Multiple sequence alignment - TraesCS7A01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G319100 chr7A 100.000 3380 0 0 1 3380 459463059 459459680 0.000000e+00 6242.0
1 TraesCS7A01G319100 chr7B 92.733 2009 85 24 707 2698 411343059 411341095 0.000000e+00 2844.0
2 TraesCS7A01G319100 chr7B 91.341 358 24 5 3 359 411343692 411343341 1.820000e-132 483.0
3 TraesCS7A01G319100 chr7B 90.686 204 16 3 352 554 14874762 14874963 5.560000e-68 268.0
4 TraesCS7A01G319100 chr7B 92.553 188 11 3 360 546 477657952 477657767 2.000000e-67 267.0
5 TraesCS7A01G319100 chr7B 90.816 196 16 2 351 546 3622277 3622470 9.300000e-66 261.0
6 TraesCS7A01G319100 chr7D 95.308 1492 52 8 803 2283 401717852 401716368 0.000000e+00 2351.0
7 TraesCS7A01G319100 chr7D 94.167 360 19 2 1686 2044 266894521 266894879 6.380000e-152 547.0
8 TraesCS7A01G319100 chr7D 92.635 353 23 1 1 353 401719079 401718730 3.890000e-139 505.0
9 TraesCS7A01G319100 chr7D 87.778 360 31 9 2341 2698 401716362 401716014 3.140000e-110 409.0
10 TraesCS7A01G319100 chr7D 93.514 185 9 3 358 542 452688008 452688189 4.300000e-69 272.0
11 TraesCS7A01G319100 chr7D 91.566 83 7 0 707 789 401718458 401718376 7.660000e-22 115.0
12 TraesCS7A01G319100 chr2D 95.802 405 17 0 1685 2089 69242635 69243039 0.000000e+00 654.0
13 TraesCS7A01G319100 chr2D 90.909 44 4 0 1542 1585 420900805 420900762 3.640000e-05 60.2
14 TraesCS7A01G319100 chr5B 93.064 346 24 0 1744 2089 493287855 493287510 1.080000e-139 507.0
15 TraesCS7A01G319100 chr1B 92.775 346 25 0 1744 2089 541402788 541402443 5.030000e-138 501.0
16 TraesCS7A01G319100 chr1B 92.197 346 27 0 1744 2089 619097525 619097180 1.090000e-134 490.0
17 TraesCS7A01G319100 chr3A 98.795 166 2 0 2698 2863 737183687 737183522 2.550000e-76 296.0
18 TraesCS7A01G319100 chr3A 94.149 188 7 4 2697 2881 602023224 602023038 1.990000e-72 283.0
19 TraesCS7A01G319100 chr3A 94.972 179 8 1 2696 2873 114688645 114688823 2.570000e-71 279.0
20 TraesCS7A01G319100 chr2A 96.532 173 5 1 2699 2871 760583265 760583436 5.520000e-73 285.0
21 TraesCS7A01G319100 chr6A 92.500 200 10 4 2687 2884 596588276 596588472 7.140000e-72 281.0
22 TraesCS7A01G319100 chr4A 95.455 176 8 0 2699 2874 594145373 594145198 7.140000e-72 281.0
23 TraesCS7A01G319100 chr4A 95.455 176 7 1 2696 2871 583980854 583980680 2.570000e-71 279.0
24 TraesCS7A01G319100 chr4A 94.944 178 8 1 2695 2871 464567603 464567426 9.240000e-71 278.0
25 TraesCS7A01G319100 chr3D 93.989 183 9 2 360 542 506177131 506177311 3.320000e-70 276.0
26 TraesCS7A01G319100 chr3D 92.593 189 12 2 361 549 551486694 551486508 1.550000e-68 270.0
27 TraesCS7A01G319100 chr3B 93.158 190 10 3 2675 2862 762607957 762607769 3.320000e-70 276.0
28 TraesCS7A01G319100 chr2B 93.158 190 10 3 353 542 771215324 771215138 3.320000e-70 276.0
29 TraesCS7A01G319100 chr2B 91.710 193 12 3 355 546 355137106 355137295 7.190000e-67 265.0
30 TraesCS7A01G319100 chr6D 91.237 194 15 2 360 553 445581624 445581433 2.590000e-66 263.0
31 TraesCS7A01G319100 chr5A 78.723 188 30 7 1413 1595 679739429 679739611 2.130000e-22 117.0
32 TraesCS7A01G319100 chr1D 76.923 182 35 7 1413 1592 288540141 288540317 2.780000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G319100 chr7A 459459680 459463059 3379 True 6242.0 6242 100.00000 1 3380 1 chr7A.!!$R1 3379
1 TraesCS7A01G319100 chr7B 411341095 411343692 2597 True 1663.5 2844 92.03700 3 2698 2 chr7B.!!$R2 2695
2 TraesCS7A01G319100 chr7D 401716014 401719079 3065 True 845.0 2351 91.82175 1 2698 4 chr7D.!!$R1 2697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 916 0.028505 CTAGCGCATGCATGGTGAAC 59.971 55.0 27.34 9.8 46.23 3.18 F
791 924 0.473755 TGCATGGTGAACTGGTGACT 59.526 50.0 0.00 0.0 0.00 3.41 F
2285 2943 0.094558 GTCGTGTGTGTGTGTGTGTG 59.905 55.0 0.00 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 2573 0.110056 TGAAGTAGACGCCGTCGAAC 60.110 55.0 12.13 13.91 37.67 3.95 R
2295 2953 0.167908 CCACACACACACACACACAC 59.832 55.0 0.00 0.00 0.00 3.82 R
3359 4022 0.179012 TTGGGACGGTTTTCCTGGTC 60.179 55.0 0.00 0.00 37.95 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 0.967380 GGCACTGTCCAGAAATGGGG 60.967 60.000 0.40 0.00 0.00 4.96
90 91 1.562672 AAATGGGGGAGGGTCGTCTG 61.563 60.000 0.00 0.00 0.00 3.51
107 108 2.572104 GTCTGTAGGTCAAGAATGGGGT 59.428 50.000 0.00 0.00 0.00 4.95
133 134 5.103643 AGGGAAGGATTTTATACCTCCAACC 60.104 44.000 0.00 0.00 35.25 3.77
138 139 1.587066 TTTATACCTCCAACCGGGCT 58.413 50.000 6.32 0.00 36.21 5.19
184 185 1.802337 CTCCCTCCACGTGTCGAACA 61.802 60.000 15.65 0.00 0.00 3.18
189 190 1.372499 CCACGTGTCGAACATCCGT 60.372 57.895 15.65 0.00 32.19 4.69
203 204 0.037326 ATCCGTCATGTCACGCACTT 60.037 50.000 1.57 0.00 38.52 3.16
205 206 1.221466 CCGTCATGTCACGCACTTGT 61.221 55.000 1.57 0.00 38.52 3.16
239 240 1.153309 CATCATGAGCAGCGGTCCA 60.153 57.895 0.09 0.00 0.00 4.02
257 258 1.482593 CCAGACCGAAGCATAGTTCCT 59.517 52.381 0.00 0.00 0.00 3.36
271 272 2.288025 TTCCTGTGTACCGCCCTCC 61.288 63.158 0.00 0.00 0.00 4.30
353 354 5.876612 AGCTGTGAAGAAATGACTGATTC 57.123 39.130 0.00 0.00 0.00 2.52
354 355 5.558818 AGCTGTGAAGAAATGACTGATTCT 58.441 37.500 0.00 0.00 37.49 2.40
355 356 6.002704 AGCTGTGAAGAAATGACTGATTCTT 58.997 36.000 0.72 0.72 45.85 2.52
356 357 6.489361 AGCTGTGAAGAAATGACTGATTCTTT 59.511 34.615 2.66 0.00 43.86 2.52
357 358 7.014038 AGCTGTGAAGAAATGACTGATTCTTTT 59.986 33.333 2.66 0.00 43.86 2.27
358 359 7.650903 GCTGTGAAGAAATGACTGATTCTTTTT 59.349 33.333 2.66 0.00 43.86 1.94
359 360 8.861033 TGTGAAGAAATGACTGATTCTTTTTG 57.139 30.769 2.66 0.00 43.86 2.44
360 361 7.922278 TGTGAAGAAATGACTGATTCTTTTTGG 59.078 33.333 2.66 0.00 43.86 3.28
361 362 7.383300 GTGAAGAAATGACTGATTCTTTTTGGG 59.617 37.037 2.66 0.00 43.86 4.12
362 363 6.983906 AGAAATGACTGATTCTTTTTGGGT 57.016 33.333 0.00 0.00 32.96 4.51
363 364 6.986250 AGAAATGACTGATTCTTTTTGGGTC 58.014 36.000 0.00 0.00 32.96 4.46
364 365 5.728637 AATGACTGATTCTTTTTGGGTCC 57.271 39.130 0.00 0.00 0.00 4.46
365 366 3.146066 TGACTGATTCTTTTTGGGTCCG 58.854 45.455 0.00 0.00 0.00 4.79
366 367 3.146847 GACTGATTCTTTTTGGGTCCGT 58.853 45.455 0.00 0.00 0.00 4.69
367 368 3.146847 ACTGATTCTTTTTGGGTCCGTC 58.853 45.455 0.00 0.00 0.00 4.79
368 369 3.181443 ACTGATTCTTTTTGGGTCCGTCT 60.181 43.478 0.00 0.00 0.00 4.18
369 370 4.041198 ACTGATTCTTTTTGGGTCCGTCTA 59.959 41.667 0.00 0.00 0.00 2.59
370 371 4.575885 TGATTCTTTTTGGGTCCGTCTAG 58.424 43.478 0.00 0.00 0.00 2.43
371 372 3.412237 TTCTTTTTGGGTCCGTCTAGG 57.588 47.619 0.00 0.00 42.97 3.02
386 387 6.174049 TCCGTCTAGGATACATCTAGATGTG 58.826 44.000 37.48 24.17 46.97 3.21
387 388 6.013639 TCCGTCTAGGATACATCTAGATGTGA 60.014 42.308 37.48 25.69 46.97 3.58
388 389 6.092944 CCGTCTAGGATACATCTAGATGTGAC 59.907 46.154 37.48 31.37 46.72 3.67
389 390 8.223889 CCGTCTAGGATACATCTAGATGTGACA 61.224 44.444 37.48 24.06 46.72 3.58
416 417 8.879342 AGTTATGTCACATCTAAGCTAATGTC 57.121 34.615 0.00 0.00 33.92 3.06
417 418 7.928706 AGTTATGTCACATCTAAGCTAATGTCC 59.071 37.037 0.00 2.73 33.92 4.02
418 419 5.675684 TGTCACATCTAAGCTAATGTCCA 57.324 39.130 6.38 4.73 33.92 4.02
419 420 6.239217 TGTCACATCTAAGCTAATGTCCAT 57.761 37.500 6.38 0.00 33.92 3.41
420 421 6.653020 TGTCACATCTAAGCTAATGTCCATT 58.347 36.000 6.38 0.00 33.92 3.16
421 422 6.763135 TGTCACATCTAAGCTAATGTCCATTC 59.237 38.462 6.38 0.00 33.92 2.67
422 423 6.989169 GTCACATCTAAGCTAATGTCCATTCT 59.011 38.462 6.38 0.00 33.92 2.40
423 424 6.988580 TCACATCTAAGCTAATGTCCATTCTG 59.011 38.462 6.38 0.00 33.92 3.02
424 425 6.765036 CACATCTAAGCTAATGTCCATTCTGT 59.235 38.462 6.38 0.00 33.92 3.41
425 426 7.281774 CACATCTAAGCTAATGTCCATTCTGTT 59.718 37.037 6.38 0.00 33.92 3.16
426 427 7.831193 ACATCTAAGCTAATGTCCATTCTGTTT 59.169 33.333 4.03 0.00 30.35 2.83
427 428 7.615582 TCTAAGCTAATGTCCATTCTGTTTG 57.384 36.000 0.00 0.00 32.50 2.93
428 429 7.168219 TCTAAGCTAATGTCCATTCTGTTTGT 58.832 34.615 0.00 0.00 32.50 2.83
429 430 5.633830 AGCTAATGTCCATTCTGTTTGTG 57.366 39.130 0.00 0.00 32.50 3.33
430 431 4.460382 AGCTAATGTCCATTCTGTTTGTGG 59.540 41.667 0.00 0.00 32.50 4.17
431 432 4.218417 GCTAATGTCCATTCTGTTTGTGGT 59.782 41.667 0.00 0.00 34.61 4.16
432 433 4.853924 AATGTCCATTCTGTTTGTGGTC 57.146 40.909 0.00 0.00 34.61 4.02
433 434 3.576078 TGTCCATTCTGTTTGTGGTCT 57.424 42.857 0.00 0.00 34.61 3.85
434 435 4.698201 TGTCCATTCTGTTTGTGGTCTA 57.302 40.909 0.00 0.00 34.61 2.59
435 436 5.241403 TGTCCATTCTGTTTGTGGTCTAT 57.759 39.130 0.00 0.00 34.61 1.98
436 437 5.630121 TGTCCATTCTGTTTGTGGTCTATT 58.370 37.500 0.00 0.00 34.61 1.73
437 438 6.068010 TGTCCATTCTGTTTGTGGTCTATTT 58.932 36.000 0.00 0.00 34.61 1.40
438 439 6.549364 TGTCCATTCTGTTTGTGGTCTATTTT 59.451 34.615 0.00 0.00 34.61 1.82
439 440 7.069331 TGTCCATTCTGTTTGTGGTCTATTTTT 59.931 33.333 0.00 0.00 34.61 1.94
476 477 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
477 478 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
478 479 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
479 480 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
480 481 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
481 482 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
487 488 9.518906 TTCTTGTTGCTGCATTATATATTTGTG 57.481 29.630 1.84 0.00 0.00 3.33
488 489 8.136800 TCTTGTTGCTGCATTATATATTTGTGG 58.863 33.333 1.84 0.00 0.00 4.17
489 490 7.579761 TGTTGCTGCATTATATATTTGTGGA 57.420 32.000 1.84 0.00 0.00 4.02
490 491 8.005192 TGTTGCTGCATTATATATTTGTGGAA 57.995 30.769 1.84 0.00 0.00 3.53
491 492 8.136800 TGTTGCTGCATTATATATTTGTGGAAG 58.863 33.333 1.84 0.00 0.00 3.46
492 493 6.680810 TGCTGCATTATATATTTGTGGAAGC 58.319 36.000 0.00 0.00 0.00 3.86
493 494 6.491062 TGCTGCATTATATATTTGTGGAAGCT 59.509 34.615 0.00 0.00 0.00 3.74
494 495 7.014518 TGCTGCATTATATATTTGTGGAAGCTT 59.985 33.333 0.00 0.00 0.00 3.74
495 496 8.514594 GCTGCATTATATATTTGTGGAAGCTTA 58.485 33.333 0.00 0.00 0.00 3.09
497 498 9.791801 TGCATTATATATTTGTGGAAGCTTAGA 57.208 29.630 0.00 0.00 0.00 2.10
503 504 5.886960 ATTTGTGGAAGCTTAGATGTGAC 57.113 39.130 0.00 0.00 0.00 3.67
504 505 4.350368 TTGTGGAAGCTTAGATGTGACA 57.650 40.909 0.00 0.00 0.00 3.58
505 506 4.558226 TGTGGAAGCTTAGATGTGACAT 57.442 40.909 0.00 0.00 0.00 3.06
506 507 4.507710 TGTGGAAGCTTAGATGTGACATC 58.492 43.478 17.46 17.46 0.00 3.06
507 508 3.873952 GTGGAAGCTTAGATGTGACATCC 59.126 47.826 21.05 6.31 0.00 3.51
508 509 3.776969 TGGAAGCTTAGATGTGACATCCT 59.223 43.478 21.05 8.88 0.00 3.24
509 510 4.225942 TGGAAGCTTAGATGTGACATCCTT 59.774 41.667 21.05 16.28 0.00 3.36
510 511 5.425217 TGGAAGCTTAGATGTGACATCCTTA 59.575 40.000 21.05 6.22 0.00 2.69
511 512 6.070251 TGGAAGCTTAGATGTGACATCCTTAA 60.070 38.462 21.05 13.11 0.00 1.85
512 513 6.823689 GGAAGCTTAGATGTGACATCCTTAAA 59.176 38.462 21.05 10.18 0.00 1.52
513 514 7.336931 GGAAGCTTAGATGTGACATCCTTAAAA 59.663 37.037 21.05 8.00 0.00 1.52
514 515 8.635765 AAGCTTAGATGTGACATCCTTAAAAA 57.364 30.769 21.05 6.46 0.00 1.94
619 623 8.048534 AGATTTGGTTATCAGTTTGATGTCTG 57.951 34.615 1.94 0.00 37.70 3.51
639 645 5.023452 TCTGGTTCAAGAGCCTATCTACAA 58.977 41.667 4.58 0.00 37.23 2.41
736 869 2.550101 GGGATCCGGGTCGACGTAG 61.550 68.421 9.04 3.00 0.00 3.51
750 883 3.434641 TCGACGTAGAAACTGGACAGTAG 59.565 47.826 5.25 0.00 41.58 2.57
783 916 0.028505 CTAGCGCATGCATGGTGAAC 59.971 55.000 27.34 9.80 46.23 3.18
791 924 0.473755 TGCATGGTGAACTGGTGACT 59.526 50.000 0.00 0.00 0.00 3.41
882 1525 4.696455 TCATCCATGTACTGCACTATGTG 58.304 43.478 0.00 0.00 36.51 3.21
883 1526 4.162131 TCATCCATGTACTGCACTATGTGT 59.838 41.667 0.00 0.00 35.75 3.72
890 1533 4.694982 TGTACTGCACTATGTGTTCCATTG 59.305 41.667 0.00 0.00 35.75 2.82
903 1549 5.239744 TGTGTTCCATTGCATACGTTAAACT 59.760 36.000 0.00 0.00 0.00 2.66
915 1561 7.646526 TGCATACGTTAAACTATAGTGCTACTG 59.353 37.037 6.06 0.00 0.00 2.74
1099 1745 5.178797 CAAATTAGGGTCGATCACTGAACT 58.821 41.667 0.00 0.00 0.00 3.01
1103 1749 4.657436 AGGGTCGATCACTGAACTAATC 57.343 45.455 0.00 0.00 0.00 1.75
1256 1902 2.502080 CGGAGCGTCGTGAGTGAC 60.502 66.667 0.00 0.00 35.49 3.67
1322 1968 2.353704 CCACTTCCATGACTGCTTCGTA 60.354 50.000 0.00 0.00 0.00 3.43
1372 2018 3.582780 CATGCTTCATCTATGCTCGCTA 58.417 45.455 0.00 0.00 0.00 4.26
1389 2035 6.088824 GCTCGCTATCCATTTAATTTGATGG 58.911 40.000 11.60 11.60 43.36 3.51
1392 2038 6.770303 TCGCTATCCATTTAATTTGATGGTGA 59.230 34.615 15.45 8.63 42.72 4.02
1630 2276 1.751927 CCCCTACTACGACGTGCCT 60.752 63.158 11.56 0.00 0.00 4.75
1952 2598 0.526662 CGGCGTCTACTTCAAGGAGT 59.473 55.000 0.00 0.00 0.00 3.85
2152 2798 0.817634 CCTGCAGGGTCGTCAACAAA 60.818 55.000 26.14 0.00 0.00 2.83
2216 2871 4.859629 AAATCAAATTAGCTCGACGGAC 57.140 40.909 0.00 0.00 0.00 4.79
2241 2896 3.124636 GGCACAATAACTACAGGAACACG 59.875 47.826 0.00 0.00 0.00 4.49
2283 2941 0.793250 TTGTCGTGTGTGTGTGTGTG 59.207 50.000 0.00 0.00 0.00 3.82
2284 2942 0.319986 TGTCGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
2285 2943 0.094558 GTCGTGTGTGTGTGTGTGTG 59.905 55.000 0.00 0.00 0.00 3.82
2286 2944 0.319986 TCGTGTGTGTGTGTGTGTGT 60.320 50.000 0.00 0.00 0.00 3.72
2287 2945 0.515127 CGTGTGTGTGTGTGTGTGTT 59.485 50.000 0.00 0.00 0.00 3.32
2288 2946 1.069568 CGTGTGTGTGTGTGTGTGTTT 60.070 47.619 0.00 0.00 0.00 2.83
2289 2947 2.315011 GTGTGTGTGTGTGTGTGTTTG 58.685 47.619 0.00 0.00 0.00 2.93
2290 2948 1.950216 TGTGTGTGTGTGTGTGTTTGT 59.050 42.857 0.00 0.00 0.00 2.83
2291 2949 2.287248 TGTGTGTGTGTGTGTGTTTGTG 60.287 45.455 0.00 0.00 0.00 3.33
2292 2950 1.950216 TGTGTGTGTGTGTGTTTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2293 2951 2.287248 TGTGTGTGTGTGTGTTTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2294 2952 1.950216 TGTGTGTGTGTGTTTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2295 2953 2.287248 TGTGTGTGTGTGTTTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2296 2954 1.950216 TGTGTGTGTGTTTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2297 2955 2.287248 TGTGTGTGTGTTTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2298 2956 1.950216 TGTGTGTGTTTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2299 2957 2.287248 TGTGTGTGTTTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2300 2958 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2301 2959 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2302 2960 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2303 2961 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
2304 2962 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
2314 2972 0.167908 GTGTGTGTGTGTGTGTGTGG 59.832 55.000 0.00 0.00 0.00 4.17
2327 2985 0.957888 TGTGTGGGTGTGTGTGTGTG 60.958 55.000 0.00 0.00 0.00 3.82
2346 3005 8.080417 TGTGTGTGACAGTACTTCTATAACTTC 58.920 37.037 0.00 0.00 0.00 3.01
2363 3022 0.380378 TTCTGAAGGTGTTGCGTTGC 59.620 50.000 0.00 0.00 0.00 4.17
2436 3096 8.190122 CAGCATGTAATAAGGTGAAATTAAGCA 58.810 33.333 0.00 0.00 32.85 3.91
2473 3133 6.927294 ATACAGGACATTTAAAGCAGTAGC 57.073 37.500 0.00 0.00 42.56 3.58
2501 3164 6.549061 TGTACTAGCAGTCGTGTAATACAAG 58.451 40.000 0.00 0.00 0.00 3.16
2554 3217 4.023137 CCATGAGTTGGGCCCAAG 57.977 61.111 37.99 24.26 42.33 3.61
2562 3225 2.434336 GAGTTGGGCCCAAGTTCTTTTT 59.566 45.455 39.28 17.69 39.43 1.94
2588 3251 7.725251 TGTTCTTCTTTGTGAAAAATAGGCAT 58.275 30.769 0.00 0.00 33.79 4.40
2627 3290 6.721571 TTCTAGAAAATCTCGTCGCATTTT 57.278 33.333 1.68 12.08 35.38 1.82
2628 3291 7.821595 TTCTAGAAAATCTCGTCGCATTTTA 57.178 32.000 1.68 1.86 33.31 1.52
2629 3292 8.420374 TTCTAGAAAATCTCGTCGCATTTTAT 57.580 30.769 1.68 11.86 33.31 1.40
2630 3293 8.420374 TCTAGAAAATCTCGTCGCATTTTATT 57.580 30.769 12.17 8.28 33.31 1.40
2631 3294 8.540492 TCTAGAAAATCTCGTCGCATTTTATTC 58.460 33.333 12.17 4.28 33.31 1.75
2632 3295 7.072177 AGAAAATCTCGTCGCATTTTATTCA 57.928 32.000 12.17 0.00 33.31 2.57
2659 3322 3.063452 CGATGTTTGGAGGGATTGTTACG 59.937 47.826 0.00 0.00 0.00 3.18
2662 3325 4.069304 TGTTTGGAGGGATTGTTACGAAG 58.931 43.478 0.00 0.00 0.00 3.79
2698 3361 3.600448 AGCCATACATGCCTACCAAAT 57.400 42.857 0.00 0.00 0.00 2.32
2699 3362 4.722526 AGCCATACATGCCTACCAAATA 57.277 40.909 0.00 0.00 0.00 1.40
2700 3363 4.398319 AGCCATACATGCCTACCAAATAC 58.602 43.478 0.00 0.00 0.00 1.89
2701 3364 4.104738 AGCCATACATGCCTACCAAATACT 59.895 41.667 0.00 0.00 0.00 2.12
2702 3365 4.455877 GCCATACATGCCTACCAAATACTC 59.544 45.833 0.00 0.00 0.00 2.59
2703 3366 5.003804 CCATACATGCCTACCAAATACTCC 58.996 45.833 0.00 0.00 0.00 3.85
2704 3367 3.577805 ACATGCCTACCAAATACTCCC 57.422 47.619 0.00 0.00 0.00 4.30
2705 3368 3.123273 ACATGCCTACCAAATACTCCCT 58.877 45.455 0.00 0.00 0.00 4.20
2706 3369 3.136626 ACATGCCTACCAAATACTCCCTC 59.863 47.826 0.00 0.00 0.00 4.30
2707 3370 2.124411 TGCCTACCAAATACTCCCTCC 58.876 52.381 0.00 0.00 0.00 4.30
2708 3371 1.070289 GCCTACCAAATACTCCCTCCG 59.930 57.143 0.00 0.00 0.00 4.63
2709 3372 2.395619 CCTACCAAATACTCCCTCCGT 58.604 52.381 0.00 0.00 0.00 4.69
2710 3373 2.770232 CCTACCAAATACTCCCTCCGTT 59.230 50.000 0.00 0.00 0.00 4.44
2711 3374 3.181468 CCTACCAAATACTCCCTCCGTTC 60.181 52.174 0.00 0.00 0.00 3.95
2712 3375 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
2713 3376 1.838077 CCAAATACTCCCTCCGTTCCT 59.162 52.381 0.00 0.00 0.00 3.36
2714 3377 3.036091 CCAAATACTCCCTCCGTTCCTA 58.964 50.000 0.00 0.00 0.00 2.94
2715 3378 3.453353 CCAAATACTCCCTCCGTTCCTAA 59.547 47.826 0.00 0.00 0.00 2.69
2716 3379 4.080751 CCAAATACTCCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
2717 3380 5.397559 CCAAATACTCCCTCCGTTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
2718 3381 6.183361 CCAAATACTCCCTCCGTTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
2719 3382 6.416631 AATACTCCCTCCGTTCCTAAATAC 57.583 41.667 0.00 0.00 0.00 1.89
2720 3383 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
2721 3384 4.359996 ACTCCCTCCGTTCCTAAATACTT 58.640 43.478 0.00 0.00 0.00 2.24
2722 3385 4.161754 ACTCCCTCCGTTCCTAAATACTTG 59.838 45.833 0.00 0.00 0.00 3.16
2723 3386 4.098894 TCCCTCCGTTCCTAAATACTTGT 58.901 43.478 0.00 0.00 0.00 3.16
2724 3387 4.161001 TCCCTCCGTTCCTAAATACTTGTC 59.839 45.833 0.00 0.00 0.00 3.18
2725 3388 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
2726 3389 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2727 3390 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2728 3391 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
2729 3392 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
2730 3393 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
2731 3394 8.587608 TCCGTTCCTAAATACTTGTCTTTCTAA 58.412 33.333 0.00 0.00 0.00 2.10
2732 3395 8.870879 CCGTTCCTAAATACTTGTCTTTCTAAG 58.129 37.037 0.00 0.00 0.00 2.18
2733 3396 8.381387 CGTTCCTAAATACTTGTCTTTCTAAGC 58.619 37.037 0.00 0.00 0.00 3.09
2734 3397 9.216117 GTTCCTAAATACTTGTCTTTCTAAGCA 57.784 33.333 0.00 0.00 0.00 3.91
2735 3398 9.959721 TTCCTAAATACTTGTCTTTCTAAGCAT 57.040 29.630 0.00 0.00 0.00 3.79
2736 3399 9.959721 TCCTAAATACTTGTCTTTCTAAGCATT 57.040 29.630 0.00 0.00 0.00 3.56
2741 3404 9.899226 AATACTTGTCTTTCTAAGCATTTCAAC 57.101 29.630 0.00 0.00 0.00 3.18
2742 3405 7.333528 ACTTGTCTTTCTAAGCATTTCAACA 57.666 32.000 0.00 0.00 0.00 3.33
2743 3406 7.771183 ACTTGTCTTTCTAAGCATTTCAACAA 58.229 30.769 0.00 0.00 0.00 2.83
2744 3407 8.250332 ACTTGTCTTTCTAAGCATTTCAACAAA 58.750 29.630 0.00 0.00 0.00 2.83
2745 3408 9.252962 CTTGTCTTTCTAAGCATTTCAACAAAT 57.747 29.630 0.00 0.00 31.91 2.32
2760 3423 6.968131 TCAACAAATGACTACATACAGAGC 57.032 37.500 0.00 0.00 35.50 4.09
2761 3424 6.463360 TCAACAAATGACTACATACAGAGCA 58.537 36.000 0.00 0.00 35.50 4.26
2762 3425 6.934083 TCAACAAATGACTACATACAGAGCAA 59.066 34.615 0.00 0.00 35.50 3.91
2763 3426 7.443879 TCAACAAATGACTACATACAGAGCAAA 59.556 33.333 0.00 0.00 35.50 3.68
2764 3427 7.744087 ACAAATGACTACATACAGAGCAAAA 57.256 32.000 0.00 0.00 35.50 2.44
2765 3428 8.340618 ACAAATGACTACATACAGAGCAAAAT 57.659 30.769 0.00 0.00 35.50 1.82
2766 3429 8.239314 ACAAATGACTACATACAGAGCAAAATG 58.761 33.333 0.00 0.00 35.50 2.32
2767 3430 8.453320 CAAATGACTACATACAGAGCAAAATGA 58.547 33.333 0.00 0.00 35.50 2.57
2768 3431 7.783090 ATGACTACATACAGAGCAAAATGAG 57.217 36.000 0.00 0.00 34.71 2.90
2769 3432 6.701340 TGACTACATACAGAGCAAAATGAGT 58.299 36.000 0.00 0.00 0.00 3.41
2770 3433 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
2771 3434 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2772 3435 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2773 3436 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2774 3437 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2775 3438 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2776 3439 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2777 3440 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2778 3441 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2779 3442 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2822 3485 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
2823 3486 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
2824 3487 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
2825 3488 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
2826 3489 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
2827 3490 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
2828 3491 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
2829 3492 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
2856 3519 8.947115 AGAAAGACAAATATTTAAGAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
2857 3520 7.625828 AAGACAAATATTTAAGAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
2858 3521 6.954232 AGACAAATATTTAAGAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
2859 3522 7.048512 AGACAAATATTTAAGAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
2860 3523 6.718294 ACAAATATTTAAGAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
2861 3524 7.854337 ACAAATATTTAAGAACGGAGGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
2862 3525 7.767659 ACAAATATTTAAGAACGGAGGGAGTAC 59.232 37.037 0.00 0.00 0.00 2.73
2863 3526 7.427989 AATATTTAAGAACGGAGGGAGTACA 57.572 36.000 0.00 0.00 0.00 2.90
2864 3527 5.750352 ATTTAAGAACGGAGGGAGTACAA 57.250 39.130 0.00 0.00 0.00 2.41
2865 3528 5.750352 TTTAAGAACGGAGGGAGTACAAT 57.250 39.130 0.00 0.00 0.00 2.71
2866 3529 3.611766 AAGAACGGAGGGAGTACAATG 57.388 47.619 0.00 0.00 0.00 2.82
2867 3530 2.816411 AGAACGGAGGGAGTACAATGA 58.184 47.619 0.00 0.00 0.00 2.57
2868 3531 3.170717 AGAACGGAGGGAGTACAATGAA 58.829 45.455 0.00 0.00 0.00 2.57
2869 3532 3.581332 AGAACGGAGGGAGTACAATGAAA 59.419 43.478 0.00 0.00 0.00 2.69
2870 3533 4.041198 AGAACGGAGGGAGTACAATGAAAA 59.959 41.667 0.00 0.00 0.00 2.29
2871 3534 4.569719 ACGGAGGGAGTACAATGAAAAT 57.430 40.909 0.00 0.00 0.00 1.82
2872 3535 4.261801 ACGGAGGGAGTACAATGAAAATG 58.738 43.478 0.00 0.00 0.00 2.32
2873 3536 4.261801 CGGAGGGAGTACAATGAAAATGT 58.738 43.478 0.00 0.00 34.81 2.71
2874 3537 5.046159 ACGGAGGGAGTACAATGAAAATGTA 60.046 40.000 0.00 0.00 32.27 2.29
2875 3538 5.523916 CGGAGGGAGTACAATGAAAATGTAG 59.476 44.000 0.00 0.00 34.14 2.74
2876 3539 5.297029 GGAGGGAGTACAATGAAAATGTAGC 59.703 44.000 0.00 0.00 34.14 3.58
2877 3540 6.067217 AGGGAGTACAATGAAAATGTAGCT 57.933 37.500 0.00 0.00 34.14 3.32
2878 3541 7.195374 AGGGAGTACAATGAAAATGTAGCTA 57.805 36.000 0.00 0.00 34.14 3.32
2879 3542 7.630082 AGGGAGTACAATGAAAATGTAGCTAA 58.370 34.615 0.00 0.00 34.14 3.09
2880 3543 8.107095 AGGGAGTACAATGAAAATGTAGCTAAA 58.893 33.333 0.00 0.00 34.14 1.85
2881 3544 8.182227 GGGAGTACAATGAAAATGTAGCTAAAC 58.818 37.037 0.00 0.00 34.14 2.01
2882 3545 8.947115 GGAGTACAATGAAAATGTAGCTAAACT 58.053 33.333 0.00 0.00 34.14 2.66
2888 3551 9.884465 CAATGAAAATGTAGCTAAACTATAGGC 57.116 33.333 4.43 0.00 32.15 3.93
2889 3552 9.853177 AATGAAAATGTAGCTAAACTATAGGCT 57.147 29.630 4.43 5.63 38.62 4.58
2890 3553 9.853177 ATGAAAATGTAGCTAAACTATAGGCTT 57.147 29.630 4.43 0.00 36.40 4.35
2891 3554 9.326413 TGAAAATGTAGCTAAACTATAGGCTTC 57.674 33.333 4.43 2.02 36.40 3.86
2892 3555 9.326413 GAAAATGTAGCTAAACTATAGGCTTCA 57.674 33.333 4.43 7.47 36.76 3.02
2893 3556 9.681062 AAAATGTAGCTAAACTATAGGCTTCAA 57.319 29.630 4.43 0.00 36.17 2.69
2894 3557 9.681062 AAATGTAGCTAAACTATAGGCTTCAAA 57.319 29.630 4.43 0.00 36.17 2.69
2895 3558 9.681062 AATGTAGCTAAACTATAGGCTTCAAAA 57.319 29.630 4.43 0.00 36.17 2.44
2896 3559 9.681062 ATGTAGCTAAACTATAGGCTTCAAAAA 57.319 29.630 4.43 0.00 36.17 1.94
2935 3598 9.261180 TCAAATTTATAAACCAAATTGCGTTCA 57.739 25.926 0.00 0.00 36.10 3.18
2936 3599 9.869844 CAAATTTATAAACCAAATTGCGTTCAA 57.130 25.926 0.00 0.00 36.10 2.69
2938 3601 6.698359 TTATAAACCAAATTGCGTTCAAGC 57.302 33.333 1.49 0.00 35.37 4.01
2939 3602 2.593346 AACCAAATTGCGTTCAAGCA 57.407 40.000 0.00 0.00 46.54 3.91
2946 3609 3.201342 TGCGTTCAAGCACTCTCTC 57.799 52.632 0.00 0.00 42.92 3.20
2947 3610 0.319900 TGCGTTCAAGCACTCTCTCC 60.320 55.000 0.00 0.00 42.92 3.71
2948 3611 1.016653 GCGTTCAAGCACTCTCTCCC 61.017 60.000 0.00 0.00 37.05 4.30
2949 3612 0.318441 CGTTCAAGCACTCTCTCCCA 59.682 55.000 0.00 0.00 0.00 4.37
2950 3613 1.671261 CGTTCAAGCACTCTCTCCCAG 60.671 57.143 0.00 0.00 0.00 4.45
2951 3614 1.346068 GTTCAAGCACTCTCTCCCAGT 59.654 52.381 0.00 0.00 0.00 4.00
2952 3615 0.972134 TCAAGCACTCTCTCCCAGTG 59.028 55.000 0.00 0.00 43.66 3.66
2953 3616 0.972134 CAAGCACTCTCTCCCAGTGA 59.028 55.000 4.00 0.00 43.54 3.41
2954 3617 1.345741 CAAGCACTCTCTCCCAGTGAA 59.654 52.381 4.00 0.00 43.54 3.18
2955 3618 0.972883 AGCACTCTCTCCCAGTGAAC 59.027 55.000 4.00 0.00 43.54 3.18
2956 3619 0.681733 GCACTCTCTCCCAGTGAACA 59.318 55.000 4.00 0.00 43.54 3.18
2957 3620 1.277557 GCACTCTCTCCCAGTGAACAT 59.722 52.381 4.00 0.00 43.54 2.71
2958 3621 2.934364 GCACTCTCTCCCAGTGAACATG 60.934 54.545 4.00 0.00 43.54 3.21
2959 3622 2.301296 CACTCTCTCCCAGTGAACATGT 59.699 50.000 0.00 0.00 43.54 3.21
2960 3623 2.301296 ACTCTCTCCCAGTGAACATGTG 59.699 50.000 0.00 0.00 0.00 3.21
2961 3624 2.301296 CTCTCTCCCAGTGAACATGTGT 59.699 50.000 0.00 0.00 0.00 3.72
2962 3625 2.300152 TCTCTCCCAGTGAACATGTGTC 59.700 50.000 0.00 0.00 0.00 3.67
2963 3626 1.347707 TCTCCCAGTGAACATGTGTCC 59.652 52.381 0.00 0.00 0.00 4.02
2964 3627 1.349026 CTCCCAGTGAACATGTGTCCT 59.651 52.381 0.00 0.00 0.00 3.85
2965 3628 1.072173 TCCCAGTGAACATGTGTCCTG 59.928 52.381 0.00 5.54 0.00 3.86
2966 3629 1.072173 CCCAGTGAACATGTGTCCTGA 59.928 52.381 16.36 0.00 0.00 3.86
2967 3630 2.146342 CCAGTGAACATGTGTCCTGAC 58.854 52.381 16.36 0.00 0.00 3.51
2968 3631 2.485302 CCAGTGAACATGTGTCCTGACA 60.485 50.000 16.36 0.00 39.32 3.58
2969 3632 3.205338 CAGTGAACATGTGTCCTGACAA 58.795 45.455 0.00 0.00 43.77 3.18
2970 3633 3.817084 CAGTGAACATGTGTCCTGACAAT 59.183 43.478 0.00 0.00 43.77 2.71
2971 3634 4.276678 CAGTGAACATGTGTCCTGACAATT 59.723 41.667 0.00 0.00 43.77 2.32
2972 3635 4.276678 AGTGAACATGTGTCCTGACAATTG 59.723 41.667 3.24 3.24 43.77 2.32
2973 3636 4.275689 GTGAACATGTGTCCTGACAATTGA 59.724 41.667 13.59 0.00 43.77 2.57
2974 3637 4.275689 TGAACATGTGTCCTGACAATTGAC 59.724 41.667 13.59 6.72 43.77 3.18
2975 3638 3.149196 ACATGTGTCCTGACAATTGACC 58.851 45.455 13.59 4.08 43.77 4.02
2976 3639 1.877637 TGTGTCCTGACAATTGACCG 58.122 50.000 13.59 2.11 43.77 4.79
2977 3640 0.517316 GTGTCCTGACAATTGACCGC 59.483 55.000 13.59 0.00 43.77 5.68
2978 3641 0.396435 TGTCCTGACAATTGACCGCT 59.604 50.000 13.59 0.00 38.56 5.52
2979 3642 0.798776 GTCCTGACAATTGACCGCTG 59.201 55.000 13.59 2.91 0.00 5.18
2980 3643 0.684535 TCCTGACAATTGACCGCTGA 59.315 50.000 13.59 0.00 0.00 4.26
2981 3644 0.798776 CCTGACAATTGACCGCTGAC 59.201 55.000 13.59 0.00 0.00 3.51
2982 3645 1.609061 CCTGACAATTGACCGCTGACT 60.609 52.381 13.59 0.00 0.00 3.41
2983 3646 1.462283 CTGACAATTGACCGCTGACTG 59.538 52.381 13.59 0.00 0.00 3.51
2984 3647 1.202639 TGACAATTGACCGCTGACTGT 60.203 47.619 13.59 0.00 0.00 3.55
2985 3648 1.873591 GACAATTGACCGCTGACTGTT 59.126 47.619 13.59 0.00 0.00 3.16
2986 3649 1.603802 ACAATTGACCGCTGACTGTTG 59.396 47.619 13.59 0.00 0.00 3.33
2987 3650 1.872952 CAATTGACCGCTGACTGTTGA 59.127 47.619 0.00 0.00 0.00 3.18
2988 3651 1.512926 ATTGACCGCTGACTGTTGAC 58.487 50.000 0.00 0.00 0.00 3.18
2989 3652 0.464036 TTGACCGCTGACTGTTGACT 59.536 50.000 0.00 0.00 0.00 3.41
2990 3653 0.464036 TGACCGCTGACTGTTGACTT 59.536 50.000 0.00 0.00 0.00 3.01
2991 3654 1.134521 TGACCGCTGACTGTTGACTTT 60.135 47.619 0.00 0.00 0.00 2.66
2992 3655 1.940613 GACCGCTGACTGTTGACTTTT 59.059 47.619 0.00 0.00 0.00 2.27
2993 3656 3.128349 GACCGCTGACTGTTGACTTTTA 58.872 45.455 0.00 0.00 0.00 1.52
2994 3657 3.537580 ACCGCTGACTGTTGACTTTTAA 58.462 40.909 0.00 0.00 0.00 1.52
2995 3658 3.942748 ACCGCTGACTGTTGACTTTTAAA 59.057 39.130 0.00 0.00 0.00 1.52
2996 3659 4.396790 ACCGCTGACTGTTGACTTTTAAAA 59.603 37.500 0.00 0.00 0.00 1.52
2997 3660 4.970003 CCGCTGACTGTTGACTTTTAAAAG 59.030 41.667 23.38 23.38 41.73 2.27
2998 3661 4.437820 CGCTGACTGTTGACTTTTAAAAGC 59.562 41.667 24.60 17.94 39.63 3.51
2999 3662 5.339990 GCTGACTGTTGACTTTTAAAAGCA 58.660 37.500 24.60 19.91 39.63 3.91
3000 3663 5.230097 GCTGACTGTTGACTTTTAAAAGCAC 59.770 40.000 24.60 18.82 39.63 4.40
3001 3664 6.260870 TGACTGTTGACTTTTAAAAGCACA 57.739 33.333 24.60 21.58 39.63 4.57
3002 3665 6.862209 TGACTGTTGACTTTTAAAAGCACAT 58.138 32.000 24.60 14.76 39.63 3.21
3003 3666 6.751425 TGACTGTTGACTTTTAAAAGCACATG 59.249 34.615 24.60 18.37 39.63 3.21
3004 3667 6.862209 ACTGTTGACTTTTAAAAGCACATGA 58.138 32.000 24.60 13.83 39.63 3.07
3005 3668 6.751888 ACTGTTGACTTTTAAAAGCACATGAC 59.248 34.615 24.60 19.17 39.63 3.06
3006 3669 6.862209 TGTTGACTTTTAAAAGCACATGACT 58.138 32.000 24.60 5.61 39.63 3.41
3007 3670 7.319646 TGTTGACTTTTAAAAGCACATGACTT 58.680 30.769 24.60 4.94 39.63 3.01
3008 3671 7.816995 TGTTGACTTTTAAAAGCACATGACTTT 59.183 29.630 24.60 6.18 39.63 2.66
3009 3672 8.655970 GTTGACTTTTAAAAGCACATGACTTTT 58.344 29.630 24.60 24.24 46.30 2.27
3010 3673 8.770438 TGACTTTTAAAAGCACATGACTTTTT 57.230 26.923 24.60 17.51 43.08 1.94
3089 3752 9.412460 AGTTGAAATATATTTGCAGATTCAGGA 57.588 29.630 15.39 0.00 0.00 3.86
3113 3776 5.613358 AAAATCGTGGACTTGAAGATGTC 57.387 39.130 0.00 0.00 0.00 3.06
3114 3777 4.543590 AATCGTGGACTTGAAGATGTCT 57.456 40.909 0.00 0.00 34.01 3.41
3115 3778 5.661056 AATCGTGGACTTGAAGATGTCTA 57.339 39.130 0.00 0.00 34.01 2.59
3116 3779 4.436242 TCGTGGACTTGAAGATGTCTAC 57.564 45.455 0.00 0.00 39.98 2.59
3118 3781 4.436242 GTGGACTTGAAGATGTCTACGA 57.564 45.455 0.00 0.00 35.60 3.43
3119 3782 4.806330 GTGGACTTGAAGATGTCTACGAA 58.194 43.478 0.00 0.00 35.60 3.85
3120 3783 5.411781 GTGGACTTGAAGATGTCTACGAAT 58.588 41.667 0.00 0.00 35.60 3.34
3121 3784 5.869888 GTGGACTTGAAGATGTCTACGAATT 59.130 40.000 0.00 0.00 35.60 2.17
3122 3785 6.369065 GTGGACTTGAAGATGTCTACGAATTT 59.631 38.462 0.00 0.00 35.60 1.82
3123 3786 6.934645 TGGACTTGAAGATGTCTACGAATTTT 59.065 34.615 0.00 0.00 34.01 1.82
3124 3787 8.092068 TGGACTTGAAGATGTCTACGAATTTTA 58.908 33.333 0.00 0.00 34.01 1.52
3125 3788 8.932791 GGACTTGAAGATGTCTACGAATTTTAA 58.067 33.333 0.00 0.00 34.01 1.52
3126 3789 9.742552 GACTTGAAGATGTCTACGAATTTTAAC 57.257 33.333 0.00 0.00 0.00 2.01
3127 3790 9.268268 ACTTGAAGATGTCTACGAATTTTAACA 57.732 29.630 0.00 0.00 0.00 2.41
3133 3796 9.878599 AGATGTCTACGAATTTTAACAAAGTTG 57.121 29.630 0.00 0.00 0.00 3.16
3134 3797 9.872757 GATGTCTACGAATTTTAACAAAGTTGA 57.127 29.630 0.00 0.00 0.00 3.18
3136 3799 9.658475 TGTCTACGAATTTTAACAAAGTTGATG 57.342 29.630 0.00 0.00 0.00 3.07
3137 3800 9.872757 GTCTACGAATTTTAACAAAGTTGATGA 57.127 29.630 0.00 0.00 0.00 2.92
3209 3872 7.405469 TGTTCATGGATTTGAAAAATGTTCG 57.595 32.000 0.00 0.00 37.36 3.95
3210 3873 6.983307 TGTTCATGGATTTGAAAAATGTTCGT 59.017 30.769 0.00 0.00 37.36 3.85
3211 3874 8.138074 TGTTCATGGATTTGAAAAATGTTCGTA 58.862 29.630 0.00 0.00 37.36 3.43
3212 3875 8.973378 GTTCATGGATTTGAAAAATGTTCGTAA 58.027 29.630 0.00 0.00 37.36 3.18
3213 3876 9.534565 TTCATGGATTTGAAAAATGTTCGTAAA 57.465 25.926 0.00 0.00 32.82 2.01
3214 3877 9.703892 TCATGGATTTGAAAAATGTTCGTAAAT 57.296 25.926 0.00 0.00 0.00 1.40
3228 3891 7.758613 TGTTCGTAAATTTGAAAAGGTTTCC 57.241 32.000 0.00 0.00 0.00 3.13
3229 3892 7.548967 TGTTCGTAAATTTGAAAAGGTTTCCT 58.451 30.769 0.00 0.00 33.87 3.36
3230 3893 7.489757 TGTTCGTAAATTTGAAAAGGTTTCCTG 59.510 33.333 0.00 0.00 32.13 3.86
3231 3894 6.508777 TCGTAAATTTGAAAAGGTTTCCTGG 58.491 36.000 0.00 0.00 32.13 4.45
3232 3895 6.097129 TCGTAAATTTGAAAAGGTTTCCTGGT 59.903 34.615 0.00 0.00 32.13 4.00
3233 3896 6.759356 CGTAAATTTGAAAAGGTTTCCTGGTT 59.241 34.615 0.00 0.00 32.13 3.67
3234 3897 7.921745 CGTAAATTTGAAAAGGTTTCCTGGTTA 59.078 33.333 0.00 0.00 32.13 2.85
3235 3898 9.256477 GTAAATTTGAAAAGGTTTCCTGGTTAG 57.744 33.333 0.00 0.00 32.13 2.34
3236 3899 7.669089 AATTTGAAAAGGTTTCCTGGTTAGA 57.331 32.000 0.00 0.00 32.13 2.10
3237 3900 7.669089 ATTTGAAAAGGTTTCCTGGTTAGAA 57.331 32.000 0.00 0.00 32.13 2.10
3238 3901 7.483580 TTTGAAAAGGTTTCCTGGTTAGAAA 57.516 32.000 0.00 0.00 32.13 2.52
3239 3902 7.483580 TTGAAAAGGTTTCCTGGTTAGAAAA 57.516 32.000 0.00 0.00 35.13 2.29
3240 3903 7.669089 TGAAAAGGTTTCCTGGTTAGAAAAT 57.331 32.000 0.00 0.00 35.13 1.82
3241 3904 7.496747 TGAAAAGGTTTCCTGGTTAGAAAATG 58.503 34.615 0.00 0.00 35.13 2.32
3242 3905 7.125053 TGAAAAGGTTTCCTGGTTAGAAAATGT 59.875 33.333 0.00 0.00 35.13 2.71
3243 3906 7.432148 AAAGGTTTCCTGGTTAGAAAATGTT 57.568 32.000 0.00 0.00 35.13 2.71
3244 3907 6.650427 AGGTTTCCTGGTTAGAAAATGTTC 57.350 37.500 0.00 0.00 35.13 3.18
3245 3908 6.133356 AGGTTTCCTGGTTAGAAAATGTTCA 58.867 36.000 0.00 0.00 35.13 3.18
3246 3909 6.040504 AGGTTTCCTGGTTAGAAAATGTTCAC 59.959 38.462 0.00 0.00 35.13 3.18
3247 3910 6.183360 GGTTTCCTGGTTAGAAAATGTTCACA 60.183 38.462 0.00 0.00 35.13 3.58
3248 3911 7.262048 GTTTCCTGGTTAGAAAATGTTCACAA 58.738 34.615 0.00 0.00 35.13 3.33
3249 3912 7.411486 TTCCTGGTTAGAAAATGTTCACAAA 57.589 32.000 0.00 0.00 36.09 2.83
3250 3913 7.411486 TCCTGGTTAGAAAATGTTCACAAAA 57.589 32.000 0.00 0.00 36.09 2.44
3251 3914 7.841956 TCCTGGTTAGAAAATGTTCACAAAAA 58.158 30.769 0.00 0.00 36.09 1.94
3252 3915 8.482128 TCCTGGTTAGAAAATGTTCACAAAAAT 58.518 29.630 0.00 0.00 36.09 1.82
3253 3916 9.108284 CCTGGTTAGAAAATGTTCACAAAAATT 57.892 29.630 0.00 0.00 36.09 1.82
3254 3917 9.919348 CTGGTTAGAAAATGTTCACAAAAATTG 57.081 29.630 0.00 0.00 36.09 2.32
3255 3918 9.658799 TGGTTAGAAAATGTTCACAAAAATTGA 57.341 25.926 0.00 0.00 36.09 2.57
3266 3929 9.050601 TGTTCACAAAAATTGAAGAAAAACTGT 57.949 25.926 0.00 0.00 33.63 3.55
3267 3930 9.316859 GTTCACAAAAATTGAAGAAAAACTGTG 57.683 29.630 0.00 0.00 33.63 3.66
3268 3931 8.824159 TCACAAAAATTGAAGAAAAACTGTGA 57.176 26.923 0.00 0.00 37.65 3.58
3269 3932 9.434420 TCACAAAAATTGAAGAAAAACTGTGAT 57.566 25.926 0.00 0.00 35.72 3.06
3270 3933 9.480538 CACAAAAATTGAAGAAAAACTGTGATG 57.519 29.630 0.00 0.00 33.89 3.07
3271 3934 9.218440 ACAAAAATTGAAGAAAAACTGTGATGT 57.782 25.926 0.00 0.00 0.00 3.06
3274 3937 9.434420 AAAATTGAAGAAAAACTGTGATGTTCA 57.566 25.926 0.00 0.00 0.00 3.18
3275 3938 9.434420 AAATTGAAGAAAAACTGTGATGTTCAA 57.566 25.926 12.21 12.21 37.15 2.69
3276 3939 9.434420 AATTGAAGAAAAACTGTGATGTTCAAA 57.566 25.926 13.20 3.23 36.54 2.69
3277 3940 8.824159 TTGAAGAAAAACTGTGATGTTCAAAA 57.176 26.923 9.20 0.00 31.52 2.44
3278 3941 8.824159 TGAAGAAAAACTGTGATGTTCAAAAA 57.176 26.923 0.00 0.00 0.00 1.94
3362 4025 3.513680 AAAAGACAAACAAACCCGACC 57.486 42.857 0.00 0.00 0.00 4.79
3363 4026 2.131776 AAGACAAACAAACCCGACCA 57.868 45.000 0.00 0.00 0.00 4.02
3364 4027 1.675552 AGACAAACAAACCCGACCAG 58.324 50.000 0.00 0.00 0.00 4.00
3365 4028 0.666374 GACAAACAAACCCGACCAGG 59.334 55.000 0.00 0.00 40.63 4.45
3366 4029 0.256464 ACAAACAAACCCGACCAGGA 59.744 50.000 0.00 0.00 45.00 3.86
3367 4030 1.341187 ACAAACAAACCCGACCAGGAA 60.341 47.619 0.00 0.00 45.00 3.36
3368 4031 1.751924 CAAACAAACCCGACCAGGAAA 59.248 47.619 0.00 0.00 45.00 3.13
3369 4032 2.146920 AACAAACCCGACCAGGAAAA 57.853 45.000 0.00 0.00 45.00 2.29
3370 4033 1.395635 ACAAACCCGACCAGGAAAAC 58.604 50.000 0.00 0.00 45.00 2.43
3371 4034 0.671796 CAAACCCGACCAGGAAAACC 59.328 55.000 0.00 0.00 45.00 3.27
3372 4035 0.820482 AAACCCGACCAGGAAAACCG 60.820 55.000 0.00 0.00 45.00 4.44
3373 4036 1.986632 AACCCGACCAGGAAAACCGT 61.987 55.000 0.00 0.00 45.00 4.83
3374 4037 1.670083 CCCGACCAGGAAAACCGTC 60.670 63.158 0.00 0.00 45.00 4.79
3375 4038 1.670083 CCGACCAGGAAAACCGTCC 60.670 63.158 0.00 0.00 45.00 4.79
3376 4039 1.670083 CGACCAGGAAAACCGTCCC 60.670 63.158 0.00 0.00 38.59 4.46
3377 4040 1.452801 GACCAGGAAAACCGTCCCA 59.547 57.895 0.00 0.00 38.59 4.37
3378 4041 0.179012 GACCAGGAAAACCGTCCCAA 60.179 55.000 0.00 0.00 38.59 4.12
3379 4042 0.259356 ACCAGGAAAACCGTCCCAAA 59.741 50.000 0.00 0.00 38.59 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.619654 CCATTTCTGGACAGTGCCAA 58.380 50.000 7.54 0.00 46.37 4.52
78 79 0.323178 TGACCTACAGACGACCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
90 91 2.092914 CCTCACCCCATTCTTGACCTAC 60.093 54.545 0.00 0.00 0.00 3.18
107 108 5.293643 TGGAGGTATAAAATCCTTCCCTCA 58.706 41.667 0.00 0.00 38.98 3.86
133 134 3.664025 TTGATCACCGAGCAGCCCG 62.664 63.158 0.00 0.00 0.00 6.13
138 139 1.296392 CACCCTTGATCACCGAGCA 59.704 57.895 0.00 0.00 0.00 4.26
184 185 0.037326 AAGTGCGTGACATGACGGAT 60.037 50.000 0.00 0.00 41.92 4.18
189 190 3.462982 ACTAAACAAGTGCGTGACATGA 58.537 40.909 0.00 0.00 36.93 3.07
203 204 0.755698 TGCGGGCCCAAAACTAAACA 60.756 50.000 24.92 1.88 0.00 2.83
205 206 0.892063 GATGCGGGCCCAAAACTAAA 59.108 50.000 24.92 0.00 0.00 1.85
239 240 2.093973 CACAGGAACTATGCTTCGGTCT 60.094 50.000 0.00 0.00 36.02 3.85
257 258 1.982395 CTCAGGAGGGCGGTACACA 60.982 63.158 0.00 0.00 0.00 3.72
271 272 2.436417 CCAACATAACACCACCCTCAG 58.564 52.381 0.00 0.00 0.00 3.35
280 281 4.150451 GCTCAAAATGTGCCAACATAACAC 59.850 41.667 0.00 0.00 46.58 3.32
353 354 3.629142 ATCCTAGACGGACCCAAAAAG 57.371 47.619 0.00 0.00 46.80 2.27
354 355 3.839490 TGTATCCTAGACGGACCCAAAAA 59.161 43.478 0.00 0.00 46.80 1.94
355 356 3.443052 TGTATCCTAGACGGACCCAAAA 58.557 45.455 0.00 0.00 46.80 2.44
356 357 3.104519 TGTATCCTAGACGGACCCAAA 57.895 47.619 0.00 0.00 46.80 3.28
357 358 2.832643 TGTATCCTAGACGGACCCAA 57.167 50.000 0.00 0.00 46.80 4.12
358 359 2.445905 AGATGTATCCTAGACGGACCCA 59.554 50.000 0.00 0.00 46.80 4.51
359 360 3.157750 AGATGTATCCTAGACGGACCC 57.842 52.381 0.00 0.00 46.80 4.46
360 361 5.163281 TCTAGATGTATCCTAGACGGACC 57.837 47.826 0.00 0.00 46.80 4.46
361 362 6.671614 CATCTAGATGTATCCTAGACGGAC 57.328 45.833 22.42 0.00 43.57 4.79
390 391 9.967346 GACATTAGCTTAGATGTGACATAACTA 57.033 33.333 12.89 0.00 36.67 2.24
391 392 7.928706 GGACATTAGCTTAGATGTGACATAACT 59.071 37.037 12.89 0.00 36.67 2.24
392 393 7.710907 TGGACATTAGCTTAGATGTGACATAAC 59.289 37.037 12.89 0.00 36.67 1.89
393 394 7.791029 TGGACATTAGCTTAGATGTGACATAA 58.209 34.615 12.89 0.00 36.67 1.90
394 395 7.360113 TGGACATTAGCTTAGATGTGACATA 57.640 36.000 12.89 0.00 36.67 2.29
395 396 6.239217 TGGACATTAGCTTAGATGTGACAT 57.761 37.500 12.89 0.00 36.67 3.06
396 397 5.675684 TGGACATTAGCTTAGATGTGACA 57.324 39.130 12.89 9.63 36.67 3.58
397 398 6.989169 AGAATGGACATTAGCTTAGATGTGAC 59.011 38.462 12.89 7.78 36.67 3.67
398 399 6.988580 CAGAATGGACATTAGCTTAGATGTGA 59.011 38.462 12.89 2.97 36.67 3.58
399 400 6.765036 ACAGAATGGACATTAGCTTAGATGTG 59.235 38.462 12.89 2.69 43.62 3.21
400 401 6.893583 ACAGAATGGACATTAGCTTAGATGT 58.106 36.000 9.09 9.09 43.62 3.06
401 402 7.798596 AACAGAATGGACATTAGCTTAGATG 57.201 36.000 0.00 0.00 43.62 2.90
402 403 7.831193 ACAAACAGAATGGACATTAGCTTAGAT 59.169 33.333 0.00 0.00 43.62 1.98
403 404 7.119699 CACAAACAGAATGGACATTAGCTTAGA 59.880 37.037 0.00 0.00 43.62 2.10
404 405 7.246311 CACAAACAGAATGGACATTAGCTTAG 58.754 38.462 0.00 0.00 43.62 2.18
405 406 6.150976 CCACAAACAGAATGGACATTAGCTTA 59.849 38.462 0.00 0.00 43.62 3.09
406 407 5.047802 CCACAAACAGAATGGACATTAGCTT 60.048 40.000 0.00 0.00 43.62 3.74
407 408 4.460382 CCACAAACAGAATGGACATTAGCT 59.540 41.667 0.00 0.00 43.62 3.32
408 409 4.218417 ACCACAAACAGAATGGACATTAGC 59.782 41.667 0.00 0.00 43.62 3.09
409 410 5.707298 AGACCACAAACAGAATGGACATTAG 59.293 40.000 0.00 0.00 43.62 1.73
410 411 5.630121 AGACCACAAACAGAATGGACATTA 58.370 37.500 0.00 0.00 43.62 1.90
411 412 4.473444 AGACCACAAACAGAATGGACATT 58.527 39.130 0.00 0.00 43.62 2.71
412 413 4.104383 AGACCACAAACAGAATGGACAT 57.896 40.909 0.00 0.00 43.62 3.06
413 414 3.576078 AGACCACAAACAGAATGGACA 57.424 42.857 0.00 0.00 43.62 4.02
414 415 6.575162 AAATAGACCACAAACAGAATGGAC 57.425 37.500 0.00 0.00 43.62 4.02
415 416 7.595819 AAAAATAGACCACAAACAGAATGGA 57.404 32.000 0.00 0.00 43.62 3.41
454 455 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
455 456 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
461 462 9.518906 CACAAATATATAATGCAGCAACAAGAA 57.481 29.630 0.00 0.00 0.00 2.52
462 463 8.136800 CCACAAATATATAATGCAGCAACAAGA 58.863 33.333 0.00 0.00 0.00 3.02
463 464 8.136800 TCCACAAATATATAATGCAGCAACAAG 58.863 33.333 0.00 0.00 0.00 3.16
464 465 8.005192 TCCACAAATATATAATGCAGCAACAA 57.995 30.769 0.00 0.00 0.00 2.83
465 466 7.579761 TCCACAAATATATAATGCAGCAACA 57.420 32.000 0.00 0.00 0.00 3.33
466 467 7.115378 GCTTCCACAAATATATAATGCAGCAAC 59.885 37.037 0.00 0.00 0.00 4.17
467 468 7.014518 AGCTTCCACAAATATATAATGCAGCAA 59.985 33.333 0.00 0.00 0.00 3.91
468 469 6.491062 AGCTTCCACAAATATATAATGCAGCA 59.509 34.615 0.00 0.00 0.00 4.41
469 470 6.917533 AGCTTCCACAAATATATAATGCAGC 58.082 36.000 0.00 0.00 0.00 5.25
471 472 9.791801 TCTAAGCTTCCACAAATATATAATGCA 57.208 29.630 0.00 0.00 0.00 3.96
477 478 9.277783 GTCACATCTAAGCTTCCACAAATATAT 57.722 33.333 0.00 0.00 0.00 0.86
478 479 8.264347 TGTCACATCTAAGCTTCCACAAATATA 58.736 33.333 0.00 0.00 0.00 0.86
479 480 7.112122 TGTCACATCTAAGCTTCCACAAATAT 58.888 34.615 0.00 0.00 0.00 1.28
480 481 6.472016 TGTCACATCTAAGCTTCCACAAATA 58.528 36.000 0.00 0.00 0.00 1.40
481 482 5.316167 TGTCACATCTAAGCTTCCACAAAT 58.684 37.500 0.00 0.00 0.00 2.32
482 483 4.713553 TGTCACATCTAAGCTTCCACAAA 58.286 39.130 0.00 0.00 0.00 2.83
483 484 4.350368 TGTCACATCTAAGCTTCCACAA 57.650 40.909 0.00 0.00 0.00 3.33
484 485 4.507710 GATGTCACATCTAAGCTTCCACA 58.492 43.478 10.81 0.00 0.00 4.17
485 486 3.873952 GGATGTCACATCTAAGCTTCCAC 59.126 47.826 17.46 0.00 0.00 4.02
486 487 3.776969 AGGATGTCACATCTAAGCTTCCA 59.223 43.478 17.46 0.00 0.00 3.53
487 488 4.414337 AGGATGTCACATCTAAGCTTCC 57.586 45.455 17.46 0.00 0.00 3.46
488 489 7.849804 TTTAAGGATGTCACATCTAAGCTTC 57.150 36.000 17.46 0.00 0.00 3.86
489 490 8.635765 TTTTTAAGGATGTCACATCTAAGCTT 57.364 30.769 17.46 13.56 0.00 3.74
619 623 5.938125 TGTTTTGTAGATAGGCTCTTGAACC 59.062 40.000 0.00 0.00 35.28 3.62
736 869 6.434018 ACGAGTATACTACTGTCCAGTTTC 57.566 41.667 5.09 0.00 42.54 2.78
750 883 2.545526 TGCGCTAGTGGTACGAGTATAC 59.454 50.000 9.73 0.00 0.00 1.47
791 924 2.297880 TCAAAAATCTCGGACTCGACCA 59.702 45.455 0.00 0.00 40.88 4.02
801 1442 4.093556 GGTCTGCCTAAGTCAAAAATCTCG 59.906 45.833 0.00 0.00 0.00 4.04
882 1525 8.823818 ACTATAGTTTAACGTATGCAATGGAAC 58.176 33.333 0.00 0.00 0.00 3.62
883 1526 8.822855 CACTATAGTTTAACGTATGCAATGGAA 58.177 33.333 1.56 0.00 0.00 3.53
890 1533 7.646922 ACAGTAGCACTATAGTTTAACGTATGC 59.353 37.037 1.56 0.28 0.00 3.14
903 1549 5.356190 GTGTGTGACCTACAGTAGCACTATA 59.644 44.000 15.45 4.11 40.69 1.31
915 1561 1.944709 GTTGGGTTGTGTGTGACCTAC 59.055 52.381 0.00 0.00 36.18 3.18
1069 1715 5.006746 GTGATCGACCCTAATTTGCTAAGTG 59.993 44.000 0.00 0.00 0.00 3.16
1079 1725 6.323996 TGATTAGTTCAGTGATCGACCCTAAT 59.676 38.462 0.00 0.43 0.00 1.73
1084 1730 5.651530 TCTTGATTAGTTCAGTGATCGACC 58.348 41.667 0.00 0.00 35.27 4.79
1099 1745 3.998913 TGACAGCACCCATCTTGATTA 57.001 42.857 0.00 0.00 0.00 1.75
1103 1749 2.189594 TCTTGACAGCACCCATCTTG 57.810 50.000 0.00 0.00 0.00 3.02
1322 1968 0.601558 ATCGAGCAACACGTACCTGT 59.398 50.000 0.00 0.00 0.00 4.00
1332 1978 0.654683 GCACCATGAGATCGAGCAAC 59.345 55.000 2.38 0.00 0.00 4.17
1372 2018 9.991906 GATGAATCACCATCAAATTAAATGGAT 57.008 29.630 20.41 7.01 44.37 3.41
1389 2035 1.066002 CGCCATGGGTTGATGAATCAC 59.934 52.381 15.13 0.00 36.36 3.06
1392 2038 2.297701 GTACGCCATGGGTTGATGAAT 58.702 47.619 15.13 0.00 0.00 2.57
1609 2255 2.440980 ACGTCGTAGTAGGGGCCC 60.441 66.667 17.12 17.12 0.00 5.80
1927 2573 0.110056 TGAAGTAGACGCCGTCGAAC 60.110 55.000 12.13 13.91 37.67 3.95
2183 2837 7.748847 AGCTAATTTGATTTTTACGACGATGT 58.251 30.769 0.00 0.00 0.00 3.06
2185 2839 7.009815 TCGAGCTAATTTGATTTTTACGACGAT 59.990 33.333 0.00 0.00 0.00 3.73
2186 2840 6.308524 TCGAGCTAATTTGATTTTTACGACGA 59.691 34.615 0.00 0.00 0.00 4.20
2191 2845 6.681599 GTCCGTCGAGCTAATTTGATTTTTAC 59.318 38.462 0.00 0.00 0.00 2.01
2216 2871 4.699735 TGTTCCTGTAGTTATTGTGCCATG 59.300 41.667 0.00 0.00 0.00 3.66
2230 2885 3.495331 TGTACCTTACCGTGTTCCTGTA 58.505 45.455 0.00 0.00 0.00 2.74
2241 2896 8.743714 ACAATACACTAGTTACTGTACCTTACC 58.256 37.037 0.00 0.00 0.00 2.85
2283 2941 2.287308 ACACACACACACACACAAACAC 60.287 45.455 0.00 0.00 0.00 3.32
2284 2942 1.950216 ACACACACACACACACAAACA 59.050 42.857 0.00 0.00 0.00 2.83
2285 2943 2.287308 ACACACACACACACACACAAAC 60.287 45.455 0.00 0.00 0.00 2.93
2286 2944 1.950216 ACACACACACACACACACAAA 59.050 42.857 0.00 0.00 0.00 2.83
2287 2945 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
2288 2946 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2289 2947 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2290 2948 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2291 2949 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2292 2950 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2293 2951 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2294 2952 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2295 2953 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
2296 2954 0.957888 CCCACACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2297 2955 0.958382 ACCCACACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
2298 2956 0.957888 CACCCACACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2299 2957 0.958382 ACACCCACACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
2300 2958 0.957888 CACACCCACACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2301 2959 0.958382 ACACACCCACACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
2302 2960 0.957888 CACACACCCACACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2303 2961 0.958382 ACACACACCCACACACACAC 60.958 55.000 0.00 0.00 0.00 3.82
2304 2962 0.957888 CACACACACCCACACACACA 60.958 55.000 0.00 0.00 0.00 3.72
2314 2972 1.931172 GTACTGTCACACACACACACC 59.069 52.381 0.00 0.00 0.00 4.16
2327 2985 8.741841 ACCTTCAGAAGTTATAGAAGTACTGTC 58.258 37.037 9.41 0.00 36.60 3.51
2346 3005 1.369209 CGCAACGCAACACCTTCAG 60.369 57.895 0.00 0.00 0.00 3.02
2363 3022 4.422840 TGCACATTTATTGGCAAATCTCG 58.577 39.130 3.01 0.00 31.33 4.04
2467 3127 4.553742 CGACTGCTAGTACATGAGCTACTG 60.554 50.000 0.00 0.00 39.54 2.74
2473 3133 3.766676 ACACGACTGCTAGTACATGAG 57.233 47.619 0.00 0.00 0.00 2.90
2485 3148 7.700656 TGTGATATGTCTTGTATTACACGACTG 59.299 37.037 25.05 4.97 44.63 3.51
2520 3183 3.955551 TCATGGTTGCATATTGAGCACAT 59.044 39.130 0.00 0.00 42.54 3.21
2522 3185 3.379372 ACTCATGGTTGCATATTGAGCAC 59.621 43.478 13.33 0.00 42.54 4.40
2523 3186 3.623703 ACTCATGGTTGCATATTGAGCA 58.376 40.909 13.33 3.54 37.84 4.26
2524 3187 4.357142 CAACTCATGGTTGCATATTGAGC 58.643 43.478 12.23 0.00 46.89 4.26
2562 3225 7.551585 TGCCTATTTTTCACAAAGAAGAACAA 58.448 30.769 0.00 0.00 37.57 2.83
2563 3226 7.106439 TGCCTATTTTTCACAAAGAAGAACA 57.894 32.000 0.00 0.00 37.57 3.18
2600 3263 6.153212 TGCGACGAGATTTTCTAGAAAAAG 57.847 37.500 29.22 22.20 42.71 2.27
2606 3269 8.328146 TGAATAAAATGCGACGAGATTTTCTAG 58.672 33.333 16.65 0.00 34.42 2.43
2627 3290 4.457603 CCCTCCAAACATCGTTGTTGAATA 59.542 41.667 12.39 0.00 45.30 1.75
2628 3291 3.255642 CCCTCCAAACATCGTTGTTGAAT 59.744 43.478 12.39 0.00 45.30 2.57
2629 3292 2.621055 CCCTCCAAACATCGTTGTTGAA 59.379 45.455 12.39 1.48 45.30 2.69
2630 3293 2.158740 TCCCTCCAAACATCGTTGTTGA 60.159 45.455 12.39 6.03 45.30 3.18
2631 3294 2.226330 TCCCTCCAAACATCGTTGTTG 58.774 47.619 12.39 7.10 45.30 3.33
2659 3322 2.421424 GCTTGGTGATCCACATGACTTC 59.579 50.000 0.00 0.00 44.22 3.01
2662 3325 1.098050 GGCTTGGTGATCCACATGAC 58.902 55.000 0.00 0.00 44.22 3.06
2683 3346 4.303794 AGGGAGTATTTGGTAGGCATGTA 58.696 43.478 0.00 0.00 0.00 2.29
2698 3361 5.134725 AGTATTTAGGAACGGAGGGAGTA 57.865 43.478 0.00 0.00 0.00 2.59
2699 3362 3.991683 AGTATTTAGGAACGGAGGGAGT 58.008 45.455 0.00 0.00 0.00 3.85
2700 3363 4.161754 ACAAGTATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
2701 3364 4.098894 ACAAGTATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2702 3365 4.161754 AGACAAGTATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2703 3366 5.340439 AGACAAGTATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2704 3367 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
2705 3368 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
2706 3369 8.767478 TTAGAAAGACAAGTATTTAGGAACGG 57.233 34.615 0.00 0.00 0.00 4.44
2707 3370 8.381387 GCTTAGAAAGACAAGTATTTAGGAACG 58.619 37.037 0.00 0.00 0.00 3.95
2708 3371 9.216117 TGCTTAGAAAGACAAGTATTTAGGAAC 57.784 33.333 0.00 0.00 0.00 3.62
2709 3372 9.959721 ATGCTTAGAAAGACAAGTATTTAGGAA 57.040 29.630 0.00 0.00 0.00 3.36
2710 3373 9.959721 AATGCTTAGAAAGACAAGTATTTAGGA 57.040 29.630 0.00 0.00 34.65 2.94
2715 3378 9.899226 GTTGAAATGCTTAGAAAGACAAGTATT 57.101 29.630 0.00 0.00 38.29 1.89
2716 3379 9.066892 TGTTGAAATGCTTAGAAAGACAAGTAT 57.933 29.630 0.00 0.00 0.00 2.12
2717 3380 8.445275 TGTTGAAATGCTTAGAAAGACAAGTA 57.555 30.769 0.00 0.00 0.00 2.24
2718 3381 7.333528 TGTTGAAATGCTTAGAAAGACAAGT 57.666 32.000 0.00 0.00 0.00 3.16
2719 3382 8.633075 TTTGTTGAAATGCTTAGAAAGACAAG 57.367 30.769 0.00 0.00 0.00 3.16
2720 3383 9.033481 CATTTGTTGAAATGCTTAGAAAGACAA 57.967 29.630 0.00 0.00 41.50 3.18
2721 3384 8.412456 TCATTTGTTGAAATGCTTAGAAAGACA 58.588 29.630 0.00 0.00 45.61 3.41
2722 3385 8.694394 GTCATTTGTTGAAATGCTTAGAAAGAC 58.306 33.333 0.00 0.00 45.61 3.01
2723 3386 8.632679 AGTCATTTGTTGAAATGCTTAGAAAGA 58.367 29.630 0.00 0.00 45.61 2.52
2724 3387 8.807667 AGTCATTTGTTGAAATGCTTAGAAAG 57.192 30.769 0.00 0.00 45.61 2.62
2725 3388 9.677567 GTAGTCATTTGTTGAAATGCTTAGAAA 57.322 29.630 0.00 0.00 45.61 2.52
2726 3389 8.845227 TGTAGTCATTTGTTGAAATGCTTAGAA 58.155 29.630 0.00 0.00 45.61 2.10
2727 3390 8.389779 TGTAGTCATTTGTTGAAATGCTTAGA 57.610 30.769 0.00 0.00 45.61 2.10
2730 3393 8.575589 TGTATGTAGTCATTTGTTGAAATGCTT 58.424 29.630 0.00 0.00 45.61 3.91
2731 3394 8.109705 TGTATGTAGTCATTTGTTGAAATGCT 57.890 30.769 0.00 0.00 45.61 3.79
2732 3395 8.236586 TCTGTATGTAGTCATTTGTTGAAATGC 58.763 33.333 0.00 0.00 45.61 3.56
2733 3396 9.764870 CTCTGTATGTAGTCATTTGTTGAAATG 57.235 33.333 0.00 0.00 46.84 2.32
2734 3397 8.454106 GCTCTGTATGTAGTCATTTGTTGAAAT 58.546 33.333 0.00 0.00 35.70 2.17
2735 3398 7.443879 TGCTCTGTATGTAGTCATTTGTTGAAA 59.556 33.333 0.00 0.00 35.70 2.69
2736 3399 6.934083 TGCTCTGTATGTAGTCATTTGTTGAA 59.066 34.615 0.00 0.00 35.70 2.69
2737 3400 6.463360 TGCTCTGTATGTAGTCATTTGTTGA 58.537 36.000 0.00 0.00 35.70 3.18
2738 3401 6.726258 TGCTCTGTATGTAGTCATTTGTTG 57.274 37.500 0.00 0.00 35.70 3.33
2739 3402 7.744087 TTTGCTCTGTATGTAGTCATTTGTT 57.256 32.000 0.00 0.00 35.70 2.83
2740 3403 7.744087 TTTTGCTCTGTATGTAGTCATTTGT 57.256 32.000 0.00 0.00 35.70 2.83
2741 3404 8.453320 TCATTTTGCTCTGTATGTAGTCATTTG 58.547 33.333 0.00 0.00 35.70 2.32
2742 3405 8.565896 TCATTTTGCTCTGTATGTAGTCATTT 57.434 30.769 0.00 0.00 35.70 2.32
2743 3406 7.826252 ACTCATTTTGCTCTGTATGTAGTCATT 59.174 33.333 0.00 0.00 35.70 2.57
2744 3407 7.279536 CACTCATTTTGCTCTGTATGTAGTCAT 59.720 37.037 0.00 0.00 38.00 3.06
2745 3408 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
2746 3409 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2747 3410 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2748 3411 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2749 3412 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2750 3413 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2751 3414 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2752 3415 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2753 3416 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2754 3417 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2755 3418 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2756 3419 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2757 3420 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2758 3421 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
2759 3422 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
2796 3459 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
2797 3460 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
2799 3462 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
2800 3463 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
2801 3464 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
2802 3465 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
2803 3466 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
2830 3493 8.947115 CCTCCGTTCTTAAATATTTGTCTTTCT 58.053 33.333 11.05 0.00 0.00 2.52
2831 3494 8.182227 CCCTCCGTTCTTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
2832 3495 7.886446 TCCCTCCGTTCTTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
2833 3496 7.399634 TCCCTCCGTTCTTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
2834 3497 6.954232 TCCCTCCGTTCTTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
2835 3498 6.822170 ACTCCCTCCGTTCTTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2836 3499 6.718294 ACTCCCTCCGTTCTTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2837 3500 7.767198 TGTACTCCCTCCGTTCTTAAATATTTG 59.233 37.037 11.05 0.00 0.00 2.32
2838 3501 7.854337 TGTACTCCCTCCGTTCTTAAATATTT 58.146 34.615 5.89 5.89 0.00 1.40
2839 3502 7.427989 TGTACTCCCTCCGTTCTTAAATATT 57.572 36.000 0.00 0.00 0.00 1.28
2840 3503 7.427989 TTGTACTCCCTCCGTTCTTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
2841 3504 6.855763 TTGTACTCCCTCCGTTCTTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
2842 3505 5.750352 TTGTACTCCCTCCGTTCTTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
2843 3506 5.246656 TCATTGTACTCCCTCCGTTCTTAAA 59.753 40.000 0.00 0.00 0.00 1.52
2844 3507 4.773674 TCATTGTACTCCCTCCGTTCTTAA 59.226 41.667 0.00 0.00 0.00 1.85
2845 3508 4.346730 TCATTGTACTCCCTCCGTTCTTA 58.653 43.478 0.00 0.00 0.00 2.10
2846 3509 3.170717 TCATTGTACTCCCTCCGTTCTT 58.829 45.455 0.00 0.00 0.00 2.52
2847 3510 2.816411 TCATTGTACTCCCTCCGTTCT 58.184 47.619 0.00 0.00 0.00 3.01
2848 3511 3.604875 TTCATTGTACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2849 3512 4.360951 TTTTCATTGTACTCCCTCCGTT 57.639 40.909 0.00 0.00 0.00 4.44
2850 3513 4.261801 CATTTTCATTGTACTCCCTCCGT 58.738 43.478 0.00 0.00 0.00 4.69
2851 3514 4.261801 ACATTTTCATTGTACTCCCTCCG 58.738 43.478 0.00 0.00 0.00 4.63
2852 3515 5.297029 GCTACATTTTCATTGTACTCCCTCC 59.703 44.000 0.00 0.00 0.00 4.30
2853 3516 6.116126 AGCTACATTTTCATTGTACTCCCTC 58.884 40.000 0.00 0.00 0.00 4.30
2854 3517 6.067217 AGCTACATTTTCATTGTACTCCCT 57.933 37.500 0.00 0.00 0.00 4.20
2855 3518 7.859325 TTAGCTACATTTTCATTGTACTCCC 57.141 36.000 0.00 0.00 0.00 4.30
2856 3519 8.947115 AGTTTAGCTACATTTTCATTGTACTCC 58.053 33.333 0.00 0.00 0.00 3.85
2862 3525 9.884465 GCCTATAGTTTAGCTACATTTTCATTG 57.116 33.333 0.00 0.00 31.59 2.82
2863 3526 9.853177 AGCCTATAGTTTAGCTACATTTTCATT 57.147 29.630 0.00 0.00 32.73 2.57
2864 3527 9.853177 AAGCCTATAGTTTAGCTACATTTTCAT 57.147 29.630 0.00 0.00 34.49 2.57
2865 3528 9.326413 GAAGCCTATAGTTTAGCTACATTTTCA 57.674 33.333 0.00 0.00 34.49 2.69
2866 3529 9.326413 TGAAGCCTATAGTTTAGCTACATTTTC 57.674 33.333 0.00 0.00 34.49 2.29
2867 3530 9.681062 TTGAAGCCTATAGTTTAGCTACATTTT 57.319 29.630 0.00 0.00 34.49 1.82
2868 3531 9.681062 TTTGAAGCCTATAGTTTAGCTACATTT 57.319 29.630 0.00 0.00 34.49 2.32
2869 3532 9.681062 TTTTGAAGCCTATAGTTTAGCTACATT 57.319 29.630 0.00 0.00 34.49 2.71
2870 3533 9.681062 TTTTTGAAGCCTATAGTTTAGCTACAT 57.319 29.630 0.00 0.00 34.49 2.29
2909 3572 9.261180 TGAACGCAATTTGGTTTATAAATTTGA 57.739 25.926 0.00 0.00 36.02 2.69
2910 3573 9.869844 TTGAACGCAATTTGGTTTATAAATTTG 57.130 25.926 0.00 3.17 36.02 2.32
2912 3575 8.227119 GCTTGAACGCAATTTGGTTTATAAATT 58.773 29.630 0.31 0.00 38.02 1.82
2913 3576 7.386299 TGCTTGAACGCAATTTGGTTTATAAAT 59.614 29.630 0.31 0.00 36.89 1.40
2914 3577 6.701841 TGCTTGAACGCAATTTGGTTTATAAA 59.298 30.769 0.00 0.00 36.89 1.40
2915 3578 6.144724 GTGCTTGAACGCAATTTGGTTTATAA 59.855 34.615 0.00 0.00 42.32 0.98
2916 3579 5.631512 GTGCTTGAACGCAATTTGGTTTATA 59.368 36.000 0.00 0.00 42.32 0.98
2917 3580 4.447389 GTGCTTGAACGCAATTTGGTTTAT 59.553 37.500 0.00 0.00 42.32 1.40
2918 3581 3.799420 GTGCTTGAACGCAATTTGGTTTA 59.201 39.130 0.00 0.00 42.32 2.01
2919 3582 2.607180 GTGCTTGAACGCAATTTGGTTT 59.393 40.909 0.00 0.00 42.32 3.27
2920 3583 2.159114 AGTGCTTGAACGCAATTTGGTT 60.159 40.909 0.00 1.20 42.32 3.67
2921 3584 1.408702 AGTGCTTGAACGCAATTTGGT 59.591 42.857 0.00 0.00 42.32 3.67
2922 3585 2.053627 GAGTGCTTGAACGCAATTTGG 58.946 47.619 0.00 0.00 42.32 3.28
2923 3586 2.975851 GAGAGTGCTTGAACGCAATTTG 59.024 45.455 0.00 0.00 42.32 2.32
2924 3587 2.880890 AGAGAGTGCTTGAACGCAATTT 59.119 40.909 0.00 0.00 42.32 1.82
2925 3588 2.481952 GAGAGAGTGCTTGAACGCAATT 59.518 45.455 0.00 0.00 42.32 2.32
2926 3589 2.072298 GAGAGAGTGCTTGAACGCAAT 58.928 47.619 0.00 0.00 42.32 3.56
2927 3590 1.502231 GAGAGAGTGCTTGAACGCAA 58.498 50.000 0.00 0.00 42.32 4.85
2928 3591 0.319900 GGAGAGAGTGCTTGAACGCA 60.320 55.000 0.00 0.00 37.62 5.24
2929 3592 1.016653 GGGAGAGAGTGCTTGAACGC 61.017 60.000 0.00 0.00 0.00 4.84
2930 3593 0.318441 TGGGAGAGAGTGCTTGAACG 59.682 55.000 0.00 0.00 0.00 3.95
2931 3594 1.346068 ACTGGGAGAGAGTGCTTGAAC 59.654 52.381 0.00 0.00 0.00 3.18
2932 3595 1.345741 CACTGGGAGAGAGTGCTTGAA 59.654 52.381 0.00 0.00 34.77 2.69
2933 3596 0.972134 CACTGGGAGAGAGTGCTTGA 59.028 55.000 0.00 0.00 34.77 3.02
2934 3597 0.972134 TCACTGGGAGAGAGTGCTTG 59.028 55.000 0.00 0.00 40.64 4.01
2935 3598 1.346068 GTTCACTGGGAGAGAGTGCTT 59.654 52.381 0.00 0.00 40.64 3.91
2936 3599 0.972883 GTTCACTGGGAGAGAGTGCT 59.027 55.000 0.00 0.00 40.64 4.40
2937 3600 0.681733 TGTTCACTGGGAGAGAGTGC 59.318 55.000 0.00 0.00 40.64 4.40
2938 3601 2.301296 ACATGTTCACTGGGAGAGAGTG 59.699 50.000 0.00 0.00 41.96 3.51
2939 3602 2.301296 CACATGTTCACTGGGAGAGAGT 59.699 50.000 0.00 0.00 0.00 3.24
2940 3603 2.301296 ACACATGTTCACTGGGAGAGAG 59.699 50.000 0.00 0.00 0.00 3.20
2941 3604 2.300152 GACACATGTTCACTGGGAGAGA 59.700 50.000 0.00 0.00 0.00 3.10
2942 3605 2.613977 GGACACATGTTCACTGGGAGAG 60.614 54.545 0.00 0.00 0.00 3.20
2943 3606 1.347707 GGACACATGTTCACTGGGAGA 59.652 52.381 0.00 0.00 0.00 3.71
2944 3607 1.349026 AGGACACATGTTCACTGGGAG 59.651 52.381 0.00 0.00 0.00 4.30
2945 3608 1.072173 CAGGACACATGTTCACTGGGA 59.928 52.381 0.00 0.00 0.00 4.37
2946 3609 1.072173 TCAGGACACATGTTCACTGGG 59.928 52.381 16.17 0.00 0.00 4.45
2947 3610 2.146342 GTCAGGACACATGTTCACTGG 58.854 52.381 16.17 0.00 0.00 4.00
2948 3611 2.837498 TGTCAGGACACATGTTCACTG 58.163 47.619 12.08 12.08 36.21 3.66
2949 3612 3.558931 TTGTCAGGACACATGTTCACT 57.441 42.857 0.77 0.00 41.67 3.41
2950 3613 4.275689 TCAATTGTCAGGACACATGTTCAC 59.724 41.667 5.13 0.00 41.67 3.18
2951 3614 4.275689 GTCAATTGTCAGGACACATGTTCA 59.724 41.667 5.13 0.00 41.67 3.18
2952 3615 4.320494 GGTCAATTGTCAGGACACATGTTC 60.320 45.833 5.13 0.00 41.67 3.18
2953 3616 3.569701 GGTCAATTGTCAGGACACATGTT 59.430 43.478 5.13 0.00 41.67 2.71
2954 3617 3.149196 GGTCAATTGTCAGGACACATGT 58.851 45.455 5.13 0.00 41.67 3.21
2955 3618 2.160219 CGGTCAATTGTCAGGACACATG 59.840 50.000 5.13 4.68 41.67 3.21
2956 3619 2.426522 CGGTCAATTGTCAGGACACAT 58.573 47.619 5.13 0.00 41.67 3.21
2957 3620 1.877637 CGGTCAATTGTCAGGACACA 58.122 50.000 5.13 0.00 41.67 3.72
2958 3621 0.517316 GCGGTCAATTGTCAGGACAC 59.483 55.000 5.13 0.00 41.67 3.67
2959 3622 0.396435 AGCGGTCAATTGTCAGGACA 59.604 50.000 5.13 0.00 39.98 4.02
2960 3623 0.798776 CAGCGGTCAATTGTCAGGAC 59.201 55.000 5.13 0.00 0.00 3.85
2961 3624 0.684535 TCAGCGGTCAATTGTCAGGA 59.315 50.000 5.13 0.00 0.00 3.86
2962 3625 0.798776 GTCAGCGGTCAATTGTCAGG 59.201 55.000 5.13 0.00 0.00 3.86
2963 3626 1.462283 CAGTCAGCGGTCAATTGTCAG 59.538 52.381 5.13 1.71 0.00 3.51
2964 3627 1.202639 ACAGTCAGCGGTCAATTGTCA 60.203 47.619 5.13 0.00 0.00 3.58
2965 3628 1.512926 ACAGTCAGCGGTCAATTGTC 58.487 50.000 5.13 0.00 0.00 3.18
2966 3629 1.603802 CAACAGTCAGCGGTCAATTGT 59.396 47.619 5.13 0.00 0.00 2.71
2967 3630 1.872952 TCAACAGTCAGCGGTCAATTG 59.127 47.619 0.00 0.00 0.00 2.32
2968 3631 1.873591 GTCAACAGTCAGCGGTCAATT 59.126 47.619 0.00 0.00 0.00 2.32
2969 3632 1.070758 AGTCAACAGTCAGCGGTCAAT 59.929 47.619 0.00 0.00 0.00 2.57
2970 3633 0.464036 AGTCAACAGTCAGCGGTCAA 59.536 50.000 0.00 0.00 0.00 3.18
2971 3634 0.464036 AAGTCAACAGTCAGCGGTCA 59.536 50.000 0.00 0.00 0.00 4.02
2972 3635 1.583054 AAAGTCAACAGTCAGCGGTC 58.417 50.000 0.00 0.00 0.00 4.79
2973 3636 2.038387 AAAAGTCAACAGTCAGCGGT 57.962 45.000 0.00 0.00 0.00 5.68
2974 3637 4.545823 TTTAAAAGTCAACAGTCAGCGG 57.454 40.909 0.00 0.00 0.00 5.52
2975 3638 4.437820 GCTTTTAAAAGTCAACAGTCAGCG 59.562 41.667 24.95 0.67 38.28 5.18
2976 3639 5.230097 GTGCTTTTAAAAGTCAACAGTCAGC 59.770 40.000 24.95 10.60 38.28 4.26
2977 3640 6.321717 TGTGCTTTTAAAAGTCAACAGTCAG 58.678 36.000 24.95 0.95 38.28 3.51
2978 3641 6.260870 TGTGCTTTTAAAAGTCAACAGTCA 57.739 33.333 24.95 14.99 38.28 3.41
2979 3642 6.972328 TCATGTGCTTTTAAAAGTCAACAGTC 59.028 34.615 24.95 13.19 38.28 3.51
2980 3643 6.751888 GTCATGTGCTTTTAAAAGTCAACAGT 59.248 34.615 24.95 14.75 38.28 3.55
2981 3644 6.974622 AGTCATGTGCTTTTAAAAGTCAACAG 59.025 34.615 24.95 18.51 38.28 3.16
2982 3645 6.862209 AGTCATGTGCTTTTAAAAGTCAACA 58.138 32.000 24.95 24.02 38.28 3.33
2983 3646 7.755582 AAGTCATGTGCTTTTAAAAGTCAAC 57.244 32.000 24.95 20.39 38.28 3.18
2984 3647 8.770438 AAAAGTCATGTGCTTTTAAAAGTCAA 57.230 26.923 24.95 13.35 42.31 3.18
2985 3648 8.770438 AAAAAGTCATGTGCTTTTAAAAGTCA 57.230 26.923 24.95 22.71 43.01 3.41
3063 3726 9.412460 TCCTGAATCTGCAAATATATTTCAACT 57.588 29.630 7.76 0.00 0.00 3.16
3090 3753 5.765182 AGACATCTTCAAGTCCACGATTTTT 59.235 36.000 0.00 0.00 35.38 1.94
3091 3754 5.308825 AGACATCTTCAAGTCCACGATTTT 58.691 37.500 0.00 0.00 35.38 1.82
3092 3755 4.899502 AGACATCTTCAAGTCCACGATTT 58.100 39.130 0.00 0.00 35.38 2.17
3093 3756 4.543590 AGACATCTTCAAGTCCACGATT 57.456 40.909 0.00 0.00 35.38 3.34
3094 3757 5.000012 GTAGACATCTTCAAGTCCACGAT 58.000 43.478 0.00 0.00 35.38 3.73
3095 3758 4.436242 GTAGACATCTTCAAGTCCACGA 57.564 45.455 0.00 0.00 35.38 4.35
3096 3759 3.119955 TCGTAGACATCTTCAAGTCCACG 60.120 47.826 7.10 7.10 46.25 4.94
3097 3760 4.436242 TCGTAGACATCTTCAAGTCCAC 57.564 45.455 0.00 0.00 35.38 4.02
3098 3761 5.661056 ATTCGTAGACATCTTCAAGTCCA 57.339 39.130 0.00 0.00 34.32 4.02
3099 3762 6.969828 AAATTCGTAGACATCTTCAAGTCC 57.030 37.500 0.00 0.00 34.32 3.85
3100 3763 9.742552 GTTAAAATTCGTAGACATCTTCAAGTC 57.257 33.333 0.00 0.00 34.32 3.01
3101 3764 9.268268 TGTTAAAATTCGTAGACATCTTCAAGT 57.732 29.630 0.00 0.00 34.32 3.16
3107 3770 9.878599 CAACTTTGTTAAAATTCGTAGACATCT 57.121 29.630 0.00 0.00 34.32 2.90
3108 3771 9.872757 TCAACTTTGTTAAAATTCGTAGACATC 57.127 29.630 0.00 0.00 34.32 3.06
3110 3773 9.658475 CATCAACTTTGTTAAAATTCGTAGACA 57.342 29.630 0.00 0.00 34.32 3.41
3111 3774 9.872757 TCATCAACTTTGTTAAAATTCGTAGAC 57.127 29.630 0.00 0.00 34.32 2.59
3183 3846 8.497554 CGAACATTTTTCAAATCCATGAACATT 58.502 29.630 0.00 0.00 38.95 2.71
3184 3847 7.656948 ACGAACATTTTTCAAATCCATGAACAT 59.343 29.630 0.00 0.00 38.95 2.71
3185 3848 6.983307 ACGAACATTTTTCAAATCCATGAACA 59.017 30.769 0.00 0.00 38.95 3.18
3186 3849 7.406799 ACGAACATTTTTCAAATCCATGAAC 57.593 32.000 0.00 0.00 38.95 3.18
3187 3850 9.534565 TTTACGAACATTTTTCAAATCCATGAA 57.465 25.926 0.00 0.00 37.53 2.57
3188 3851 9.703892 ATTTACGAACATTTTTCAAATCCATGA 57.296 25.926 0.00 0.00 0.00 3.07
3202 3865 8.822855 GGAAACCTTTTCAAATTTACGAACATT 58.177 29.630 0.00 0.00 0.00 2.71
3203 3866 8.201464 AGGAAACCTTTTCAAATTTACGAACAT 58.799 29.630 0.00 0.00 0.00 2.71
3204 3867 7.489757 CAGGAAACCTTTTCAAATTTACGAACA 59.510 33.333 0.00 0.00 0.00 3.18
3205 3868 7.042992 CCAGGAAACCTTTTCAAATTTACGAAC 60.043 37.037 0.00 0.00 0.00 3.95
3206 3869 6.981559 CCAGGAAACCTTTTCAAATTTACGAA 59.018 34.615 0.00 0.00 0.00 3.85
3207 3870 6.097129 ACCAGGAAACCTTTTCAAATTTACGA 59.903 34.615 0.00 0.00 0.00 3.43
3208 3871 6.277605 ACCAGGAAACCTTTTCAAATTTACG 58.722 36.000 0.00 0.00 0.00 3.18
3209 3872 9.256477 CTAACCAGGAAACCTTTTCAAATTTAC 57.744 33.333 0.00 0.00 0.00 2.01
3210 3873 9.203163 TCTAACCAGGAAACCTTTTCAAATTTA 57.797 29.630 0.00 0.00 0.00 1.40
3211 3874 8.084985 TCTAACCAGGAAACCTTTTCAAATTT 57.915 30.769 0.00 0.00 0.00 1.82
3212 3875 7.669089 TCTAACCAGGAAACCTTTTCAAATT 57.331 32.000 0.00 0.00 0.00 1.82
3213 3876 7.669089 TTCTAACCAGGAAACCTTTTCAAAT 57.331 32.000 0.00 0.00 0.00 2.32
3214 3877 7.483580 TTTCTAACCAGGAAACCTTTTCAAA 57.516 32.000 0.00 0.00 0.00 2.69
3215 3878 7.483580 TTTTCTAACCAGGAAACCTTTTCAA 57.516 32.000 0.00 0.00 33.22 2.69
3216 3879 7.125053 ACATTTTCTAACCAGGAAACCTTTTCA 59.875 33.333 0.00 0.00 31.88 2.69
3217 3880 7.497595 ACATTTTCTAACCAGGAAACCTTTTC 58.502 34.615 0.00 0.00 31.88 2.29
3218 3881 7.432148 ACATTTTCTAACCAGGAAACCTTTT 57.568 32.000 0.00 0.00 31.88 2.27
3219 3882 7.125053 TGAACATTTTCTAACCAGGAAACCTTT 59.875 33.333 0.00 0.00 31.88 3.11
3220 3883 6.609616 TGAACATTTTCTAACCAGGAAACCTT 59.390 34.615 0.00 0.00 31.88 3.50
3221 3884 6.040504 GTGAACATTTTCTAACCAGGAAACCT 59.959 38.462 0.00 0.00 31.88 3.50
3222 3885 6.183360 TGTGAACATTTTCTAACCAGGAAACC 60.183 38.462 0.00 0.00 31.88 3.27
3223 3886 6.801575 TGTGAACATTTTCTAACCAGGAAAC 58.198 36.000 0.00 0.00 31.88 2.78
3224 3887 7.411486 TTGTGAACATTTTCTAACCAGGAAA 57.589 32.000 0.00 0.00 33.67 3.13
3225 3888 7.411486 TTTGTGAACATTTTCTAACCAGGAA 57.589 32.000 0.00 0.00 32.36 3.36
3226 3889 7.411486 TTTTGTGAACATTTTCTAACCAGGA 57.589 32.000 0.00 0.00 32.36 3.86
3227 3890 8.661352 ATTTTTGTGAACATTTTCTAACCAGG 57.339 30.769 0.00 0.00 32.36 4.45
3228 3891 9.919348 CAATTTTTGTGAACATTTTCTAACCAG 57.081 29.630 0.00 0.00 32.36 4.00
3229 3892 9.658799 TCAATTTTTGTGAACATTTTCTAACCA 57.341 25.926 0.00 0.00 32.36 3.67
3240 3903 9.050601 ACAGTTTTTCTTCAATTTTTGTGAACA 57.949 25.926 0.00 0.00 31.78 3.18
3241 3904 9.316859 CACAGTTTTTCTTCAATTTTTGTGAAC 57.683 29.630 0.00 0.00 35.46 3.18
3242 3905 9.265901 TCACAGTTTTTCTTCAATTTTTGTGAA 57.734 25.926 0.00 0.00 38.45 3.18
3243 3906 8.824159 TCACAGTTTTTCTTCAATTTTTGTGA 57.176 26.923 0.00 0.00 38.91 3.58
3244 3907 9.480538 CATCACAGTTTTTCTTCAATTTTTGTG 57.519 29.630 0.00 0.00 34.95 3.33
3245 3908 9.218440 ACATCACAGTTTTTCTTCAATTTTTGT 57.782 25.926 0.00 0.00 0.00 2.83
3248 3911 9.434420 TGAACATCACAGTTTTTCTTCAATTTT 57.566 25.926 0.00 0.00 0.00 1.82
3249 3912 9.434420 TTGAACATCACAGTTTTTCTTCAATTT 57.566 25.926 0.00 0.00 0.00 1.82
3250 3913 9.434420 TTTGAACATCACAGTTTTTCTTCAATT 57.566 25.926 0.00 0.00 0.00 2.32
3251 3914 9.434420 TTTTGAACATCACAGTTTTTCTTCAAT 57.566 25.926 0.00 0.00 0.00 2.57
3252 3915 8.824159 TTTTGAACATCACAGTTTTTCTTCAA 57.176 26.923 0.00 0.00 0.00 2.69
3253 3916 8.824159 TTTTTGAACATCACAGTTTTTCTTCA 57.176 26.923 0.00 0.00 0.00 3.02
3341 4004 3.258622 TGGTCGGGTTTGTTTGTCTTTTT 59.741 39.130 0.00 0.00 0.00 1.94
3342 4005 2.826725 TGGTCGGGTTTGTTTGTCTTTT 59.173 40.909 0.00 0.00 0.00 2.27
3343 4006 2.425668 CTGGTCGGGTTTGTTTGTCTTT 59.574 45.455 0.00 0.00 0.00 2.52
3344 4007 2.021457 CTGGTCGGGTTTGTTTGTCTT 58.979 47.619 0.00 0.00 0.00 3.01
3345 4008 1.675552 CTGGTCGGGTTTGTTTGTCT 58.324 50.000 0.00 0.00 0.00 3.41
3346 4009 0.666374 CCTGGTCGGGTTTGTTTGTC 59.334 55.000 0.00 0.00 0.00 3.18
3347 4010 0.256464 TCCTGGTCGGGTTTGTTTGT 59.744 50.000 0.00 0.00 0.00 2.83
3348 4011 1.394618 TTCCTGGTCGGGTTTGTTTG 58.605 50.000 0.00 0.00 0.00 2.93
3349 4012 2.146920 TTTCCTGGTCGGGTTTGTTT 57.853 45.000 0.00 0.00 0.00 2.83
3350 4013 1.752498 GTTTTCCTGGTCGGGTTTGTT 59.248 47.619 0.00 0.00 0.00 2.83
3351 4014 1.395635 GTTTTCCTGGTCGGGTTTGT 58.604 50.000 0.00 0.00 0.00 2.83
3352 4015 0.671796 GGTTTTCCTGGTCGGGTTTG 59.328 55.000 0.00 0.00 36.94 2.93
3353 4016 0.820482 CGGTTTTCCTGGTCGGGTTT 60.820 55.000 0.00 0.00 37.95 3.27
3354 4017 1.228033 CGGTTTTCCTGGTCGGGTT 60.228 57.895 0.00 0.00 37.95 4.11
3355 4018 2.387476 GACGGTTTTCCTGGTCGGGT 62.387 60.000 0.00 0.00 37.95 5.28
3356 4019 1.670083 GACGGTTTTCCTGGTCGGG 60.670 63.158 0.00 0.00 37.95 5.14
3357 4020 1.670083 GGACGGTTTTCCTGGTCGG 60.670 63.158 0.00 0.00 37.95 4.79
3358 4021 1.670083 GGGACGGTTTTCCTGGTCG 60.670 63.158 0.00 0.00 37.95 4.79
3359 4022 0.179012 TTGGGACGGTTTTCCTGGTC 60.179 55.000 0.00 0.00 37.95 4.02
3360 4023 0.259356 TTTGGGACGGTTTTCCTGGT 59.741 50.000 0.00 0.00 37.95 4.00
3361 4024 3.119225 TTTGGGACGGTTTTCCTGG 57.881 52.632 0.00 0.00 37.95 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.