 TCAAACCATAGGATTTTGCAAGAAT 57.756 32.000 0.00 2.97 31.52 2.40
2094 2273 7.386848 AGGATTTTGCAAGAATTTCACATGAAG 59.613 33.333 0.00 0.00 35.21 3.02
2097 2276 4.300803 TGCAAGAATTTCACATGAAGCAC 58.699 39.130 0.00 0.00 35.21 4.40
2106 2285 3.398406 TCACATGAAGCACATACACGTT 58.602 40.909 0.00 0.00 37.46 3.99
2143 2325 0.542702 CAAACACCAAGGGGCCTCAT 60.543 55.000 4.79 0.00 37.90 2.90
2164 2346 8.082852 CCTCATTGATCATCCATCAGATTTTTC 58.917 37.037 0.00 0.00 42.76 2.29
2175 2357 7.225725 TCCATCAGATTTTTCCTTTTTGCAAT 58.774 30.769 0.00 0.00 0.00 3.56
2256 2438 2.625314 GGCCTTTTCCATCTCTTATGGC 59.375 50.000 0.00 0.00 39.01 4.40
2257 2439 2.625314 GCCTTTTCCATCTCTTATGGCC 59.375 50.000 0.00 0.00 39.01 5.36
2258 2440 3.689569 GCCTTTTCCATCTCTTATGGCCT 60.690 47.826 3.32 0.00 39.01 5.19
2259 2441 4.540715 CCTTTTCCATCTCTTATGGCCTT 58.459 43.478 3.32 0.00 39.01 4.35
2260 2442 5.694995 CCTTTTCCATCTCTTATGGCCTTA 58.305 41.667 3.32 0.00 39.01 2.69
2261 2443 6.310149 CCTTTTCCATCTCTTATGGCCTTAT 58.690 40.000 3.32 0.00 39.01 1.73
2262 2444 6.208204 CCTTTTCCATCTCTTATGGCCTTATG 59.792 42.308 3.32 4.66 39.01 1.90
2263 2445 4.916041 TCCATCTCTTATGGCCTTATGG 57.084 45.455 3.32 7.66 39.01 2.74
2314 2496 6.985653 TCCATTTGGTTGGATTGAAGTAAA 57.014 33.333 0.00 0.00 40.90 2.01
2323 2505 6.239176 GGTTGGATTGAAGTAAATTGTGGTGA 60.239 38.462 0.00 0.00 0.00 4.02
2365 2549 1.939255 GCAGAAGCTCCTGTTGCTATC 59.061 52.381 0.57 0.00 40.22 2.08
2374 2558 3.577848 CTCCTGTTGCTATCAGCCTAGAT 59.422 47.826 0.00 0.00 41.51 1.98
2433 2629 3.914312 ACTGAGACGTCAATGTACCTTG 58.086 45.455 19.50 4.64 30.14 3.61
2442 2638 5.010314 ACGTCAATGTACCTTGTGTTAGAGA 59.990 40.000 10.21 0.00 0.00 3.10
2444 2640 6.035005 CGTCAATGTACCTTGTGTTAGAGATG 59.965 42.308 10.21 0.00 0.00 2.90
2667 2866 4.410743 GCAACCGCAAGCAGCCTC 62.411 66.667 0.00 0.00 41.38 4.70
2672 2871 3.570638 CGCAAGCAGCCTCCATCG 61.571 66.667 0.00 0.00 41.38 3.84
2675 2874 4.496336 AAGCAGCCTCCATCGCCC 62.496 66.667 0.00 0.00 0.00 6.13
2715 2914 1.006102 CGCTTGTCGTTGTCCTCCT 60.006 57.895 0.00 0.00 0.00 3.69
2716 2915 1.009389 CGCTTGTCGTTGTCCTCCTC 61.009 60.000 0.00 0.00 0.00 3.71
2717 2916 0.670854 GCTTGTCGTTGTCCTCCTCC 60.671 60.000 0.00 0.00 0.00 4.30
2782 2982 2.068915 TGCATGGCACTCAGGAAGA 58.931 52.632 0.00 0.00 31.71 2.87
3067 3267 9.962759 GCATAATGTCATTTTCTTGTCATTTTC 57.037 29.630 2.79 0.00 36.91 2.29
3073 3273 7.068593 TGTCATTTTCTTGTCATTTTCACCTCT 59.931 33.333 0.00 0.00 0.00 3.69
3098 3298 7.964604 TTTGCATCATTGTTGATTCATTCAA 57.035 28.000 0.00 7.07 40.70 2.69
3100 3300 6.103330 TGCATCATTGTTGATTCATTCAAGG 58.897 36.000 9.10 9.10 44.89 3.61
3102 3302 5.725325 TCATTGTTGATTCATTCAAGGCA 57.275 34.783 10.01 0.00 44.89 4.75
3103 3303 6.288941 TCATTGTTGATTCATTCAAGGCAT 57.711 33.333 10.01 0.00 44.89 4.40
3104 3304 6.334989 TCATTGTTGATTCATTCAAGGCATC 58.665 36.000 10.01 0.00 44.89 3.91
3105 3305 4.359971 TGTTGATTCATTCAAGGCATCG 57.640 40.909 0.00 0.00 44.89 3.84
3106 3306 3.758023 TGTTGATTCATTCAAGGCATCGT 59.242 39.130 0.00 0.00 44.89 3.73
3107 3307 4.218200 TGTTGATTCATTCAAGGCATCGTT 59.782 37.500 0.00 0.00 44.89 3.85
3108 3308 5.163513 GTTGATTCATTCAAGGCATCGTTT 58.836 37.500 0.00 0.00 44.89 3.60
3109 3309 6.072230 TGTTGATTCATTCAAGGCATCGTTTA 60.072 34.615 0.00 0.00 44.89 2.01
3110 3310 6.698008 TGATTCATTCAAGGCATCGTTTAT 57.302 33.333 0.00 0.00 0.00 1.40
3111 3311 6.728200 TGATTCATTCAAGGCATCGTTTATC 58.272 36.000 0.00 0.00 0.00 1.75
3112 3312 6.543465 TGATTCATTCAAGGCATCGTTTATCT 59.457 34.615 0.00 0.00 0.00 1.98
3113 3313 5.739752 TCATTCAAGGCATCGTTTATCTG 57.260 39.130 0.00 0.00 0.00 2.90
3114 3314 5.185454 TCATTCAAGGCATCGTTTATCTGT 58.815 37.500 0.00 0.00 0.00 3.41
3115 3315 6.345298 TCATTCAAGGCATCGTTTATCTGTA 58.655 36.000 0.00 0.00 0.00 2.74
3116 3316 6.992123 TCATTCAAGGCATCGTTTATCTGTAT 59.008 34.615 0.00 0.00 0.00 2.29
3117 3317 8.147704 TCATTCAAGGCATCGTTTATCTGTATA 58.852 33.333 0.00 0.00 0.00 1.47
3118 3318 8.939929 CATTCAAGGCATCGTTTATCTGTATAT 58.060 33.333 0.00 0.00 0.00 0.86
3120 3320 9.990360 TTCAAGGCATCGTTTATCTGTATATAA 57.010 29.630 0.00 0.00 0.00 0.98
3121 3321 9.990360 TCAAGGCATCGTTTATCTGTATATAAA 57.010 29.630 0.00 0.00 0.00 1.40
3124 3324 9.862371 AGGCATCGTTTATCTGTATATAAAGAG 57.138 33.333 8.59 0.00 33.19 2.85
3125 3325 9.856488 GGCATCGTTTATCTGTATATAAAGAGA 57.144 33.333 8.59 1.04 33.19 3.10
3148 3940 0.318784 AGAGTGGAGTTGCGAACGTC 60.319 55.000 0.00 0.00 36.23 4.34
3149 3941 0.596600 GAGTGGAGTTGCGAACGTCA 60.597 55.000 0.00 0.00 36.23 4.35
3150 3942 0.597637 AGTGGAGTTGCGAACGTCAG 60.598 55.000 0.00 0.00 36.23 3.51
3152 3944 1.006571 GGAGTTGCGAACGTCAGGA 60.007 57.895 0.00 0.00 36.23 3.86
3268 4714 5.386958 TCTATGTTTCACTCGCAACTACT 57.613 39.130 0.00 0.00 0.00 2.57
3269 4715 5.399858 TCTATGTTTCACTCGCAACTACTC 58.600 41.667 0.00 0.00 0.00 2.59
3270 4716 2.750948 TGTTTCACTCGCAACTACTCC 58.249 47.619 0.00 0.00 0.00 3.85
3271 4717 2.067013 GTTTCACTCGCAACTACTCCC 58.933 52.381 0.00 0.00 0.00 4.30
3272 4718 1.629043 TTCACTCGCAACTACTCCCT 58.371 50.000 0.00 0.00 0.00 4.20
3273 4719 1.174783 TCACTCGCAACTACTCCCTC 58.825 55.000 0.00 0.00 0.00 4.30
3274 4720 0.173708 CACTCGCAACTACTCCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
3275 4721 1.313812 ACTCGCAACTACTCCCTCCG 61.314 60.000 0.00 0.00 0.00 4.63
3276 4722 1.303888 TCGCAACTACTCCCTCCGT 60.304 57.895 0.00 0.00 0.00 4.69
3277 4723 0.896940 TCGCAACTACTCCCTCCGTT 60.897 55.000 0.00 0.00 0.00 4.44
3278 4724 0.458025 CGCAACTACTCCCTCCGTTC 60.458 60.000 0.00 0.00 0.00 3.95
3279 4725 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
3280 4726 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
3281 4727 2.731572 CAACTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
3282 4728 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3283 4729 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3284 4730 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3285 4731 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3286 4732 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3287 4733 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3288 4734 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3289 4735 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3290 4736 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3291 4737 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3292 4738 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3293 4739 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3294 4740 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3295 4741 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3296 4742 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3297 4743 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3298 4744 9.947433 TCCGTTCCTAAATATTTGTCTTTCTAA 57.053 29.630 11.05 0.00 0.00 2.10
3324 4770 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
3325 4771 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
3326 4772 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
3327 4773 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
3329 4775 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
3330 4776 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
3369 4815 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
3370 4816 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
3371 4817 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
3372 4818 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
3373 4819 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
3374 4820 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
3375 4821 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
3376 4822 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
3377 4823 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
3378 4824 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
3379 4825 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
3380 4826 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
3381 4827 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
3382 4828 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
3383 4829 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
3384 4830 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
3385 4831 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
3386 4832 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
3387 4833 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
3388 4834 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
3389 4835 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
3390 4836 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
3391 4837 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
3392 4838 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
3393 4839 6.367695 TCCGTATGTAGTCACTTGTTGAAATG 59.632 38.462 0.00 0.00 35.39 2.32
3394 4840 6.367695 CCGTATGTAGTCACTTGTTGAAATGA 59.632 38.462 0.00 0.00 35.39 2.57
3395 4841 7.227461 CGTATGTAGTCACTTGTTGAAATGAC 58.773 38.462 0.00 0.00 41.47 3.06
3403 4849 8.142994 GTCACTTGTTGAAATGACTAGAAAGA 57.857 34.615 0.00 0.00 38.72 2.52
3404 4850 8.064814 GTCACTTGTTGAAATGACTAGAAAGAC 58.935 37.037 0.00 0.00 38.72 3.01
3405 4851 7.768582 TCACTTGTTGAAATGACTAGAAAGACA 59.231 33.333 0.00 0.00 0.00 3.41
3406 4852 8.397906 CACTTGTTGAAATGACTAGAAAGACAA 58.602 33.333 0.00 0.00 31.23 3.18
3407 4853 8.616076 ACTTGTTGAAATGACTAGAAAGACAAG 58.384 33.333 0.00 0.00 43.36 3.16
3408 4854 8.506168 TTGTTGAAATGACTAGAAAGACAAGT 57.494 30.769 0.00 0.00 31.23 3.16
3409 4855 9.607988 TTGTTGAAATGACTAGAAAGACAAGTA 57.392 29.630 0.00 0.00 31.23 2.24
3410 4856 9.778741 TGTTGAAATGACTAGAAAGACAAGTAT 57.221 29.630 0.00 0.00 31.23 2.12
3418 4864 9.924650 TGACTAGAAAGACAAGTATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3419 4865 8.983307 ACTAGAAAGACAAGTATTTAGGAACG 57.017 34.615 0.00 0.00 0.00 3.95
3420 4866 8.033626 ACTAGAAAGACAAGTATTTAGGAACGG 58.966 37.037 0.00 0.00 0.00 4.44
3421 4867 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
3422 4868 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
3423 4869 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3424 4870 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3425 4871 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3426 4872 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3427 4873 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
3428 4874 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
3429 4875 4.892345 AGTATTTAGGAACGGAGGGAGTAC 59.108 45.833 0.00 0.00 0.00 2.73
3547 4993 2.586648 TTGCTTCCCTTTCCTCCTTC 57.413 50.000 0.00 0.00 0.00 3.46
3566 5012 3.251479 TCTGTATGTTGCAGAAGCGAT 57.749 42.857 0.00 0.00 46.23 4.58
3681 5135 7.466804 TGATACATTGTTTAAGAGGAAGGGTT 58.533 34.615 0.00 0.00 0.00 4.11
3712 5166 3.509442 TCAATGGCTCCTCAAACCAATT 58.491 40.909 0.00 0.00 36.94 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.910688 TCAGCCGACAAAGAAGAGTT 57.089 45.000 0.00 0.00 0.00 3.01
1 2 2.300152 TCATCAGCCGACAAAGAAGAGT 59.700 45.455 0.00 0.00 0.00 3.24
2 3 2.964740 TCATCAGCCGACAAAGAAGAG 58.035 47.619 0.00 0.00 0.00 2.85
3 4 3.401033 TTCATCAGCCGACAAAGAAGA 57.599 42.857 0.00 0.00 0.00 2.87
4 5 4.488126 TTTTCATCAGCCGACAAAGAAG 57.512 40.909 0.00 0.00 0.00 2.85
5 6 4.338118 ACTTTTTCATCAGCCGACAAAGAA 59.662 37.500 5.96 0.00 34.98 2.52
6 7 3.882888 ACTTTTTCATCAGCCGACAAAGA 59.117 39.130 5.96 0.00 34.98 2.52
7 8 4.228912 ACTTTTTCATCAGCCGACAAAG 57.771 40.909 0.00 0.00 36.61 2.77
8 9 4.647424 AACTTTTTCATCAGCCGACAAA 57.353 36.364 0.00 0.00 0.00 2.83
9 10 4.338118 AGAAACTTTTTCATCAGCCGACAA 59.662 37.500 1.72 0.00 0.00 3.18
10 11 3.882888 AGAAACTTTTTCATCAGCCGACA 59.117 39.130 1.72 0.00 0.00 4.35
11 12 4.222114 CAGAAACTTTTTCATCAGCCGAC 58.778 43.478 1.72 0.00 0.00 4.79
12 13 3.253188 CCAGAAACTTTTTCATCAGCCGA 59.747 43.478 1.72 0.00 0.00 5.54
13 14 3.004734 ACCAGAAACTTTTTCATCAGCCG 59.995 43.478 1.72 0.00 0.00 5.52
14 15 4.590850 ACCAGAAACTTTTTCATCAGCC 57.409 40.909 1.72 0.00 0.00 4.85
15 16 6.238184 CCAAAACCAGAAACTTTTTCATCAGC 60.238 38.462 1.72 0.00 0.00 4.26
16 17 6.258507 CCCAAAACCAGAAACTTTTTCATCAG 59.741 38.462 1.72 0.00 0.00 2.90
17 18 6.112058 CCCAAAACCAGAAACTTTTTCATCA 58.888 36.000 1.72 0.00 0.00 3.07
18 19 5.007626 GCCCAAAACCAGAAACTTTTTCATC 59.992 40.000 1.72 0.00 0.00 2.92
19 20 4.881273 GCCCAAAACCAGAAACTTTTTCAT 59.119 37.500 1.72 0.00 0.00 2.57
20 21 4.257731 GCCCAAAACCAGAAACTTTTTCA 58.742 39.130 1.72 0.00 0.00 2.69
21 22 3.308595 CGCCCAAAACCAGAAACTTTTTC 59.691 43.478 0.00 0.00 0.00 2.29
22 23 3.266636 CGCCCAAAACCAGAAACTTTTT 58.733 40.909 0.00 0.00 0.00 1.94
23 24 2.419436 CCGCCCAAAACCAGAAACTTTT 60.419 45.455 0.00 0.00 0.00 2.27
24 25 1.138069 CCGCCCAAAACCAGAAACTTT 59.862 47.619 0.00 0.00 0.00 2.66
25 26 0.750249 CCGCCCAAAACCAGAAACTT 59.250 50.000 0.00 0.00 0.00 2.66
26 27 0.396556 ACCGCCCAAAACCAGAAACT 60.397 50.000 0.00 0.00 0.00 2.66
27 28 0.249280 CACCGCCCAAAACCAGAAAC 60.249 55.000 0.00 0.00 0.00 2.78
28 29 0.684805 ACACCGCCCAAAACCAGAAA 60.685 50.000 0.00 0.00 0.00 2.52
29 30 1.076632 ACACCGCCCAAAACCAGAA 60.077 52.632 0.00 0.00 0.00 3.02
30 31 1.527380 GACACCGCCCAAAACCAGA 60.527 57.895 0.00 0.00 0.00 3.86
31 32 1.826054 TGACACCGCCCAAAACCAG 60.826 57.895 0.00 0.00 0.00 4.00
32 33 2.122167 GTGACACCGCCCAAAACCA 61.122 57.895 0.00 0.00 0.00 3.67
33 34 2.725641 GTGACACCGCCCAAAACC 59.274 61.111 0.00 0.00 0.00 3.27
34 35 1.716826 TTCGTGACACCGCCCAAAAC 61.717 55.000 0.00 0.00 0.00 2.43
35 36 1.030488 TTTCGTGACACCGCCCAAAA 61.030 50.000 0.00 0.00 0.00 2.44
36 37 1.440938 CTTTCGTGACACCGCCCAAA 61.441 55.000 0.00 0.00 0.00 3.28
37 38 1.890041 CTTTCGTGACACCGCCCAA 60.890 57.895 0.00 0.00 0.00 4.12
38 39 2.280524 CTTTCGTGACACCGCCCA 60.281 61.111 0.00 0.00 0.00 5.36
39 40 2.027625 CTCTTTCGTGACACCGCCC 61.028 63.158 0.00 0.00 0.00 6.13
40 41 0.599204 TTCTCTTTCGTGACACCGCC 60.599 55.000 0.00 0.00 0.00 6.13
41 42 1.126846 CATTCTCTTTCGTGACACCGC 59.873 52.381 0.00 0.00 0.00 5.68
42 43 1.126846 GCATTCTCTTTCGTGACACCG 59.873 52.381 0.00 0.00 0.00 4.94
43 44 1.464997 GGCATTCTCTTTCGTGACACC 59.535 52.381 0.00 0.00 0.00 4.16
44 45 1.126846 CGGCATTCTCTTTCGTGACAC 59.873 52.381 0.00 0.00 0.00 3.67
45 46 1.428448 CGGCATTCTCTTTCGTGACA 58.572 50.000 0.00 0.00 0.00 3.58
46 47 0.095417 GCGGCATTCTCTTTCGTGAC 59.905 55.000 0.00 0.00 0.00 3.67
47 48 0.320334 TGCGGCATTCTCTTTCGTGA 60.320 50.000 0.00 0.00 0.00 4.35
48 49 0.516877 TTGCGGCATTCTCTTTCGTG 59.483 50.000 2.28 0.00 0.00 4.35
49 50 0.517316 GTTGCGGCATTCTCTTTCGT 59.483 50.000 2.28 0.00 0.00 3.85
50 51 0.516877 TGTTGCGGCATTCTCTTTCG 59.483 50.000 2.28 0.00 0.00 3.46
51 52 1.537202 ACTGTTGCGGCATTCTCTTTC 59.463 47.619 2.28 0.00 0.00 2.62
52 53 1.609208 ACTGTTGCGGCATTCTCTTT 58.391 45.000 2.28 0.00 0.00 2.52
53 54 1.609208 AACTGTTGCGGCATTCTCTT 58.391 45.000 2.28 0.00 0.00 2.85
54 55 1.609208 AAACTGTTGCGGCATTCTCT 58.391 45.000 2.28 0.00 0.00 3.10
339 340 5.754890 GTGTGAGCTTCAACCAAATTCAATT 59.245 36.000 0.00 0.00 0.00 2.32
399 400 7.728847 TCAGTTGTAGAAACTAGTACGTACA 57.271 36.000 26.55 12.17 0.00 2.90
433 435 1.529865 GTGCTAAAAGGCGTCGTTTCT 59.470 47.619 3.70 0.00 34.52 2.52
464 466 9.823647 CATATTTTGCTCTCTCCTAAGTTTCTA 57.176 33.333 0.00 0.00 0.00 2.10
481 483 7.648112 TGTCAGACGATCTACTACATATTTTGC 59.352 37.037 0.00 0.00 0.00 3.68
499 501 1.389853 CGACTATGCGATGTCAGACG 58.610 55.000 0.00 0.00 33.18 4.18
502 504 1.600663 GGTCCGACTATGCGATGTCAG 60.601 57.143 0.00 0.00 33.18 3.51
509 511 2.353607 GCTCGGTCCGACTATGCG 60.354 66.667 10.71 0.13 0.00 4.73
511 513 2.353607 GCGCTCGGTCCGACTATG 60.354 66.667 10.71 1.37 0.00 2.23
570 576 0.861837 GGCGCACTAAATCCTCGATG 59.138 55.000 10.83 0.00 0.00 3.84
614 620 8.911247 ATCAGCCGTTTGATTAGTTTTATTTC 57.089 30.769 0.00 0.00 34.17 2.17
651 800 3.614630 CGTTATCCGGTTATAATCCCGCA 60.615 47.826 0.00 0.00 42.87 5.69
777 926 0.519175 CGTTTGCGTGTGAGCTATGC 60.519 55.000 0.00 0.00 38.13 3.14
785 934 1.654137 GCTGGTTCGTTTGCGTGTG 60.654 57.895 0.00 0.00 39.49 3.82
852 1012 1.528542 GGGCGGCTTTTATCCCCTC 60.529 63.158 9.56 0.00 32.60 4.30
913 1074 1.602237 GGTGGCTTGGCTACTGCTA 59.398 57.895 6.04 0.00 39.93 3.49
914 1075 2.352805 GGTGGCTTGGCTACTGCT 59.647 61.111 6.04 0.00 39.93 4.24
1108 1275 1.059913 AGTGGTTGAGTTGGAGAGGG 58.940 55.000 0.00 0.00 0.00 4.30
1161 1328 4.217550 TCAAGAAACCAACCGGAAATCATC 59.782 41.667 9.46 0.00 35.59 2.92
1163 1330 3.556999 TCAAGAAACCAACCGGAAATCA 58.443 40.909 9.46 0.00 35.59 2.57
1232 1399 8.141268 TGTTTATTCTTTCATTTCAGGAACACC 58.859 33.333 0.00 0.00 0.00 4.16
1276 1447 2.607038 GGACCAATGACCTGCGTTTTTC 60.607 50.000 0.00 0.00 0.00 2.29
1314 1485 1.485124 ACATGCATCTAGACGTCCCA 58.515 50.000 13.01 0.00 0.00 4.37
1393 1564 5.419760 AGAAAAACAACTTTCCTAGCGAC 57.580 39.130 0.00 0.00 36.18 5.19
1419 1590 6.927416 ACCAACACATATCGTTACTAAGACA 58.073 36.000 0.00 0.00 0.00 3.41
1420 1591 7.823149 AACCAACACATATCGTTACTAAGAC 57.177 36.000 0.00 0.00 0.00 3.01
1430 1601 9.663904 CAAATAAGGAATAACCAACACATATCG 57.336 33.333 0.00 0.00 42.04 2.92
1438 1609 7.484959 CGAAGAAGCAAATAAGGAATAACCAAC 59.515 37.037 0.00 0.00 42.04 3.77
1443 1622 5.885912 AGGCGAAGAAGCAAATAAGGAATAA 59.114 36.000 0.00 0.00 39.27 1.40
1460 1639 4.766375 TCTTTGTATCCCTTTAGGCGAAG 58.234 43.478 0.00 0.00 34.51 3.79
1527 1706 7.942341 TCCTCTAAAAAGAAAGGCAGATAAACA 59.058 33.333 0.00 0.00 0.00 2.83
1528 1707 8.336801 TCCTCTAAAAAGAAAGGCAGATAAAC 57.663 34.615 0.00 0.00 0.00 2.01
1529 1708 8.934023 TTCCTCTAAAAAGAAAGGCAGATAAA 57.066 30.769 0.00 0.00 0.00 1.40
1530 1709 8.934023 TTTCCTCTAAAAAGAAAGGCAGATAA 57.066 30.769 0.00 0.00 0.00 1.75
1531 1710 8.934023 TTTTCCTCTAAAAAGAAAGGCAGATA 57.066 30.769 0.00 0.00 34.11 1.98
1532 1711 7.839680 TTTTCCTCTAAAAAGAAAGGCAGAT 57.160 32.000 0.00 0.00 34.11 2.90
1533 1712 7.839680 ATTTTCCTCTAAAAAGAAAGGCAGA 57.160 32.000 0.00 0.00 40.37 4.26
1534 1713 8.768019 CAAATTTTCCTCTAAAAAGAAAGGCAG 58.232 33.333 0.00 0.00 40.37 4.85
1535 1714 8.264347 ACAAATTTTCCTCTAAAAAGAAAGGCA 58.736 29.630 0.00 0.00 40.37 4.75
1536 1715 8.662781 ACAAATTTTCCTCTAAAAAGAAAGGC 57.337 30.769 0.00 0.00 40.37 4.35
1546 1725 8.726988 CCGACAGATAAACAAATTTTCCTCTAA 58.273 33.333 0.00 0.00 0.00 2.10
1547 1726 7.881232 ACCGACAGATAAACAAATTTTCCTCTA 59.119 33.333 0.00 0.00 0.00 2.43
1548 1727 6.715264 ACCGACAGATAAACAAATTTTCCTCT 59.285 34.615 0.00 0.00 0.00 3.69
1549 1728 6.909909 ACCGACAGATAAACAAATTTTCCTC 58.090 36.000 0.00 0.00 0.00 3.71
1550 1729 6.894339 ACCGACAGATAAACAAATTTTCCT 57.106 33.333 0.00 0.00 0.00 3.36
1551 1730 7.586747 TGTACCGACAGATAAACAAATTTTCC 58.413 34.615 0.00 0.00 0.00 3.13
1552 1731 9.453325 TTTGTACCGACAGATAAACAAATTTTC 57.547 29.630 0.00 0.00 36.76 2.29
1553 1732 9.458374 CTTTGTACCGACAGATAAACAAATTTT 57.542 29.630 0.00 0.00 36.55 1.82
1561 1740 6.070995 ACCAGATCTTTGTACCGACAGATAAA 60.071 38.462 0.00 0.00 36.76 1.40
1565 1744 3.056821 CACCAGATCTTTGTACCGACAGA 60.057 47.826 0.00 0.00 36.76 3.41
1570 1749 2.012051 GCCCACCAGATCTTTGTACCG 61.012 57.143 0.00 0.00 0.00 4.02
1588 1767 4.081642 TCTGGACTGTATTGTACTTCTGCC 60.082 45.833 0.00 0.00 0.00 4.85
1589 1768 5.073311 TCTGGACTGTATTGTACTTCTGC 57.927 43.478 0.00 0.00 0.00 4.26
1729 1908 4.323417 TCCATATCACACCTTGTTCACAC 58.677 43.478 0.00 0.00 0.00 3.82
1760 1939 0.036306 TGAACTTTCGGCCTCTTCCC 59.964 55.000 0.00 0.00 0.00 3.97
1779 1958 5.416271 TTTCTTCTAATAACAGACGGGCT 57.584 39.130 0.00 0.00 0.00 5.19
1780 1959 6.509677 CGATTTTCTTCTAATAACAGACGGGC 60.510 42.308 0.00 0.00 0.00 6.13
1814 1993 0.988832 TTGGTCTGTATGGTGGGGAC 59.011 55.000 0.00 0.00 0.00 4.46
1821 2000 5.491070 TCTCATGTTCTTTGGTCTGTATGG 58.509 41.667 0.00 0.00 0.00 2.74
1825 2004 6.094603 GCATTATCTCATGTTCTTTGGTCTGT 59.905 38.462 0.00 0.00 0.00 3.41
1838 2017 7.389884 ACCTAGCAATACAAGCATTATCTCATG 59.610 37.037 0.00 0.00 0.00 3.07
1840 2019 6.830912 ACCTAGCAATACAAGCATTATCTCA 58.169 36.000 0.00 0.00 0.00 3.27
1846 2025 7.125792 AGTACTACCTAGCAATACAAGCATT 57.874 36.000 0.00 0.00 0.00 3.56
1855 2034 7.556996 CCGGAGATAATAGTACTACCTAGCAAT 59.443 40.741 4.31 0.00 0.00 3.56
1856 2035 6.883217 CCGGAGATAATAGTACTACCTAGCAA 59.117 42.308 4.31 0.00 0.00 3.91
1867 2046 8.185506 TGCACTTAATTCCGGAGATAATAGTA 57.814 34.615 3.34 1.38 0.00 1.82
1868 2047 7.062749 TGCACTTAATTCCGGAGATAATAGT 57.937 36.000 3.34 2.25 0.00 2.12
1869 2048 7.155328 ACTGCACTTAATTCCGGAGATAATAG 58.845 38.462 3.34 1.59 0.00 1.73
1902 2081 0.747255 CACAACGAGATCCCGGAGAT 59.253 55.000 0.73 3.62 38.17 2.75
1975 2154 0.459237 GTAGCTCATCACAGCACGCT 60.459 55.000 0.00 0.00 42.40 5.07
1991 2170 3.628005 CAAACCATGCCATGCGTAG 57.372 52.632 0.00 0.00 0.00 3.51
2032 2211 0.322546 AAAGCCTCCACGAATCCCAC 60.323 55.000 0.00 0.00 0.00 4.61
2076 2255 4.300803 TGTGCTTCATGTGAAATTCTTGC 58.699 39.130 0.00 0.00 33.07 4.01
2083 2262 3.812609 ACGTGTATGTGCTTCATGTGAAA 59.187 39.130 0.00 0.00 37.91 2.69
2094 2273 3.602062 CGAATTTTCCAACGTGTATGTGC 59.398 43.478 0.00 0.00 0.00 4.57
2097 2276 5.451023 GCATACGAATTTTCCAACGTGTATG 59.549 40.000 9.66 9.66 40.33 2.39
2106 2285 4.520874 TGTTTGGAGCATACGAATTTTCCA 59.479 37.500 0.00 0.00 33.17 3.53
2143 2325 7.966339 AAGGAAAAATCTGATGGATGATCAA 57.034 32.000 0.00 0.00 40.73 2.57
2164 2346 5.011023 AGTGGTCCTAAAGATTGCAAAAAGG 59.989 40.000 1.71 6.41 0.00 3.11
2175 2357 3.964411 TCGATCTGAGTGGTCCTAAAGA 58.036 45.455 0.00 0.00 0.00 2.52
2273 2455 2.496070 TGGACGGACAGAGACAAATAGG 59.504 50.000 0.00 0.00 0.00 2.57
2314 2496 5.707298 CCTACTGATGAAAAGTCACCACAAT 59.293 40.000 0.00 0.00 36.31 2.71
2323 2505 4.384647 GCTCCATCCCTACTGATGAAAAGT 60.385 45.833 2.70 0.00 43.94 2.66
2365 2549 8.715998 CAAAAGTATGTATTGCTATCTAGGCTG 58.284 37.037 0.00 0.00 0.00 4.85
2453 2649 4.000988 ACAAGTTTCAGACGTGTTCTTGT 58.999 39.130 12.85 12.85 46.66 3.16
2454 2650 4.600012 ACAAGTTTCAGACGTGTTCTTG 57.400 40.909 0.00 4.06 46.66 3.02
2463 2662 7.278868 TCTCTTCTTTTGAGACAAGTTTCAGAC 59.721 37.037 0.00 0.00 35.86 3.51
2685 2884 3.818787 CAAGCGGCTGGACCATGC 61.819 66.667 1.81 0.60 39.03 4.06
2686 2885 2.360350 ACAAGCGGCTGGACCATG 60.360 61.111 12.25 3.27 39.03 3.66
2687 2886 2.045926 GACAAGCGGCTGGACCAT 60.046 61.111 12.25 0.00 39.03 3.55
2715 2914 4.671590 TGTCCTCGGTCAGGCGGA 62.672 66.667 0.00 0.00 43.08 5.54
2716 2915 4.135153 CTGTCCTCGGTCAGGCGG 62.135 72.222 2.76 0.00 43.08 6.13
2717 2916 4.803426 GCTGTCCTCGGTCAGGCG 62.803 72.222 11.24 0.00 43.08 5.52
2730 2929 3.257127 GGTCTTCTTCTCTACTGTGCTGT 59.743 47.826 0.00 0.00 0.00 4.40
2777 2977 3.660865 ACTAACATGGTGACGTTCTTCC 58.339 45.455 0.00 0.00 0.00 3.46
2782 2982 6.316890 ACTTGTAAAACTAACATGGTGACGTT 59.683 34.615 0.00 0.00 0.00 3.99
2830 3030 1.506025 AGAAGAAGAGCAGGGGGATC 58.494 55.000 0.00 0.00 0.00 3.36
3010 3210 2.737252 AGTCTCGATTTCTTCCAAACGC 59.263 45.455 0.00 0.00 0.00 4.84
3067 3267 4.873817 TCAACAATGATGCAAAAGAGGTG 58.126 39.130 0.00 0.00 0.00 4.00
3098 3298 9.862371 CTCTTTATATACAGATAAACGATGCCT 57.138 33.333 0.00 0.00 30.09 4.75
3110 3310 9.922477 TCCACTCTCTTTCTCTTTATATACAGA 57.078 33.333 0.00 0.00 0.00 3.41
3112 3312 9.702253 ACTCCACTCTCTTTCTCTTTATATACA 57.298 33.333 0.00 0.00 0.00 2.29
3115 3315 7.984617 GCAACTCCACTCTCTTTCTCTTTATAT 59.015 37.037 0.00 0.00 0.00 0.86
3116 3316 7.324178 GCAACTCCACTCTCTTTCTCTTTATA 58.676 38.462 0.00 0.00 0.00 0.98
3117 3317 6.169800 GCAACTCCACTCTCTTTCTCTTTAT 58.830 40.000 0.00 0.00 0.00 1.40
3118 3318 5.542779 GCAACTCCACTCTCTTTCTCTTTA 58.457 41.667 0.00 0.00 0.00 1.85
3119 3319 4.384940 GCAACTCCACTCTCTTTCTCTTT 58.615 43.478 0.00 0.00 0.00 2.52
3120 3320 3.553922 CGCAACTCCACTCTCTTTCTCTT 60.554 47.826 0.00 0.00 0.00 2.85
3121 3321 2.029470 CGCAACTCCACTCTCTTTCTCT 60.029 50.000 0.00 0.00 0.00 3.10
3122 3322 2.029828 TCGCAACTCCACTCTCTTTCTC 60.030 50.000 0.00 0.00 0.00 2.87
3123 3323 1.964223 TCGCAACTCCACTCTCTTTCT 59.036 47.619 0.00 0.00 0.00 2.52
3124 3324 2.440539 TCGCAACTCCACTCTCTTTC 57.559 50.000 0.00 0.00 0.00 2.62
3125 3325 2.484889 GTTCGCAACTCCACTCTCTTT 58.515 47.619 0.00 0.00 0.00 2.52
3126 3326 1.603172 CGTTCGCAACTCCACTCTCTT 60.603 52.381 0.00 0.00 0.00 2.85
3127 3327 0.039074 CGTTCGCAACTCCACTCTCT 60.039 55.000 0.00 0.00 0.00 3.10
3128 3328 0.318784 ACGTTCGCAACTCCACTCTC 60.319 55.000 0.00 0.00 0.00 3.20
3129 3329 0.318784 GACGTTCGCAACTCCACTCT 60.319 55.000 0.00 0.00 0.00 3.24
3130 3330 0.596600 TGACGTTCGCAACTCCACTC 60.597 55.000 0.00 0.00 0.00 3.51
3131 3331 0.597637 CTGACGTTCGCAACTCCACT 60.598 55.000 0.00 0.00 0.00 4.00
3132 3332 1.557443 CCTGACGTTCGCAACTCCAC 61.557 60.000 0.00 0.00 0.00 4.02
3133 3333 1.300620 CCTGACGTTCGCAACTCCA 60.301 57.895 0.00 0.00 0.00 3.86
3235 4681 4.710375 AGTGAAACATAGATCGGTACCAGT 59.290 41.667 13.54 0.00 41.43 4.00
3236 4682 5.263968 AGTGAAACATAGATCGGTACCAG 57.736 43.478 13.54 5.03 41.43 4.00
3237 4683 4.201980 CGAGTGAAACATAGATCGGTACCA 60.202 45.833 13.54 0.00 41.43 3.25
3268 4714 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3269 4715 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3270 4716 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3271 4717 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3272 4718 9.947433 TTAGAAAGACAAATATTTAGGAACGGA 57.053 29.630 0.00 0.00 0.00 4.69
3298 4744 8.879759 CCGTATGTAGTAGTCATTTGAAATGTT 58.120 33.333 16.62 9.61 0.00 2.71
3299 4745 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
3300 4746 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
3301 4747 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
3302 4748 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
3303 4749 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
3304 4750 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
3347 4793 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
3348 4794 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
3349 4795 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
3350 4796 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
3351 4797 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
3352 4798 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
3353 4799 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
3354 4800 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
3355 4801 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
3356 4802 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
3357 4803 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
3358 4804 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
3359 4805 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
3360 4806 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
3361 4807 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
3362 4808 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
3363 4809 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
3364 4810 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
3365 4811 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
3366 4812 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
3367 4813 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
3368 4814 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
3369 4815 6.367695 TCATTTCAACAAGTGACTACATACGG 59.632 38.462 0.00 0.00 35.39 4.02
3370 4816 7.227461 GTCATTTCAACAAGTGACTACATACG 58.773 38.462 3.77 0.00 42.95 3.06
3378 4824 8.064814 GTCTTTCTAGTCATTTCAACAAGTGAC 58.935 37.037 2.95 2.95 45.33 3.67
3379 4825 7.768582 TGTCTTTCTAGTCATTTCAACAAGTGA 59.231 33.333 0.00 0.00 0.00 3.41
3380 4826 7.919690 TGTCTTTCTAGTCATTTCAACAAGTG 58.080 34.615 0.00 0.00 0.00 3.16
3381 4827 8.506168 TTGTCTTTCTAGTCATTTCAACAAGT 57.494 30.769 0.00 0.00 0.00 3.16
3382 4828 8.616076 ACTTGTCTTTCTAGTCATTTCAACAAG 58.384 33.333 0.00 0.00 43.26 3.16
3383 4829 8.506168 ACTTGTCTTTCTAGTCATTTCAACAA 57.494 30.769 0.00 0.00 0.00 2.83
3384 4830 9.778741 ATACTTGTCTTTCTAGTCATTTCAACA 57.221 29.630 0.00 0.00 34.37 3.33
3392 4838 9.924650 GTTCCTAAATACTTGTCTTTCTAGTCA 57.075 33.333 0.00 0.00 34.37 3.41
3393 4839 9.074443 CGTTCCTAAATACTTGTCTTTCTAGTC 57.926 37.037 0.00 0.00 34.37 2.59
3394 4840 8.033626 CCGTTCCTAAATACTTGTCTTTCTAGT 58.966 37.037 0.00 0.00 36.28 2.57
3395 4841 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
3396 4842 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
3397 4843 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
3398 4844 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
3399 4845 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3400 4846 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3401 4847 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
3402 4848 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
3403 4849 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
3404 4850 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
3405 4851 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
3406 4852 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
3407 4853 4.646492 TGTACTCCCTCCGTTCCTAAATAC 59.354 45.833 0.00 0.00 0.00 1.89
3408 4854 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
3409 4855 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
3410 4856 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
3411 4857 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
3412 4858 2.309755 TCTTGTACTCCCTCCGTTCCTA 59.690 50.000 0.00 0.00 0.00 2.94
3413 4859 1.076677 TCTTGTACTCCCTCCGTTCCT 59.923 52.381 0.00 0.00 0.00 3.36
3414 4860 1.553706 TCTTGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
3415 4861 3.889520 AATCTTGTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
3416 4862 6.371278 TCTATAATCTTGTACTCCCTCCGTT 58.629 40.000 0.00 0.00 0.00 4.44
3417 4863 5.950023 TCTATAATCTTGTACTCCCTCCGT 58.050 41.667 0.00 0.00 0.00 4.69
3418 4864 5.416326 CCTCTATAATCTTGTACTCCCTCCG 59.584 48.000 0.00 0.00 0.00 4.63
3419 4865 6.316513 ACCTCTATAATCTTGTACTCCCTCC 58.683 44.000 0.00 0.00 0.00 4.30
3420 4866 8.937207 TTACCTCTATAATCTTGTACTCCCTC 57.063 38.462 0.00 0.00 0.00 4.30
3421 4867 9.900112 AATTACCTCTATAATCTTGTACTCCCT 57.100 33.333 0.00 0.00 0.00 4.20
3422 4868 9.930693 CAATTACCTCTATAATCTTGTACTCCC 57.069 37.037 0.00 0.00 0.00 4.30
3429 4875 9.202273 GCTCTCACAATTACCTCTATAATCTTG 57.798 37.037 0.00 0.00 0.00 3.02
3474 4920 2.933769 GCTCATTGCTTACTGCGTTTT 58.066 42.857 0.00 0.00 46.63 2.43
3547 4993 3.060940 CGTATCGCTTCTGCAACATACAG 60.061 47.826 0.00 0.00 39.64 2.74
3566 5012 5.856156 TGGGTCAATCTAAAACTCAACGTA 58.144 37.500 0.00 0.00 0.00 3.57
3681 5135 5.018149 TGAGGAGCCATTGAATGAAATTGA 58.982 37.500 6.76 0.00 36.07 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.