Multiple sequence alignment - TraesCS7A01G317800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G317800 chr7A 100.000 2531 0 0 1 2531 458326294 458323764 0.000000e+00 4674.0
1 TraesCS7A01G317800 chr7A 97.297 37 1 0 2235 2271 108822560 108822524 2.100000e-06 63.9
2 TraesCS7A01G317800 chr6A 90.533 919 80 4 1 914 74161197 74162113 0.000000e+00 1208.0
3 TraesCS7A01G317800 chr6A 93.913 690 37 3 913 1598 74162217 74162905 0.000000e+00 1037.0
4 TraesCS7A01G317800 chr6A 85.751 386 51 3 1612 1995 74163026 74163409 3.030000e-109 405.0
5 TraesCS7A01G317800 chr6A 82.031 128 17 3 2089 2211 569599749 569599875 1.240000e-18 104.0
6 TraesCS7A01G317800 chr6A 93.023 43 3 0 377 419 543371283 543371325 2.100000e-06 63.9
7 TraesCS7A01G317800 chrUn 90.077 907 82 3 67 965 86346580 86345674 0.000000e+00 1170.0
8 TraesCS7A01G317800 chrUn 90.336 745 61 7 1607 2346 86340220 86339482 0.000000e+00 966.0
9 TraesCS7A01G317800 chrUn 94.372 462 23 2 1148 1606 86340790 86340329 0.000000e+00 706.0
10 TraesCS7A01G317800 chrUn 84.103 195 7 4 965 1159 86341224 86341054 1.560000e-37 167.0
11 TraesCS7A01G317800 chrUn 83.186 113 12 5 2080 2187 63676558 63676668 2.070000e-16 97.1
12 TraesCS7A01G317800 chr7D 93.234 606 35 4 1007 1607 400278476 400277872 0.000000e+00 887.0
13 TraesCS7A01G317800 chr7D 88.827 716 66 5 1 714 400279844 400279141 0.000000e+00 867.0
14 TraesCS7A01G317800 chr7D 95.628 366 12 3 659 1021 400279140 400278776 3.630000e-163 584.0
15 TraesCS7A01G317800 chr7D 86.189 391 48 5 1612 1998 400277760 400277372 3.890000e-113 418.0
16 TraesCS7A01G317800 chr7D 76.235 324 54 19 65 374 215786799 215787113 1.570000e-32 150.0
17 TraesCS7A01G317800 chr7D 95.000 40 2 0 380 419 79377487 79377448 2.100000e-06 63.9
18 TraesCS7A01G317800 chr4D 90.000 100 10 0 309 408 8666149 8666248 2.040000e-26 130.0
19 TraesCS7A01G317800 chr4A 84.800 125 11 5 2089 2207 285484632 285484510 4.420000e-23 119.0
20 TraesCS7A01G317800 chr4B 86.239 109 13 2 2080 2187 254413030 254413137 1.590000e-22 117.0
21 TraesCS7A01G317800 chr4B 97.297 37 1 0 2235 2271 267654262 267654298 2.100000e-06 63.9
22 TraesCS7A01G317800 chr1A 87.755 98 9 3 2091 2187 266183225 266183130 7.400000e-21 111.0
23 TraesCS7A01G317800 chr6D 80.132 151 26 3 333 483 21918651 21918505 2.660000e-20 110.0
24 TraesCS7A01G317800 chr3D 87.778 90 11 0 322 411 7420612 7420701 3.440000e-19 106.0
25 TraesCS7A01G317800 chr2B 83.478 115 14 5 2078 2191 227931692 227931802 4.450000e-18 102.0
26 TraesCS7A01G317800 chr3A 80.451 133 18 5 2080 2206 50075133 50075263 7.450000e-16 95.3
27 TraesCS7A01G317800 chr6B 76.364 165 39 0 1 165 412571148 412571312 3.470000e-14 89.8
28 TraesCS7A01G317800 chr3B 81.982 111 14 3 2106 2211 698383205 698383096 3.470000e-14 89.8
29 TraesCS7A01G317800 chr3B 94.872 39 2 0 381 419 641623407 641623445 7.560000e-06 62.1
30 TraesCS7A01G317800 chr5D 88.333 60 2 1 2218 2272 339723317 339723376 1.620000e-07 67.6
31 TraesCS7A01G317800 chr1B 97.368 38 1 0 2235 2272 328260962 328260999 5.840000e-07 65.8
32 TraesCS7A01G317800 chr1B 87.931 58 2 1 2220 2272 121735341 121735284 2.100000e-06 63.9
33 TraesCS7A01G317800 chr5A 97.297 37 1 0 2235 2271 529843106 529843142 2.100000e-06 63.9
34 TraesCS7A01G317800 chr5A 94.737 38 2 0 2235 2272 5251933 5251896 2.720000e-05 60.2
35 TraesCS7A01G317800 chr2D 86.207 58 3 1 2220 2272 31603791 31603848 9.780000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G317800 chr7A 458323764 458326294 2530 True 4674.000000 4674 100.000000 1 2531 1 chr7A.!!$R2 2530
1 TraesCS7A01G317800 chr6A 74161197 74163409 2212 False 883.333333 1208 90.065667 1 1995 3 chr6A.!!$F3 1994
2 TraesCS7A01G317800 chrUn 86345674 86346580 906 True 1170.000000 1170 90.077000 67 965 1 chrUn.!!$R1 898
3 TraesCS7A01G317800 chrUn 86339482 86341224 1742 True 613.000000 966 89.603667 965 2346 3 chrUn.!!$R2 1381
4 TraesCS7A01G317800 chr7D 400277372 400279844 2472 True 689.000000 887 90.969500 1 1998 4 chr7D.!!$R2 1997

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.535335 GGCGGTAGGACAAGACATGA 59.465 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1775 2669 0.462759 GCGCTGCTCCCTGAGTTTAT 60.463 55.0 0.0 0.0 31.39 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.407437 CCACTAGGGCACTAAAGGCTG 60.407 57.143 0.00 0.00 0.00 4.85
98 99 1.153568 CTCCTTCGCGAATGGCAGA 60.154 57.895 23.67 12.77 43.84 4.26
105 106 2.325082 GCGAATGGCAGACAACCGT 61.325 57.895 0.00 0.00 42.87 4.83
186 187 2.221055 GCATAAACGATGAAGGCGGTAG 59.779 50.000 0.00 0.00 37.82 3.18
188 189 0.899720 AAACGATGAAGGCGGTAGGA 59.100 50.000 0.00 0.00 0.00 2.94
196 197 1.207329 GAAGGCGGTAGGACAAGACAT 59.793 52.381 0.00 0.00 0.00 3.06
198 199 0.535335 GGCGGTAGGACAAGACATGA 59.465 55.000 0.00 0.00 0.00 3.07
219 220 2.669229 TCACGCGTACGAGGTGGA 60.669 61.111 28.07 18.32 43.93 4.02
228 229 3.677648 CGAGGTGGACGTCCGGTT 61.678 66.667 28.70 16.42 39.43 4.44
233 248 1.079612 GTGGACGTCCGGTTTAGGG 60.080 63.158 28.70 0.00 39.43 3.53
353 368 6.961576 TGAATTTCGTCCGTTTAGTTCAAAT 58.038 32.000 0.00 0.00 0.00 2.32
361 376 6.596703 GTCCGTTTAGTTCAAATAGTGGTTC 58.403 40.000 0.00 0.00 0.00 3.62
388 406 0.816018 TGCGAACAACGTTGGATGGT 60.816 50.000 30.34 3.87 44.60 3.55
423 441 3.303135 TCCGCGCACTGGTTCTCT 61.303 61.111 8.75 0.00 0.00 3.10
428 446 0.601311 GCGCACTGGTTCTCTTGTCT 60.601 55.000 0.30 0.00 0.00 3.41
432 450 1.131638 ACTGGTTCTCTTGTCTGCCA 58.868 50.000 0.00 0.00 0.00 4.92
445 463 3.071837 TGCCACGGACGGATGCTA 61.072 61.111 0.00 0.00 0.00 3.49
449 467 1.101635 CCACGGACGGATGCTAGAGA 61.102 60.000 0.00 0.00 0.00 3.10
596 617 7.876936 AAGCATATATTTGGGCTAGATCATG 57.123 36.000 0.00 0.00 35.11 3.07
619 640 4.927425 GGCGACTGAGTTTGTACTGATTTA 59.073 41.667 0.00 0.00 33.84 1.40
779 861 9.887629 ATAATGCATTCATTTTACACCATCAAA 57.112 25.926 16.86 0.00 42.51 2.69
877 959 8.764524 TTATTTGTAACAAATTTGATTCCCCG 57.235 30.769 24.64 0.00 0.00 5.73
1050 1552 5.189145 ACCGATCATTGAAAAGGTACTAGGT 59.811 40.000 8.66 0.00 38.49 3.08
1059 1561 1.636148 AGGTACTAGGTTGTTGCGGA 58.364 50.000 0.00 0.00 36.02 5.54
1096 1601 2.180276 ACTAGTGCCTCTCGAAATGGT 58.820 47.619 0.00 0.00 0.00 3.55
1124 1629 1.078426 GAAGAAAGCAGGCGCCCTA 60.078 57.895 26.15 0.00 39.83 3.53
1172 1952 2.451490 ACTCTTCTCTCCTCATGCGAA 58.549 47.619 0.00 0.00 0.00 4.70
1380 2162 0.644937 AGATGCTCTCCCCCTACCTT 59.355 55.000 0.00 0.00 0.00 3.50
1456 2238 3.571119 CGCTGGAGGAAAGTGCAG 58.429 61.111 0.00 0.00 38.84 4.41
1469 2251 1.557099 AGTGCAGTTCCTACGATGGA 58.443 50.000 0.00 0.00 0.00 3.41
1532 2316 9.593134 TTAAACAAATGGCTCGCATAATAAAAT 57.407 25.926 0.00 0.00 0.00 1.82
1535 2319 9.762933 AACAAATGGCTCGCATAATAAAATAAT 57.237 25.926 0.00 0.00 0.00 1.28
1607 2391 8.321621 TCTAATCCTATATCTAGCCTACTCGT 57.678 38.462 0.00 0.00 0.00 4.18
1608 2392 9.431690 TCTAATCCTATATCTAGCCTACTCGTA 57.568 37.037 0.00 0.00 0.00 3.43
1610 2394 6.864151 TCCTATATCTAGCCTACTCGTACA 57.136 41.667 0.00 0.00 0.00 2.90
1611 2395 7.250032 TCCTATATCTAGCCTACTCGTACAA 57.750 40.000 0.00 0.00 0.00 2.41
1613 2397 8.327271 TCCTATATCTAGCCTACTCGTACAATT 58.673 37.037 0.00 0.00 0.00 2.32
1614 2398 9.610705 CCTATATCTAGCCTACTCGTACAATTA 57.389 37.037 0.00 0.00 0.00 1.40
1618 2402 6.501781 TCTAGCCTACTCGTACAATTAAAGC 58.498 40.000 0.00 0.00 0.00 3.51
1619 2403 5.080969 AGCCTACTCGTACAATTAAAGCA 57.919 39.130 0.00 0.00 0.00 3.91
1624 2515 5.043189 ACTCGTACAATTAAAGCAAAGCC 57.957 39.130 0.00 0.00 0.00 4.35
1749 2643 7.100409 CCGAACCTTATCTTTTTCTCTCTTCT 58.900 38.462 0.00 0.00 0.00 2.85
1760 2654 4.982241 TTCTCTCTTCTTCCCACATGTT 57.018 40.909 0.00 0.00 0.00 2.71
1769 2663 3.056821 TCTTCCCACATGTTAGTGACTCG 60.057 47.826 0.00 0.00 42.05 4.18
1775 2669 3.057526 CACATGTTAGTGACTCGGTCTGA 60.058 47.826 0.00 0.00 42.05 3.27
1845 2741 2.281208 GCGCCAGGTAACCACACA 60.281 61.111 0.00 0.00 37.17 3.72
1874 2770 1.811266 CAACAGATCCTCCACGCGG 60.811 63.158 12.47 0.00 0.00 6.46
1923 2819 0.106719 CGCACATACCCAAATCCCCT 60.107 55.000 0.00 0.00 0.00 4.79
2015 2911 1.997874 GGGCCTCCTGACACCATCT 60.998 63.158 0.84 0.00 0.00 2.90
2016 2912 1.566298 GGGCCTCCTGACACCATCTT 61.566 60.000 0.84 0.00 0.00 2.40
2017 2913 1.204146 GGCCTCCTGACACCATCTTA 58.796 55.000 0.00 0.00 0.00 2.10
2023 2919 2.435805 TCCTGACACCATCTTAGGATGC 59.564 50.000 9.28 0.00 45.73 3.91
2029 2925 0.947244 CCATCTTAGGATGCCGTTGC 59.053 55.000 9.28 0.00 45.73 4.17
2053 2949 2.436646 GGACCACCATCGTGCCAG 60.437 66.667 0.00 0.00 38.79 4.85
2056 2952 2.360350 CCACCATCGTGCCAGCTT 60.360 61.111 0.00 0.00 38.79 3.74
2059 2955 2.046023 CCATCGTGCCAGCTTGGA 60.046 61.111 6.40 0.00 40.96 3.53
2071 2967 1.671379 GCTTGGACTCACGGAACCC 60.671 63.158 0.00 0.00 0.00 4.11
2094 2991 5.452776 CCTTGTATAAGGCTGTCCGTAATGA 60.453 44.000 5.20 0.00 46.47 2.57
2125 3022 1.004628 AGGTAGTGTCATGCATGCCAA 59.995 47.619 22.25 6.75 0.00 4.52
2131 3028 2.947652 GTGTCATGCATGCCAACTAGAT 59.052 45.455 22.25 0.00 0.00 1.98
2286 3183 6.657836 ATGTTACTACTACCGAAATTGCAC 57.342 37.500 0.00 0.00 0.00 4.57
2299 3196 5.469479 CGAAATTGCACTTCCTATGGTTTT 58.531 37.500 0.00 0.00 0.00 2.43
2354 3251 9.860898 ACAGAAATTCTTTGTTTATATTCTGCC 57.139 29.630 11.00 0.00 43.80 4.85
2355 3252 9.013490 CAGAAATTCTTTGTTTATATTCTGCCG 57.987 33.333 0.00 0.00 37.01 5.69
2356 3253 7.702348 AGAAATTCTTTGTTTATATTCTGCCGC 59.298 33.333 0.00 0.00 0.00 6.53
2357 3254 6.699575 ATTCTTTGTTTATATTCTGCCGCT 57.300 33.333 0.00 0.00 0.00 5.52
2358 3255 7.801716 ATTCTTTGTTTATATTCTGCCGCTA 57.198 32.000 0.00 0.00 0.00 4.26
2359 3256 7.801716 TTCTTTGTTTATATTCTGCCGCTAT 57.198 32.000 0.00 0.00 0.00 2.97
2360 3257 7.189693 TCTTTGTTTATATTCTGCCGCTATG 57.810 36.000 0.00 0.00 0.00 2.23
2361 3258 5.356882 TTGTTTATATTCTGCCGCTATGC 57.643 39.130 0.00 0.00 0.00 3.14
2362 3259 4.641396 TGTTTATATTCTGCCGCTATGCT 58.359 39.130 0.00 0.00 0.00 3.79
2363 3260 5.063204 TGTTTATATTCTGCCGCTATGCTT 58.937 37.500 0.00 0.00 0.00 3.91
2364 3261 5.049474 TGTTTATATTCTGCCGCTATGCTTG 60.049 40.000 0.00 0.00 0.00 4.01
2365 3262 2.620251 TATTCTGCCGCTATGCTTGT 57.380 45.000 0.00 0.00 0.00 3.16
2366 3263 1.303309 ATTCTGCCGCTATGCTTGTC 58.697 50.000 0.00 0.00 0.00 3.18
2367 3264 0.036483 TTCTGCCGCTATGCTTGTCA 60.036 50.000 0.00 0.00 0.00 3.58
2368 3265 0.036483 TCTGCCGCTATGCTTGTCAA 60.036 50.000 0.00 0.00 0.00 3.18
2369 3266 1.019673 CTGCCGCTATGCTTGTCAAT 58.980 50.000 0.00 0.00 0.00 2.57
2370 3267 1.402968 CTGCCGCTATGCTTGTCAATT 59.597 47.619 0.00 0.00 0.00 2.32
2371 3268 1.401552 TGCCGCTATGCTTGTCAATTC 59.598 47.619 0.00 0.00 0.00 2.17
2372 3269 1.672881 GCCGCTATGCTTGTCAATTCT 59.327 47.619 0.00 0.00 0.00 2.40
2373 3270 2.286654 GCCGCTATGCTTGTCAATTCTC 60.287 50.000 0.00 0.00 0.00 2.87
2374 3271 2.938451 CCGCTATGCTTGTCAATTCTCA 59.062 45.455 0.00 0.00 0.00 3.27
2375 3272 3.374988 CCGCTATGCTTGTCAATTCTCAA 59.625 43.478 0.00 0.00 0.00 3.02
2376 3273 4.036027 CCGCTATGCTTGTCAATTCTCAAT 59.964 41.667 0.00 0.00 0.00 2.57
2377 3274 4.968181 CGCTATGCTTGTCAATTCTCAATG 59.032 41.667 0.00 0.00 0.00 2.82
2378 3275 5.220719 CGCTATGCTTGTCAATTCTCAATGA 60.221 40.000 0.00 0.00 0.00 2.57
2379 3276 6.512903 CGCTATGCTTGTCAATTCTCAATGAT 60.513 38.462 0.00 0.00 0.00 2.45
2380 3277 7.307573 CGCTATGCTTGTCAATTCTCAATGATA 60.308 37.037 0.00 0.00 0.00 2.15
2381 3278 8.512956 GCTATGCTTGTCAATTCTCAATGATAT 58.487 33.333 0.00 0.00 0.00 1.63
2382 3279 9.827411 CTATGCTTGTCAATTCTCAATGATATG 57.173 33.333 0.00 0.00 0.00 1.78
2383 3280 7.868906 TGCTTGTCAATTCTCAATGATATGA 57.131 32.000 0.00 0.00 0.00 2.15
2384 3281 8.459911 TGCTTGTCAATTCTCAATGATATGAT 57.540 30.769 0.00 0.00 0.00 2.45
2385 3282 8.565416 TGCTTGTCAATTCTCAATGATATGATC 58.435 33.333 0.00 0.00 0.00 2.92
2386 3283 8.021973 GCTTGTCAATTCTCAATGATATGATCC 58.978 37.037 0.00 0.00 0.00 3.36
2387 3284 8.983702 TTGTCAATTCTCAATGATATGATCCA 57.016 30.769 0.00 0.00 0.00 3.41
2388 3285 9.582648 TTGTCAATTCTCAATGATATGATCCAT 57.417 29.630 0.00 0.00 0.00 3.41
2394 3291 9.668497 ATTCTCAATGATATGATCCATACACAG 57.332 33.333 0.00 0.00 0.00 3.66
2395 3292 8.426569 TCTCAATGATATGATCCATACACAGA 57.573 34.615 0.00 0.00 0.00 3.41
2396 3293 8.873144 TCTCAATGATATGATCCATACACAGAA 58.127 33.333 0.00 0.00 0.00 3.02
2397 3294 9.498176 CTCAATGATATGATCCATACACAGAAA 57.502 33.333 0.00 0.00 0.00 2.52
2417 3314 7.649533 AGAAATTCTGAATGACATGCCATAA 57.350 32.000 3.22 0.00 0.00 1.90
2418 3315 8.246430 AGAAATTCTGAATGACATGCCATAAT 57.754 30.769 3.22 0.00 0.00 1.28
2419 3316 8.358148 AGAAATTCTGAATGACATGCCATAATC 58.642 33.333 3.22 0.00 0.00 1.75
2420 3317 7.834881 AATTCTGAATGACATGCCATAATCT 57.165 32.000 3.22 0.00 0.00 2.40
2421 3318 6.628919 TTCTGAATGACATGCCATAATCTG 57.371 37.500 0.00 0.00 0.00 2.90
2422 3319 5.687780 TCTGAATGACATGCCATAATCTGT 58.312 37.500 0.00 0.00 0.00 3.41
2423 3320 5.529800 TCTGAATGACATGCCATAATCTGTG 59.470 40.000 0.00 0.00 0.00 3.66
2424 3321 5.195185 TGAATGACATGCCATAATCTGTGT 58.805 37.500 0.00 0.00 0.00 3.72
2425 3322 5.653330 TGAATGACATGCCATAATCTGTGTT 59.347 36.000 0.00 0.00 0.00 3.32
2426 3323 6.153170 TGAATGACATGCCATAATCTGTGTTT 59.847 34.615 0.00 0.00 0.00 2.83
2427 3324 5.313520 TGACATGCCATAATCTGTGTTTG 57.686 39.130 0.00 0.00 0.00 2.93
2428 3325 4.158209 TGACATGCCATAATCTGTGTTTGG 59.842 41.667 0.00 0.00 0.00 3.28
2429 3326 3.448301 ACATGCCATAATCTGTGTTTGGG 59.552 43.478 0.00 0.00 0.00 4.12
2430 3327 3.448093 TGCCATAATCTGTGTTTGGGA 57.552 42.857 0.00 0.00 0.00 4.37
2431 3328 3.355378 TGCCATAATCTGTGTTTGGGAG 58.645 45.455 0.00 0.00 0.00 4.30
2432 3329 2.689983 GCCATAATCTGTGTTTGGGAGG 59.310 50.000 0.00 0.00 0.00 4.30
2433 3330 3.877735 GCCATAATCTGTGTTTGGGAGGT 60.878 47.826 0.00 0.00 0.00 3.85
2434 3331 4.344104 CCATAATCTGTGTTTGGGAGGTT 58.656 43.478 0.00 0.00 0.00 3.50
2435 3332 4.399303 CCATAATCTGTGTTTGGGAGGTTC 59.601 45.833 0.00 0.00 0.00 3.62
2436 3333 3.593442 AATCTGTGTTTGGGAGGTTCA 57.407 42.857 0.00 0.00 0.00 3.18
2437 3334 2.341846 TCTGTGTTTGGGAGGTTCAC 57.658 50.000 0.00 0.00 0.00 3.18
2438 3335 1.843851 TCTGTGTTTGGGAGGTTCACT 59.156 47.619 0.00 0.00 0.00 3.41
2439 3336 2.158813 TCTGTGTTTGGGAGGTTCACTC 60.159 50.000 0.00 0.00 45.84 3.51
2440 3337 1.843851 TGTGTTTGGGAGGTTCACTCT 59.156 47.619 0.00 0.00 45.83 3.24
2446 3343 1.931635 GGGAGGTTCACTCTCTGTCT 58.068 55.000 0.00 0.00 43.75 3.41
2447 3344 2.252714 GGGAGGTTCACTCTCTGTCTT 58.747 52.381 0.00 0.00 43.75 3.01
2448 3345 2.635427 GGGAGGTTCACTCTCTGTCTTT 59.365 50.000 0.00 0.00 43.75 2.52
2449 3346 3.556004 GGGAGGTTCACTCTCTGTCTTTG 60.556 52.174 0.00 0.00 43.75 2.77
2450 3347 3.322254 GGAGGTTCACTCTCTGTCTTTGA 59.678 47.826 0.00 0.00 45.83 2.69
2451 3348 4.555262 GAGGTTCACTCTCTGTCTTTGAG 58.445 47.826 0.00 0.00 43.14 3.02
2452 3349 4.219115 AGGTTCACTCTCTGTCTTTGAGA 58.781 43.478 0.00 0.00 38.13 3.27
2453 3350 4.651503 AGGTTCACTCTCTGTCTTTGAGAA 59.348 41.667 0.00 0.00 39.69 2.87
2454 3351 4.987912 GGTTCACTCTCTGTCTTTGAGAAG 59.012 45.833 0.00 0.00 39.69 2.85
2455 3352 5.452636 GGTTCACTCTCTGTCTTTGAGAAGT 60.453 44.000 0.00 0.00 39.69 3.01
2456 3353 6.239064 GGTTCACTCTCTGTCTTTGAGAAGTA 60.239 42.308 0.00 0.00 39.69 2.24
2457 3354 6.320494 TCACTCTCTGTCTTTGAGAAGTAC 57.680 41.667 0.00 0.00 39.69 2.73
2458 3355 5.049336 TCACTCTCTGTCTTTGAGAAGTACG 60.049 44.000 0.00 0.00 39.69 3.67
2459 3356 4.822896 ACTCTCTGTCTTTGAGAAGTACGT 59.177 41.667 0.00 0.00 39.69 3.57
2460 3357 5.299782 ACTCTCTGTCTTTGAGAAGTACGTT 59.700 40.000 0.00 0.00 39.69 3.99
2461 3358 5.759963 TCTCTGTCTTTGAGAAGTACGTTC 58.240 41.667 0.00 0.00 37.59 3.95
2463 3360 6.039493 TCTCTGTCTTTGAGAAGTACGTTCTT 59.961 38.462 7.19 7.19 46.21 2.52
2464 3361 6.570692 TCTGTCTTTGAGAAGTACGTTCTTT 58.429 36.000 8.93 0.00 46.21 2.52
2465 3362 6.475727 TCTGTCTTTGAGAAGTACGTTCTTTG 59.524 38.462 8.93 0.00 46.21 2.77
2466 3363 6.103997 TGTCTTTGAGAAGTACGTTCTTTGT 58.896 36.000 8.93 0.00 46.21 2.83
2467 3364 7.259882 TGTCTTTGAGAAGTACGTTCTTTGTA 58.740 34.615 8.93 0.00 46.21 2.41
2468 3365 7.924412 TGTCTTTGAGAAGTACGTTCTTTGTAT 59.076 33.333 8.93 0.00 46.21 2.29
2469 3366 8.426251 GTCTTTGAGAAGTACGTTCTTTGTATC 58.574 37.037 8.93 6.25 46.21 2.24
2470 3367 8.358148 TCTTTGAGAAGTACGTTCTTTGTATCT 58.642 33.333 8.93 1.12 46.21 1.98
2471 3368 8.882415 TTTGAGAAGTACGTTCTTTGTATCTT 57.118 30.769 8.93 0.00 46.21 2.40
2472 3369 7.869016 TGAGAAGTACGTTCTTTGTATCTTG 57.131 36.000 8.93 0.00 46.21 3.02
2473 3370 6.866770 TGAGAAGTACGTTCTTTGTATCTTGG 59.133 38.462 8.93 0.00 46.21 3.61
2474 3371 6.164176 AGAAGTACGTTCTTTGTATCTTGGG 58.836 40.000 8.93 0.00 43.54 4.12
2475 3372 4.828829 AGTACGTTCTTTGTATCTTGGGG 58.171 43.478 0.00 0.00 0.00 4.96
2476 3373 3.067684 ACGTTCTTTGTATCTTGGGGG 57.932 47.619 0.00 0.00 0.00 5.40
2477 3374 2.374170 ACGTTCTTTGTATCTTGGGGGT 59.626 45.455 0.00 0.00 0.00 4.95
2478 3375 2.747446 CGTTCTTTGTATCTTGGGGGTG 59.253 50.000 0.00 0.00 0.00 4.61
2479 3376 3.089284 GTTCTTTGTATCTTGGGGGTGG 58.911 50.000 0.00 0.00 0.00 4.61
2480 3377 2.638325 TCTTTGTATCTTGGGGGTGGA 58.362 47.619 0.00 0.00 0.00 4.02
2481 3378 2.990284 TCTTTGTATCTTGGGGGTGGAA 59.010 45.455 0.00 0.00 0.00 3.53
2482 3379 3.010138 TCTTTGTATCTTGGGGGTGGAAG 59.990 47.826 0.00 0.00 0.00 3.46
2483 3380 2.053747 TGTATCTTGGGGGTGGAAGT 57.946 50.000 0.00 0.00 0.00 3.01
2484 3381 3.208570 TGTATCTTGGGGGTGGAAGTA 57.791 47.619 0.00 0.00 0.00 2.24
2485 3382 3.743132 TGTATCTTGGGGGTGGAAGTAT 58.257 45.455 0.00 0.00 0.00 2.12
2486 3383 3.458118 TGTATCTTGGGGGTGGAAGTATG 59.542 47.826 0.00 0.00 0.00 2.39
2487 3384 2.053747 TCTTGGGGGTGGAAGTATGT 57.946 50.000 0.00 0.00 0.00 2.29
2488 3385 1.913419 TCTTGGGGGTGGAAGTATGTC 59.087 52.381 0.00 0.00 0.00 3.06
2489 3386 1.633432 CTTGGGGGTGGAAGTATGTCA 59.367 52.381 0.00 0.00 0.00 3.58
2490 3387 0.988832 TGGGGGTGGAAGTATGTCAC 59.011 55.000 0.00 0.00 0.00 3.67
2491 3388 1.286248 GGGGGTGGAAGTATGTCACT 58.714 55.000 0.00 0.00 40.05 3.41
2492 3389 1.209747 GGGGGTGGAAGTATGTCACTC 59.790 57.143 0.00 0.00 36.04 3.51
2493 3390 1.209747 GGGGTGGAAGTATGTCACTCC 59.790 57.143 0.00 0.00 43.70 3.85
2494 3391 1.906574 GGGTGGAAGTATGTCACTCCA 59.093 52.381 0.00 0.00 36.04 3.86
2495 3392 2.354805 GGGTGGAAGTATGTCACTCCAC 60.355 54.545 10.91 10.91 45.34 4.02
2496 3393 2.973945 GTGGAAGTATGTCACTCCACC 58.026 52.381 8.59 0.00 43.03 4.61
2497 3394 2.567615 GTGGAAGTATGTCACTCCACCT 59.432 50.000 8.59 0.00 43.03 4.00
2498 3395 3.767673 GTGGAAGTATGTCACTCCACCTA 59.232 47.826 8.59 0.00 43.03 3.08
2499 3396 4.023980 TGGAAGTATGTCACTCCACCTAG 58.976 47.826 0.00 0.00 36.04 3.02
2500 3397 3.385111 GGAAGTATGTCACTCCACCTAGG 59.615 52.174 7.41 7.41 36.04 3.02
2501 3398 4.279145 GAAGTATGTCACTCCACCTAGGA 58.721 47.826 17.98 0.00 46.75 2.94
2517 3414 9.189156 TCCACCTAGGAAATTCATTTTATTCTG 57.811 33.333 17.98 0.00 45.65 3.02
2518 3415 8.971073 CCACCTAGGAAATTCATTTTATTCTGT 58.029 33.333 17.98 0.00 41.22 3.41
2521 3418 9.807649 CCTAGGAAATTCATTTTATTCTGTTGG 57.192 33.333 1.05 0.00 0.00 3.77
2522 3419 9.807649 CTAGGAAATTCATTTTATTCTGTTGGG 57.192 33.333 0.00 0.00 0.00 4.12
2523 3420 7.623630 AGGAAATTCATTTTATTCTGTTGGGG 58.376 34.615 0.00 0.00 0.00 4.96
2524 3421 7.237471 AGGAAATTCATTTTATTCTGTTGGGGT 59.763 33.333 0.00 0.00 0.00 4.95
2525 3422 7.882791 GGAAATTCATTTTATTCTGTTGGGGTT 59.117 33.333 0.00 0.00 0.00 4.11
2526 3423 9.283768 GAAATTCATTTTATTCTGTTGGGGTTT 57.716 29.630 0.00 0.00 0.00 3.27
2527 3424 9.639563 AAATTCATTTTATTCTGTTGGGGTTTT 57.360 25.926 0.00 0.00 0.00 2.43
2528 3425 8.846943 ATTCATTTTATTCTGTTGGGGTTTTC 57.153 30.769 0.00 0.00 0.00 2.29
2529 3426 7.610580 TCATTTTATTCTGTTGGGGTTTTCT 57.389 32.000 0.00 0.00 0.00 2.52
2530 3427 8.028652 TCATTTTATTCTGTTGGGGTTTTCTT 57.971 30.769 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 0.918983 ATGCAGCCTTTAGTGCCCTA 59.081 50.000 0.00 0.00 39.04 3.53
26 27 3.323136 CGCGACTACTGCCGATGC 61.323 66.667 0.00 0.00 38.26 3.91
57 58 1.336887 GCTCTGCTTCCTGTTGTACGA 60.337 52.381 0.00 0.00 0.00 3.43
60 61 0.037326 CCGCTCTGCTTCCTGTTGTA 60.037 55.000 0.00 0.00 0.00 2.41
92 93 1.252215 TATCCGACGGTTGTCTGCCA 61.252 55.000 14.79 0.00 43.21 4.92
105 106 0.035820 GCCACCACAACCTTATCCGA 60.036 55.000 0.00 0.00 0.00 4.55
159 160 2.030457 CCTTCATCGTTTATGCCGTCAC 59.970 50.000 0.00 0.00 35.38 3.67
160 161 2.276201 CCTTCATCGTTTATGCCGTCA 58.724 47.619 0.00 0.00 35.38 4.35
186 187 1.429463 GTGACCGTCATGTCTTGTCC 58.571 55.000 4.13 0.00 36.21 4.02
188 189 0.944311 GCGTGACCGTCATGTCTTGT 60.944 55.000 19.58 0.00 35.86 3.16
196 197 3.299304 CTCGTACGCGTGACCGTCA 62.299 63.158 24.59 0.00 42.20 4.35
198 199 4.093952 CCTCGTACGCGTGACCGT 62.094 66.667 24.59 0.00 44.62 4.83
219 220 1.970640 ACTAAACCCTAAACCGGACGT 59.029 47.619 9.46 0.00 0.00 4.34
319 334 6.971527 ACGGACGAAATTCATGTAAACATA 57.028 33.333 0.00 0.00 34.26 2.29
326 341 5.467399 TGAACTAAACGGACGAAATTCATGT 59.533 36.000 0.00 0.00 0.00 3.21
353 368 4.998033 TGTTCGCATACATTTGAACCACTA 59.002 37.500 1.95 0.00 39.89 2.74
361 376 3.360463 CCAACGTTGTTCGCATACATTTG 59.640 43.478 25.63 2.52 44.19 2.32
414 432 1.517242 GTGGCAGACAAGAGAACCAG 58.483 55.000 0.00 0.00 0.00 4.00
423 441 2.579657 ATCCGTCCGTGGCAGACAA 61.580 57.895 7.54 0.00 33.70 3.18
428 446 3.071837 TAGCATCCGTCCGTGGCA 61.072 61.111 0.00 0.00 0.00 4.92
432 450 1.471119 TTTCTCTAGCATCCGTCCGT 58.529 50.000 0.00 0.00 0.00 4.69
445 463 3.140325 TCTGACCCGCAAATTTTCTCT 57.860 42.857 0.00 0.00 0.00 3.10
449 467 1.000717 CGGTTCTGACCCGCAAATTTT 60.001 47.619 0.00 0.00 43.42 1.82
596 617 2.433868 TCAGTACAAACTCAGTCGCC 57.566 50.000 0.00 0.00 31.97 5.54
699 780 9.076781 TCACATCCTTATGTTTTCAAATCAGAA 57.923 29.630 0.00 0.00 44.07 3.02
939 1126 9.002600 CATATTGCAGCCTACTTATGTCAATTA 57.997 33.333 0.00 0.00 0.00 1.40
982 1169 2.958818 TGTGGTAGTGTTCACCTCTCT 58.041 47.619 0.00 0.00 36.96 3.10
1050 1552 8.928270 TTCTTAGTTTTATTTTTCCGCAACAA 57.072 26.923 0.00 0.00 0.00 2.83
1096 1601 4.393062 CGCCTGCTTTCTTCTTGAAGATAA 59.607 41.667 13.04 9.62 35.89 1.75
1124 1629 3.896888 TGACCATGAGAGTTGCCAAAAAT 59.103 39.130 0.00 0.00 0.00 1.82
1344 2125 2.093306 TCTGTTTGTATCTGCACCGG 57.907 50.000 0.00 0.00 0.00 5.28
1380 2162 2.826128 AGTCCAACTCATAGCACTTCGA 59.174 45.455 0.00 0.00 0.00 3.71
1440 2222 0.877743 GAACTGCACTTTCCTCCAGC 59.122 55.000 0.00 0.00 0.00 4.85
1441 2223 1.528129 GGAACTGCACTTTCCTCCAG 58.472 55.000 13.18 0.00 39.68 3.86
1456 2238 2.609459 CAGCAACATCCATCGTAGGAAC 59.391 50.000 2.88 0.00 41.92 3.62
1469 2251 2.662070 GGCAATGGGGCAGCAACAT 61.662 57.895 0.00 0.00 42.77 2.71
1580 2364 9.787435 CGAGTAGGCTAGATATAGGATTAGAAT 57.213 37.037 0.00 0.00 0.00 2.40
1607 2391 6.648879 AGAACAGGCTTTGCTTTAATTGTA 57.351 33.333 0.00 0.00 0.00 2.41
1608 2392 5.535753 AGAACAGGCTTTGCTTTAATTGT 57.464 34.783 0.00 0.00 0.00 2.71
1610 2394 6.820335 AGAAAGAACAGGCTTTGCTTTAATT 58.180 32.000 6.61 0.00 38.16 1.40
1611 2395 6.410942 AGAAAGAACAGGCTTTGCTTTAAT 57.589 33.333 6.61 0.00 38.16 1.40
1613 2397 5.505654 CGAAGAAAGAACAGGCTTTGCTTTA 60.506 40.000 6.61 0.00 38.16 1.85
1614 2398 4.686972 GAAGAAAGAACAGGCTTTGCTTT 58.313 39.130 6.33 6.33 38.16 3.51
1615 2399 3.243201 CGAAGAAAGAACAGGCTTTGCTT 60.243 43.478 0.00 0.00 38.16 3.91
1617 2401 2.605580 CCGAAGAAAGAACAGGCTTTGC 60.606 50.000 0.00 0.00 38.16 3.68
1618 2402 2.618709 ACCGAAGAAAGAACAGGCTTTG 59.381 45.455 0.00 0.00 38.16 2.77
1619 2403 2.932261 ACCGAAGAAAGAACAGGCTTT 58.068 42.857 0.00 0.00 40.59 3.51
1624 2515 3.678072 TCGCAATACCGAAGAAAGAACAG 59.322 43.478 0.00 0.00 33.77 3.16
1724 2615 7.100409 AGAAGAGAGAAAAAGATAAGGTTCGG 58.900 38.462 0.00 0.00 0.00 4.30
1749 2643 2.028476 CCGAGTCACTAACATGTGGGAA 60.028 50.000 0.00 0.00 38.40 3.97
1760 2654 5.250982 TGAGTTTATCAGACCGAGTCACTA 58.749 41.667 6.78 0.00 34.60 2.74
1775 2669 0.462759 GCGCTGCTCCCTGAGTTTAT 60.463 55.000 0.00 0.00 31.39 1.40
1803 2699 0.893727 GGAAAGAAGGCGGGCAAGAA 60.894 55.000 3.78 0.00 0.00 2.52
1806 2702 2.282887 GGGAAAGAAGGCGGGCAA 60.283 61.111 3.78 0.00 0.00 4.52
1853 2749 0.741221 GCGTGGAGGATCTGTTGACC 60.741 60.000 0.00 0.00 33.73 4.02
1880 2776 2.513897 CCGACGGAGGATTTGGGC 60.514 66.667 8.64 0.00 0.00 5.36
1911 2807 1.536676 CGGCATAGGGGATTTGGGT 59.463 57.895 0.00 0.00 0.00 4.51
1941 2837 2.360350 CAGCAACCATGGAGGCGT 60.360 61.111 21.47 8.39 43.14 5.68
1995 2891 2.262774 GATGGTGTCAGGAGGCCCAG 62.263 65.000 0.00 0.00 33.88 4.45
2015 2911 1.748879 GGCAGCAACGGCATCCTAA 60.749 57.895 0.00 0.00 44.61 2.69
2016 2912 2.124736 GGCAGCAACGGCATCCTA 60.125 61.111 0.00 0.00 44.61 2.94
2017 2913 4.349503 TGGCAGCAACGGCATCCT 62.350 61.111 0.00 0.00 44.61 3.24
2023 2919 3.443045 GGTCCATGGCAGCAACGG 61.443 66.667 6.96 0.00 0.00 4.44
2047 2943 2.320587 CGTGAGTCCAAGCTGGCAC 61.321 63.158 0.00 0.00 37.47 5.01
2053 2949 1.671379 GGGTTCCGTGAGTCCAAGC 60.671 63.158 0.00 0.00 0.00 4.01
2056 2952 1.052124 ACAAGGGTTCCGTGAGTCCA 61.052 55.000 6.86 0.00 36.54 4.02
2059 2955 3.197116 CCTTATACAAGGGTTCCGTGAGT 59.803 47.826 6.86 1.02 46.71 3.41
2071 2967 5.597806 TCATTACGGACAGCCTTATACAAG 58.402 41.667 0.00 0.00 0.00 3.16
2082 2979 5.713792 ATGATACTCCTCATTACGGACAG 57.286 43.478 0.00 0.00 31.82 3.51
2085 2982 5.888901 ACCTATGATACTCCTCATTACGGA 58.111 41.667 0.00 0.00 37.13 4.69
2094 2991 5.478679 GCATGACACTACCTATGATACTCCT 59.521 44.000 0.00 0.00 0.00 3.69
2260 3157 8.485591 GTGCAATTTCGGTAGTAGTAACATATC 58.514 37.037 0.00 0.00 0.00 1.63
2263 3160 6.403878 AGTGCAATTTCGGTAGTAGTAACAT 58.596 36.000 0.00 0.00 0.00 2.71
2266 3163 5.870978 GGAAGTGCAATTTCGGTAGTAGTAA 59.129 40.000 0.00 0.00 32.71 2.24
2276 3173 4.701956 AACCATAGGAAGTGCAATTTCG 57.298 40.909 0.00 0.00 32.71 3.46
2346 3243 2.158971 TGACAAGCATAGCGGCAGAATA 60.159 45.455 1.45 0.00 35.83 1.75
2347 3244 1.303309 GACAAGCATAGCGGCAGAAT 58.697 50.000 1.45 0.00 35.83 2.40
2348 3245 0.036483 TGACAAGCATAGCGGCAGAA 60.036 50.000 1.45 0.00 35.83 3.02
2349 3246 0.036483 TTGACAAGCATAGCGGCAGA 60.036 50.000 1.45 0.00 35.83 4.26
2350 3247 1.019673 ATTGACAAGCATAGCGGCAG 58.980 50.000 1.45 0.00 35.83 4.85
2351 3248 1.401552 GAATTGACAAGCATAGCGGCA 59.598 47.619 1.45 0.00 35.83 5.69
2352 3249 1.672881 AGAATTGACAAGCATAGCGGC 59.327 47.619 0.00 0.00 0.00 6.53
2353 3250 2.938451 TGAGAATTGACAAGCATAGCGG 59.062 45.455 0.00 0.00 0.00 5.52
2354 3251 4.604843 TTGAGAATTGACAAGCATAGCG 57.395 40.909 0.00 0.00 0.00 4.26
2355 3252 6.127810 TCATTGAGAATTGACAAGCATAGC 57.872 37.500 0.00 0.00 0.00 2.97
2356 3253 9.827411 CATATCATTGAGAATTGACAAGCATAG 57.173 33.333 0.00 0.00 0.00 2.23
2357 3254 9.563748 TCATATCATTGAGAATTGACAAGCATA 57.436 29.630 0.00 0.00 0.00 3.14
2358 3255 8.459911 TCATATCATTGAGAATTGACAAGCAT 57.540 30.769 0.00 0.00 0.00 3.79
2359 3256 7.868906 TCATATCATTGAGAATTGACAAGCA 57.131 32.000 0.00 0.00 0.00 3.91
2360 3257 8.021973 GGATCATATCATTGAGAATTGACAAGC 58.978 37.037 0.00 0.00 0.00 4.01
2361 3258 9.063615 TGGATCATATCATTGAGAATTGACAAG 57.936 33.333 0.00 0.00 0.00 3.16
2362 3259 8.983702 TGGATCATATCATTGAGAATTGACAA 57.016 30.769 0.00 0.00 0.00 3.18
2368 3265 9.668497 CTGTGTATGGATCATATCATTGAGAAT 57.332 33.333 0.00 0.00 0.00 2.40
2369 3266 8.873144 TCTGTGTATGGATCATATCATTGAGAA 58.127 33.333 0.00 0.00 0.00 2.87
2370 3267 8.426569 TCTGTGTATGGATCATATCATTGAGA 57.573 34.615 0.00 0.00 0.00 3.27
2371 3268 9.498176 TTTCTGTGTATGGATCATATCATTGAG 57.502 33.333 0.00 0.00 0.00 3.02
2376 3273 9.498176 CAGAATTTCTGTGTATGGATCATATCA 57.502 33.333 16.71 0.00 39.58 2.15
2377 3274 9.716531 TCAGAATTTCTGTGTATGGATCATATC 57.283 33.333 22.44 0.00 44.58 1.63
2380 3277 8.847196 CATTCAGAATTTCTGTGTATGGATCAT 58.153 33.333 22.44 2.58 44.58 2.45
2381 3278 8.048514 TCATTCAGAATTTCTGTGTATGGATCA 58.951 33.333 22.44 8.94 44.58 2.92
2382 3279 8.341173 GTCATTCAGAATTTCTGTGTATGGATC 58.659 37.037 22.44 14.39 44.58 3.36
2383 3280 7.830697 TGTCATTCAGAATTTCTGTGTATGGAT 59.169 33.333 22.44 7.17 44.58 3.41
2384 3281 7.167535 TGTCATTCAGAATTTCTGTGTATGGA 58.832 34.615 22.44 11.86 44.58 3.41
2385 3282 7.381766 TGTCATTCAGAATTTCTGTGTATGG 57.618 36.000 22.44 10.18 44.58 2.74
2386 3283 7.431376 GCATGTCATTCAGAATTTCTGTGTATG 59.569 37.037 22.44 21.20 44.58 2.39
2387 3284 7.415989 GGCATGTCATTCAGAATTTCTGTGTAT 60.416 37.037 22.44 13.33 44.58 2.29
2388 3285 6.127925 GGCATGTCATTCAGAATTTCTGTGTA 60.128 38.462 22.44 11.93 44.58 2.90
2389 3286 5.336213 GGCATGTCATTCAGAATTTCTGTGT 60.336 40.000 22.44 11.85 44.58 3.72
2390 3287 5.100259 GGCATGTCATTCAGAATTTCTGTG 58.900 41.667 22.44 15.74 44.58 3.66
2391 3288 4.768448 TGGCATGTCATTCAGAATTTCTGT 59.232 37.500 22.44 5.18 44.58 3.41
2392 3289 5.319140 TGGCATGTCATTCAGAATTTCTG 57.681 39.130 18.49 18.49 45.59 3.02
2393 3290 7.649533 TTATGGCATGTCATTCAGAATTTCT 57.350 32.000 19.60 0.00 0.00 2.52
2394 3291 8.358148 AGATTATGGCATGTCATTCAGAATTTC 58.642 33.333 19.60 2.41 0.00 2.17
2395 3292 8.141909 CAGATTATGGCATGTCATTCAGAATTT 58.858 33.333 19.60 4.51 0.00 1.82
2396 3293 7.287005 ACAGATTATGGCATGTCATTCAGAATT 59.713 33.333 19.60 0.00 0.00 2.17
2397 3294 6.776116 ACAGATTATGGCATGTCATTCAGAAT 59.224 34.615 19.60 11.79 0.00 2.40
2398 3295 6.038936 CACAGATTATGGCATGTCATTCAGAA 59.961 38.462 19.60 6.91 0.00 3.02
2399 3296 5.529800 CACAGATTATGGCATGTCATTCAGA 59.470 40.000 19.60 0.00 0.00 3.27
2400 3297 5.298527 ACACAGATTATGGCATGTCATTCAG 59.701 40.000 19.60 10.24 0.00 3.02
2401 3298 5.195185 ACACAGATTATGGCATGTCATTCA 58.805 37.500 19.60 6.21 0.00 2.57
2402 3299 5.762825 ACACAGATTATGGCATGTCATTC 57.237 39.130 19.60 11.01 0.00 2.67
2403 3300 6.334989 CAAACACAGATTATGGCATGTCATT 58.665 36.000 19.60 0.08 0.00 2.57
2404 3301 5.163488 CCAAACACAGATTATGGCATGTCAT 60.163 40.000 18.34 18.34 0.00 3.06
2405 3302 4.158209 CCAAACACAGATTATGGCATGTCA 59.842 41.667 10.98 0.60 0.00 3.58
2406 3303 4.440525 CCCAAACACAGATTATGGCATGTC 60.441 45.833 10.98 8.36 0.00 3.06
2407 3304 3.448301 CCCAAACACAGATTATGGCATGT 59.552 43.478 10.98 0.00 0.00 3.21
2408 3305 3.700539 TCCCAAACACAGATTATGGCATG 59.299 43.478 10.98 0.00 0.00 4.06
2409 3306 3.956199 CTCCCAAACACAGATTATGGCAT 59.044 43.478 4.88 4.88 0.00 4.40
2410 3307 3.355378 CTCCCAAACACAGATTATGGCA 58.645 45.455 0.00 0.00 0.00 4.92
2411 3308 2.689983 CCTCCCAAACACAGATTATGGC 59.310 50.000 0.00 0.00 0.00 4.40
2412 3309 3.968265 ACCTCCCAAACACAGATTATGG 58.032 45.455 0.00 0.00 0.00 2.74
2413 3310 5.009631 TGAACCTCCCAAACACAGATTATG 58.990 41.667 0.00 0.00 0.00 1.90
2414 3311 5.010282 GTGAACCTCCCAAACACAGATTAT 58.990 41.667 0.00 0.00 0.00 1.28
2415 3312 4.104102 AGTGAACCTCCCAAACACAGATTA 59.896 41.667 0.00 0.00 34.47 1.75
2416 3313 3.117512 AGTGAACCTCCCAAACACAGATT 60.118 43.478 0.00 0.00 34.47 2.40
2417 3314 2.443255 AGTGAACCTCCCAAACACAGAT 59.557 45.455 0.00 0.00 34.47 2.90
2418 3315 1.843851 AGTGAACCTCCCAAACACAGA 59.156 47.619 0.00 0.00 34.47 3.41
2419 3316 2.158755 AGAGTGAACCTCCCAAACACAG 60.159 50.000 0.00 0.00 41.47 3.66
2420 3317 1.843851 AGAGTGAACCTCCCAAACACA 59.156 47.619 0.00 0.00 41.47 3.72
2421 3318 2.104963 AGAGAGTGAACCTCCCAAACAC 59.895 50.000 0.00 0.00 41.47 3.32
2422 3319 2.104792 CAGAGAGTGAACCTCCCAAACA 59.895 50.000 0.00 0.00 41.47 2.83
2423 3320 2.104963 ACAGAGAGTGAACCTCCCAAAC 59.895 50.000 0.00 0.00 41.47 2.93
2424 3321 2.368875 GACAGAGAGTGAACCTCCCAAA 59.631 50.000 0.00 0.00 41.47 3.28
2425 3322 1.971357 GACAGAGAGTGAACCTCCCAA 59.029 52.381 0.00 0.00 41.47 4.12
2426 3323 1.148027 AGACAGAGAGTGAACCTCCCA 59.852 52.381 0.00 0.00 41.47 4.37
2427 3324 1.931635 AGACAGAGAGTGAACCTCCC 58.068 55.000 0.00 0.00 41.47 4.30
2428 3325 3.322254 TCAAAGACAGAGAGTGAACCTCC 59.678 47.826 0.00 0.00 41.47 4.30
2429 3326 4.279671 TCTCAAAGACAGAGAGTGAACCTC 59.720 45.833 0.00 0.00 37.22 3.85
2430 3327 4.219115 TCTCAAAGACAGAGAGTGAACCT 58.781 43.478 0.00 0.00 37.22 3.50
2431 3328 4.592485 TCTCAAAGACAGAGAGTGAACC 57.408 45.455 0.00 0.00 37.22 3.62
2432 3329 5.596845 ACTTCTCAAAGACAGAGAGTGAAC 58.403 41.667 0.00 0.00 42.57 3.18
2433 3330 5.860941 ACTTCTCAAAGACAGAGAGTGAA 57.139 39.130 0.00 0.00 42.57 3.18
2434 3331 5.049336 CGTACTTCTCAAAGACAGAGAGTGA 60.049 44.000 0.00 0.00 42.57 3.41
2435 3332 5.150683 CGTACTTCTCAAAGACAGAGAGTG 58.849 45.833 0.00 0.00 42.57 3.51
2436 3333 4.822896 ACGTACTTCTCAAAGACAGAGAGT 59.177 41.667 0.00 0.00 42.57 3.24
2437 3334 5.365403 ACGTACTTCTCAAAGACAGAGAG 57.635 43.478 0.00 0.00 42.57 3.20
2438 3335 5.531659 AGAACGTACTTCTCAAAGACAGAGA 59.468 40.000 0.00 0.00 40.20 3.10
2439 3336 5.764131 AGAACGTACTTCTCAAAGACAGAG 58.236 41.667 0.00 0.00 33.53 3.35
2440 3337 5.769484 AGAACGTACTTCTCAAAGACAGA 57.231 39.130 0.00 0.00 33.53 3.41
2441 3338 6.255887 ACAAAGAACGTACTTCTCAAAGACAG 59.744 38.462 7.68 0.00 38.37 3.51
2442 3339 6.103997 ACAAAGAACGTACTTCTCAAAGACA 58.896 36.000 7.68 0.00 38.37 3.41
2443 3340 6.585389 ACAAAGAACGTACTTCTCAAAGAC 57.415 37.500 7.68 0.00 38.37 3.01
2444 3341 8.358148 AGATACAAAGAACGTACTTCTCAAAGA 58.642 33.333 7.68 0.00 38.37 2.52
2445 3342 8.522178 AGATACAAAGAACGTACTTCTCAAAG 57.478 34.615 7.68 0.00 38.37 2.77
2446 3343 8.761497 CAAGATACAAAGAACGTACTTCTCAAA 58.239 33.333 7.68 0.00 38.37 2.69
2447 3344 7.384115 CCAAGATACAAAGAACGTACTTCTCAA 59.616 37.037 7.68 0.00 38.37 3.02
2448 3345 6.866770 CCAAGATACAAAGAACGTACTTCTCA 59.133 38.462 7.68 0.00 38.37 3.27
2449 3346 6.310711 CCCAAGATACAAAGAACGTACTTCTC 59.689 42.308 7.68 0.00 38.37 2.87
2450 3347 6.164176 CCCAAGATACAAAGAACGTACTTCT 58.836 40.000 0.00 0.00 41.39 2.85
2451 3348 5.350640 CCCCAAGATACAAAGAACGTACTTC 59.649 44.000 0.00 0.00 0.00 3.01
2452 3349 5.243207 CCCCAAGATACAAAGAACGTACTT 58.757 41.667 0.00 0.00 0.00 2.24
2453 3350 4.323257 CCCCCAAGATACAAAGAACGTACT 60.323 45.833 0.00 0.00 0.00 2.73
2454 3351 3.937079 CCCCCAAGATACAAAGAACGTAC 59.063 47.826 0.00 0.00 0.00 3.67
2455 3352 3.583966 ACCCCCAAGATACAAAGAACGTA 59.416 43.478 0.00 0.00 0.00 3.57
2456 3353 2.374170 ACCCCCAAGATACAAAGAACGT 59.626 45.455 0.00 0.00 0.00 3.99
2457 3354 2.747446 CACCCCCAAGATACAAAGAACG 59.253 50.000 0.00 0.00 0.00 3.95
2458 3355 3.089284 CCACCCCCAAGATACAAAGAAC 58.911 50.000 0.00 0.00 0.00 3.01
2459 3356 2.990284 TCCACCCCCAAGATACAAAGAA 59.010 45.455 0.00 0.00 0.00 2.52
2460 3357 2.638325 TCCACCCCCAAGATACAAAGA 58.362 47.619 0.00 0.00 0.00 2.52
2461 3358 3.245264 ACTTCCACCCCCAAGATACAAAG 60.245 47.826 0.00 0.00 0.00 2.77
2462 3359 2.719705 ACTTCCACCCCCAAGATACAAA 59.280 45.455 0.00 0.00 0.00 2.83
2463 3360 2.354328 ACTTCCACCCCCAAGATACAA 58.646 47.619 0.00 0.00 0.00 2.41
2464 3361 2.053747 ACTTCCACCCCCAAGATACA 57.946 50.000 0.00 0.00 0.00 2.29
2465 3362 3.458487 ACATACTTCCACCCCCAAGATAC 59.542 47.826 0.00 0.00 0.00 2.24
2466 3363 3.714798 GACATACTTCCACCCCCAAGATA 59.285 47.826 0.00 0.00 0.00 1.98
2467 3364 2.509964 GACATACTTCCACCCCCAAGAT 59.490 50.000 0.00 0.00 0.00 2.40
2468 3365 1.913419 GACATACTTCCACCCCCAAGA 59.087 52.381 0.00 0.00 0.00 3.02
2469 3366 1.633432 TGACATACTTCCACCCCCAAG 59.367 52.381 0.00 0.00 0.00 3.61
2470 3367 1.353022 GTGACATACTTCCACCCCCAA 59.647 52.381 0.00 0.00 0.00 4.12
2471 3368 0.988832 GTGACATACTTCCACCCCCA 59.011 55.000 0.00 0.00 0.00 4.96
2472 3369 1.209747 GAGTGACATACTTCCACCCCC 59.790 57.143 0.00 0.00 40.53 5.40
2473 3370 1.209747 GGAGTGACATACTTCCACCCC 59.790 57.143 0.00 0.00 40.53 4.95
2474 3371 1.906574 TGGAGTGACATACTTCCACCC 59.093 52.381 0.00 0.00 40.53 4.61
2475 3372 2.973945 GTGGAGTGACATACTTCCACC 58.026 52.381 9.16 0.00 43.85 4.61
2476 3373 2.567615 AGGTGGAGTGACATACTTCCAC 59.432 50.000 11.30 11.30 46.10 4.02
2477 3374 2.902608 AGGTGGAGTGACATACTTCCA 58.097 47.619 0.00 0.00 40.53 3.53
2478 3375 3.385111 CCTAGGTGGAGTGACATACTTCC 59.615 52.174 0.00 0.00 40.53 3.46
2479 3376 4.279145 TCCTAGGTGGAGTGACATACTTC 58.721 47.826 9.08 0.00 40.53 3.01
2480 3377 4.332683 TCCTAGGTGGAGTGACATACTT 57.667 45.455 9.08 0.00 40.53 2.24
2491 3388 9.189156 CAGAATAAAATGAATTTCCTAGGTGGA 57.811 33.333 9.08 0.00 44.51 4.02
2492 3389 8.971073 ACAGAATAAAATGAATTTCCTAGGTGG 58.029 33.333 9.08 0.00 32.27 4.61
2495 3392 9.807649 CCAACAGAATAAAATGAATTTCCTAGG 57.192 33.333 0.82 0.82 32.27 3.02
2496 3393 9.807649 CCCAACAGAATAAAATGAATTTCCTAG 57.192 33.333 0.00 0.00 32.27 3.02
2497 3394 8.757877 CCCCAACAGAATAAAATGAATTTCCTA 58.242 33.333 0.00 0.00 32.27 2.94
2498 3395 7.237471 ACCCCAACAGAATAAAATGAATTTCCT 59.763 33.333 0.00 0.00 32.27 3.36
2499 3396 7.394016 ACCCCAACAGAATAAAATGAATTTCC 58.606 34.615 0.00 0.00 32.27 3.13
2500 3397 8.846943 AACCCCAACAGAATAAAATGAATTTC 57.153 30.769 0.00 0.00 32.27 2.17
2501 3398 9.639563 AAAACCCCAACAGAATAAAATGAATTT 57.360 25.926 0.00 0.00 34.92 1.82
2502 3399 9.283768 GAAAACCCCAACAGAATAAAATGAATT 57.716 29.630 0.00 0.00 0.00 2.17
2503 3400 8.659527 AGAAAACCCCAACAGAATAAAATGAAT 58.340 29.630 0.00 0.00 0.00 2.57
2504 3401 8.028652 AGAAAACCCCAACAGAATAAAATGAA 57.971 30.769 0.00 0.00 0.00 2.57
2505 3402 7.610580 AGAAAACCCCAACAGAATAAAATGA 57.389 32.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.