Multiple sequence alignment - TraesCS7A01G319500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G319500 chr7A 100.000 8219 0 0 1 8219 460109371 460117589 0.000000e+00 15178
1 TraesCS7A01G319500 chr7A 99.643 280 1 0 42 321 580227041 580227320 5.690000e-141 512
2 TraesCS7A01G319500 chr7A 99.293 283 2 0 38 320 643599815 643599533 5.690000e-141 512
3 TraesCS7A01G319500 chr7A 98.611 288 3 1 37 323 46297066 46297353 7.360000e-140 508
4 TraesCS7A01G319500 chr7B 94.496 4724 173 31 3534 8219 411745435 411750109 0.000000e+00 7203
5 TraesCS7A01G319500 chr7B 95.742 2748 63 16 317 3025 411741980 411744712 0.000000e+00 4377
6 TraesCS7A01G319500 chr7B 94.776 536 11 4 3007 3537 411744754 411745277 0.000000e+00 819
7 TraesCS7A01G319500 chr7B 99.643 280 1 0 42 321 388157452 388157173 5.690000e-141 512
8 TraesCS7A01G319500 chr7B 98.955 287 2 1 38 323 500771520 500771806 5.690000e-141 512
9 TraesCS7A01G319500 chr7D 96.305 3924 73 13 317 4196 402141997 402145892 0.000000e+00 6377
10 TraesCS7A01G319500 chr7D 95.165 3992 109 25 4271 8219 402145893 402149843 0.000000e+00 6226
11 TraesCS7A01G319500 chr7D 88.220 1146 98 15 4169 5294 383984239 383983111 0.000000e+00 1334
12 TraesCS7A01G319500 chr3B 87.467 1149 104 18 4169 5294 16695381 16694250 0.000000e+00 1288
13 TraesCS7A01G319500 chr3B 87.325 1144 104 15 4168 5287 78632382 78631256 0.000000e+00 1271
14 TraesCS7A01G319500 chr2D 87.478 1142 106 16 4171 5292 317863466 317862342 0.000000e+00 1282
15 TraesCS7A01G319500 chr1B 87.281 1140 111 14 4166 5288 50017317 50018439 0.000000e+00 1271
16 TraesCS7A01G319500 chr1B 99.643 280 1 0 42 321 373149481 373149760 5.690000e-141 512
17 TraesCS7A01G319500 chr3D 86.957 1150 90 21 4172 5292 597283855 597284973 0.000000e+00 1238
18 TraesCS7A01G319500 chr3D 76.923 481 85 19 4828 5294 610371539 610371071 4.930000e-62 250
19 TraesCS7A01G319500 chr2A 90.551 889 70 5 4406 5292 605245726 605244850 0.000000e+00 1164
20 TraesCS7A01G319500 chr2A 89.242 567 51 5 4171 4734 22445822 22445263 0.000000e+00 701
21 TraesCS7A01G319500 chr2A 99.645 282 1 0 40 321 773800399 773800680 4.400000e-142 516
22 TraesCS7A01G319500 chrUn 100.000 412 0 0 2283 2694 477531839 477532250 0.000000e+00 761
23 TraesCS7A01G319500 chr1D 84.879 701 64 15 4610 5291 470415556 470416233 0.000000e+00 669
24 TraesCS7A01G319500 chr6B 88.571 490 42 8 4170 4654 670031309 670031789 4.280000e-162 582
25 TraesCS7A01G319500 chr6B 99.643 280 1 0 42 321 680301075 680300796 5.690000e-141 512
26 TraesCS7A01G319500 chr5B 87.056 479 45 8 4168 4645 304294576 304295038 7.310000e-145 525
27 TraesCS7A01G319500 chr5B 87.921 356 21 3 4943 5292 304295340 304295679 4.620000e-107 399
28 TraesCS7A01G319500 chr2B 99.643 280 1 0 42 321 81319070 81318791 5.690000e-141 512


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G319500 chr7A 460109371 460117589 8218 False 15178.0 15178 100.000000 1 8219 1 chr7A.!!$F2 8218
1 TraesCS7A01G319500 chr7B 411741980 411750109 8129 False 4133.0 7203 95.004667 317 8219 3 chr7B.!!$F2 7902
2 TraesCS7A01G319500 chr7D 402141997 402149843 7846 False 6301.5 6377 95.735000 317 8219 2 chr7D.!!$F1 7902
3 TraesCS7A01G319500 chr7D 383983111 383984239 1128 True 1334.0 1334 88.220000 4169 5294 1 chr7D.!!$R1 1125
4 TraesCS7A01G319500 chr3B 16694250 16695381 1131 True 1288.0 1288 87.467000 4169 5294 1 chr3B.!!$R1 1125
5 TraesCS7A01G319500 chr3B 78631256 78632382 1126 True 1271.0 1271 87.325000 4168 5287 1 chr3B.!!$R2 1119
6 TraesCS7A01G319500 chr2D 317862342 317863466 1124 True 1282.0 1282 87.478000 4171 5292 1 chr2D.!!$R1 1121
7 TraesCS7A01G319500 chr1B 50017317 50018439 1122 False 1271.0 1271 87.281000 4166 5288 1 chr1B.!!$F1 1122
8 TraesCS7A01G319500 chr3D 597283855 597284973 1118 False 1238.0 1238 86.957000 4172 5292 1 chr3D.!!$F1 1120
9 TraesCS7A01G319500 chr2A 605244850 605245726 876 True 1164.0 1164 90.551000 4406 5292 1 chr2A.!!$R2 886
10 TraesCS7A01G319500 chr2A 22445263 22445822 559 True 701.0 701 89.242000 4171 4734 1 chr2A.!!$R1 563
11 TraesCS7A01G319500 chr1D 470415556 470416233 677 False 669.0 669 84.879000 4610 5291 1 chr1D.!!$F1 681
12 TraesCS7A01G319500 chr5B 304294576 304295679 1103 False 462.0 525 87.488500 4168 5292 2 chr5B.!!$F1 1124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
52 53 0.035152 CACATGGCTAAGGCTGGTCA 60.035 55.000 0.00 0.0 38.73 4.02 F
61 62 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.0 0.00 4.81 F
584 620 0.323908 CACTCGGGAAGGAGAGAGGT 60.324 60.000 0.00 0.0 37.87 3.85 F
585 621 0.410270 ACTCGGGAAGGAGAGAGGTT 59.590 55.000 0.00 0.0 37.87 3.50 F
761 798 0.532862 CGGTTGCAGTTGTGGAGTCT 60.533 55.000 0.00 0.0 0.00 3.24 F
1763 1802 2.602257 TCTCAATATCGTGGTGCAGG 57.398 50.000 0.00 0.0 0.00 4.85 F
2901 2961 1.777272 ACTTCCCTCCTTCAGCTTTGT 59.223 47.619 0.00 0.0 0.00 2.83 F
3442 3568 3.368427 GCTAGTTGCTACAGGATGACACA 60.368 47.826 0.13 0.0 38.03 3.72 F
4608 4915 0.111253 CCTTCCTGCCATACCCATCC 59.889 60.000 0.00 0.0 0.00 3.51 F
4930 5268 0.321653 AGATCAGTTGTCGTTGGGGC 60.322 55.000 0.00 0.0 0.00 5.80 F
5944 6333 0.470341 GGCATACCAAGGGTCTCCTC 59.530 60.000 0.00 0.0 44.07 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1751 1790 2.851263 TTTTCTACCTGCACCACGAT 57.149 45.000 0.00 0.00 0.00 3.73 R
1784 1823 2.939756 GCTTTAAAGGACTAGGAGCTGC 59.060 50.000 16.78 0.00 0.00 5.25 R
2123 2182 2.694760 GCCAGGTGTAGCAGCAAGC 61.695 63.158 0.00 0.00 46.19 4.01 R
2694 2754 6.999272 TGCCCTTAAGTGTCATAAAGTTAACA 59.001 34.615 8.61 0.00 0.00 2.41 R
2819 2879 2.224426 TGGTTTGAAGATGGTAGCACGT 60.224 45.455 0.00 0.00 0.00 4.49 R
3791 4083 0.321122 GACTGGGAGCTCAAGTGTGG 60.321 60.000 22.06 5.53 0.00 4.17 R
3822 4114 0.825425 CGAGCTGAGCCTCATCCCTA 60.825 60.000 0.00 0.00 0.00 3.53 R
4778 5105 1.207089 TCACAGTCGACCATTGATCCC 59.793 52.381 13.01 0.00 0.00 3.85 R
5926 6315 1.139853 CTGAGGAGACCCTTGGTATGC 59.860 57.143 0.00 0.00 44.53 3.14 R
6349 6738 1.925255 AGAGGATCCATTGGAAAGCCA 59.075 47.619 15.82 0.00 38.15 4.75 R
7243 7632 0.101759 CCATTGCCGAAGCCATCAAG 59.898 55.000 0.00 0.00 38.69 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.993705 AAGTTTGACAGAACCATAGGGA 57.006 40.909 0.00 0.00 38.05 4.20
24 25 4.993705 AGTTTGACAGAACCATAGGGAA 57.006 40.909 0.00 0.00 38.05 3.97
25 26 5.520748 AGTTTGACAGAACCATAGGGAAT 57.479 39.130 0.00 0.00 38.05 3.01
26 27 5.501156 AGTTTGACAGAACCATAGGGAATC 58.499 41.667 0.00 0.00 38.05 2.52
27 28 5.014123 AGTTTGACAGAACCATAGGGAATCA 59.986 40.000 0.00 0.00 38.05 2.57
28 29 5.512942 TTGACAGAACCATAGGGAATCAA 57.487 39.130 0.00 0.00 38.05 2.57
29 30 5.512942 TGACAGAACCATAGGGAATCAAA 57.487 39.130 0.00 0.00 38.05 2.69
30 31 5.500234 TGACAGAACCATAGGGAATCAAAG 58.500 41.667 0.00 0.00 38.05 2.77
31 32 5.250543 TGACAGAACCATAGGGAATCAAAGA 59.749 40.000 0.00 0.00 38.05 2.52
32 33 6.069440 TGACAGAACCATAGGGAATCAAAGAT 60.069 38.462 0.00 0.00 38.05 2.40
33 34 6.360618 ACAGAACCATAGGGAATCAAAGATC 58.639 40.000 0.00 0.00 38.05 2.75
34 35 6.069440 ACAGAACCATAGGGAATCAAAGATCA 60.069 38.462 0.00 0.00 38.05 2.92
35 36 6.261826 CAGAACCATAGGGAATCAAAGATCAC 59.738 42.308 0.00 0.00 38.05 3.06
36 37 5.715439 ACCATAGGGAATCAAAGATCACA 57.285 39.130 0.00 0.00 38.05 3.58
37 38 6.271585 ACCATAGGGAATCAAAGATCACAT 57.728 37.500 0.00 0.00 38.05 3.21
38 39 6.066690 ACCATAGGGAATCAAAGATCACATG 58.933 40.000 0.00 0.00 38.05 3.21
39 40 5.475909 CCATAGGGAATCAAAGATCACATGG 59.524 44.000 0.00 0.00 35.59 3.66
40 41 3.294214 AGGGAATCAAAGATCACATGGC 58.706 45.455 0.00 0.00 0.00 4.40
41 42 3.053095 AGGGAATCAAAGATCACATGGCT 60.053 43.478 0.00 0.00 0.00 4.75
42 43 4.166725 AGGGAATCAAAGATCACATGGCTA 59.833 41.667 0.00 0.00 0.00 3.93
43 44 4.889409 GGGAATCAAAGATCACATGGCTAA 59.111 41.667 0.00 0.00 0.00 3.09
44 45 5.009410 GGGAATCAAAGATCACATGGCTAAG 59.991 44.000 0.00 0.00 0.00 2.18
45 46 5.009410 GGAATCAAAGATCACATGGCTAAGG 59.991 44.000 0.00 0.00 0.00 2.69
46 47 3.282021 TCAAAGATCACATGGCTAAGGC 58.718 45.455 0.00 0.00 37.82 4.35
47 48 3.054139 TCAAAGATCACATGGCTAAGGCT 60.054 43.478 0.00 0.00 38.73 4.58
48 49 2.634815 AGATCACATGGCTAAGGCTG 57.365 50.000 0.00 0.00 38.73 4.85
49 50 1.142465 AGATCACATGGCTAAGGCTGG 59.858 52.381 0.00 0.00 38.73 4.85
50 51 0.921896 ATCACATGGCTAAGGCTGGT 59.078 50.000 0.00 0.00 38.73 4.00
51 52 0.253044 TCACATGGCTAAGGCTGGTC 59.747 55.000 0.00 0.00 38.73 4.02
52 53 0.035152 CACATGGCTAAGGCTGGTCA 60.035 55.000 0.00 0.00 38.73 4.02
53 54 0.921896 ACATGGCTAAGGCTGGTCAT 59.078 50.000 0.00 2.60 38.73 3.06
54 55 2.126882 ACATGGCTAAGGCTGGTCATA 58.873 47.619 7.36 0.00 38.73 2.15
55 56 2.105477 ACATGGCTAAGGCTGGTCATAG 59.895 50.000 7.36 0.00 38.73 2.23
56 57 1.879575 TGGCTAAGGCTGGTCATAGT 58.120 50.000 0.00 0.00 38.73 2.12
57 58 1.486310 TGGCTAAGGCTGGTCATAGTG 59.514 52.381 0.00 0.00 38.73 2.74
58 59 1.202698 GGCTAAGGCTGGTCATAGTGG 60.203 57.143 0.00 0.00 38.73 4.00
59 60 1.202698 GCTAAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
60 61 1.417890 CTAAGGCTGGTCATAGTGGGG 59.582 57.143 0.00 0.00 0.00 4.96
61 62 0.253160 AAGGCTGGTCATAGTGGGGA 60.253 55.000 0.00 0.00 0.00 4.81
62 63 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
63 64 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
64 65 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
65 66 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
66 67 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
67 68 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
68 69 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
69 70 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
70 71 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
71 72 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
72 73 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
73 74 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
74 75 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
75 76 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
76 77 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
77 78 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
78 79 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
79 80 6.889177 AGTGGGGAGTAACTTAGACTAGTAAC 59.111 42.308 0.00 0.00 0.00 2.50
80 81 6.660949 GTGGGGAGTAACTTAGACTAGTAACA 59.339 42.308 0.00 0.00 0.00 2.41
81 82 7.341512 GTGGGGAGTAACTTAGACTAGTAACAT 59.658 40.741 0.00 0.00 0.00 2.71
82 83 8.560039 TGGGGAGTAACTTAGACTAGTAACATA 58.440 37.037 0.00 0.00 0.00 2.29
83 84 8.845227 GGGGAGTAACTTAGACTAGTAACATAC 58.155 40.741 0.00 0.00 0.00 2.39
84 85 9.401058 GGGAGTAACTTAGACTAGTAACATACA 57.599 37.037 0.00 0.00 0.00 2.29
113 114 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
119 120 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
120 121 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
121 122 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
122 123 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
127 128 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
128 129 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
129 130 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
130 131 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
131 132 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
132 133 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
133 134 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
134 135 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
135 136 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
136 137 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
137 138 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
138 139 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
139 140 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
140 141 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
141 142 4.382362 GGGTAGTGTCATAGGTGTGGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
160 161 8.588290 TGGTAACATAGTTGCCTTCATTTATT 57.412 30.769 16.08 0.00 46.17 1.40
161 162 9.688091 TGGTAACATAGTTGCCTTCATTTATTA 57.312 29.630 16.08 0.00 46.17 0.98
162 163 9.946165 GGTAACATAGTTGCCTTCATTTATTAC 57.054 33.333 9.36 0.00 0.00 1.89
170 171 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
171 172 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
172 173 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
173 174 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
174 175 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
185 186 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
186 187 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
187 188 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
188 189 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
189 190 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
190 191 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
191 192 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
192 193 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
193 194 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
194 195 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
195 196 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
196 197 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
197 198 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
198 199 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
199 200 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
200 201 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
201 202 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
202 203 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
203 204 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
204 205 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
205 206 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
206 207 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
235 236 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
236 237 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
237 238 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
238 239 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
239 240 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
240 241 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
241 242 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
242 243 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
243 244 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
244 245 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
245 246 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
246 247 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
247 248 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
248 249 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
249 250 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
250 251 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
251 252 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
252 253 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
253 254 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
254 255 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
255 256 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
256 257 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
257 258 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
258 259 5.824624 CCTCATTAACTACTTGCCACATCAT 59.175 40.000 0.00 0.00 0.00 2.45
259 260 6.017605 CCTCATTAACTACTTGCCACATCATC 60.018 42.308 0.00 0.00 0.00 2.92
260 261 6.413892 TCATTAACTACTTGCCACATCATCA 58.586 36.000 0.00 0.00 0.00 3.07
261 262 7.056006 TCATTAACTACTTGCCACATCATCAT 58.944 34.615 0.00 0.00 0.00 2.45
262 263 7.557358 TCATTAACTACTTGCCACATCATCATT 59.443 33.333 0.00 0.00 0.00 2.57
263 264 7.701539 TTAACTACTTGCCACATCATCATTT 57.298 32.000 0.00 0.00 0.00 2.32
264 265 6.594788 AACTACTTGCCACATCATCATTTT 57.405 33.333 0.00 0.00 0.00 1.82
265 266 6.594788 ACTACTTGCCACATCATCATTTTT 57.405 33.333 0.00 0.00 0.00 1.94
266 267 6.392354 ACTACTTGCCACATCATCATTTTTG 58.608 36.000 0.00 0.00 0.00 2.44
267 268 3.998341 ACTTGCCACATCATCATTTTTGC 59.002 39.130 0.00 0.00 0.00 3.68
268 269 3.965379 TGCCACATCATCATTTTTGCT 57.035 38.095 0.00 0.00 0.00 3.91
269 270 4.274602 TGCCACATCATCATTTTTGCTT 57.725 36.364 0.00 0.00 0.00 3.91
270 271 5.402997 TGCCACATCATCATTTTTGCTTA 57.597 34.783 0.00 0.00 0.00 3.09
271 272 5.979993 TGCCACATCATCATTTTTGCTTAT 58.020 33.333 0.00 0.00 0.00 1.73
272 273 5.813157 TGCCACATCATCATTTTTGCTTATG 59.187 36.000 0.00 0.00 0.00 1.90
273 274 5.813672 GCCACATCATCATTTTTGCTTATGT 59.186 36.000 0.00 0.00 0.00 2.29
274 275 6.237996 GCCACATCATCATTTTTGCTTATGTG 60.238 38.462 0.00 0.00 41.50 3.21
275 276 7.229228 CACATCATCATTTTTGCTTATGTGG 57.771 36.000 0.00 0.00 39.34 4.17
276 277 5.813672 ACATCATCATTTTTGCTTATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
277 278 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
278 279 5.979993 TCATCATTTTTGCTTATGTGGCAT 58.020 33.333 0.00 0.00 39.54 4.40
279 280 6.044046 TCATCATTTTTGCTTATGTGGCATC 58.956 36.000 0.00 0.00 39.54 3.91
280 281 5.664294 TCATTTTTGCTTATGTGGCATCT 57.336 34.783 0.00 0.00 39.54 2.90
281 282 6.772360 TCATTTTTGCTTATGTGGCATCTA 57.228 33.333 0.00 0.00 39.54 1.98
282 283 7.350744 TCATTTTTGCTTATGTGGCATCTAT 57.649 32.000 0.00 0.00 39.54 1.98
283 284 7.204604 TCATTTTTGCTTATGTGGCATCTATG 58.795 34.615 0.00 0.00 39.54 2.23
284 285 6.528537 TTTTTGCTTATGTGGCATCTATGT 57.471 33.333 0.00 0.00 39.54 2.29
285 286 6.528537 TTTTGCTTATGTGGCATCTATGTT 57.471 33.333 0.00 0.00 39.54 2.71
286 287 7.637631 TTTTGCTTATGTGGCATCTATGTTA 57.362 32.000 0.00 0.00 39.54 2.41
287 288 6.618287 TTGCTTATGTGGCATCTATGTTAC 57.382 37.500 0.00 0.00 39.54 2.50
288 289 5.928976 TGCTTATGTGGCATCTATGTTACT 58.071 37.500 0.00 0.00 34.56 2.24
289 290 7.061566 TGCTTATGTGGCATCTATGTTACTA 57.938 36.000 0.00 0.00 34.56 1.82
290 291 7.679783 TGCTTATGTGGCATCTATGTTACTAT 58.320 34.615 0.00 0.00 34.56 2.12
291 292 7.819415 TGCTTATGTGGCATCTATGTTACTATC 59.181 37.037 0.00 0.00 34.56 2.08
292 293 8.037758 GCTTATGTGGCATCTATGTTACTATCT 58.962 37.037 0.00 0.00 0.00 1.98
296 297 8.422577 TGTGGCATCTATGTTACTATCTATGT 57.577 34.615 0.00 0.00 0.00 2.29
297 298 8.870116 TGTGGCATCTATGTTACTATCTATGTT 58.130 33.333 0.00 0.00 0.00 2.71
311 312 8.638629 ACTATCTATGTTACTCCCACTATGAC 57.361 38.462 0.00 0.00 0.00 3.06
312 313 6.919775 ATCTATGTTACTCCCACTATGACC 57.080 41.667 0.00 0.00 0.00 4.02
313 314 5.773091 TCTATGTTACTCCCACTATGACCA 58.227 41.667 0.00 0.00 0.00 4.02
314 315 5.833667 TCTATGTTACTCCCACTATGACCAG 59.166 44.000 0.00 0.00 0.00 4.00
315 316 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
395 400 6.870439 CCTTGATTCCCAATTTCTTTCTTCAC 59.130 38.462 0.00 0.00 33.68 3.18
430 440 3.397849 AAACAGGAACTAACGTCTCCC 57.602 47.619 0.00 0.00 36.02 4.30
433 443 1.477295 CAGGAACTAACGTCTCCCTCC 59.523 57.143 0.00 0.00 36.02 4.30
458 468 3.186119 CCTCTCGCTGACAATTTCTCTC 58.814 50.000 0.00 0.00 0.00 3.20
459 469 3.186119 CTCTCGCTGACAATTTCTCTCC 58.814 50.000 0.00 0.00 0.00 3.71
570 606 0.954452 AAGAAAAAGGCCAGCACTCG 59.046 50.000 5.01 0.00 0.00 4.18
584 620 0.323908 CACTCGGGAAGGAGAGAGGT 60.324 60.000 0.00 0.00 37.87 3.85
585 621 0.410270 ACTCGGGAAGGAGAGAGGTT 59.590 55.000 0.00 0.00 37.87 3.50
743 780 3.126831 CTCCAAGAAGATCCCGATTTCG 58.873 50.000 0.00 0.00 39.44 3.46
761 798 0.532862 CGGTTGCAGTTGTGGAGTCT 60.533 55.000 0.00 0.00 0.00 3.24
1684 1723 6.713762 TGAACATTTTCTAATGGCATAGGG 57.286 37.500 0.00 0.00 44.42 3.53
1699 1738 3.614092 CATAGGGCATTCTGTCAGTTGT 58.386 45.455 0.00 0.00 0.00 3.32
1748 1787 7.449395 CCCATAAGCTTTGGAATATCATTCTCA 59.551 37.037 21.94 0.00 36.26 3.27
1763 1802 2.602257 TCTCAATATCGTGGTGCAGG 57.398 50.000 0.00 0.00 0.00 4.85
1784 1823 3.621715 GGTAGAAAAATAGAGCCCACACG 59.378 47.826 0.00 0.00 0.00 4.49
1859 1918 3.041508 ACTACGCTTTTTCTCACCCTC 57.958 47.619 0.00 0.00 0.00 4.30
1956 2015 9.308318 GAAAAATTGTGGCACTTAAGAAAGTTA 57.692 29.630 19.83 0.00 43.60 2.24
2717 2777 8.842280 TGTTGTTAACTTTATGACACTTAAGGG 58.158 33.333 2.27 2.27 0.00 3.95
2819 2879 7.175104 AGTTCTGGGCTAATTTGAAGTTATCA 58.825 34.615 0.00 0.00 35.85 2.15
2901 2961 1.777272 ACTTCCCTCCTTCAGCTTTGT 59.223 47.619 0.00 0.00 0.00 2.83
2983 3043 5.823045 CCCTTGAAAGTGAAGTAAGTTCTGT 59.177 40.000 0.00 0.00 35.99 3.41
3089 3210 7.979444 TGTTAGCTAAAAGTGCTTTATGTCT 57.021 32.000 7.99 0.00 41.46 3.41
3090 3211 8.391075 TGTTAGCTAAAAGTGCTTTATGTCTT 57.609 30.769 7.99 0.00 41.46 3.01
3098 3219 5.710513 AGTGCTTTATGTCTTTGCAATCA 57.289 34.783 0.00 0.68 35.34 2.57
3175 3301 8.804743 CATTTACAACTAGTACAACCTCATACG 58.195 37.037 0.00 0.00 30.91 3.06
3351 3477 3.387962 TGTCATATTCTTCCTCCTGGCT 58.612 45.455 0.00 0.00 0.00 4.75
3442 3568 3.368427 GCTAGTTGCTACAGGATGACACA 60.368 47.826 0.13 0.00 38.03 3.72
3571 3861 4.643784 CCAATTTAGAAGCCATCTTGAGCT 59.356 41.667 0.00 0.00 42.40 4.09
3582 3872 5.009410 AGCCATCTTGAGCTGCAATAATTAC 59.991 40.000 1.02 0.00 38.11 1.89
3591 3881 5.170748 AGCTGCAATAATTACAGGCAAAAC 58.829 37.500 1.02 3.16 33.58 2.43
3630 3920 9.643693 AACAAAACAAATGATCATATCTTGGTC 57.356 29.630 18.36 0.00 35.89 4.02
3822 4114 0.923358 TCCCAGTCCCTGTTGTTTGT 59.077 50.000 0.00 0.00 0.00 2.83
3947 4239 1.079543 GACACGAGCTGGACATGCT 60.080 57.895 1.44 0.00 44.24 3.79
4154 4447 7.173218 TGCAAATAAGGTTAACAGAAGAGTGAG 59.827 37.037 8.10 0.00 0.00 3.51
4233 4527 7.892778 ACAAAACACGTTTTAGTTGGATTTT 57.107 28.000 7.53 0.00 40.45 1.82
4234 4528 8.312896 ACAAAACACGTTTTAGTTGGATTTTT 57.687 26.923 7.53 0.00 40.45 1.94
4388 4694 1.219124 GATGCCGGCACTCTCTTCA 59.781 57.895 35.50 5.26 0.00 3.02
4444 4750 0.679640 AGAGAGAGTAGCGCTGCAGT 60.680 55.000 27.43 13.72 0.00 4.40
4608 4915 0.111253 CCTTCCTGCCATACCCATCC 59.889 60.000 0.00 0.00 0.00 3.51
4726 5034 1.242076 GAATCTGTTGCTGCCACACT 58.758 50.000 1.99 0.00 0.00 3.55
4757 5067 6.591935 AGATCAAATTTATAAGAGACCGCCA 58.408 36.000 0.00 0.00 0.00 5.69
4778 5105 2.277628 GCGAGGAAGACGCGAGAG 60.278 66.667 15.93 0.00 45.76 3.20
4930 5268 0.321653 AGATCAGTTGTCGTTGGGGC 60.322 55.000 0.00 0.00 0.00 5.80
4941 5279 2.776526 TTGGGGCAGGACCAGTGT 60.777 61.111 0.00 0.00 42.05 3.55
5082 5467 4.830765 GCTGTATGCCGGTCGCCA 62.831 66.667 1.90 0.00 36.24 5.69
5109 5494 5.220381 GCGGATGATGAACTCGTTTATAGA 58.780 41.667 0.00 0.00 0.00 1.98
5110 5495 5.690409 GCGGATGATGAACTCGTTTATAGAA 59.310 40.000 0.00 0.00 0.00 2.10
5111 5496 6.200286 GCGGATGATGAACTCGTTTATAGAAA 59.800 38.462 0.00 0.00 0.00 2.52
5112 5497 7.254319 GCGGATGATGAACTCGTTTATAGAAAA 60.254 37.037 0.00 0.00 0.00 2.29
5113 5498 8.600625 CGGATGATGAACTCGTTTATAGAAAAA 58.399 33.333 0.00 0.00 0.00 1.94
5114 5499 9.704098 GGATGATGAACTCGTTTATAGAAAAAC 57.296 33.333 0.00 0.00 36.26 2.43
5259 5647 2.729028 ACAAGTGTAGGCCAAACTGT 57.271 45.000 5.01 0.50 0.00 3.55
5532 5921 5.204292 TGCCTCTGTATATCTGAAGTGACT 58.796 41.667 0.00 0.00 0.00 3.41
5624 6013 1.629861 TGTGATCCATCAAGTCTGCCA 59.370 47.619 0.00 0.00 38.75 4.92
5748 6137 6.624861 GCAATTTCGACAGATGGGTTTTATCA 60.625 38.462 0.00 0.00 0.00 2.15
5874 6263 1.745087 AGCACAAAATGGCACTATCGG 59.255 47.619 0.00 0.00 0.00 4.18
5886 6275 4.162698 TGGCACTATCGGTTTACAGGTATT 59.837 41.667 0.00 0.00 0.00 1.89
5887 6276 5.121105 GGCACTATCGGTTTACAGGTATTT 58.879 41.667 0.00 0.00 0.00 1.40
5944 6333 0.470341 GGCATACCAAGGGTCTCCTC 59.530 60.000 0.00 0.00 44.07 3.71
6007 6396 5.063817 GCTTTGAAACATGCCATTCAATACC 59.936 40.000 17.46 9.09 43.04 2.73
6227 6616 8.999220 AATCTGATGTCATACTGCTACATATG 57.001 34.615 0.00 0.00 34.09 1.78
6235 6624 8.040727 TGTCATACTGCTACATATGAACAGTTT 58.959 33.333 24.34 17.86 41.56 2.66
6349 6738 3.256704 TCCAAAGGAGGATGGTGTTACT 58.743 45.455 0.00 0.00 37.94 2.24
6840 7229 2.789409 AGCCTTTAAGAGCCGTGATT 57.211 45.000 0.00 0.00 0.00 2.57
7179 7568 2.041115 CGCCGAGAGAGACCAGTCA 61.041 63.158 0.00 0.00 0.00 3.41
7191 7580 1.445754 CCAGTCAGAGTCGCTGCTG 60.446 63.158 15.81 15.81 44.52 4.41
7243 7632 2.109126 AAAGCTCGGCTCGGCATTC 61.109 57.895 0.00 0.00 38.25 2.67
7396 7788 2.027285 AGAAGAAGAAGGCCTGCTCTTC 60.027 50.000 28.87 28.87 45.26 2.87
7397 7789 1.356124 AGAAGAAGGCCTGCTCTTCA 58.644 50.000 33.73 0.00 46.65 3.02
7629 8023 5.591099 TGTCTTGCCTTTCAATTCAGTTTC 58.409 37.500 0.00 0.00 33.57 2.78
7630 8024 5.126869 TGTCTTGCCTTTCAATTCAGTTTCA 59.873 36.000 0.00 0.00 33.57 2.69
7631 8025 6.042143 GTCTTGCCTTTCAATTCAGTTTCAA 58.958 36.000 0.00 0.00 33.57 2.69
7713 8130 4.092383 CGAATCGGACGTTCCAAAATAAGT 59.908 41.667 0.00 0.00 35.91 2.24
7789 8207 4.434354 AGACGCCGAGAGCCTCCT 62.434 66.667 0.00 0.00 38.78 3.69
7817 8235 4.264638 GCCTCTCGCTCTCGCTCC 62.265 72.222 0.00 0.00 35.26 4.70
7818 8236 3.591835 CCTCTCGCTCTCGCTCCC 61.592 72.222 0.00 0.00 35.26 4.30
7819 8237 3.591835 CTCTCGCTCTCGCTCCCC 61.592 72.222 0.00 0.00 35.26 4.81
7820 8238 4.426313 TCTCGCTCTCGCTCCCCA 62.426 66.667 0.00 0.00 35.26 4.96
7821 8239 4.200283 CTCGCTCTCGCTCCCCAC 62.200 72.222 0.00 0.00 35.26 4.61
7824 8242 4.154347 GCTCTCGCTCCCCACCAG 62.154 72.222 0.00 0.00 0.00 4.00
7825 8243 4.154347 CTCTCGCTCCCCACCAGC 62.154 72.222 0.00 0.00 0.00 4.85
7826 8244 4.704103 TCTCGCTCCCCACCAGCT 62.704 66.667 0.00 0.00 34.45 4.24
7827 8245 3.710722 CTCGCTCCCCACCAGCTT 61.711 66.667 0.00 0.00 34.45 3.74
7862 8285 3.743636 TGTGATGCGACGGCGAGA 61.744 61.111 18.90 0.00 44.10 4.04
7896 8319 4.785453 GCGCCCTTCTCCCACCTG 62.785 72.222 0.00 0.00 0.00 4.00
7897 8320 4.785453 CGCCCTTCTCCCACCTGC 62.785 72.222 0.00 0.00 0.00 4.85
7898 8321 4.785453 GCCCTTCTCCCACCTGCG 62.785 72.222 0.00 0.00 0.00 5.18
7899 8322 4.785453 CCCTTCTCCCACCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
7900 8323 4.785453 CCTTCTCCCACCTGCGCC 62.785 72.222 4.18 0.00 0.00 6.53
7993 8422 3.365265 GCACCTGCCCAAGAACCG 61.365 66.667 0.00 0.00 34.31 4.44
8033 8462 2.937959 CTTCTCCCCCTCCTCCCTCG 62.938 70.000 0.00 0.00 0.00 4.63
8041 8470 2.123251 TCCTCCCTCGCCTCCATC 60.123 66.667 0.00 0.00 0.00 3.51
8118 8547 4.473520 ATTCACGCTCGGCCTGGG 62.474 66.667 0.00 4.54 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.049955 TCCCTATGGTTCTGTCAAACTTAG 57.950 41.667 0.00 0.00 0.00 2.18
1 2 6.442541 TTCCCTATGGTTCTGTCAAACTTA 57.557 37.500 0.00 0.00 0.00 2.24
2 3 4.993705 TCCCTATGGTTCTGTCAAACTT 57.006 40.909 0.00 0.00 0.00 2.66
3 4 4.993705 TTCCCTATGGTTCTGTCAAACT 57.006 40.909 0.00 0.00 0.00 2.66
4 5 5.253330 TGATTCCCTATGGTTCTGTCAAAC 58.747 41.667 0.00 0.00 0.00 2.93
5 6 5.512942 TGATTCCCTATGGTTCTGTCAAA 57.487 39.130 0.00 0.00 0.00 2.69
6 7 5.512942 TTGATTCCCTATGGTTCTGTCAA 57.487 39.130 0.00 0.00 0.00 3.18
7 8 5.250543 TCTTTGATTCCCTATGGTTCTGTCA 59.749 40.000 0.00 0.00 0.00 3.58
8 9 5.745227 TCTTTGATTCCCTATGGTTCTGTC 58.255 41.667 0.00 0.00 0.00 3.51
9 10 5.779241 TCTTTGATTCCCTATGGTTCTGT 57.221 39.130 0.00 0.00 0.00 3.41
10 11 6.261826 GTGATCTTTGATTCCCTATGGTTCTG 59.738 42.308 0.00 0.00 0.00 3.02
11 12 6.069440 TGTGATCTTTGATTCCCTATGGTTCT 60.069 38.462 0.00 0.00 0.00 3.01
12 13 6.122277 TGTGATCTTTGATTCCCTATGGTTC 58.878 40.000 0.00 0.00 0.00 3.62
13 14 6.078456 TGTGATCTTTGATTCCCTATGGTT 57.922 37.500 0.00 0.00 0.00 3.67
14 15 5.715439 TGTGATCTTTGATTCCCTATGGT 57.285 39.130 0.00 0.00 0.00 3.55
15 16 5.475909 CCATGTGATCTTTGATTCCCTATGG 59.524 44.000 0.00 0.00 0.00 2.74
16 17 5.048224 GCCATGTGATCTTTGATTCCCTATG 60.048 44.000 0.00 0.00 0.00 2.23
17 18 5.075493 GCCATGTGATCTTTGATTCCCTAT 58.925 41.667 0.00 0.00 0.00 2.57
18 19 4.166725 AGCCATGTGATCTTTGATTCCCTA 59.833 41.667 0.00 0.00 0.00 3.53
19 20 3.053095 AGCCATGTGATCTTTGATTCCCT 60.053 43.478 0.00 0.00 0.00 4.20
20 21 3.294214 AGCCATGTGATCTTTGATTCCC 58.706 45.455 0.00 0.00 0.00 3.97
21 22 5.009410 CCTTAGCCATGTGATCTTTGATTCC 59.991 44.000 0.00 0.00 0.00 3.01
22 23 5.506982 GCCTTAGCCATGTGATCTTTGATTC 60.507 44.000 0.00 0.00 0.00 2.52
23 24 4.340381 GCCTTAGCCATGTGATCTTTGATT 59.660 41.667 0.00 0.00 0.00 2.57
24 25 3.887716 GCCTTAGCCATGTGATCTTTGAT 59.112 43.478 0.00 0.00 0.00 2.57
25 26 3.054139 AGCCTTAGCCATGTGATCTTTGA 60.054 43.478 0.00 0.00 41.25 2.69
26 27 3.066342 CAGCCTTAGCCATGTGATCTTTG 59.934 47.826 0.00 0.00 41.25 2.77
27 28 3.285484 CAGCCTTAGCCATGTGATCTTT 58.715 45.455 0.00 0.00 41.25 2.52
28 29 2.422519 CCAGCCTTAGCCATGTGATCTT 60.423 50.000 0.00 0.00 41.25 2.40
29 30 1.142465 CCAGCCTTAGCCATGTGATCT 59.858 52.381 0.00 0.00 41.25 2.75
30 31 1.133976 ACCAGCCTTAGCCATGTGATC 60.134 52.381 0.00 0.00 41.25 2.92
31 32 0.921896 ACCAGCCTTAGCCATGTGAT 59.078 50.000 0.00 0.00 41.25 3.06
32 33 0.253044 GACCAGCCTTAGCCATGTGA 59.747 55.000 0.00 0.00 41.25 3.58
33 34 0.035152 TGACCAGCCTTAGCCATGTG 60.035 55.000 0.00 0.00 41.25 3.21
34 35 0.921896 ATGACCAGCCTTAGCCATGT 59.078 50.000 0.00 0.00 41.25 3.21
35 36 2.105477 ACTATGACCAGCCTTAGCCATG 59.895 50.000 0.00 0.00 41.25 3.66
36 37 2.105477 CACTATGACCAGCCTTAGCCAT 59.895 50.000 0.00 0.00 41.25 4.40
37 38 1.486310 CACTATGACCAGCCTTAGCCA 59.514 52.381 0.00 0.00 41.25 4.75
38 39 1.202698 CCACTATGACCAGCCTTAGCC 60.203 57.143 0.00 0.00 41.25 3.93
39 40 1.202698 CCCACTATGACCAGCCTTAGC 60.203 57.143 0.00 0.00 40.32 3.09
40 41 1.417890 CCCCACTATGACCAGCCTTAG 59.582 57.143 0.00 0.00 0.00 2.18
41 42 1.009060 TCCCCACTATGACCAGCCTTA 59.991 52.381 0.00 0.00 0.00 2.69
42 43 0.253160 TCCCCACTATGACCAGCCTT 60.253 55.000 0.00 0.00 0.00 4.35
43 44 0.692419 CTCCCCACTATGACCAGCCT 60.692 60.000 0.00 0.00 0.00 4.58
44 45 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
45 46 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
46 47 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
47 48 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
48 49 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
49 50 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
50 51 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
51 52 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
52 53 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
53 54 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
54 55 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
55 56 6.660949 TGTTACTAGTCTAAGTTACTCCCCAC 59.339 42.308 0.00 0.00 31.82 4.61
56 57 6.793478 TGTTACTAGTCTAAGTTACTCCCCA 58.207 40.000 0.00 0.00 31.82 4.96
57 58 7.894753 ATGTTACTAGTCTAAGTTACTCCCC 57.105 40.000 0.00 0.00 31.82 4.81
58 59 9.401058 TGTATGTTACTAGTCTAAGTTACTCCC 57.599 37.037 0.00 0.00 31.82 4.30
87 88 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
93 94 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
94 95 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
95 96 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
96 97 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
97 98 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
98 99 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
99 100 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
106 107 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
107 108 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
108 109 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
109 110 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
110 111 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
111 112 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
112 113 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
113 114 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
114 115 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
115 116 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
116 117 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
117 118 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
118 119 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
119 120 4.221262 TGTTACCACACCTATGACACTACC 59.779 45.833 0.00 0.00 0.00 3.18
120 121 5.395682 TGTTACCACACCTATGACACTAC 57.604 43.478 0.00 0.00 0.00 2.73
121 122 6.893554 ACTATGTTACCACACCTATGACACTA 59.106 38.462 0.00 0.00 35.03 2.74
122 123 5.720041 ACTATGTTACCACACCTATGACACT 59.280 40.000 0.00 0.00 35.03 3.55
123 124 5.974108 ACTATGTTACCACACCTATGACAC 58.026 41.667 0.00 0.00 35.03 3.67
124 125 6.403049 CAACTATGTTACCACACCTATGACA 58.597 40.000 0.00 0.00 35.03 3.58
125 126 5.293569 GCAACTATGTTACCACACCTATGAC 59.706 44.000 0.00 0.00 35.03 3.06
126 127 5.424757 GCAACTATGTTACCACACCTATGA 58.575 41.667 0.00 0.00 35.03 2.15
127 128 4.574828 GGCAACTATGTTACCACACCTATG 59.425 45.833 0.00 0.00 35.03 2.23
128 129 4.777463 GGCAACTATGTTACCACACCTAT 58.223 43.478 0.00 0.00 35.03 2.57
129 130 4.210724 GGCAACTATGTTACCACACCTA 57.789 45.455 0.00 0.00 35.03 3.08
130 131 3.067684 GGCAACTATGTTACCACACCT 57.932 47.619 0.00 0.00 35.03 4.00
145 146 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
146 147 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
147 148 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
148 149 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
159 160 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
160 161 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
161 162 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
162 163 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
163 164 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
164 165 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
165 166 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
166 167 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
167 168 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
168 169 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
169 170 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
170 171 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
171 172 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
172 173 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
173 174 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
174 175 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
175 176 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
176 177 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
177 178 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
178 179 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
179 180 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
180 181 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
181 182 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
182 183 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
183 184 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
184 185 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
185 186 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
186 187 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
187 188 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
188 189 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
189 190 7.549134 ACATAATATGTTACCATCACATAGCGG 59.451 37.037 0.00 0.00 41.63 5.52
190 191 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
209 210 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
210 211 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
211 212 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
212 213 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
213 214 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
214 215 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
215 216 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
216 217 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
217 218 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
218 219 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
219 220 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
220 221 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
221 222 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
222 223 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
223 224 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
224 225 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
225 226 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
226 227 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
227 228 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
228 229 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
229 230 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
230 231 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
231 232 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
232 233 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
233 234 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
234 235 5.185454 TGATGTGGCAAGTAGTTAATGAGG 58.815 41.667 0.00 0.00 0.00 3.86
235 236 6.539826 TGATGATGTGGCAAGTAGTTAATGAG 59.460 38.462 0.00 0.00 0.00 2.90
236 237 6.413892 TGATGATGTGGCAAGTAGTTAATGA 58.586 36.000 0.00 0.00 0.00 2.57
237 238 6.682423 TGATGATGTGGCAAGTAGTTAATG 57.318 37.500 0.00 0.00 0.00 1.90
238 239 7.886629 AATGATGATGTGGCAAGTAGTTAAT 57.113 32.000 0.00 0.00 0.00 1.40
239 240 7.701539 AAATGATGATGTGGCAAGTAGTTAA 57.298 32.000 0.00 0.00 0.00 2.01
240 241 7.701539 AAAATGATGATGTGGCAAGTAGTTA 57.298 32.000 0.00 0.00 0.00 2.24
241 242 6.594788 AAAATGATGATGTGGCAAGTAGTT 57.405 33.333 0.00 0.00 0.00 2.24
242 243 6.392354 CAAAAATGATGATGTGGCAAGTAGT 58.608 36.000 0.00 0.00 0.00 2.73
243 244 5.290158 GCAAAAATGATGATGTGGCAAGTAG 59.710 40.000 0.00 0.00 0.00 2.57
244 245 5.047164 AGCAAAAATGATGATGTGGCAAGTA 60.047 36.000 0.00 0.00 0.00 2.24
245 246 3.998341 GCAAAAATGATGATGTGGCAAGT 59.002 39.130 0.00 0.00 0.00 3.16
246 247 4.250464 AGCAAAAATGATGATGTGGCAAG 58.750 39.130 0.00 0.00 0.00 4.01
247 248 4.274602 AGCAAAAATGATGATGTGGCAA 57.725 36.364 0.00 0.00 0.00 4.52
248 249 3.965379 AGCAAAAATGATGATGTGGCA 57.035 38.095 0.00 0.00 0.00 4.92
249 250 5.813672 ACATAAGCAAAAATGATGATGTGGC 59.186 36.000 0.00 0.00 0.00 5.01
250 251 7.229228 CACATAAGCAAAAATGATGATGTGG 57.771 36.000 14.08 0.34 39.34 4.17
251 252 6.237996 GCCACATAAGCAAAAATGATGATGTG 60.238 38.462 14.69 14.69 41.53 3.21
252 253 5.813672 GCCACATAAGCAAAAATGATGATGT 59.186 36.000 0.00 0.00 0.00 3.06
253 254 5.813157 TGCCACATAAGCAAAAATGATGATG 59.187 36.000 0.00 0.00 37.28 3.07
254 255 5.979993 TGCCACATAAGCAAAAATGATGAT 58.020 33.333 0.00 0.00 37.28 2.45
255 256 5.402997 TGCCACATAAGCAAAAATGATGA 57.597 34.783 0.00 0.00 37.28 2.92
256 257 6.046593 AGATGCCACATAAGCAAAAATGATG 58.953 36.000 0.00 0.00 44.83 3.07
257 258 6.229936 AGATGCCACATAAGCAAAAATGAT 57.770 33.333 0.00 0.00 44.83 2.45
258 259 5.664294 AGATGCCACATAAGCAAAAATGA 57.336 34.783 0.00 0.00 44.83 2.57
259 260 6.982141 ACATAGATGCCACATAAGCAAAAATG 59.018 34.615 0.00 0.00 44.83 2.32
260 261 7.116075 ACATAGATGCCACATAAGCAAAAAT 57.884 32.000 0.00 0.00 44.83 1.82
261 262 6.528537 ACATAGATGCCACATAAGCAAAAA 57.471 33.333 0.00 0.00 44.83 1.94
262 263 6.528537 AACATAGATGCCACATAAGCAAAA 57.471 33.333 0.00 0.00 44.83 2.44
263 264 6.828273 AGTAACATAGATGCCACATAAGCAAA 59.172 34.615 0.00 0.00 44.83 3.68
264 265 6.356556 AGTAACATAGATGCCACATAAGCAA 58.643 36.000 0.00 0.00 44.83 3.91
265 266 5.928976 AGTAACATAGATGCCACATAAGCA 58.071 37.500 0.00 0.00 45.94 3.91
266 267 8.037758 AGATAGTAACATAGATGCCACATAAGC 58.962 37.037 0.00 0.00 0.00 3.09
270 271 9.040259 ACATAGATAGTAACATAGATGCCACAT 57.960 33.333 0.00 0.00 0.00 3.21
271 272 8.422577 ACATAGATAGTAACATAGATGCCACA 57.577 34.615 0.00 0.00 0.00 4.17
285 286 9.736414 GTCATAGTGGGAGTAACATAGATAGTA 57.264 37.037 0.00 0.00 0.00 1.82
286 287 7.670559 GGTCATAGTGGGAGTAACATAGATAGT 59.329 40.741 0.00 0.00 0.00 2.12
287 288 7.670140 TGGTCATAGTGGGAGTAACATAGATAG 59.330 40.741 0.00 0.00 0.00 2.08
288 289 7.532199 TGGTCATAGTGGGAGTAACATAGATA 58.468 38.462 0.00 0.00 0.00 1.98
289 290 6.382087 TGGTCATAGTGGGAGTAACATAGAT 58.618 40.000 0.00 0.00 0.00 1.98
290 291 5.773091 TGGTCATAGTGGGAGTAACATAGA 58.227 41.667 0.00 0.00 0.00 1.98
291 292 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
292 293 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
293 294 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
294 295 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
295 296 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
296 297 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
297 298 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
298 299 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
299 300 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
300 301 2.398588 CTTAGGCTGGTCATAGTGGGA 58.601 52.381 0.00 0.00 0.00 4.37
301 302 1.202698 GCTTAGGCTGGTCATAGTGGG 60.203 57.143 0.00 0.00 35.22 4.61
302 303 1.486310 TGCTTAGGCTGGTCATAGTGG 59.514 52.381 0.00 0.00 39.59 4.00
303 304 2.988010 TGCTTAGGCTGGTCATAGTG 57.012 50.000 0.00 0.00 39.59 2.74
304 305 4.080356 TCAATTGCTTAGGCTGGTCATAGT 60.080 41.667 0.00 0.00 39.59 2.12
305 306 4.454678 TCAATTGCTTAGGCTGGTCATAG 58.545 43.478 0.00 0.00 39.59 2.23
306 307 4.502105 TCAATTGCTTAGGCTGGTCATA 57.498 40.909 0.00 0.00 39.59 2.15
307 308 3.370840 TCAATTGCTTAGGCTGGTCAT 57.629 42.857 0.00 0.00 39.59 3.06
308 309 2.877097 TCAATTGCTTAGGCTGGTCA 57.123 45.000 0.00 0.00 39.59 4.02
309 310 5.126067 TCTATTCAATTGCTTAGGCTGGTC 58.874 41.667 0.00 0.00 39.59 4.02
310 311 5.104360 TCTCTATTCAATTGCTTAGGCTGGT 60.104 40.000 0.00 0.00 39.59 4.00
311 312 5.371526 TCTCTATTCAATTGCTTAGGCTGG 58.628 41.667 0.00 0.00 39.59 4.85
312 313 7.507733 AATCTCTATTCAATTGCTTAGGCTG 57.492 36.000 0.00 0.00 39.59 4.85
313 314 6.426328 CGAATCTCTATTCAATTGCTTAGGCT 59.574 38.462 0.00 0.00 41.44 4.58
314 315 6.425114 TCGAATCTCTATTCAATTGCTTAGGC 59.575 38.462 0.00 0.00 41.44 3.93
315 316 7.655328 ACTCGAATCTCTATTCAATTGCTTAGG 59.345 37.037 0.00 0.07 41.44 2.69
408 417 4.590222 AGGGAGACGTTAGTTCCTGTTTTA 59.410 41.667 0.00 0.00 32.13 1.52
409 418 3.390311 AGGGAGACGTTAGTTCCTGTTTT 59.610 43.478 0.00 0.00 32.13 2.43
430 440 2.124693 GTCAGCGAGAGGGAGGGAG 61.125 68.421 0.00 0.00 0.00 4.30
433 443 0.539051 AATTGTCAGCGAGAGGGAGG 59.461 55.000 0.00 0.00 0.00 4.30
458 468 1.210885 AAAAGGGAGAGGGCAGAGGG 61.211 60.000 0.00 0.00 0.00 4.30
459 469 0.701147 AAAAAGGGAGAGGGCAGAGG 59.299 55.000 0.00 0.00 0.00 3.69
489 520 3.085533 GCTTCCCTTCCCTTCTCTTTTC 58.914 50.000 0.00 0.00 0.00 2.29
570 606 0.252742 TCCCAACCTCTCTCCTTCCC 60.253 60.000 0.00 0.00 0.00 3.97
584 620 0.030705 CAGATCTCCCTCCCTCCCAA 60.031 60.000 0.00 0.00 0.00 4.12
585 621 1.628727 CAGATCTCCCTCCCTCCCA 59.371 63.158 0.00 0.00 0.00 4.37
615 652 3.967335 CCGCCGGAAAACCGCAAA 61.967 61.111 5.05 0.00 0.00 3.68
743 780 1.230324 GAGACTCCACAACTGCAACC 58.770 55.000 0.00 0.00 0.00 3.77
761 798 0.031585 CCAACGACGACTGGAACTGA 59.968 55.000 13.34 0.00 34.35 3.41
1684 1723 6.727824 ACACTATTACAACTGACAGAATGC 57.272 37.500 10.08 0.00 42.53 3.56
1748 1787 4.481368 TTTCTACCTGCACCACGATATT 57.519 40.909 0.00 0.00 0.00 1.28
1751 1790 2.851263 TTTTCTACCTGCACCACGAT 57.149 45.000 0.00 0.00 0.00 3.73
1763 1802 3.063588 GCGTGTGGGCTCTATTTTTCTAC 59.936 47.826 0.00 0.00 0.00 2.59
1784 1823 2.939756 GCTTTAAAGGACTAGGAGCTGC 59.060 50.000 16.78 0.00 0.00 5.25
1859 1918 7.084486 GCCCTATCTGAAATATTTAAAAGGCG 58.916 38.462 0.00 1.39 0.00 5.52
1956 2015 5.074102 TCTCAGGATCCATATTGGCAAATCT 59.926 40.000 15.82 0.00 37.47 2.40
2123 2182 2.694760 GCCAGGTGTAGCAGCAAGC 61.695 63.158 0.00 0.00 46.19 4.01
2694 2754 6.999272 TGCCCTTAAGTGTCATAAAGTTAACA 59.001 34.615 8.61 0.00 0.00 2.41
2717 2777 8.868916 TGAAAGAGTTTAGACAACAAAAATTGC 58.131 29.630 0.00 0.00 32.47 3.56
2819 2879 2.224426 TGGTTTGAAGATGGTAGCACGT 60.224 45.455 0.00 0.00 0.00 4.49
2901 2961 3.724374 CAAGTAAACGGTCCAGAAGTGA 58.276 45.455 0.00 0.00 0.00 3.41
2983 3043 4.079844 TGGATCAATGAATGTAAGGGCAGA 60.080 41.667 0.00 0.00 0.00 4.26
3090 3211 9.258826 GCCAATTATGTTTATATGTGATTGCAA 57.741 29.630 0.00 0.00 0.00 4.08
3098 3219 5.300539 TGGCACGCCAATTATGTTTATATGT 59.699 36.000 8.67 0.00 44.12 2.29
3175 3301 5.582665 CCTGAAAAGTAGAGGTAGAATGCAC 59.417 44.000 0.00 0.00 0.00 4.57
3351 3477 7.462590 TCAGAGGAGATATCGAATAGGAAGAA 58.537 38.462 0.00 0.00 0.00 2.52
3442 3568 2.284039 TGCATGCAGGCCACCATT 60.284 55.556 22.16 0.00 0.00 3.16
3462 3588 3.454719 TCAGCAATTCCATTCCAAGGA 57.545 42.857 0.00 0.00 0.00 3.36
3571 3861 5.127693 ACGTTTTGCCTGTAATTATTGCA 57.872 34.783 0.00 0.00 0.00 4.08
3582 3872 8.563289 TGTTTAACTATAAAACGTTTTGCCTG 57.437 30.769 31.26 20.76 39.23 4.85
3618 3908 6.514012 AGAGAGAGAGAGACCAAGATATGA 57.486 41.667 0.00 0.00 0.00 2.15
3629 3919 6.716284 TGATTGTACAGAAGAGAGAGAGAGA 58.284 40.000 0.00 0.00 0.00 3.10
3630 3920 7.389803 TTGATTGTACAGAAGAGAGAGAGAG 57.610 40.000 0.00 0.00 0.00 3.20
3760 4052 2.282603 GGTGTTTGGGCCGCCTTA 60.283 61.111 9.86 0.00 0.00 2.69
3791 4083 0.321122 GACTGGGAGCTCAAGTGTGG 60.321 60.000 22.06 5.53 0.00 4.17
3822 4114 0.825425 CGAGCTGAGCCTCATCCCTA 60.825 60.000 0.00 0.00 0.00 3.53
3965 4257 3.316501 CATTTCATCCCTCTCTCCCTCT 58.683 50.000 0.00 0.00 0.00 3.69
3967 4259 1.773653 GCATTTCATCCCTCTCTCCCT 59.226 52.381 0.00 0.00 0.00 4.20
4102 4395 2.517959 CACTGCTCCTTTTCCATCCAA 58.482 47.619 0.00 0.00 0.00 3.53
4154 4447 5.183522 ACAACCACTTAGAGCTACTCACTAC 59.816 44.000 0.00 0.00 32.06 2.73
4444 4750 4.629523 GTCGACCAACCCGGCCAA 62.630 66.667 3.51 0.00 39.03 4.52
4550 4856 4.154737 GCTGTTAACATGATCTTGTGCTCA 59.845 41.667 14.42 11.89 0.00 4.26
4557 4863 8.353423 AGTAATTTGGCTGTTAACATGATCTT 57.647 30.769 9.13 2.31 0.00 2.40
4608 4915 6.274001 GCATTCAGATTGCTTTTGATGATG 57.726 37.500 9.63 0.00 37.14 3.07
4778 5105 1.207089 TCACAGTCGACCATTGATCCC 59.793 52.381 13.01 0.00 0.00 3.85
4930 5268 1.372997 CCGTCGAACACTGGTCCTG 60.373 63.158 0.00 0.00 0.00 3.86
5082 5467 1.227380 GAGTTCATCATCCGCCGCT 60.227 57.895 0.00 0.00 0.00 5.52
5187 5573 7.604657 TTGGTTAACATAACAAATCCAAGGT 57.395 32.000 8.10 0.00 31.45 3.50
5259 5647 8.705594 TGTTTGGATACTGGGATTTTACAAAAA 58.294 29.630 0.00 0.00 37.61 1.94
5532 5921 3.306472 ACAAACCAGAAGTTAAGGGCA 57.694 42.857 0.00 0.00 37.88 5.36
5886 6275 9.778741 ATACTAAGATCGGATTAATTCTGCAAA 57.221 29.630 0.00 0.00 0.00 3.68
5926 6315 1.139853 CTGAGGAGACCCTTGGTATGC 59.860 57.143 0.00 0.00 44.53 3.14
6084 6473 9.930693 AAAACAGTTGTGTAAATTAACTTCCAA 57.069 25.926 0.00 0.00 35.08 3.53
6227 6616 6.608610 AGTAATATGAAACGGCAAACTGTTC 58.391 36.000 0.00 0.00 44.83 3.18
6235 6624 7.047891 AGAGATTTGAGTAATATGAAACGGCA 58.952 34.615 0.00 0.00 0.00 5.69
6349 6738 1.925255 AGAGGATCCATTGGAAAGCCA 59.075 47.619 15.82 0.00 38.15 4.75
6785 7174 7.452880 TTGCTTTGCTCTCTACAAATGTTAT 57.547 32.000 0.00 0.00 36.49 1.89
6868 7257 5.324409 AGAACCAACCAGAAATGCTAATGA 58.676 37.500 0.00 0.00 0.00 2.57
7225 7614 2.045926 AATGCCGAGCCGAGCTTT 60.046 55.556 0.00 1.36 39.88 3.51
7239 7628 1.097232 TGCCGAAGCCATCAAGAATG 58.903 50.000 0.00 0.00 38.69 2.67
7240 7629 1.838112 TTGCCGAAGCCATCAAGAAT 58.162 45.000 0.00 0.00 38.69 2.40
7243 7632 0.101759 CCATTGCCGAAGCCATCAAG 59.898 55.000 0.00 0.00 38.69 3.02
7358 7747 0.767375 TCTTCTTGCTGCCAGGAACT 59.233 50.000 0.00 0.00 43.88 3.01
7396 7788 4.183865 TGGCGAAAATCTCTACATGAGTG 58.816 43.478 0.00 0.00 43.13 3.51
7397 7789 4.471904 TGGCGAAAATCTCTACATGAGT 57.528 40.909 0.00 0.00 43.13 3.41
7713 8130 0.320374 ACGCCAAGAGAAATCGGTCA 59.680 50.000 0.00 0.00 0.00 4.02
7789 8207 1.329256 GCGAGAGGCTAATGGTAGGA 58.671 55.000 0.00 0.00 39.11 2.94
7811 8229 3.706373 GAAGCTGGTGGGGAGCGA 61.706 66.667 0.00 0.00 41.61 4.93
8033 8462 0.758123 CAGGAGAAGAGGATGGAGGC 59.242 60.000 0.00 0.00 0.00 4.70
8101 8530 4.473520 CCCAGGCCGAGCGTGAAT 62.474 66.667 16.67 0.00 45.68 2.57
8125 8554 2.038975 CTGGGGAGGACGGAAGGA 59.961 66.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.