Multiple sequence alignment - TraesCS7A01G318500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G318500 chr7A 100.000 4745 0 0 1 4745 458936041 458931297 0.000000e+00 8763.0
1 TraesCS7A01G318500 chr7D 94.197 1999 85 11 2763 4745 401092290 401090307 0.000000e+00 3020.0
2 TraesCS7A01G318500 chr7D 97.330 1161 22 3 715 1866 401094429 401093269 0.000000e+00 1964.0
3 TraesCS7A01G318500 chr7D 92.919 918 39 13 1866 2761 401093299 401092386 0.000000e+00 1312.0
4 TraesCS7A01G318500 chr7D 95.112 491 12 7 213 698 401094887 401094404 0.000000e+00 763.0
5 TraesCS7A01G318500 chr7B 91.026 2173 109 37 1872 4029 410620199 410618098 0.000000e+00 2854.0
6 TraesCS7A01G318500 chr7B 95.482 1173 29 10 714 1866 410621343 410620175 0.000000e+00 1851.0
7 TraesCS7A01G318500 chr7B 91.590 654 37 9 62 700 410621967 410621317 0.000000e+00 887.0
8 TraesCS7A01G318500 chr7B 94.595 185 10 0 4456 4640 410615966 410615782 2.160000e-73 287.0
9 TraesCS7A01G318500 chr7B 92.045 176 13 1 4099 4273 410616415 410616240 3.670000e-61 246.0
10 TraesCS7A01G318500 chr7B 96.296 108 4 0 4638 4745 410579979 410579872 1.360000e-40 178.0
11 TraesCS7A01G318500 chr7B 94.643 112 2 1 4011 4118 410617904 410617793 2.270000e-38 171.0
12 TraesCS7A01G318500 chr3A 86.102 295 33 7 1470 1760 648311910 648311620 1.280000e-80 311.0
13 TraesCS7A01G318500 chr3D 86.786 280 32 4 1470 1748 512707435 512707160 1.660000e-79 307.0
14 TraesCS7A01G318500 chr3D 89.634 164 13 4 1108 1268 512707685 512707523 6.220000e-49 206.0
15 TraesCS7A01G318500 chr3B 86.429 280 33 4 1470 1748 675281921 675281646 7.720000e-78 302.0
16 TraesCS7A01G318500 chr3B 88.415 164 15 4 1108 1268 675282171 675282009 1.350000e-45 195.0
17 TraesCS7A01G318500 chr1D 88.446 251 24 4 1468 1717 355698589 355698343 9.980000e-77 298.0
18 TraesCS7A01G318500 chr1D 90.476 147 14 0 1120 1266 355698801 355698655 1.350000e-45 195.0
19 TraesCS7A01G318500 chr1B 88.446 251 24 4 1468 1717 478583494 478583248 9.980000e-77 298.0
20 TraesCS7A01G318500 chr1B 90.476 147 14 0 1120 1266 478583727 478583581 1.350000e-45 195.0
21 TraesCS7A01G318500 chr1A 88.446 251 24 4 1468 1717 456323328 456323082 9.980000e-77 298.0
22 TraesCS7A01G318500 chr1A 89.796 147 15 0 1120 1266 456323557 456323411 6.270000e-44 189.0
23 TraesCS7A01G318500 chr4D 73.554 242 51 10 1484 1717 485764233 485763997 3.940000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G318500 chr7A 458931297 458936041 4744 True 8763.000000 8763 100.000000 1 4745 1 chr7A.!!$R1 4744
1 TraesCS7A01G318500 chr7D 401090307 401094887 4580 True 1764.750000 3020 94.889500 213 4745 4 chr7D.!!$R1 4532
2 TraesCS7A01G318500 chr7B 410615782 410621967 6185 True 1049.333333 2854 93.230167 62 4640 6 chr7B.!!$R2 4578
3 TraesCS7A01G318500 chr3D 512707160 512707685 525 True 256.500000 307 88.210000 1108 1748 2 chr3D.!!$R1 640
4 TraesCS7A01G318500 chr3B 675281646 675282171 525 True 248.500000 302 87.422000 1108 1748 2 chr3B.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
87 88 0.257039 AAGAGGGCGCATGAGGAAAT 59.743 50.0 10.83 0.0 0.00 2.17 F
114 115 0.317479 ACTTTTCGTCCCTCTCCACG 59.683 55.0 0.00 0.0 37.36 4.94 F
115 116 0.601558 CTTTTCGTCCCTCTCCACGA 59.398 55.0 0.00 0.0 43.12 4.35 F
1618 1663 0.761323 TGGTGAAAGTCGTGGAGGGA 60.761 55.0 0.00 0.0 0.00 4.20 F
3194 3364 1.014352 ACAACAACAAGGTCGTCTGC 58.986 50.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 1963 1.982913 GCCAATTTAAGCGGAACAACG 59.017 47.619 0.0 0.0 0.00 4.10 R
1912 1964 3.297830 AGCCAATTTAAGCGGAACAAC 57.702 42.857 0.0 0.0 0.00 3.32 R
1914 1966 3.319405 TCAAAGCCAATTTAAGCGGAACA 59.681 39.130 0.0 0.0 0.00 3.18 R
3357 3527 0.391528 CCGACAGTGATGTCATGGCA 60.392 55.000 0.6 0.6 38.65 4.92 R
4676 6565 1.639108 TGGGTGGAGCTAGAGACACTA 59.361 52.381 0.0 0.0 34.42 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 7.455641 TCCTATATAAAGGAGAGCGAGAAAG 57.544 40.000 0.00 0.00 40.86 2.62
51 52 6.434652 TCCTATATAAAGGAGAGCGAGAAAGG 59.565 42.308 0.00 0.00 40.86 3.11
52 53 6.209788 CCTATATAAAGGAGAGCGAGAAAGGT 59.790 42.308 0.00 0.00 39.15 3.50
53 54 4.828072 ATAAAGGAGAGCGAGAAAGGTT 57.172 40.909 0.00 0.00 0.00 3.50
54 55 2.464157 AAGGAGAGCGAGAAAGGTTG 57.536 50.000 0.00 0.00 0.00 3.77
55 56 1.343069 AGGAGAGCGAGAAAGGTTGT 58.657 50.000 0.00 0.00 0.00 3.32
56 57 1.694696 AGGAGAGCGAGAAAGGTTGTT 59.305 47.619 0.00 0.00 0.00 2.83
57 58 2.104963 AGGAGAGCGAGAAAGGTTGTTT 59.895 45.455 0.00 0.00 0.00 2.83
58 59 2.879026 GGAGAGCGAGAAAGGTTGTTTT 59.121 45.455 0.00 0.00 0.00 2.43
59 60 3.304057 GGAGAGCGAGAAAGGTTGTTTTG 60.304 47.826 0.00 0.00 0.00 2.44
60 61 3.279434 AGAGCGAGAAAGGTTGTTTTGT 58.721 40.909 0.00 0.00 0.00 2.83
73 74 6.924111 AGGTTGTTTTGTTGCATATAAGAGG 58.076 36.000 0.00 0.00 0.00 3.69
81 82 1.347378 TGCATATAAGAGGGCGCATGA 59.653 47.619 10.83 0.00 0.00 3.07
83 84 2.625737 CATATAAGAGGGCGCATGAGG 58.374 52.381 10.83 0.00 0.00 3.86
87 88 0.257039 AAGAGGGCGCATGAGGAAAT 59.743 50.000 10.83 0.00 0.00 2.17
99 100 4.634443 GCATGAGGAAATGTACCGTACTTT 59.366 41.667 10.03 7.07 0.00 2.66
100 101 5.123344 GCATGAGGAAATGTACCGTACTTTT 59.877 40.000 17.86 17.86 38.33 2.27
101 102 6.674760 GCATGAGGAAATGTACCGTACTTTTC 60.675 42.308 26.86 26.86 45.03 2.29
112 113 1.542915 CGTACTTTTCGTCCCTCTCCA 59.457 52.381 0.00 0.00 0.00 3.86
114 115 0.317479 ACTTTTCGTCCCTCTCCACG 59.683 55.000 0.00 0.00 37.36 4.94
115 116 0.601558 CTTTTCGTCCCTCTCCACGA 59.398 55.000 0.00 0.00 43.12 4.35
118 119 2.178521 CGTCCCTCTCCACGAACG 59.821 66.667 0.00 0.00 38.32 3.95
135 136 5.181811 CACGAACGTGGGTATACATATAGGA 59.818 44.000 17.83 0.00 42.00 2.94
141 142 5.359009 CGTGGGTATACATATAGGATTCCGT 59.641 44.000 5.01 0.00 0.00 4.69
157 158 1.978097 TCCGTTACAAATCGAACGTCG 59.022 47.619 4.57 0.00 45.35 5.12
158 159 1.058129 CCGTTACAAATCGAACGTCGG 59.942 52.381 4.57 2.21 45.35 4.79
160 161 2.222137 CGTTACAAATCGAACGTCGGAC 60.222 50.000 0.00 0.00 42.62 4.79
162 163 2.144482 ACAAATCGAACGTCGGACTT 57.856 45.000 6.57 0.00 40.88 3.01
167 168 1.689959 TCGAACGTCGGACTTTTAGC 58.310 50.000 6.57 0.00 40.88 3.09
178 179 2.606272 GGACTTTTAGCATTCCCGTACG 59.394 50.000 8.69 8.69 0.00 3.67
183 184 6.752168 ACTTTTAGCATTCCCGTACGTATAT 58.248 36.000 15.21 0.99 0.00 0.86
208 213 5.181433 CGACTTAGCTGGCTGACTATATACA 59.819 44.000 5.25 0.00 0.00 2.29
209 214 6.334102 ACTTAGCTGGCTGACTATATACAC 57.666 41.667 5.25 0.00 0.00 2.90
211 216 2.029828 AGCTGGCTGACTATATACACGC 60.030 50.000 0.00 0.00 0.00 5.34
308 316 2.020720 CCAATTTATGTGCCACCGCTA 58.979 47.619 0.00 0.00 35.36 4.26
442 451 3.733988 GCAGAGCTAGTGCGTACAATGTA 60.734 47.826 6.38 0.00 45.42 2.29
483 496 3.371087 TTGCAGTGCAAGACGTACA 57.629 47.368 26.36 1.63 43.99 2.90
484 497 1.217001 TTGCAGTGCAAGACGTACAG 58.783 50.000 26.36 0.00 43.99 2.74
499 512 7.712264 AGACGTACAGAGATACATGTACTAC 57.288 40.000 7.96 3.23 46.17 2.73
527 543 4.868067 AGTAACTATTAAGCGGTGATCGG 58.132 43.478 0.00 0.00 39.69 4.18
698 720 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
699 721 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
701 723 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
703 725 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
704 726 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
705 727 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
706 728 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
707 729 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
708 730 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
709 731 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
710 732 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
711 733 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
712 734 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
713 735 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
714 736 6.097554 TCTCTCTCTCTCTCTCTCTCTCTTTC 59.902 46.154 0.00 0.00 0.00 2.62
715 737 5.960811 TCTCTCTCTCTCTCTCTCTCTTTCT 59.039 44.000 0.00 0.00 0.00 2.52
716 738 6.097554 TCTCTCTCTCTCTCTCTCTCTTTCTC 59.902 46.154 0.00 0.00 0.00 2.87
717 739 5.960811 TCTCTCTCTCTCTCTCTCTTTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
718 740 6.097554 TCTCTCTCTCTCTCTCTCTTTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
719 741 5.960811 TCTCTCTCTCTCTCTCTTTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
720 742 6.097554 TCTCTCTCTCTCTCTCTTTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
721 743 5.960811 TCTCTCTCTCTCTCTTTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
722 744 6.097554 TCTCTCTCTCTCTCTTTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
723 745 5.960811 TCTCTCTCTCTCTTTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
724 746 6.097554 TCTCTCTCTCTCTTTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
725 747 5.960811 TCTCTCTCTCTTTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
726 748 6.097554 TCTCTCTCTCTTTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
727 749 5.960811 TCTCTCTCTTTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
728 750 6.097554 TCTCTCTCTTTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
729 751 5.960811 TCTCTCTTTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
730 752 6.097554 TCTCTCTTTCTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
731 753 5.960811 TCTCTTTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
732 754 6.097554 TCTCTTTCTCTCTCTCTCTCTCTCTC 59.902 46.154 0.00 0.00 0.00 3.20
733 755 5.960811 TCTTTCTCTCTCTCTCTCTCTCTCT 59.039 44.000 0.00 0.00 0.00 3.10
734 756 5.860941 TTCTCTCTCTCTCTCTCTCTCTC 57.139 47.826 0.00 0.00 0.00 3.20
735 757 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
736 758 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
737 759 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
738 760 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
739 761 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
740 762 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
741 763 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
742 764 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
1618 1663 0.761323 TGGTGAAAGTCGTGGAGGGA 60.761 55.000 0.00 0.00 0.00 4.20
1823 1875 8.930846 AATCCTTATGCTGATTATGTAAAGCT 57.069 30.769 0.00 0.00 36.60 3.74
1828 1880 9.604626 CTTATGCTGATTATGTAAAGCTTTAGC 57.395 33.333 19.16 17.32 42.49 3.09
1866 1918 4.677673 AACTGCAAAAAGCCAAGATCTT 57.322 36.364 0.88 0.88 44.83 2.40
1867 1919 4.677673 ACTGCAAAAAGCCAAGATCTTT 57.322 36.364 4.86 0.00 44.83 2.52
1869 1921 6.160576 ACTGCAAAAAGCCAAGATCTTTTA 57.839 33.333 4.86 0.00 41.37 1.52
1870 1922 6.762333 ACTGCAAAAAGCCAAGATCTTTTAT 58.238 32.000 4.86 0.00 41.37 1.40
1871 1923 7.219322 ACTGCAAAAAGCCAAGATCTTTTATT 58.781 30.769 4.86 0.00 41.37 1.40
1872 1924 7.716560 ACTGCAAAAAGCCAAGATCTTTTATTT 59.283 29.630 4.86 4.15 41.37 1.40
1873 1925 8.449251 TGCAAAAAGCCAAGATCTTTTATTTT 57.551 26.923 4.86 9.80 41.37 1.82
1874 1926 8.901793 TGCAAAAAGCCAAGATCTTTTATTTTT 58.098 25.926 19.01 19.01 41.37 1.94
1880 1932 8.763049 AGCCAAGATCTTTTATTTTTAACTGC 57.237 30.769 4.86 0.00 0.00 4.40
1881 1933 8.367156 AGCCAAGATCTTTTATTTTTAACTGCA 58.633 29.630 4.86 0.00 0.00 4.41
1882 1934 8.987890 GCCAAGATCTTTTATTTTTAACTGCAA 58.012 29.630 4.86 0.00 0.00 4.08
1889 1941 9.167311 TCTTTTATTTTTAACTGCAAAAAGCCA 57.833 25.926 8.80 0.00 44.83 4.75
1890 1942 9.780413 CTTTTATTTTTAACTGCAAAAAGCCAA 57.220 25.926 2.54 0.00 44.83 4.52
1891 1943 9.780413 TTTTATTTTTAACTGCAAAAAGCCAAG 57.220 25.926 1.04 0.00 44.83 3.61
1892 1944 8.723942 TTATTTTTAACTGCAAAAAGCCAAGA 57.276 26.923 1.04 0.00 44.83 3.02
1893 1945 7.806409 ATTTTTAACTGCAAAAAGCCAAGAT 57.194 28.000 1.04 0.00 44.83 2.40
1894 1946 6.843069 TTTTAACTGCAAAAAGCCAAGATC 57.157 33.333 0.00 0.00 44.83 2.75
1895 1947 5.789643 TTAACTGCAAAAAGCCAAGATCT 57.210 34.783 0.00 0.00 44.83 2.75
1896 1948 3.655276 ACTGCAAAAAGCCAAGATCTG 57.345 42.857 0.00 0.00 44.83 2.90
1908 1960 5.129320 AAGCCAAGATCTGGTTTGAGTTTTT 59.871 36.000 10.83 0.00 46.13 1.94
1931 1985 1.982913 CGTTGTTCCGCTTAAATTGGC 59.017 47.619 0.00 0.00 0.00 4.52
1948 2002 4.497473 TTGGCTTTGATTAACTTGACCG 57.503 40.909 0.00 0.00 0.00 4.79
1965 2020 3.886505 TGACCGGAACAAAATTAGTTGCT 59.113 39.130 9.46 0.00 35.49 3.91
2142 2197 9.722184 CTGTTGGAGTTGAGATATGATATGATT 57.278 33.333 0.00 0.00 0.00 2.57
2254 2315 2.095364 AGAAGGTGCGTACGTAGTGAAG 60.095 50.000 17.90 0.00 45.73 3.02
2268 2329 6.341316 ACGTAGTGAAGATTACATGAGCAAT 58.659 36.000 0.00 0.00 42.51 3.56
2322 2388 9.204337 TGGCTTCTACCTATAAACAGTTATACA 57.796 33.333 0.00 0.00 32.10 2.29
2323 2389 9.694137 GGCTTCTACCTATAAACAGTTATACAG 57.306 37.037 0.00 0.00 32.10 2.74
2324 2390 9.694137 GCTTCTACCTATAAACAGTTATACAGG 57.306 37.037 0.00 0.00 33.90 4.00
2379 2450 7.622893 TTTAGGTGCTTGCAAAATTTCTTTT 57.377 28.000 0.00 0.00 34.90 2.27
2402 2473 6.969993 TTAGCCACAACTTTTCCTTGTATT 57.030 33.333 0.00 0.00 30.48 1.89
2405 2476 4.560716 GCCACAACTTTTCCTTGTATTCCC 60.561 45.833 0.00 0.00 30.48 3.97
2426 2497 3.081804 CGCCCAACAAACTTAGGAGATT 58.918 45.455 0.00 0.00 0.00 2.40
2455 2526 5.648960 TCACTGGACCCGGAATTATTTTTAC 59.351 40.000 0.73 0.00 0.00 2.01
2582 2653 3.359695 TTGCCCACCCTACTTACATTC 57.640 47.619 0.00 0.00 0.00 2.67
2644 2716 6.484288 TCAAGGAATCTCTTGCCAATTCTTA 58.516 36.000 6.60 0.00 42.68 2.10
2815 2985 2.126914 ACTCTTCGCAGTCGATATGC 57.873 50.000 13.83 13.83 45.04 3.14
2841 3011 8.673711 CAAAGCCATTTTGCTGTACTACTATAA 58.326 33.333 0.00 0.00 41.80 0.98
2886 3056 7.653311 GGCTGCTTAATAATTTGGGAACTTATG 59.347 37.037 0.00 0.00 0.00 1.90
2900 3070 7.511268 TGGGAACTTATGTGTAGTACTTTTGT 58.489 34.615 0.00 0.00 0.00 2.83
2977 3147 3.492011 ACGTGACACTGAACGGTTTAATC 59.508 43.478 3.68 0.00 43.96 1.75
3194 3364 1.014352 ACAACAACAAGGTCGTCTGC 58.986 50.000 0.00 0.00 0.00 4.26
3201 3371 2.286523 AAGGTCGTCTGCCTCCAGG 61.287 63.158 0.00 0.00 39.61 4.45
3357 3527 1.342174 CAAGGAACAAATGCAGCCAGT 59.658 47.619 0.00 0.00 0.00 4.00
3358 3528 0.963962 AGGAACAAATGCAGCCAGTG 59.036 50.000 0.00 0.00 0.00 3.66
3585 3761 2.354773 GCGACCATCCCGATCGAC 60.355 66.667 18.66 0.00 38.10 4.20
3711 3887 1.268283 GGGACTGGAACCCTCTCCTG 61.268 65.000 0.00 0.00 43.65 3.86
3780 3956 6.516028 GCATGAATGGATCAATGCACTTATCA 60.516 38.462 0.00 0.00 42.54 2.15
3781 3957 7.602753 CATGAATGGATCAATGCACTTATCAT 58.397 34.615 0.00 0.00 42.54 2.45
3943 4121 7.029563 GTCTGCATTTCAATTCCGAATAAAGT 58.970 34.615 0.00 0.00 0.00 2.66
4047 4438 4.947388 GGGTACATAGTTTTTCAGGATGCA 59.053 41.667 0.00 0.00 34.76 3.96
4109 5901 4.950205 AGTTCTTTCTAGGTTGACCGAA 57.050 40.909 0.00 0.00 42.08 4.30
4116 5908 2.037902 TCTAGGTTGACCGAATTGCACA 59.962 45.455 0.00 0.00 42.08 4.57
4193 5986 1.071605 GTAGTTGGCGAGTTGAGCAG 58.928 55.000 0.00 0.00 36.08 4.24
4196 5989 0.040958 GTTGGCGAGTTGAGCAGTTG 60.041 55.000 0.00 0.00 36.08 3.16
4251 6044 7.647715 GCACGTGCAATTATTCTATTACCATTT 59.352 33.333 34.52 0.00 41.59 2.32
4292 6113 9.037737 CACTCAAATTGTTGACTTCAATTCAAT 57.962 29.630 4.72 0.00 42.31 2.57
4334 6161 1.686587 TGACACTCCCTGTATATGCCG 59.313 52.381 0.00 0.00 31.03 5.69
4394 6221 3.138304 TCGTATGCTTGATATGGGTTGC 58.862 45.455 0.00 0.00 0.00 4.17
4397 6224 4.152402 CGTATGCTTGATATGGGTTGCTAC 59.848 45.833 0.00 0.00 0.00 3.58
4400 6227 5.366482 TGCTTGATATGGGTTGCTACTTA 57.634 39.130 0.00 0.00 0.00 2.24
4401 6228 5.368145 TGCTTGATATGGGTTGCTACTTAG 58.632 41.667 0.00 0.00 0.00 2.18
4428 6255 6.183347 AGTTCTGGATAAGGATGAAAACAGG 58.817 40.000 0.00 0.00 0.00 4.00
4429 6256 6.012508 AGTTCTGGATAAGGATGAAAACAGGA 60.013 38.462 0.00 0.00 0.00 3.86
4430 6257 5.994250 TCTGGATAAGGATGAAAACAGGAG 58.006 41.667 0.00 0.00 0.00 3.69
4500 6389 8.731605 TCGATATATCTGGACTTGTATTGAGAC 58.268 37.037 10.93 0.00 0.00 3.36
4504 6393 5.344743 TCTGGACTTGTATTGAGACCATC 57.655 43.478 0.00 0.00 38.08 3.51
4673 6562 6.662865 TTCCTGATAAAATGTTCCAAGCAA 57.337 33.333 0.00 0.00 0.00 3.91
4675 6564 5.774690 TCCTGATAAAATGTTCCAAGCAAGT 59.225 36.000 0.00 0.00 0.00 3.16
4676 6565 6.267471 TCCTGATAAAATGTTCCAAGCAAGTT 59.733 34.615 0.00 0.00 0.00 2.66
4700 6589 1.410882 GTCTCTAGCTCCACCCACATC 59.589 57.143 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.434652 CCTTTCTCGCTCTCCTTTATATAGGA 59.565 42.308 11.02 11.02 42.02 2.94
27 28 6.209788 ACCTTTCTCGCTCTCCTTTATATAGG 59.790 42.308 2.94 2.94 36.59 2.57
28 29 7.222000 ACCTTTCTCGCTCTCCTTTATATAG 57.778 40.000 0.00 0.00 0.00 1.31
29 30 7.069578 ACAACCTTTCTCGCTCTCCTTTATATA 59.930 37.037 0.00 0.00 0.00 0.86
30 31 6.127026 ACAACCTTTCTCGCTCTCCTTTATAT 60.127 38.462 0.00 0.00 0.00 0.86
31 32 5.187186 ACAACCTTTCTCGCTCTCCTTTATA 59.813 40.000 0.00 0.00 0.00 0.98
32 33 4.020128 ACAACCTTTCTCGCTCTCCTTTAT 60.020 41.667 0.00 0.00 0.00 1.40
33 34 3.323979 ACAACCTTTCTCGCTCTCCTTTA 59.676 43.478 0.00 0.00 0.00 1.85
34 35 2.104963 ACAACCTTTCTCGCTCTCCTTT 59.895 45.455 0.00 0.00 0.00 3.11
35 36 1.694696 ACAACCTTTCTCGCTCTCCTT 59.305 47.619 0.00 0.00 0.00 3.36
36 37 1.343069 ACAACCTTTCTCGCTCTCCT 58.657 50.000 0.00 0.00 0.00 3.69
37 38 2.171341 AACAACCTTTCTCGCTCTCC 57.829 50.000 0.00 0.00 0.00 3.71
38 39 3.312697 ACAAAACAACCTTTCTCGCTCTC 59.687 43.478 0.00 0.00 0.00 3.20
39 40 3.279434 ACAAAACAACCTTTCTCGCTCT 58.721 40.909 0.00 0.00 0.00 4.09
40 41 3.692791 ACAAAACAACCTTTCTCGCTC 57.307 42.857 0.00 0.00 0.00 5.03
41 42 3.769536 CAACAAAACAACCTTTCTCGCT 58.230 40.909 0.00 0.00 0.00 4.93
42 43 2.281498 GCAACAAAACAACCTTTCTCGC 59.719 45.455 0.00 0.00 0.00 5.03
43 44 3.506810 TGCAACAAAACAACCTTTCTCG 58.493 40.909 0.00 0.00 0.00 4.04
44 45 8.810652 TTATATGCAACAAAACAACCTTTCTC 57.189 30.769 0.00 0.00 0.00 2.87
45 46 8.637986 TCTTATATGCAACAAAACAACCTTTCT 58.362 29.630 0.00 0.00 0.00 2.52
46 47 8.810652 TCTTATATGCAACAAAACAACCTTTC 57.189 30.769 0.00 0.00 0.00 2.62
47 48 7.872483 CCTCTTATATGCAACAAAACAACCTTT 59.128 33.333 0.00 0.00 0.00 3.11
48 49 7.378181 CCTCTTATATGCAACAAAACAACCTT 58.622 34.615 0.00 0.00 0.00 3.50
49 50 6.071391 CCCTCTTATATGCAACAAAACAACCT 60.071 38.462 0.00 0.00 0.00 3.50
50 51 6.099341 CCCTCTTATATGCAACAAAACAACC 58.901 40.000 0.00 0.00 0.00 3.77
51 52 5.576774 GCCCTCTTATATGCAACAAAACAAC 59.423 40.000 0.00 0.00 0.00 3.32
52 53 5.621104 CGCCCTCTTATATGCAACAAAACAA 60.621 40.000 0.00 0.00 0.00 2.83
53 54 4.142491 CGCCCTCTTATATGCAACAAAACA 60.142 41.667 0.00 0.00 0.00 2.83
54 55 4.351192 CGCCCTCTTATATGCAACAAAAC 58.649 43.478 0.00 0.00 0.00 2.43
55 56 3.181491 GCGCCCTCTTATATGCAACAAAA 60.181 43.478 0.00 0.00 0.00 2.44
56 57 2.357637 GCGCCCTCTTATATGCAACAAA 59.642 45.455 0.00 0.00 0.00 2.83
57 58 1.946768 GCGCCCTCTTATATGCAACAA 59.053 47.619 0.00 0.00 0.00 2.83
58 59 1.134250 TGCGCCCTCTTATATGCAACA 60.134 47.619 4.18 0.00 0.00 3.33
59 60 1.593196 TGCGCCCTCTTATATGCAAC 58.407 50.000 4.18 0.00 0.00 4.17
60 61 2.153645 CATGCGCCCTCTTATATGCAA 58.846 47.619 4.18 0.00 35.78 4.08
73 74 0.663153 GGTACATTTCCTCATGCGCC 59.337 55.000 4.18 0.00 0.00 6.53
81 82 4.886579 ACGAAAAGTACGGTACATTTCCT 58.113 39.130 28.81 20.64 34.93 3.36
83 84 4.091945 GGGACGAAAAGTACGGTACATTTC 59.908 45.833 26.87 26.87 33.31 2.17
87 88 2.228822 GAGGGACGAAAAGTACGGTACA 59.771 50.000 19.62 0.00 33.31 2.90
100 101 2.330372 CGTTCGTGGAGAGGGACGA 61.330 63.158 0.00 0.00 42.61 4.20
101 102 2.178521 CGTTCGTGGAGAGGGACG 59.821 66.667 0.00 0.00 36.91 4.79
112 113 5.316167 TCCTATATGTATACCCACGTTCGT 58.684 41.667 0.00 0.00 0.00 3.85
114 115 7.263496 GGAATCCTATATGTATACCCACGTTC 58.737 42.308 0.00 0.00 0.00 3.95
115 116 6.127535 CGGAATCCTATATGTATACCCACGTT 60.128 42.308 0.00 0.00 0.00 3.99
118 119 6.786967 ACGGAATCCTATATGTATACCCAC 57.213 41.667 0.00 0.00 0.00 4.61
126 127 7.663827 TCGATTTGTAACGGAATCCTATATGT 58.336 34.615 0.00 0.00 0.00 2.29
141 142 3.287312 AGTCCGACGTTCGATTTGTAA 57.713 42.857 8.63 0.00 43.74 2.41
157 158 2.606272 CGTACGGGAATGCTAAAAGTCC 59.394 50.000 7.57 0.00 0.00 3.85
158 159 3.256558 ACGTACGGGAATGCTAAAAGTC 58.743 45.455 21.06 0.00 0.00 3.01
160 161 6.033196 CGATATACGTACGGGAATGCTAAAAG 59.967 42.308 21.06 0.00 37.22 2.27
162 163 5.181056 TCGATATACGTACGGGAATGCTAAA 59.819 40.000 21.06 0.00 43.13 1.85
167 168 4.675190 AGTCGATATACGTACGGGAATG 57.325 45.455 21.06 4.83 43.13 2.67
178 179 4.216687 AGTCAGCCAGCTAAGTCGATATAC 59.783 45.833 0.00 0.00 0.00 1.47
183 184 2.124277 TAGTCAGCCAGCTAAGTCGA 57.876 50.000 0.00 0.00 0.00 4.20
208 213 8.234546 AGATAAAATCGTTATTTTTCACTGCGT 58.765 29.630 1.80 0.00 41.50 5.24
209 214 8.601243 AGATAAAATCGTTATTTTTCACTGCG 57.399 30.769 1.80 0.00 41.50 5.18
238 243 4.442612 CCCTAGCTTGGATCATCGGATATG 60.443 50.000 16.43 0.00 32.67 1.78
241 246 1.905215 CCCTAGCTTGGATCATCGGAT 59.095 52.381 16.43 0.00 36.13 4.18
308 316 1.748591 GCCTCCATGGAAAGCGAGATT 60.749 52.381 17.00 0.00 38.35 2.40
442 451 0.704664 CCCCAGGTAAAAAGGAGGCT 59.295 55.000 0.00 0.00 0.00 4.58
499 512 7.919313 TCACCGCTTAATAGTTACTAATTCG 57.081 36.000 0.00 0.00 0.00 3.34
527 543 8.745590 GTTAGGGATTGGAGAGATAAGAGATAC 58.254 40.741 0.00 0.00 0.00 2.24
698 720 6.098124 AGAGAGAGAGAAAGAGAGAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
699 721 5.960811 AGAGAGAGAGAAAGAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
701 723 5.960811 AGAGAGAGAGAGAAAGAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
703 725 5.960811 AGAGAGAGAGAGAGAAAGAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
704 726 6.098124 AGAGAGAGAGAGAGAGAAAGAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
705 727 5.960811 AGAGAGAGAGAGAGAGAAAGAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
706 728 6.098124 AGAGAGAGAGAGAGAGAGAAAGAGAG 59.902 46.154 0.00 0.00 0.00 3.20
707 729 5.960811 AGAGAGAGAGAGAGAGAGAAAGAGA 59.039 44.000 0.00 0.00 0.00 3.10
708 730 6.098124 AGAGAGAGAGAGAGAGAGAGAAAGAG 59.902 46.154 0.00 0.00 0.00 2.85
709 731 5.960811 AGAGAGAGAGAGAGAGAGAGAAAGA 59.039 44.000 0.00 0.00 0.00 2.52
710 732 6.098124 AGAGAGAGAGAGAGAGAGAGAGAAAG 59.902 46.154 0.00 0.00 0.00 2.62
711 733 5.960811 AGAGAGAGAGAGAGAGAGAGAGAAA 59.039 44.000 0.00 0.00 0.00 2.52
712 734 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
713 735 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
714 736 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
715 737 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
716 738 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
717 739 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
718 740 4.280677 GGAGAGAGAGAGAGAGAGAGAGAG 59.719 54.167 0.00 0.00 0.00 3.20
719 741 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
720 742 3.963374 TGGAGAGAGAGAGAGAGAGAGAG 59.037 52.174 0.00 0.00 0.00 3.20
721 743 3.994317 TGGAGAGAGAGAGAGAGAGAGA 58.006 50.000 0.00 0.00 0.00 3.10
722 744 4.406972 TCTTGGAGAGAGAGAGAGAGAGAG 59.593 50.000 0.00 0.00 0.00 3.20
723 745 4.162320 GTCTTGGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 34.31 3.10
724 746 4.446371 GTCTTGGAGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 34.31 3.20
725 747 3.199946 GGTCTTGGAGAGAGAGAGAGAGA 59.800 52.174 0.00 0.00 34.31 3.10
726 748 3.054434 TGGTCTTGGAGAGAGAGAGAGAG 60.054 52.174 0.00 0.00 34.31 3.20
727 749 2.916269 TGGTCTTGGAGAGAGAGAGAGA 59.084 50.000 0.00 0.00 34.31 3.10
728 750 3.016736 GTGGTCTTGGAGAGAGAGAGAG 58.983 54.545 0.00 0.00 34.31 3.20
729 751 2.291282 GGTGGTCTTGGAGAGAGAGAGA 60.291 54.545 0.00 0.00 34.31 3.10
730 752 2.099405 GGTGGTCTTGGAGAGAGAGAG 58.901 57.143 0.00 0.00 34.31 3.20
731 753 1.429299 TGGTGGTCTTGGAGAGAGAGA 59.571 52.381 0.00 0.00 34.31 3.10
732 754 1.548269 GTGGTGGTCTTGGAGAGAGAG 59.452 57.143 0.00 0.00 34.31 3.20
733 755 1.633774 GTGGTGGTCTTGGAGAGAGA 58.366 55.000 0.00 0.00 34.31 3.10
734 756 0.610687 GGTGGTGGTCTTGGAGAGAG 59.389 60.000 0.00 0.00 34.31 3.20
735 757 0.105194 TGGTGGTGGTCTTGGAGAGA 60.105 55.000 0.00 0.00 0.00 3.10
736 758 0.322975 CTGGTGGTGGTCTTGGAGAG 59.677 60.000 0.00 0.00 0.00 3.20
737 759 1.768684 GCTGGTGGTGGTCTTGGAGA 61.769 60.000 0.00 0.00 0.00 3.71
738 760 1.302832 GCTGGTGGTGGTCTTGGAG 60.303 63.158 0.00 0.00 0.00 3.86
739 761 0.472925 TAGCTGGTGGTGGTCTTGGA 60.473 55.000 0.00 0.00 0.00 3.53
740 762 0.036010 CTAGCTGGTGGTGGTCTTGG 60.036 60.000 0.00 0.00 0.00 3.61
741 763 0.976641 TCTAGCTGGTGGTGGTCTTG 59.023 55.000 0.00 0.00 0.00 3.02
742 764 1.556911 CATCTAGCTGGTGGTGGTCTT 59.443 52.381 0.00 0.00 0.00 3.01
979 1003 1.530891 CGCCTCCCTCCCTATCGAA 60.531 63.158 0.00 0.00 0.00 3.71
1038 1068 3.093172 TGGTGGTGGTCTGGCACA 61.093 61.111 0.00 0.00 0.00 4.57
1041 1071 3.850098 CTGGTGGTGGTGGTCTGGC 62.850 68.421 0.00 0.00 0.00 4.85
1802 1854 9.604626 GCTAAAGCTTTACATAATCAGCATAAG 57.395 33.333 14.96 2.76 38.21 1.73
1839 1891 7.716560 AGATCTTGGCTTTTTGCAGTTAAAAAT 59.283 29.630 0.00 0.00 45.15 1.82
1856 1908 8.532977 TGCAGTTAAAAATAAAAGATCTTGGC 57.467 30.769 9.17 0.00 0.00 4.52
1866 1918 9.167311 TCTTGGCTTTTTGCAGTTAAAAATAAA 57.833 25.926 0.00 0.00 45.15 1.40
1867 1919 8.723942 TCTTGGCTTTTTGCAGTTAAAAATAA 57.276 26.923 0.00 0.00 45.15 1.40
1869 1921 7.716560 AGATCTTGGCTTTTTGCAGTTAAAAAT 59.283 29.630 0.00 0.00 45.15 1.82
1870 1922 7.011295 CAGATCTTGGCTTTTTGCAGTTAAAAA 59.989 33.333 0.00 0.00 45.15 1.94
1871 1923 6.479660 CAGATCTTGGCTTTTTGCAGTTAAAA 59.520 34.615 0.00 0.00 45.15 1.52
1872 1924 5.984926 CAGATCTTGGCTTTTTGCAGTTAAA 59.015 36.000 0.00 0.00 45.15 1.52
1873 1925 5.509501 CCAGATCTTGGCTTTTTGCAGTTAA 60.510 40.000 0.00 0.00 45.15 2.01
1874 1926 4.022068 CCAGATCTTGGCTTTTTGCAGTTA 60.022 41.667 0.00 0.00 45.15 2.24
1875 1927 3.243975 CCAGATCTTGGCTTTTTGCAGTT 60.244 43.478 0.00 0.00 45.15 3.16
1876 1928 2.298163 CCAGATCTTGGCTTTTTGCAGT 59.702 45.455 0.00 0.00 45.15 4.40
1877 1929 2.955614 CCAGATCTTGGCTTTTTGCAG 58.044 47.619 0.00 0.00 45.15 4.41
1911 1963 1.982913 GCCAATTTAAGCGGAACAACG 59.017 47.619 0.00 0.00 0.00 4.10
1912 1964 3.297830 AGCCAATTTAAGCGGAACAAC 57.702 42.857 0.00 0.00 0.00 3.32
1914 1966 3.319405 TCAAAGCCAATTTAAGCGGAACA 59.681 39.130 0.00 0.00 0.00 3.18
1915 1967 3.908213 TCAAAGCCAATTTAAGCGGAAC 58.092 40.909 0.00 0.00 0.00 3.62
1916 1968 4.799564 ATCAAAGCCAATTTAAGCGGAA 57.200 36.364 0.00 0.00 0.00 4.30
1917 1969 4.799564 AATCAAAGCCAATTTAAGCGGA 57.200 36.364 0.00 0.00 0.00 5.54
1918 1970 6.099341 AGTTAATCAAAGCCAATTTAAGCGG 58.901 36.000 0.00 0.00 0.00 5.52
1919 1971 7.328249 TCAAGTTAATCAAAGCCAATTTAAGCG 59.672 33.333 0.00 0.00 0.00 4.68
1920 1972 8.435430 GTCAAGTTAATCAAAGCCAATTTAAGC 58.565 33.333 0.00 0.00 0.00 3.09
1931 1985 5.682943 TGTTCCGGTCAAGTTAATCAAAG 57.317 39.130 0.00 0.00 0.00 2.77
1965 2020 7.019388 AGATTACCTATTATCAGCTCAAGGGA 58.981 38.462 0.00 0.00 0.00 4.20
1977 2032 6.665992 TCGGTTGCTCAGATTACCTATTAT 57.334 37.500 0.00 0.00 0.00 1.28
1978 2033 6.474140 TTCGGTTGCTCAGATTACCTATTA 57.526 37.500 0.00 0.00 0.00 0.98
1979 2034 5.353394 TTCGGTTGCTCAGATTACCTATT 57.647 39.130 0.00 0.00 0.00 1.73
2142 2197 3.352447 GCAAGCGCTCTAGTCATGA 57.648 52.632 12.06 0.00 34.30 3.07
2254 2315 9.403110 CTTGGCTAAATTATTGCTCATGTAATC 57.597 33.333 0.00 0.00 31.22 1.75
2268 2329 7.339466 GGAGAATTTGAGACCTTGGCTAAATTA 59.661 37.037 0.00 0.00 30.50 1.40
2339 2408 4.023193 CACCTAAAACCACAAAGAGCGATT 60.023 41.667 0.00 0.00 0.00 3.34
2352 2421 5.527214 AGAAATTTTGCAAGCACCTAAAACC 59.473 36.000 0.00 0.00 0.00 3.27
2379 2450 6.015772 GGAATACAAGGAAAAGTTGTGGCTAA 60.016 38.462 0.00 0.00 38.58 3.09
2402 2473 0.250989 CCTAAGTTTGTTGGGCGGGA 60.251 55.000 0.00 0.00 0.00 5.14
2405 2476 2.178912 TCTCCTAAGTTTGTTGGGCG 57.821 50.000 0.00 0.00 0.00 6.13
2455 2526 9.565213 GGCACTAACTAACTTGTATATATACCG 57.435 37.037 18.20 12.34 32.33 4.02
2468 2539 6.084326 CACAAATTTGGGCACTAACTAACT 57.916 37.500 21.74 0.00 0.00 2.24
2582 2653 0.593128 CTGGCAAGAACGGTGAAAGG 59.407 55.000 0.00 0.00 0.00 3.11
2666 2738 6.214819 ACGTTGGAACCTATATATGCCCTATT 59.785 38.462 0.00 0.00 0.00 1.73
2778 2948 3.456277 AGAGTTGAAACTGAAGGAGGTGT 59.544 43.478 0.00 0.00 39.88 4.16
2815 2985 5.376854 AGTAGTACAGCAAAATGGCTTTG 57.623 39.130 2.52 0.00 42.71 2.77
2841 3011 5.744300 GCAGCCATCAGAGGTCATATAAGTT 60.744 44.000 0.00 0.00 0.00 2.66
2886 3056 9.182933 TCACAAAACAAAACAAAAGTACTACAC 57.817 29.630 0.00 0.00 0.00 2.90
2932 3102 9.759259 ACGTGAACTAAAAACAAACTTACTAAC 57.241 29.630 0.00 0.00 0.00 2.34
2944 3114 5.459110 TCAGTGTCACGTGAACTAAAAAC 57.541 39.130 21.95 6.30 0.00 2.43
3357 3527 0.391528 CCGACAGTGATGTCATGGCA 60.392 55.000 0.60 0.60 38.65 4.92
3358 3528 1.709147 GCCGACAGTGATGTCATGGC 61.709 60.000 10.25 10.25 37.85 4.40
3551 3727 1.227060 GCCATTGCCGAGGAATTGC 60.227 57.895 0.00 0.00 0.00 3.56
3585 3761 3.417275 AATCGCCCGACTCAGCTCG 62.417 63.158 0.00 0.00 0.00 5.03
3711 3887 2.627699 TGTGCAAACCTTTGGAGATTCC 59.372 45.455 0.00 0.00 39.20 3.01
3819 3995 2.814280 AGCCCGGATAATTGTCTACG 57.186 50.000 0.73 0.00 0.00 3.51
4047 4438 4.529377 AGCAAATTGGACACTTTCATGGAT 59.471 37.500 0.00 0.00 0.00 3.41
4059 4450 5.126067 TGCCTTAGAGATAGCAAATTGGAC 58.874 41.667 0.00 0.00 30.97 4.02
4109 5901 4.034510 GCTACGAGCTTAAGATTGTGCAAT 59.965 41.667 21.39 0.00 38.45 3.56
4164 5956 5.607119 ACTCGCCAACTACACATTTTAAG 57.393 39.130 0.00 0.00 0.00 1.85
4210 6003 5.416083 TGCACGTGCTAGAAACTATGTTAT 58.584 37.500 37.59 0.00 42.66 1.89
4211 6004 4.811908 TGCACGTGCTAGAAACTATGTTA 58.188 39.130 37.59 12.53 42.66 2.41
4251 6044 7.884877 ACAATTTGAGTGATAGGTTCTTCATCA 59.115 33.333 2.79 0.00 0.00 3.07
4255 6048 8.017946 GTCAACAATTTGAGTGATAGGTTCTTC 58.982 37.037 2.79 0.00 42.60 2.87
4292 6113 8.044309 TGTCAAATTCGGAAGACCAAGATTATA 58.956 33.333 6.26 0.00 41.84 0.98
4305 6126 2.105821 ACAGGGAGTGTCAAATTCGGAA 59.894 45.455 0.00 0.00 31.90 4.30
4368 6195 5.181009 ACCCATATCAAGCATACGATCATG 58.819 41.667 0.00 0.00 0.00 3.07
4400 6227 8.383175 TGTTTTCATCCTTATCCAGAACTAACT 58.617 33.333 0.00 0.00 0.00 2.24
4401 6228 8.561738 TGTTTTCATCCTTATCCAGAACTAAC 57.438 34.615 0.00 0.00 0.00 2.34
4668 6557 4.081917 GGAGCTAGAGACACTAACTTGCTT 60.082 45.833 0.00 0.00 41.09 3.91
4673 6562 3.358118 GGTGGAGCTAGAGACACTAACT 58.642 50.000 0.00 0.00 34.42 2.24
4675 6564 2.042569 TGGGTGGAGCTAGAGACACTAA 59.957 50.000 0.00 0.00 34.42 2.24
4676 6565 1.639108 TGGGTGGAGCTAGAGACACTA 59.361 52.381 0.00 0.00 34.42 2.74
4700 6589 3.047877 GGTTGGAGGGACGTTGCG 61.048 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.