Multiple sequence alignment - TraesCS7A01G316900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G316900 chr7A 100.000 5663 0 0 910 6572 454047076 454052738 0.000000e+00 10458.0
1 TraesCS7A01G316900 chr7A 100.000 1918 0 0 6973 8890 454053139 454055056 0.000000e+00 3542.0
2 TraesCS7A01G316900 chr7A 100.000 502 0 0 1 502 454046167 454046668 0.000000e+00 928.0
3 TraesCS7A01G316900 chr7A 97.638 127 3 0 2792 2918 439786515 439786389 1.500000e-52 219.0
4 TraesCS7A01G316900 chr7A 89.247 93 10 0 2899 2991 202000760 202000668 5.640000e-22 117.0
5 TraesCS7A01G316900 chr7B 95.685 2225 50 16 4355 6572 402811080 402813265 0.000000e+00 3535.0
6 TraesCS7A01G316900 chr7B 95.390 1909 56 12 910 2793 402807784 402809685 0.000000e+00 3009.0
7 TraesCS7A01G316900 chr7B 95.920 1348 38 8 6973 8307 402813308 402814651 0.000000e+00 2169.0
8 TraesCS7A01G316900 chr7B 94.708 548 27 1 8310 8857 402814692 402815237 0.000000e+00 850.0
9 TraesCS7A01G316900 chr7B 95.528 492 15 6 3534 4024 402810171 402810656 0.000000e+00 780.0
10 TraesCS7A01G316900 chr7B 95.445 461 19 2 2917 3376 402809684 402810143 0.000000e+00 734.0
11 TraesCS7A01G316900 chr7B 84.703 706 55 28 4059 4756 145377013 145376353 0.000000e+00 656.0
12 TraesCS7A01G316900 chr7B 90.381 499 12 7 6 502 402807261 402807725 2.730000e-174 623.0
13 TraesCS7A01G316900 chr7B 95.122 287 13 1 4027 4312 402810794 402811080 1.360000e-122 451.0
14 TraesCS7A01G316900 chr7B 90.127 314 20 6 3613 3920 145377308 145377000 1.800000e-106 398.0
15 TraesCS7A01G316900 chr7B 87.037 108 11 2 7021 7128 450629716 450629612 1.570000e-22 119.0
16 TraesCS7A01G316900 chr7B 89.041 73 7 1 3515 3586 149610331 149610259 1.230000e-13 89.8
17 TraesCS7A01G316900 chr7B 87.500 80 4 3 3513 3586 482485030 482484951 4.420000e-13 87.9
18 TraesCS7A01G316900 chr7D 97.591 1785 38 4 4791 6572 397993384 397995166 0.000000e+00 3053.0
19 TraesCS7A01G316900 chr7D 95.543 1907 53 14 910 2793 397989682 397991579 0.000000e+00 3022.0
20 TraesCS7A01G316900 chr7D 95.932 1352 38 7 6973 8311 397995207 397996554 0.000000e+00 2176.0
21 TraesCS7A01G316900 chr7D 95.571 700 17 6 4027 4723 397992704 397993392 0.000000e+00 1109.0
22 TraesCS7A01G316900 chr7D 96.610 531 11 3 2917 3442 397991578 397992106 0.000000e+00 874.0
23 TraesCS7A01G316900 chr7D 93.014 501 5 6 6 502 397989151 397989625 0.000000e+00 704.0
24 TraesCS7A01G316900 chr7D 92.276 479 17 5 3548 4024 397992106 397992566 0.000000e+00 662.0
25 TraesCS7A01G316900 chr7D 90.909 187 11 6 8570 8754 397996925 397997107 6.890000e-61 246.0
26 TraesCS7A01G316900 chr7D 90.968 155 11 2 2766 2918 53743095 53743248 1.170000e-48 206.0
27 TraesCS7A01G316900 chr7D 92.754 138 10 0 8310 8447 397996594 397996731 5.440000e-47 200.0
28 TraesCS7A01G316900 chr7D 91.667 120 4 3 8771 8889 397997092 397997206 2.570000e-35 161.0
29 TraesCS7A01G316900 chr7D 85.606 132 12 2 7003 7130 93783199 93783327 2.010000e-26 132.0
30 TraesCS7A01G316900 chr7D 87.342 79 7 2 3510 3585 154086438 154086360 4.420000e-13 87.9
31 TraesCS7A01G316900 chr5D 92.330 352 22 2 1851 2202 536870275 536869929 6.200000e-136 496.0
32 TraesCS7A01G316900 chr5D 98.473 131 2 0 2788 2918 558898410 558898540 1.930000e-56 231.0
33 TraesCS7A01G316900 chr5D 96.377 138 5 0 2791 2928 115924521 115924658 2.500000e-55 228.0
34 TraesCS7A01G316900 chr5D 88.288 111 9 3 7000 7106 412263454 412263344 7.240000e-26 130.0
35 TraesCS7A01G316900 chr5D 100.000 41 0 0 3547 3587 45654385 45654425 9.570000e-10 76.8
36 TraesCS7A01G316900 chr4A 90.704 355 28 2 1848 2202 633131003 633131352 1.350000e-127 468.0
37 TraesCS7A01G316900 chr4A 90.341 352 29 3 1851 2202 633203860 633204206 2.930000e-124 457.0
38 TraesCS7A01G316900 chr4A 89.296 355 25 8 1848 2202 633078664 633079005 4.930000e-117 433.0
39 TraesCS7A01G316900 chr4A 88.764 89 9 1 2917 3005 564157084 564156997 3.390000e-19 108.0
40 TraesCS7A01G316900 chr4B 88.014 292 29 4 2705 2991 126323868 126324158 3.070000e-89 340.0
41 TraesCS7A01G316900 chr4B 90.476 105 8 2 7020 7123 140891469 140891572 4.330000e-28 137.0
42 TraesCS7A01G316900 chr4B 83.582 134 15 5 7000 7129 105342449 105342319 1.570000e-22 119.0
43 TraesCS7A01G316900 chr4B 82.963 135 16 5 6999 7129 438338070 438337939 2.030000e-21 115.0
44 TraesCS7A01G316900 chr2B 89.764 254 21 5 2710 2960 154903815 154903564 4.000000e-83 320.0
45 TraesCS7A01G316900 chr2B 87.037 108 11 2 7021 7128 47546171 47546067 1.570000e-22 119.0
46 TraesCS7A01G316900 chr2B 84.337 83 7 5 3513 3590 361969600 361969681 9.570000e-10 76.8
47 TraesCS7A01G316900 chr2B 92.308 39 3 0 3475 3513 572159609 572159571 1.000000e-03 56.5
48 TraesCS7A01G316900 chr5B 88.104 269 29 3 2724 2991 469980213 469980479 5.180000e-82 316.0
49 TraesCS7A01G316900 chr5B 97.015 134 4 0 2785 2918 431062130 431061997 8.980000e-55 226.0
50 TraesCS7A01G316900 chr6B 82.759 290 35 9 2704 2990 343033056 343032779 2.480000e-60 244.0
51 TraesCS7A01G316900 chr3B 98.473 131 2 0 2790 2920 355437315 355437445 1.930000e-56 231.0
52 TraesCS7A01G316900 chr3B 94.737 95 3 2 2705 2797 698611519 698611425 7.190000e-31 147.0
53 TraesCS7A01G316900 chr3B 92.000 50 3 1 4740 4789 70272777 70272825 1.600000e-07 69.4
54 TraesCS7A01G316900 chr5A 97.744 133 3 0 2787 2919 492896666 492896798 6.940000e-56 230.0
55 TraesCS7A01G316900 chr5A 93.519 108 6 1 2705 2811 338924049 338923942 9.240000e-35 159.0
56 TraesCS7A01G316900 chr3D 91.613 155 10 2 2766 2918 141485999 141486152 2.510000e-50 211.0
57 TraesCS7A01G316900 chr3D 90.968 155 11 2 2766 2918 301330906 301330753 1.170000e-48 206.0
58 TraesCS7A01G316900 chr3D 91.892 111 6 1 7024 7134 5616220 5616113 1.550000e-32 152.0
59 TraesCS7A01G316900 chr3D 90.196 102 7 1 7021 7122 383544136 383544038 7.240000e-26 130.0
60 TraesCS7A01G316900 chr3D 86.486 111 11 4 7021 7129 383544054 383544162 1.570000e-22 119.0
61 TraesCS7A01G316900 chr3D 82.482 137 16 6 7003 7134 614198681 614198548 7.290000e-21 113.0
62 TraesCS7A01G316900 chr3D 82.812 128 18 3 7002 7128 279627653 279627777 2.620000e-20 111.0
63 TraesCS7A01G316900 chr3D 87.234 94 10 2 2899 2990 556163492 556163585 1.220000e-18 106.0
64 TraesCS7A01G316900 chr3D 84.810 79 6 2 3513 3585 473745987 473746065 3.440000e-09 75.0
65 TraesCS7A01G316900 chr3D 95.455 44 2 0 3547 3590 598887884 598887927 4.450000e-08 71.3
66 TraesCS7A01G316900 chr2D 91.558 154 10 2 2766 2917 210882417 210882569 9.040000e-50 209.0
67 TraesCS7A01G316900 chr2D 92.308 104 7 1 2705 2807 612725119 612725222 7.190000e-31 147.0
68 TraesCS7A01G316900 chr2D 83.099 71 8 3 3515 3582 247098405 247098474 2.680000e-05 62.1
69 TraesCS7A01G316900 chr6D 90.566 159 10 4 2776 2930 54003158 54003315 1.170000e-48 206.0
70 TraesCS7A01G316900 chr6D 85.496 131 12 5 7002 7128 7565200 7565327 7.240000e-26 130.0
71 TraesCS7A01G316900 chr6D 91.667 84 5 1 2914 2995 36811764 36811847 2.030000e-21 115.0
72 TraesCS7A01G316900 chr6D 85.217 115 12 4 7021 7133 257871118 257871007 7.290000e-21 113.0
73 TraesCS7A01G316900 chr6D 84.348 115 13 4 7021 7133 347392675 347392564 3.390000e-19 108.0
74 TraesCS7A01G316900 chr6D 85.185 108 13 2 7021 7128 413419950 413420054 3.390000e-19 108.0
75 TraesCS7A01G316900 chr6D 84.348 115 13 4 7021 7133 421855365 421855254 3.390000e-19 108.0
76 TraesCS7A01G316900 chr6D 83.761 117 14 4 7019 7133 228071999 228071886 1.220000e-18 106.0
77 TraesCS7A01G316900 chr6D 81.818 132 15 5 7002 7128 304562621 304562748 1.580000e-17 102.0
78 TraesCS7A01G316900 chr6D 83.478 115 14 4 7021 7133 438786625 438786514 1.580000e-17 102.0
79 TraesCS7A01G316900 chr6D 95.238 42 2 0 3548 3589 56277769 56277728 5.760000e-07 67.6
80 TraesCS7A01G316900 chr6D 85.507 69 5 3 3518 3586 203747285 203747222 5.760000e-07 67.6
81 TraesCS7A01G316900 chr6D 97.436 39 1 0 3548 3586 273926198 273926160 5.760000e-07 67.6
82 TraesCS7A01G316900 chr6D 97.297 37 1 0 3547 3583 45479535 45479571 7.450000e-06 63.9
83 TraesCS7A01G316900 chr6D 93.023 43 3 0 3544 3586 447883240 447883282 7.450000e-06 63.9
84 TraesCS7A01G316900 chr6D 94.737 38 2 0 3548 3585 412190206 412190243 9.640000e-05 60.2
85 TraesCS7A01G316900 chr6D 92.500 40 3 0 3547 3586 104767471 104767510 3.470000e-04 58.4
86 TraesCS7A01G316900 chr1B 83.969 131 14 5 7003 7129 369256001 369256128 1.570000e-22 119.0
87 TraesCS7A01G316900 chr1B 82.963 135 16 5 6999 7129 658067464 658067595 2.030000e-21 115.0
88 TraesCS7A01G316900 chr1B 87.013 77 7 2 3513 3586 407306678 407306602 5.720000e-12 84.2
89 TraesCS7A01G316900 chr1B 100.000 35 0 0 4837 4871 489202995 489203029 2.070000e-06 65.8
90 TraesCS7A01G316900 chr4D 85.345 116 13 3 7021 7136 472938509 472938398 5.640000e-22 117.0
91 TraesCS7A01G316900 chr4D 84.615 117 14 3 7021 7137 439780315 439780203 7.290000e-21 113.0
92 TraesCS7A01G316900 chr4D 82.143 140 12 10 7002 7134 208558556 208558689 3.390000e-19 108.0
93 TraesCS7A01G316900 chr4D 81.159 138 19 5 7001 7134 244612824 244612690 4.390000e-18 104.0
94 TraesCS7A01G316900 chrUn 85.345 116 10 5 7021 7134 130475607 130475497 7.290000e-21 113.0
95 TraesCS7A01G316900 chrUn 84.956 113 13 3 7021 7132 128516300 128516409 2.620000e-20 111.0
96 TraesCS7A01G316900 chrUn 85.185 108 13 2 7021 7128 254470473 254470577 3.390000e-19 108.0
97 TraesCS7A01G316900 chrUn 84.348 115 12 5 7021 7133 343587198 343587088 3.390000e-19 108.0
98 TraesCS7A01G316900 chrUn 85.047 107 13 2 7022 7128 80682446 80682549 1.220000e-18 106.0
99 TraesCS7A01G316900 chrUn 85.047 107 13 2 7022 7128 80757029 80757132 1.220000e-18 106.0
100 TraesCS7A01G316900 chrUn 85.047 107 13 2 7022 7128 317828493 317828596 1.220000e-18 106.0
101 TraesCS7A01G316900 chrUn 84.211 114 13 4 7022 7133 401543142 401543032 1.220000e-18 106.0
102 TraesCS7A01G316900 chrUn 83.478 115 14 4 7021 7133 19647261 19647150 1.580000e-17 102.0
103 TraesCS7A01G316900 chrUn 84.259 108 14 2 7021 7128 31616802 31616906 1.580000e-17 102.0
104 TraesCS7A01G316900 chrUn 97.561 41 1 0 3547 3587 108764463 108764503 4.450000e-08 71.3
105 TraesCS7A01G316900 chrUn 94.872 39 2 0 3549 3587 303233692 303233654 2.680000e-05 62.1
106 TraesCS7A01G316900 chr1D 82.482 137 17 5 7002 7134 228800258 228800391 7.290000e-21 113.0
107 TraesCS7A01G316900 chr1D 83.077 130 15 5 7003 7128 256545348 256545474 2.620000e-20 111.0
108 TraesCS7A01G316900 chr1D 88.158 76 5 2 3516 3587 59951921 59951846 4.420000e-13 87.9
109 TraesCS7A01G316900 chr1D 88.000 75 4 4 3513 3586 66562559 66562489 5.720000e-12 84.2
110 TraesCS7A01G316900 chr1D 81.513 119 7 4 3474 3586 253526055 253525946 5.720000e-12 84.2
111 TraesCS7A01G316900 chr1D 85.915 71 7 2 3519 3586 301641657 301641587 1.240000e-08 73.1
112 TraesCS7A01G316900 chr1D 87.500 56 5 2 3541 3596 416295906 416295959 7.450000e-06 63.9
113 TraesCS7A01G316900 chr2A 85.366 82 8 2 3513 3590 632593204 632593123 2.060000e-11 82.4
114 TraesCS7A01G316900 chr1A 85.000 80 6 3 3513 3586 415638053 415638132 9.570000e-10 76.8
115 TraesCS7A01G316900 chr1A 83.784 74 10 1 3513 3584 60355450 60355377 1.600000e-07 69.4
116 TraesCS7A01G316900 chr3A 100.000 28 0 0 4746 4773 711419471 711419444 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G316900 chr7A 454046167 454055056 8889 False 4976.000 10458 100.000000 1 8890 3 chr7A.!!$F1 8889
1 TraesCS7A01G316900 chr7B 402807261 402815237 7976 False 1518.875 3535 94.772375 6 8857 8 chr7B.!!$F1 8851
2 TraesCS7A01G316900 chr7B 145376353 145377308 955 True 527.000 656 87.415000 3613 4756 2 chr7B.!!$R4 1143
3 TraesCS7A01G316900 chr7D 397989151 397997206 8055 False 1220.700 3053 94.186700 6 8889 10 chr7D.!!$F3 8883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
172 174 1.609501 AGCCTCAGCCTCACCGTAA 60.610 57.895 0.00 0.0 41.25 3.18 F
1563 1572 2.035704 GACATCGATCATCAGGTCAGCT 59.964 50.000 0.00 0.0 0.00 4.24 F
1756 1775 0.102481 TCGGTCAGCTAGATTTCGGC 59.898 55.000 0.00 0.0 0.00 5.54 F
1771 1790 0.880278 TCGGCTTGTGTGACTTCTGC 60.880 55.000 0.00 0.0 0.00 4.26 F
2129 2148 0.888736 TTCGTGGCATGTCTGGTTGG 60.889 55.000 6.60 0.0 0.00 3.77 F
2812 2851 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.0 0.00 2.17 F
2916 2955 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.0 0.00 3.85 F
4326 4518 0.594796 CTGTGTTGCGTTTGCTTCCC 60.595 55.000 0.00 0.0 43.34 3.97 F
4932 5130 3.849574 TGGTCCTCTGATGTTTATTCCCA 59.150 43.478 0.00 0.0 0.00 4.37 F
6402 6622 1.053424 TCACGTAGGGTTTCAGCCTT 58.947 50.000 0.00 0.0 45.25 4.35 F
7512 7748 0.530744 GGATTTTGGGGCCTTTCGAC 59.469 55.000 0.84 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1775 1.230635 CCCGGCAGAAGTCACACAAG 61.231 60.000 0.00 0.0 0.00 3.16 R
2901 2940 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.0 0.00 4.12 R
2903 2942 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.0 0.00 4.46 R
3526 3571 2.029290 ACTCATTAAACCAGCGACGAGT 60.029 45.455 0.00 0.0 0.00 4.18 R
3527 3572 2.607187 ACTCATTAAACCAGCGACGAG 58.393 47.619 0.00 0.0 0.00 4.18 R
3849 3901 2.878406 TGCAGCCAAAAGTTCACTAGTC 59.122 45.455 0.00 0.0 0.00 2.59 R
4862 5060 3.618690 AGAACTCTTGCCAGTGGATAC 57.381 47.619 15.20 0.0 0.00 2.24 R
5797 5995 2.106511 AGGCTAGCAAACCTTCTTGTCA 59.893 45.455 18.24 0.0 29.74 3.58 R
6409 6629 0.320073 TTCTGGCGTTAGTGGTTCGG 60.320 55.000 0.00 0.0 0.00 4.30 R
7798 8036 1.453155 AGGCAGCACGTTATTTCCAG 58.547 50.000 0.00 0.0 0.00 3.86 R
8541 8994 0.107703 TGCCTCTCCCAATTACAGCG 60.108 55.000 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
172 174 1.609501 AGCCTCAGCCTCACCGTAA 60.610 57.895 0.00 0.00 41.25 3.18
185 187 4.079090 CGTAACGGAGCAGCTCTG 57.921 61.111 27.17 27.17 42.15 3.35
310 316 3.759618 GGAGAGAGAAACGAGGAAAGAGA 59.240 47.826 0.00 0.00 0.00 3.10
311 317 4.142469 GGAGAGAGAAACGAGGAAAGAGAG 60.142 50.000 0.00 0.00 0.00 3.20
312 318 4.658063 AGAGAGAAACGAGGAAAGAGAGA 58.342 43.478 0.00 0.00 0.00 3.10
313 319 5.074115 AGAGAGAAACGAGGAAAGAGAGAA 58.926 41.667 0.00 0.00 0.00 2.87
314 320 5.183140 AGAGAGAAACGAGGAAAGAGAGAAG 59.817 44.000 0.00 0.00 0.00 2.85
315 321 3.920446 AGAAACGAGGAAAGAGAGAAGC 58.080 45.455 0.00 0.00 0.00 3.86
344 350 4.825679 CACCTCCCTCCCCCTCCC 62.826 77.778 0.00 0.00 0.00 4.30
1388 1397 2.072298 CGGCCTCTCTGTTTCTTTCTG 58.928 52.381 0.00 0.00 0.00 3.02
1563 1572 2.035704 GACATCGATCATCAGGTCAGCT 59.964 50.000 0.00 0.00 0.00 4.24
1588 1597 4.738998 CCATGCCCGCACCTTCCA 62.739 66.667 0.00 0.00 0.00 3.53
1591 1600 3.925630 ATGCCCGCACCTTCCACTG 62.926 63.158 0.00 0.00 0.00 3.66
1670 1689 2.357760 TTACCTCCGCAACCGCAC 60.358 61.111 0.00 0.00 38.40 5.34
1689 1708 3.119495 GCACAGAGTTTGTTCACCTGTTT 60.119 43.478 0.00 0.00 38.16 2.83
1699 1718 5.269505 TGTTCACCTGTTTATTGGTTTGG 57.730 39.130 0.00 0.00 33.75 3.28
1740 1759 4.991056 CCTATTACTGGTTGTCATGATCGG 59.009 45.833 0.00 0.00 0.00 4.18
1756 1775 0.102481 TCGGTCAGCTAGATTTCGGC 59.898 55.000 0.00 0.00 0.00 5.54
1771 1790 0.880278 TCGGCTTGTGTGACTTCTGC 60.880 55.000 0.00 0.00 0.00 4.26
1928 1947 1.271001 TGGATGCCACTTCTCACTGTG 60.271 52.381 0.17 0.17 0.00 3.66
1964 1983 8.726988 GCAGTTCTTGGTCATTACTTTTGTATA 58.273 33.333 0.00 0.00 34.49 1.47
2085 2104 5.874810 TGGTTATTCTCCTGATTTCTTCACG 59.125 40.000 0.00 0.00 0.00 4.35
2129 2148 0.888736 TTCGTGGCATGTCTGGTTGG 60.889 55.000 6.60 0.00 0.00 3.77
2330 2350 1.816224 GTGTGTTCGTTATGGGCCATT 59.184 47.619 26.58 9.05 0.00 3.16
2389 2412 7.607991 AGGTGTGTATTCATTTCTGTTTAGGAG 59.392 37.037 0.00 0.00 0.00 3.69
2391 2414 6.884295 TGTGTATTCATTTCTGTTTAGGAGGG 59.116 38.462 0.00 0.00 0.00 4.30
2549 2584 6.039717 GCCTATTCCTGTATTCATGCAAGAAA 59.960 38.462 8.64 0.00 29.09 2.52
2713 2751 8.511604 ACTTTGATGTATTTGATACTCCCTTG 57.488 34.615 0.43 0.00 36.70 3.61
2797 2836 8.697292 AGTGAATCTACACTCTAAAATACTCCC 58.303 37.037 0.00 0.00 46.36 4.30
2798 2837 8.697292 GTGAATCTACACTCTAAAATACTCCCT 58.303 37.037 0.00 0.00 37.73 4.20
2799 2838 8.915036 TGAATCTACACTCTAAAATACTCCCTC 58.085 37.037 0.00 0.00 0.00 4.30
2800 2839 7.842887 ATCTACACTCTAAAATACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
2801 2840 5.826737 TCTACACTCTAAAATACTCCCTCCG 59.173 44.000 0.00 0.00 0.00 4.63
2802 2841 4.351127 ACACTCTAAAATACTCCCTCCGT 58.649 43.478 0.00 0.00 0.00 4.69
2803 2842 4.401837 ACACTCTAAAATACTCCCTCCGTC 59.598 45.833 0.00 0.00 0.00 4.79
2804 2843 3.959449 ACTCTAAAATACTCCCTCCGTCC 59.041 47.826 0.00 0.00 0.00 4.79
2805 2844 3.303049 TCTAAAATACTCCCTCCGTCCC 58.697 50.000 0.00 0.00 0.00 4.46
2806 2845 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
2807 2846 1.961133 AAATACTCCCTCCGTCCCAA 58.039 50.000 0.00 0.00 0.00 4.12
2808 2847 1.961133 AATACTCCCTCCGTCCCAAA 58.039 50.000 0.00 0.00 0.00 3.28
2809 2848 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2810 2849 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2811 2850 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2812 2851 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2813 2852 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2814 2853 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2815 2854 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2816 2855 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2817 2856 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2818 2857 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2819 2858 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2820 2859 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2821 2860 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2822 2861 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2823 2862 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2824 2863 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2825 2864 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2826 2865 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2827 2866 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2828 2867 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2829 2868 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2837 2876 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
2838 2877 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2839 2878 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2840 2879 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2841 2880 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2842 2881 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
2873 2912 9.745880 ACACTAAAATGTAACTAGATACATCCG 57.254 33.333 21.77 14.02 43.83 4.18
2874 2913 9.745880 CACTAAAATGTAACTAGATACATCCGT 57.254 33.333 21.77 14.49 43.83 4.69
2892 2931 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2893 2932 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2894 2933 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2895 2934 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2896 2935 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2897 2936 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
2905 2944 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2906 2945 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2907 2946 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2908 2947 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2909 2948 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2910 2949 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2911 2950 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2912 2951 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2913 2952 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2914 2953 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2915 2954 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2916 2955 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
2917 2956 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2954 2993 5.931724 TCCGTATGTAGTCCGTATCGAAATA 59.068 40.000 0.00 0.00 0.00 1.40
3021 3060 7.072177 TGTGTATGCTTGTTGACTTATTAGC 57.928 36.000 0.00 0.00 0.00 3.09
3189 3230 4.832266 ACACTTGATTGGGATTTGCACTTA 59.168 37.500 0.00 0.00 0.00 2.24
3259 3300 5.764686 TCAGTTGTTCTAGTGCATGTTGATT 59.235 36.000 0.00 0.00 0.00 2.57
3344 3385 6.299805 TCTCTAGAACAATACAGTTGCCAT 57.700 37.500 0.00 0.00 0.00 4.40
3364 3405 5.066375 GCCATGTTTGTAAGAGACATGCATA 59.934 40.000 0.00 0.00 45.70 3.14
3441 3486 5.111293 CACAATGAAAAGAAGCACCTTGTT 58.889 37.500 0.00 0.00 0.00 2.83
3442 3487 5.581874 CACAATGAAAAGAAGCACCTTGTTT 59.418 36.000 0.00 0.00 38.32 2.83
3443 3488 5.812127 ACAATGAAAAGAAGCACCTTGTTTC 59.188 36.000 1.35 3.34 36.23 2.78
3450 3495 5.500645 AGAAGCACCTTGTTTCTTGTAAC 57.499 39.130 0.00 0.00 43.84 2.50
3451 3496 5.193679 AGAAGCACCTTGTTTCTTGTAACT 58.806 37.500 0.00 0.00 43.84 2.24
3452 3497 5.652452 AGAAGCACCTTGTTTCTTGTAACTT 59.348 36.000 0.00 0.00 43.84 2.66
3453 3498 6.826741 AGAAGCACCTTGTTTCTTGTAACTTA 59.173 34.615 0.00 0.00 43.84 2.24
3454 3499 6.619801 AGCACCTTGTTTCTTGTAACTTAG 57.380 37.500 0.00 0.00 0.00 2.18
3455 3500 6.120220 AGCACCTTGTTTCTTGTAACTTAGT 58.880 36.000 0.00 0.00 0.00 2.24
3456 3501 6.038271 AGCACCTTGTTTCTTGTAACTTAGTG 59.962 38.462 0.00 0.00 0.00 2.74
3457 3502 6.183360 GCACCTTGTTTCTTGTAACTTAGTGT 60.183 38.462 0.00 0.00 31.02 3.55
3458 3503 7.627726 GCACCTTGTTTCTTGTAACTTAGTGTT 60.628 37.037 0.00 0.00 42.31 3.32
3459 3504 8.241367 CACCTTGTTTCTTGTAACTTAGTGTTT 58.759 33.333 0.00 0.00 39.89 2.83
3460 3505 9.452287 ACCTTGTTTCTTGTAACTTAGTGTTTA 57.548 29.630 0.00 0.00 39.89 2.01
3461 3506 9.712359 CCTTGTTTCTTGTAACTTAGTGTTTAC 57.288 33.333 0.00 0.00 39.89 2.01
3487 3532 9.454859 CATATAATTTTCTACTCCCTCCAATCC 57.545 37.037 0.00 0.00 0.00 3.01
3488 3533 5.796502 AATTTTCTACTCCCTCCAATCCA 57.203 39.130 0.00 0.00 0.00 3.41
3489 3534 6.347061 AATTTTCTACTCCCTCCAATCCAT 57.653 37.500 0.00 0.00 0.00 3.41
3490 3535 7.465900 AATTTTCTACTCCCTCCAATCCATA 57.534 36.000 0.00 0.00 0.00 2.74
3491 3536 7.654287 ATTTTCTACTCCCTCCAATCCATAT 57.346 36.000 0.00 0.00 0.00 1.78
3492 3537 6.439636 TTTCTACTCCCTCCAATCCATATG 57.560 41.667 0.00 0.00 0.00 1.78
3493 3538 5.354184 TCTACTCCCTCCAATCCATATGA 57.646 43.478 3.65 0.00 0.00 2.15
3494 3539 5.726560 TCTACTCCCTCCAATCCATATGAA 58.273 41.667 3.65 0.00 0.00 2.57
3495 3540 6.334296 TCTACTCCCTCCAATCCATATGAAT 58.666 40.000 3.65 0.00 0.00 2.57
3496 3541 5.937492 ACTCCCTCCAATCCATATGAATT 57.063 39.130 3.65 0.00 0.00 2.17
3497 3542 5.638133 ACTCCCTCCAATCCATATGAATTG 58.362 41.667 7.65 7.65 0.00 2.32
3498 3543 5.135020 ACTCCCTCCAATCCATATGAATTGT 59.865 40.000 12.97 0.00 0.00 2.71
3499 3544 5.634118 TCCCTCCAATCCATATGAATTGTC 58.366 41.667 12.97 0.00 0.00 3.18
3500 3545 4.456911 CCCTCCAATCCATATGAATTGTCG 59.543 45.833 12.97 4.22 0.00 4.35
3501 3546 4.083110 CCTCCAATCCATATGAATTGTCGC 60.083 45.833 12.97 0.00 0.00 5.19
3502 3547 4.717877 TCCAATCCATATGAATTGTCGCT 58.282 39.130 12.97 0.00 0.00 4.93
3503 3548 4.516321 TCCAATCCATATGAATTGTCGCTG 59.484 41.667 12.97 0.00 0.00 5.18
3504 3549 4.516321 CCAATCCATATGAATTGTCGCTGA 59.484 41.667 12.97 0.00 0.00 4.26
3505 3550 5.182570 CCAATCCATATGAATTGTCGCTGAT 59.817 40.000 12.97 0.00 0.00 2.90
3506 3551 6.294342 CCAATCCATATGAATTGTCGCTGATT 60.294 38.462 12.97 3.06 0.00 2.57
3507 3552 6.889301 ATCCATATGAATTGTCGCTGATTT 57.111 33.333 3.65 0.00 0.00 2.17
3508 3553 7.984422 ATCCATATGAATTGTCGCTGATTTA 57.016 32.000 3.65 0.00 0.00 1.40
3509 3554 7.425577 TCCATATGAATTGTCGCTGATTTAG 57.574 36.000 3.65 0.00 0.00 1.85
3510 3555 6.992123 TCCATATGAATTGTCGCTGATTTAGT 59.008 34.615 3.65 0.00 0.00 2.24
3511 3556 8.147704 TCCATATGAATTGTCGCTGATTTAGTA 58.852 33.333 3.65 0.00 0.00 1.82
3512 3557 8.223769 CCATATGAATTGTCGCTGATTTAGTAC 58.776 37.037 3.65 0.00 0.00 2.73
3513 3558 8.982685 CATATGAATTGTCGCTGATTTAGTACT 58.017 33.333 0.00 0.00 0.00 2.73
3514 3559 6.887376 TGAATTGTCGCTGATTTAGTACTC 57.113 37.500 0.00 0.00 0.00 2.59
3515 3560 5.810587 TGAATTGTCGCTGATTTAGTACTCC 59.189 40.000 0.00 0.00 0.00 3.85
3516 3561 3.416119 TGTCGCTGATTTAGTACTCCG 57.584 47.619 0.00 0.00 0.00 4.63
3517 3562 3.011818 TGTCGCTGATTTAGTACTCCGA 58.988 45.455 0.00 0.00 0.00 4.55
3518 3563 3.630769 TGTCGCTGATTTAGTACTCCGAT 59.369 43.478 0.00 0.00 0.00 4.18
3519 3564 4.220572 GTCGCTGATTTAGTACTCCGATC 58.779 47.826 0.00 2.45 0.00 3.69
3520 3565 3.252701 TCGCTGATTTAGTACTCCGATCC 59.747 47.826 0.00 0.00 0.00 3.36
3521 3566 3.004419 CGCTGATTTAGTACTCCGATCCA 59.996 47.826 0.00 0.00 0.00 3.41
3522 3567 4.321304 CGCTGATTTAGTACTCCGATCCAT 60.321 45.833 0.00 0.00 0.00 3.41
3523 3568 5.106277 CGCTGATTTAGTACTCCGATCCATA 60.106 44.000 0.00 0.00 0.00 2.74
3524 3569 6.404844 CGCTGATTTAGTACTCCGATCCATAT 60.405 42.308 0.00 0.00 0.00 1.78
3525 3570 7.324178 GCTGATTTAGTACTCCGATCCATATT 58.676 38.462 0.00 0.00 0.00 1.28
3526 3571 8.467598 GCTGATTTAGTACTCCGATCCATATTA 58.532 37.037 0.00 0.00 0.00 0.98
3527 3572 9.790389 CTGATTTAGTACTCCGATCCATATTAC 57.210 37.037 0.00 0.00 0.00 1.89
3528 3573 9.529823 TGATTTAGTACTCCGATCCATATTACT 57.470 33.333 0.00 0.00 0.00 2.24
3530 3575 7.606858 TTAGTACTCCGATCCATATTACTCG 57.393 40.000 0.00 0.00 0.00 4.18
3531 3576 5.558818 AGTACTCCGATCCATATTACTCGT 58.441 41.667 0.00 0.00 0.00 4.18
3532 3577 5.642919 AGTACTCCGATCCATATTACTCGTC 59.357 44.000 0.00 0.00 0.00 4.20
3533 3578 3.436015 ACTCCGATCCATATTACTCGTCG 59.564 47.826 0.00 0.00 0.00 5.12
3534 3579 2.161012 TCCGATCCATATTACTCGTCGC 59.839 50.000 0.00 0.00 0.00 5.19
3535 3580 2.161808 CCGATCCATATTACTCGTCGCT 59.838 50.000 0.00 0.00 0.00 4.93
3536 3581 3.164358 CGATCCATATTACTCGTCGCTG 58.836 50.000 0.00 0.00 0.00 5.18
3537 3582 3.502920 GATCCATATTACTCGTCGCTGG 58.497 50.000 0.00 0.00 0.00 4.85
3538 3583 2.304092 TCCATATTACTCGTCGCTGGT 58.696 47.619 0.00 0.00 0.00 4.00
3539 3584 2.691526 TCCATATTACTCGTCGCTGGTT 59.308 45.455 0.00 0.00 0.00 3.67
3540 3585 3.131577 TCCATATTACTCGTCGCTGGTTT 59.868 43.478 0.00 0.00 0.00 3.27
3541 3586 4.338964 TCCATATTACTCGTCGCTGGTTTA 59.661 41.667 0.00 0.00 0.00 2.01
3542 3587 5.045215 CCATATTACTCGTCGCTGGTTTAA 58.955 41.667 0.00 0.00 0.00 1.52
3576 3621 7.984422 AATCAGCGACAATTAATATGGATCA 57.016 32.000 0.00 0.00 0.00 2.92
3611 3656 6.252869 CCTTGTAATTGTAGTAGTAGTGTGCG 59.747 42.308 0.00 0.00 0.00 5.34
3692 3738 2.614481 GGGTCAAGCGTAGTCATTTGGA 60.614 50.000 0.00 0.00 0.00 3.53
3705 3751 5.683681 AGTCATTTGGAAAATGCACCTTTT 58.316 33.333 7.66 0.00 0.00 2.27
3706 3752 6.121590 AGTCATTTGGAAAATGCACCTTTTT 58.878 32.000 7.66 0.00 0.00 1.94
3849 3901 3.119101 ACTTTCTACCTCTGTACATGCCG 60.119 47.826 0.00 0.00 0.00 5.69
4012 4067 5.026121 TCAGGCCTAATAGTGAGATATGGG 58.974 45.833 3.98 0.00 0.00 4.00
4024 4079 5.670818 AGTGAGATATGGGATGGCATATGAT 59.329 40.000 6.97 0.00 0.00 2.45
4179 4369 6.012333 AGTGGTTTTGGTAGGGTGATAACATA 60.012 38.462 0.00 0.00 0.00 2.29
4233 4423 7.861630 ACGGATCATAATGTTGCAACTATTAC 58.138 34.615 28.61 16.51 0.00 1.89
4326 4518 0.594796 CTGTGTTGCGTTTGCTTCCC 60.595 55.000 0.00 0.00 43.34 3.97
4358 4550 4.022068 TGCTGTTGGAAATTAGCCAGAAAG 60.022 41.667 0.00 2.42 37.87 2.62
4723 4919 5.643379 TTTGGAGCCACAAATATGTCTTC 57.357 39.130 0.00 0.00 37.82 2.87
4773 4970 7.191593 ACTACCTCCGTTCCAAAATATAAGT 57.808 36.000 0.00 0.00 0.00 2.24
4812 5010 9.634300 GCTTAAACGTCTATATTTTAGAACAGC 57.366 33.333 0.00 0.00 0.00 4.40
4862 5060 8.893219 ACAGTTATGTAGAACACATCCATATG 57.107 34.615 0.00 0.00 44.99 1.78
4873 5071 4.005650 CACATCCATATGTATCCACTGGC 58.994 47.826 1.24 0.00 44.70 4.85
4932 5130 3.849574 TGGTCCTCTGATGTTTATTCCCA 59.150 43.478 0.00 0.00 0.00 4.37
5368 5566 8.571461 TTTTTGAGAGCACTGAATAATCTGAT 57.429 30.769 0.00 0.00 0.00 2.90
5675 5873 9.479549 AGTTTTGGAATCCACATATTTGTCTAT 57.520 29.630 0.00 0.00 32.34 1.98
5797 5995 3.758554 GGACCATCTACTGCACAAACATT 59.241 43.478 0.00 0.00 0.00 2.71
5945 6143 1.434188 ATGTGGAGAGGTTGGTGACA 58.566 50.000 0.00 0.00 39.83 3.58
6136 6334 8.472007 TTGTGGAGTTTGTTATGGTTAGAATT 57.528 30.769 0.00 0.00 0.00 2.17
6252 6451 5.366768 TCCTATAATGCTAAGAGTGTTGCCT 59.633 40.000 0.00 0.00 0.00 4.75
6402 6622 1.053424 TCACGTAGGGTTTCAGCCTT 58.947 50.000 0.00 0.00 45.25 4.35
6403 6623 2.028748 GTCACGTAGGGTTTCAGCCTTA 60.029 50.000 0.00 0.00 45.25 2.69
6404 6624 2.633967 TCACGTAGGGTTTCAGCCTTAA 59.366 45.455 0.00 0.00 45.25 1.85
6405 6625 3.262405 TCACGTAGGGTTTCAGCCTTAAT 59.738 43.478 0.00 0.00 45.25 1.40
6406 6626 4.007659 CACGTAGGGTTTCAGCCTTAATT 58.992 43.478 0.00 0.00 45.25 1.40
6407 6627 4.457949 CACGTAGGGTTTCAGCCTTAATTT 59.542 41.667 0.00 0.00 45.25 1.82
6408 6628 4.698780 ACGTAGGGTTTCAGCCTTAATTTC 59.301 41.667 0.00 0.00 45.25 2.17
6409 6629 4.095932 CGTAGGGTTTCAGCCTTAATTTCC 59.904 45.833 0.00 0.00 45.25 3.13
6410 6630 3.441101 AGGGTTTCAGCCTTAATTTCCC 58.559 45.455 0.00 0.00 45.25 3.97
6411 6631 2.165641 GGGTTTCAGCCTTAATTTCCCG 59.834 50.000 0.00 0.00 31.81 5.14
6412 6632 3.086282 GGTTTCAGCCTTAATTTCCCGA 58.914 45.455 0.00 0.00 0.00 5.14
6413 6633 3.508402 GGTTTCAGCCTTAATTTCCCGAA 59.492 43.478 0.00 0.00 0.00 4.30
6414 6634 4.482386 GTTTCAGCCTTAATTTCCCGAAC 58.518 43.478 0.00 0.00 0.00 3.95
6415 6635 2.718563 TCAGCCTTAATTTCCCGAACC 58.281 47.619 0.00 0.00 0.00 3.62
6416 6636 2.040545 TCAGCCTTAATTTCCCGAACCA 59.959 45.455 0.00 0.00 0.00 3.67
6417 6637 2.163613 CAGCCTTAATTTCCCGAACCAC 59.836 50.000 0.00 0.00 0.00 4.16
6418 6638 2.041216 AGCCTTAATTTCCCGAACCACT 59.959 45.455 0.00 0.00 0.00 4.00
6419 6639 3.264964 AGCCTTAATTTCCCGAACCACTA 59.735 43.478 0.00 0.00 0.00 2.74
6420 6640 4.011698 GCCTTAATTTCCCGAACCACTAA 58.988 43.478 0.00 0.00 0.00 2.24
6421 6641 4.142534 GCCTTAATTTCCCGAACCACTAAC 60.143 45.833 0.00 0.00 0.00 2.34
6509 6733 3.118956 AGAGAACAGCTGGGAAATAGTCG 60.119 47.826 19.93 0.00 0.00 4.18
6997 7221 3.997021 AGTTGTCGCTGATTTAGGACAAG 59.003 43.478 5.77 0.00 42.21 3.16
7058 7289 6.296803 TCTAGATACGGATGTGTGTAGACAT 58.703 40.000 0.00 0.00 37.23 3.06
7069 7300 6.597262 TGTGTGTAGACATGTTTTAGTGTG 57.403 37.500 0.00 0.00 33.63 3.82
7072 7303 5.989168 TGTGTAGACATGTTTTAGTGTGAGG 59.011 40.000 0.00 0.00 0.00 3.86
7089 7320 5.179742 GTGTGAGGTACATCCGTATCTAGAG 59.820 48.000 4.87 0.00 39.26 2.43
7141 7372 3.978687 AGGGAGTATTAAATCAGCGACG 58.021 45.455 0.00 0.00 0.00 5.12
7162 7393 4.042435 ACGACTAATTTGGAAAGGAGGGAA 59.958 41.667 0.00 0.00 0.00 3.97
7163 7394 4.395231 CGACTAATTTGGAAAGGAGGGAAC 59.605 45.833 0.00 0.00 0.00 3.62
7175 7407 7.794683 TGGAAAGGAGGGAACATATATTAGTCT 59.205 37.037 0.00 0.00 0.00 3.24
7309 7545 7.554118 GGTGGATGTCTGAAGATCATTTCTTTA 59.446 37.037 0.00 0.00 44.88 1.85
7432 7668 4.989279 AGTCAGCATTGTTTGTTGTTCT 57.011 36.364 0.00 0.00 37.75 3.01
7455 7691 8.144155 TCTGGATAATCTCTAATCGCTATACG 57.856 38.462 0.00 0.00 45.62 3.06
7512 7748 0.530744 GGATTTTGGGGCCTTTCGAC 59.469 55.000 0.84 0.00 0.00 4.20
7539 7775 6.211384 CAGGGTATTTTGGGAAATGAAGTTCT 59.789 38.462 4.17 0.00 36.22 3.01
7752 7990 6.574269 GCCAATAAGGTAAAAAGCATGGTCTT 60.574 38.462 0.00 0.00 40.61 3.01
7753 7991 7.363443 GCCAATAAGGTAAAAAGCATGGTCTTA 60.363 37.037 0.00 0.86 40.61 2.10
8153 8392 1.069090 AGCAAGGCGAAACTCGTGA 59.931 52.632 0.00 0.00 42.81 4.35
8275 8517 1.002134 CCAATTCTGTCGTGCCCCT 60.002 57.895 0.00 0.00 0.00 4.79
8316 8596 2.935238 GCTTATGCTCTTCGTGTTCCCA 60.935 50.000 0.00 0.00 36.03 4.37
8429 8750 1.547372 GAAACTGGAGCCAATGCACAT 59.453 47.619 0.00 0.00 41.13 3.21
8434 8755 1.035139 GGAGCCAATGCACATAAGGG 58.965 55.000 0.00 0.00 41.13 3.95
8464 8912 4.280494 CCGGCTGGGATACGACGG 62.280 72.222 2.57 0.00 38.47 4.79
8541 8994 2.666026 GCTGCTACTGTTTCCAAAAGC 58.334 47.619 0.00 0.00 0.00 3.51
8546 8999 1.102978 ACTGTTTCCAAAAGCGCTGT 58.897 45.000 12.58 0.14 0.00 4.40
8550 9003 4.202111 ACTGTTTCCAAAAGCGCTGTAATT 60.202 37.500 12.58 0.00 0.00 1.40
8553 9006 1.543802 TCCAAAAGCGCTGTAATTGGG 59.456 47.619 29.02 20.27 40.69 4.12
8588 9041 1.489824 CCAACCAAACGCGTCGTAG 59.510 57.895 14.44 4.40 39.99 3.51
8635 9089 0.533755 GATCAGCTATGGCAACCGCT 60.534 55.000 3.10 0.00 41.70 5.52
8686 9140 2.627699 GGTCTGTCTTTTTGCCATGGAA 59.372 45.455 18.40 0.00 0.00 3.53
8701 9155 5.843969 TGCCATGGAATACTAGTAGAATCCA 59.156 40.000 25.29 25.29 40.90 3.41
8764 9218 6.012421 AGTTTACCTAGAGCTTCCCTCAAAAT 60.012 38.462 0.00 0.00 43.31 1.82
8765 9219 4.227864 ACCTAGAGCTTCCCTCAAAATG 57.772 45.455 0.00 0.00 43.31 2.32
8767 9221 3.200825 CCTAGAGCTTCCCTCAAAATGGA 59.799 47.826 0.00 0.00 43.31 3.41
8808 9262 7.973944 AGCTACAAGTTTAACCAAGAAAAGTTG 59.026 33.333 11.76 11.76 45.29 3.16
8864 9318 1.747709 AGCATGCCAGTGAGATGTTC 58.252 50.000 15.66 0.00 0.00 3.18
8865 9319 0.737219 GCATGCCAGTGAGATGTTCC 59.263 55.000 6.36 0.00 0.00 3.62
8889 9343 1.133253 CATTGCGTGCACTCTTCCG 59.867 57.895 16.19 0.91 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.821216 CCCTTGGACGCAAAGTATGT 58.179 50.000 0.00 0.00 0.00 2.29
1 2 0.451783 GCCCTTGGACGCAAAGTATG 59.548 55.000 0.00 0.00 0.00 2.39
2 3 1.024579 CGCCCTTGGACGCAAAGTAT 61.025 55.000 0.00 0.00 0.00 2.12
3 4 1.669760 CGCCCTTGGACGCAAAGTA 60.670 57.895 0.00 0.00 0.00 2.24
4 5 2.978010 CGCCCTTGGACGCAAAGT 60.978 61.111 0.00 0.00 0.00 2.66
92 93 2.907042 TCCTTTGTTCCCTTCTCTCTCC 59.093 50.000 0.00 0.00 0.00 3.71
172 174 1.304052 AGAGACAGAGCTGCTCCGT 60.304 57.895 25.09 21.50 35.69 4.69
185 187 3.452627 AGTGAGGAGAGAGAGAGAGAGAC 59.547 52.174 0.00 0.00 0.00 3.36
310 316 1.917282 TGCCTCTGCCTCTGCTTCT 60.917 57.895 0.00 0.00 38.71 2.85
311 317 1.744741 GTGCCTCTGCCTCTGCTTC 60.745 63.158 0.00 0.00 38.71 3.86
312 318 2.350514 GTGCCTCTGCCTCTGCTT 59.649 61.111 0.00 0.00 38.71 3.91
313 319 3.715097 GGTGCCTCTGCCTCTGCT 61.715 66.667 0.00 0.00 38.71 4.24
314 320 3.678951 GAGGTGCCTCTGCCTCTGC 62.679 68.421 10.80 0.00 45.78 4.26
315 321 2.583520 GAGGTGCCTCTGCCTCTG 59.416 66.667 10.80 0.00 45.78 3.35
931 940 1.002502 GTTCTGGAAGGTTCGGGGG 60.003 63.158 0.00 0.00 0.00 5.40
1200 1209 1.526917 GTAGTAGCCGGCGTAGGGA 60.527 63.158 23.20 2.33 0.00 4.20
1588 1597 2.498167 GTCACAGGCAGAATCAACAGT 58.502 47.619 0.00 0.00 0.00 3.55
1591 1600 1.728971 CTCGTCACAGGCAGAATCAAC 59.271 52.381 0.00 0.00 0.00 3.18
1624 1633 3.952323 TGTCAGAGTCTAATAAGGGACGG 59.048 47.826 0.00 0.00 37.52 4.79
1625 1634 5.776173 ATGTCAGAGTCTAATAAGGGACG 57.224 43.478 0.00 0.00 37.52 4.79
1670 1689 6.183360 ACCAATAAACAGGTGAACAAACTCTG 60.183 38.462 0.00 0.00 0.00 3.35
1713 1732 6.367374 TCATGACAACCAGTAATAGGAACA 57.633 37.500 0.00 0.00 0.00 3.18
1740 1759 2.349886 CACAAGCCGAAATCTAGCTGAC 59.650 50.000 0.00 0.00 36.84 3.51
1756 1775 1.230635 CCCGGCAGAAGTCACACAAG 61.231 60.000 0.00 0.00 0.00 3.16
1928 1947 4.097286 TGACCAAGAACTGCAAAACTTACC 59.903 41.667 0.00 0.00 0.00 2.85
1964 1983 4.364415 GTCATGCGACTTTCTAGACTCT 57.636 45.455 0.00 0.00 39.22 3.24
2085 2104 4.641094 AGTCAGTAGAGGTGCATACACTAC 59.359 45.833 15.90 15.90 46.57 2.73
2103 2122 2.862536 CAGACATGCCACGAATAGTCAG 59.137 50.000 0.00 0.00 0.00 3.51
2129 2148 2.094390 ACAGATGGTGCATGCATCAAAC 60.094 45.455 35.53 29.06 40.75 2.93
2330 2350 2.224744 TGCTACAAGGAACATCAAGGCA 60.225 45.455 0.00 0.00 0.00 4.75
2333 2353 5.695851 AAACTGCTACAAGGAACATCAAG 57.304 39.130 0.00 0.00 0.00 3.02
2336 2356 7.982354 ACTAGATAAACTGCTACAAGGAACATC 59.018 37.037 0.00 0.00 0.00 3.06
2514 2545 1.404843 AGGAATAGGCCTGAGACGTC 58.595 55.000 17.99 7.70 36.76 4.34
2515 2546 3.617535 AGGAATAGGCCTGAGACGT 57.382 52.632 17.99 2.98 36.76 4.34
2549 2584 6.740960 GCATGTATCCACTCTCAAATCTAGCT 60.741 42.308 0.00 0.00 0.00 3.32
2605 2640 7.597743 CCATTATTGAGATTCATTAAAGCTGGC 59.402 37.037 0.00 0.00 32.59 4.85
2793 2832 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
2794 2833 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
2795 2834 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
2796 2835 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
2797 2836 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
2798 2837 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
2799 2838 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
2800 2839 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2801 2840 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
2802 2841 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
2803 2842 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
2811 2850 8.622157 CCGTATCTAGACAAATCTAAGACAAGA 58.378 37.037 0.00 0.00 36.98 3.02
2812 2851 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
2813 2852 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
2814 2853 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
2815 2854 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
2816 2855 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
2847 2886 9.745880 CGGATGTATCTAGTTACATTTTAGTGT 57.254 33.333 21.77 4.20 41.67 3.55
2848 2887 9.745880 ACGGATGTATCTAGTTACATTTTAGTG 57.254 33.333 21.77 13.11 41.67 2.74
2866 2905 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
2867 2906 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
2868 2907 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
2869 2908 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
2870 2909 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
2871 2910 8.622157 TCTTGTCTTAGATTTGTCTAGATACGG 58.378 37.037 0.00 0.00 0.00 4.02
2879 2918 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
2880 2919 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
2881 2920 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
2882 2921 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
2883 2922 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
2884 2923 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2885 2924 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
2886 2925 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
2887 2926 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
2888 2927 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
2889 2928 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
2890 2929 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
2891 2930 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
2892 2931 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
2893 2932 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
2894 2933 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
2895 2934 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
2896 2935 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
2897 2936 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
2898 2937 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2899 2938 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2900 2939 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2901 2940 0.042131 ACATACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
2902 2941 0.396695 GACATACTCCCTCCGTCCCA 60.397 60.000 0.00 0.00 0.00 4.37
2903 2942 0.106116 AGACATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
2904 2943 2.653234 TAGACATACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
2905 2944 6.413052 TGTATATAGACATACTCCCTCCGTC 58.587 44.000 0.00 0.00 33.37 4.79
2906 2945 6.384342 TGTATATAGACATACTCCCTCCGT 57.616 41.667 0.00 0.00 33.37 4.69
2907 2946 6.487331 GGATGTATATAGACATACTCCCTCCG 59.513 46.154 14.35 0.00 40.18 4.63
2908 2947 6.487331 CGGATGTATATAGACATACTCCCTCC 59.513 46.154 18.29 11.24 40.18 4.30
2909 2948 7.055378 ACGGATGTATATAGACATACTCCCTC 58.945 42.308 18.29 4.26 40.18 4.30
2910 2949 6.971340 ACGGATGTATATAGACATACTCCCT 58.029 40.000 18.29 3.50 40.18 4.20
2911 2950 8.784994 CATACGGATGTATATAGACATACTCCC 58.215 40.741 18.29 11.92 40.18 4.30
2912 2951 9.339850 ACATACGGATGTATATAGACATACTCC 57.660 37.037 12.79 13.07 44.77 3.85
2917 2956 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
3021 3060 5.924475 AAAAGACAAAGTACCATCGTGAG 57.076 39.130 0.00 0.00 0.00 3.51
3189 3230 5.883115 GCCACCTAGAAGCTTAAATCTTTCT 59.117 40.000 0.00 0.00 0.00 2.52
3344 3385 6.230472 ACAGTATGCATGTCTCTTACAAACA 58.770 36.000 10.16 0.00 40.53 2.83
3364 3405 3.877508 GTGCCTCTTACTTCACAAACAGT 59.122 43.478 0.00 0.00 0.00 3.55
3461 3506 9.454859 GGATTGGAGGGAGTAGAAAATTATATG 57.545 37.037 0.00 0.00 0.00 1.78
3462 3507 9.182642 TGGATTGGAGGGAGTAGAAAATTATAT 57.817 33.333 0.00 0.00 0.00 0.86
3463 3508 8.575736 TGGATTGGAGGGAGTAGAAAATTATA 57.424 34.615 0.00 0.00 0.00 0.98
3464 3509 7.465900 TGGATTGGAGGGAGTAGAAAATTAT 57.534 36.000 0.00 0.00 0.00 1.28
3465 3510 6.901615 TGGATTGGAGGGAGTAGAAAATTA 57.098 37.500 0.00 0.00 0.00 1.40
3466 3511 5.796502 TGGATTGGAGGGAGTAGAAAATT 57.203 39.130 0.00 0.00 0.00 1.82
3467 3512 7.295672 TCATATGGATTGGAGGGAGTAGAAAAT 59.704 37.037 2.13 0.00 0.00 1.82
3468 3513 6.619437 TCATATGGATTGGAGGGAGTAGAAAA 59.381 38.462 2.13 0.00 0.00 2.29
3469 3514 6.150332 TCATATGGATTGGAGGGAGTAGAAA 58.850 40.000 2.13 0.00 0.00 2.52
3470 3515 5.726560 TCATATGGATTGGAGGGAGTAGAA 58.273 41.667 2.13 0.00 0.00 2.10
3471 3516 5.354184 TCATATGGATTGGAGGGAGTAGA 57.646 43.478 2.13 0.00 0.00 2.59
3472 3517 6.633325 ATTCATATGGATTGGAGGGAGTAG 57.367 41.667 2.13 0.00 0.00 2.57
3473 3518 6.332635 ACAATTCATATGGATTGGAGGGAGTA 59.667 38.462 31.31 0.00 0.00 2.59
3474 3519 5.135020 ACAATTCATATGGATTGGAGGGAGT 59.865 40.000 31.31 12.94 0.00 3.85
3475 3520 5.638133 ACAATTCATATGGATTGGAGGGAG 58.362 41.667 31.31 12.34 0.00 4.30
3476 3521 5.634118 GACAATTCATATGGATTGGAGGGA 58.366 41.667 31.31 0.00 0.00 4.20
3477 3522 4.456911 CGACAATTCATATGGATTGGAGGG 59.543 45.833 31.31 17.79 0.00 4.30
3478 3523 4.083110 GCGACAATTCATATGGATTGGAGG 60.083 45.833 31.31 22.52 0.00 4.30
3479 3524 4.758674 AGCGACAATTCATATGGATTGGAG 59.241 41.667 31.31 25.56 0.00 3.86
3480 3525 4.516321 CAGCGACAATTCATATGGATTGGA 59.484 41.667 31.31 0.00 0.00 3.53
3481 3526 4.516321 TCAGCGACAATTCATATGGATTGG 59.484 41.667 31.31 19.84 0.00 3.16
3482 3527 5.678132 TCAGCGACAATTCATATGGATTG 57.322 39.130 28.18 28.18 0.00 2.67
3483 3528 6.889301 AATCAGCGACAATTCATATGGATT 57.111 33.333 3.14 3.14 0.00 3.01
3484 3529 6.889301 AAATCAGCGACAATTCATATGGAT 57.111 33.333 2.13 0.00 0.00 3.41
3485 3530 6.992123 ACTAAATCAGCGACAATTCATATGGA 59.008 34.615 2.13 0.00 0.00 3.41
3486 3531 7.194607 ACTAAATCAGCGACAATTCATATGG 57.805 36.000 2.13 0.00 0.00 2.74
3487 3532 8.982685 AGTACTAAATCAGCGACAATTCATATG 58.017 33.333 0.00 0.00 0.00 1.78
3488 3533 9.197694 GAGTACTAAATCAGCGACAATTCATAT 57.802 33.333 0.00 0.00 0.00 1.78
3489 3534 7.652105 GGAGTACTAAATCAGCGACAATTCATA 59.348 37.037 0.00 0.00 0.00 2.15
3490 3535 6.480320 GGAGTACTAAATCAGCGACAATTCAT 59.520 38.462 0.00 0.00 0.00 2.57
3491 3536 5.810587 GGAGTACTAAATCAGCGACAATTCA 59.189 40.000 0.00 0.00 0.00 2.57
3492 3537 5.051641 CGGAGTACTAAATCAGCGACAATTC 60.052 44.000 0.00 0.00 0.00 2.17
3493 3538 4.804139 CGGAGTACTAAATCAGCGACAATT 59.196 41.667 0.00 0.00 0.00 2.32
3494 3539 4.097437 TCGGAGTACTAAATCAGCGACAAT 59.903 41.667 0.00 0.00 0.00 2.71
3495 3540 3.441222 TCGGAGTACTAAATCAGCGACAA 59.559 43.478 0.00 0.00 0.00 3.18
3496 3541 3.011818 TCGGAGTACTAAATCAGCGACA 58.988 45.455 0.00 0.00 0.00 4.35
3497 3542 3.687572 TCGGAGTACTAAATCAGCGAC 57.312 47.619 0.00 0.00 0.00 5.19
3498 3543 3.252701 GGATCGGAGTACTAAATCAGCGA 59.747 47.826 0.00 0.00 0.00 4.93
3499 3544 3.004419 TGGATCGGAGTACTAAATCAGCG 59.996 47.826 0.00 0.00 0.00 5.18
3500 3545 4.585955 TGGATCGGAGTACTAAATCAGC 57.414 45.455 0.00 0.00 0.00 4.26
3501 3546 9.790389 GTAATATGGATCGGAGTACTAAATCAG 57.210 37.037 0.00 0.00 0.00 2.90
3502 3547 9.529823 AGTAATATGGATCGGAGTACTAAATCA 57.470 33.333 0.00 0.00 0.00 2.57
3504 3549 8.675504 CGAGTAATATGGATCGGAGTACTAAAT 58.324 37.037 0.00 0.00 0.00 1.40
3505 3550 7.663081 ACGAGTAATATGGATCGGAGTACTAAA 59.337 37.037 0.00 0.00 39.42 1.85
3506 3551 7.164122 ACGAGTAATATGGATCGGAGTACTAA 58.836 38.462 0.00 0.00 39.42 2.24
3507 3552 6.705302 ACGAGTAATATGGATCGGAGTACTA 58.295 40.000 0.00 0.00 39.42 1.82
3508 3553 5.558818 ACGAGTAATATGGATCGGAGTACT 58.441 41.667 0.00 0.00 39.42 2.73
3509 3554 5.445673 CGACGAGTAATATGGATCGGAGTAC 60.446 48.000 0.00 0.00 39.42 2.73
3510 3555 4.628766 CGACGAGTAATATGGATCGGAGTA 59.371 45.833 0.00 0.00 39.42 2.59
3511 3556 3.436015 CGACGAGTAATATGGATCGGAGT 59.564 47.826 0.00 0.00 39.42 3.85
3512 3557 3.728268 GCGACGAGTAATATGGATCGGAG 60.728 52.174 0.00 3.77 39.42 4.63
3513 3558 2.161012 GCGACGAGTAATATGGATCGGA 59.839 50.000 0.00 0.00 39.42 4.55
3514 3559 2.161808 AGCGACGAGTAATATGGATCGG 59.838 50.000 0.00 0.00 39.42 4.18
3515 3560 3.164358 CAGCGACGAGTAATATGGATCG 58.836 50.000 0.00 3.05 40.86 3.69
3516 3561 3.057456 ACCAGCGACGAGTAATATGGATC 60.057 47.826 0.00 0.00 0.00 3.36
3517 3562 2.891580 ACCAGCGACGAGTAATATGGAT 59.108 45.455 0.00 0.00 0.00 3.41
3518 3563 2.304092 ACCAGCGACGAGTAATATGGA 58.696 47.619 0.00 0.00 0.00 3.41
3519 3564 2.795175 ACCAGCGACGAGTAATATGG 57.205 50.000 0.00 0.00 0.00 2.74
3520 3565 6.419710 TCATTAAACCAGCGACGAGTAATATG 59.580 38.462 0.00 0.00 0.00 1.78
3521 3566 6.509656 TCATTAAACCAGCGACGAGTAATAT 58.490 36.000 0.00 0.00 0.00 1.28
3522 3567 5.893687 TCATTAAACCAGCGACGAGTAATA 58.106 37.500 0.00 0.00 0.00 0.98
3523 3568 4.751060 TCATTAAACCAGCGACGAGTAAT 58.249 39.130 0.00 0.00 0.00 1.89
3524 3569 4.171005 CTCATTAAACCAGCGACGAGTAA 58.829 43.478 0.00 0.00 0.00 2.24
3525 3570 3.192001 ACTCATTAAACCAGCGACGAGTA 59.808 43.478 0.00 0.00 31.01 2.59
3526 3571 2.029290 ACTCATTAAACCAGCGACGAGT 60.029 45.455 0.00 0.00 0.00 4.18
3527 3572 2.607187 ACTCATTAAACCAGCGACGAG 58.393 47.619 0.00 0.00 0.00 4.18
3528 3573 2.736144 ACTCATTAAACCAGCGACGA 57.264 45.000 0.00 0.00 0.00 4.20
3529 3574 3.508762 AGTACTCATTAAACCAGCGACG 58.491 45.455 0.00 0.00 0.00 5.12
3530 3575 6.956299 TTTAGTACTCATTAAACCAGCGAC 57.044 37.500 0.00 0.00 0.00 5.19
3531 3576 7.324935 TGATTTAGTACTCATTAAACCAGCGA 58.675 34.615 0.00 0.00 0.00 4.93
3532 3577 7.534085 TGATTTAGTACTCATTAAACCAGCG 57.466 36.000 0.00 0.00 0.00 5.18
3533 3578 7.410485 GCTGATTTAGTACTCATTAAACCAGC 58.590 38.462 15.99 15.99 44.59 4.85
3534 3579 7.491372 TCGCTGATTTAGTACTCATTAAACCAG 59.509 37.037 0.00 2.05 34.76 4.00
3535 3580 7.277098 GTCGCTGATTTAGTACTCATTAAACCA 59.723 37.037 0.00 0.00 0.00 3.67
3536 3581 7.277098 TGTCGCTGATTTAGTACTCATTAAACC 59.723 37.037 0.00 0.00 0.00 3.27
3537 3582 8.181487 TGTCGCTGATTTAGTACTCATTAAAC 57.819 34.615 0.00 0.00 0.00 2.01
3538 3583 8.766000 TTGTCGCTGATTTAGTACTCATTAAA 57.234 30.769 0.00 0.00 0.00 1.52
3539 3584 8.942338 ATTGTCGCTGATTTAGTACTCATTAA 57.058 30.769 0.00 0.00 0.00 1.40
3540 3585 8.942338 AATTGTCGCTGATTTAGTACTCATTA 57.058 30.769 0.00 0.00 0.00 1.90
3541 3586 7.849804 AATTGTCGCTGATTTAGTACTCATT 57.150 32.000 0.00 0.00 0.00 2.57
3542 3587 8.942338 TTAATTGTCGCTGATTTAGTACTCAT 57.058 30.769 0.00 0.00 0.00 2.90
3576 3621 6.262207 ACTACAATTACAAGGTACTCCCTCT 58.738 40.000 0.00 0.00 45.47 3.69
3611 3656 6.647067 AGTGAACTCTTCAGTGCATAACTTAC 59.353 38.462 0.00 0.00 40.63 2.34
3716 3766 8.521176 AGAAAGTACGTACTATGTTGTCTGAAT 58.479 33.333 27.59 5.31 34.99 2.57
3849 3901 2.878406 TGCAGCCAAAAGTTCACTAGTC 59.122 45.455 0.00 0.00 0.00 2.59
4233 4423 4.882671 ATGAGCTTGCTAAAATACCACG 57.117 40.909 0.00 0.00 0.00 4.94
4326 4518 8.078596 GGCTAATTTCCAACAGCAGATTATAAG 58.921 37.037 0.00 0.00 35.69 1.73
4481 4673 6.713762 TCAAAGGAAAAATGCTCTCAAAGA 57.286 33.333 0.00 0.00 0.00 2.52
4483 4675 8.420222 TGTAATCAAAGGAAAAATGCTCTCAAA 58.580 29.630 0.00 0.00 0.00 2.69
4484 4676 7.950512 TGTAATCAAAGGAAAAATGCTCTCAA 58.049 30.769 0.00 0.00 0.00 3.02
4485 4677 7.523293 TGTAATCAAAGGAAAAATGCTCTCA 57.477 32.000 0.00 0.00 0.00 3.27
4486 4678 9.508567 GTATGTAATCAAAGGAAAAATGCTCTC 57.491 33.333 0.00 0.00 0.00 3.20
4487 4679 8.470002 GGTATGTAATCAAAGGAAAAATGCTCT 58.530 33.333 0.00 0.00 0.00 4.09
4488 4680 7.706607 GGGTATGTAATCAAAGGAAAAATGCTC 59.293 37.037 0.00 0.00 0.00 4.26
4489 4681 7.400052 AGGGTATGTAATCAAAGGAAAAATGCT 59.600 33.333 0.00 0.00 0.00 3.79
4490 4682 7.555965 AGGGTATGTAATCAAAGGAAAAATGC 58.444 34.615 0.00 0.00 0.00 3.56
4492 4684 9.762381 TGTAGGGTATGTAATCAAAGGAAAAAT 57.238 29.630 0.00 0.00 0.00 1.82
4493 4685 9.016438 GTGTAGGGTATGTAATCAAAGGAAAAA 57.984 33.333 0.00 0.00 0.00 1.94
4558 4752 5.163088 ACTCCACTCCATTAGAACCTTTTGT 60.163 40.000 0.00 0.00 0.00 2.83
4773 4970 5.357596 AGACGTTTAAGCCTACCAAAACAAA 59.642 36.000 0.00 0.00 32.61 2.83
4862 5060 3.618690 AGAACTCTTGCCAGTGGATAC 57.381 47.619 15.20 0.00 0.00 2.24
4873 5071 9.290483 GTTTAGAGGTTTTCAAAAGAACTCTTG 57.710 33.333 13.81 0.00 36.12 3.02
5065 5263 2.393271 AGTATCACAGCAGCCAAGTC 57.607 50.000 0.00 0.00 0.00 3.01
5101 5299 3.656559 TCCACAAGTTAGGCGTAGAAAC 58.343 45.455 0.00 0.00 0.00 2.78
5163 5361 5.063944 GGCTGACACAATGTAACAGTGATAG 59.936 44.000 16.01 4.22 37.05 2.08
5797 5995 2.106511 AGGCTAGCAAACCTTCTTGTCA 59.893 45.455 18.24 0.00 29.74 3.58
5945 6143 5.449553 AGGAAAGGAAGTTTGAAGTGACAT 58.550 37.500 0.00 0.00 0.00 3.06
5982 6180 2.934886 TGCAGCACAGCATATATGGA 57.065 45.000 14.51 0.00 40.11 3.41
6136 6334 5.477291 TGGAAAAATACGAAATGGGCAAGTA 59.523 36.000 0.00 0.00 0.00 2.24
6200 6399 4.220821 ACCTTCTCACACATGACGAGTAAT 59.779 41.667 0.00 0.00 0.00 1.89
6337 6536 5.670792 ATCAAATCTGGTCGTAGTGGTAA 57.329 39.130 0.00 0.00 0.00 2.85
6401 6621 3.436359 GCGTTAGTGGTTCGGGAAATTAA 59.564 43.478 0.00 0.00 0.00 1.40
6402 6622 3.002102 GCGTTAGTGGTTCGGGAAATTA 58.998 45.455 0.00 0.00 0.00 1.40
6403 6623 1.808343 GCGTTAGTGGTTCGGGAAATT 59.192 47.619 0.00 0.00 0.00 1.82
6404 6624 1.445871 GCGTTAGTGGTTCGGGAAAT 58.554 50.000 0.00 0.00 0.00 2.17
6405 6625 0.603439 GGCGTTAGTGGTTCGGGAAA 60.603 55.000 0.00 0.00 0.00 3.13
6406 6626 1.004679 GGCGTTAGTGGTTCGGGAA 60.005 57.895 0.00 0.00 0.00 3.97
6407 6627 2.162338 CTGGCGTTAGTGGTTCGGGA 62.162 60.000 0.00 0.00 0.00 5.14
6408 6628 1.740296 CTGGCGTTAGTGGTTCGGG 60.740 63.158 0.00 0.00 0.00 5.14
6409 6629 0.320073 TTCTGGCGTTAGTGGTTCGG 60.320 55.000 0.00 0.00 0.00 4.30
6410 6630 1.068474 CTTCTGGCGTTAGTGGTTCG 58.932 55.000 0.00 0.00 0.00 3.95
6411 6631 2.165319 ACTTCTGGCGTTAGTGGTTC 57.835 50.000 0.00 0.00 0.00 3.62
6412 6632 2.218603 CAACTTCTGGCGTTAGTGGTT 58.781 47.619 0.00 0.00 0.00 3.67
6413 6633 1.542547 CCAACTTCTGGCGTTAGTGGT 60.543 52.381 0.00 0.00 38.76 4.16
6414 6634 1.156736 CCAACTTCTGGCGTTAGTGG 58.843 55.000 0.00 0.00 38.76 4.00
6415 6635 2.163818 TCCAACTTCTGGCGTTAGTG 57.836 50.000 0.00 0.00 45.98 2.74
6416 6636 2.922740 TTCCAACTTCTGGCGTTAGT 57.077 45.000 0.00 0.00 45.98 2.24
6417 6637 3.334691 TCATTCCAACTTCTGGCGTTAG 58.665 45.455 0.00 0.00 45.98 2.34
6418 6638 3.410631 TCATTCCAACTTCTGGCGTTA 57.589 42.857 0.00 0.00 45.98 3.18
6419 6639 2.270352 TCATTCCAACTTCTGGCGTT 57.730 45.000 0.00 0.00 45.98 4.84
6420 6640 1.880027 GTTCATTCCAACTTCTGGCGT 59.120 47.619 0.00 0.00 45.98 5.68
6421 6641 2.095567 CAGTTCATTCCAACTTCTGGCG 60.096 50.000 0.00 0.00 45.98 5.69
6434 6654 3.737559 TGGACATAAGGCCAGTTCATT 57.262 42.857 5.01 0.00 0.00 2.57
6509 6733 8.810652 TCAAACCATAGTTTTCATTTAAGCAC 57.189 30.769 0.00 0.00 43.82 4.40
6992 7216 2.232941 TCGGTGGGAGTACAATCTTGTC 59.767 50.000 0.00 0.00 42.35 3.18
6997 7221 1.760613 TGGATCGGTGGGAGTACAATC 59.239 52.381 0.00 0.00 0.00 2.67
7058 7289 4.039488 ACGGATGTACCTCACACTAAAACA 59.961 41.667 0.41 0.00 40.86 2.83
7069 7300 7.608761 AGATTTCTCTAGATACGGATGTACCTC 59.391 40.741 0.00 0.00 36.31 3.85
7141 7372 5.321927 TGTTCCCTCCTTTCCAAATTAGTC 58.678 41.667 0.00 0.00 0.00 2.59
7309 7545 1.569072 ACTTGGGACCACTTCAGGTTT 59.431 47.619 0.00 0.00 43.38 3.27
7432 7668 7.336176 ACACGTATAGCGATTAGAGATTATCCA 59.664 37.037 0.00 0.00 44.77 3.41
7455 7691 3.004734 ACAGAGCCATTTTTACAGCACAC 59.995 43.478 0.00 0.00 0.00 3.82
7512 7748 2.757868 TCATTTCCCAAAATACCCTGCG 59.242 45.455 0.00 0.00 33.27 5.18
7539 7775 4.887071 AGGAAAGAAGTTGCATACACACAA 59.113 37.500 0.00 0.00 0.00 3.33
7752 7990 6.153680 ACAGTTGGGTCAACAAAGTTGAATTA 59.846 34.615 13.53 1.62 45.66 1.40
7753 7991 5.046663 ACAGTTGGGTCAACAAAGTTGAATT 60.047 36.000 13.53 0.00 45.66 2.17
7798 8036 1.453155 AGGCAGCACGTTATTTCCAG 58.547 50.000 0.00 0.00 0.00 3.86
8153 8392 6.423604 CCAACAACTGAACAAAGACAAAAGTT 59.576 34.615 0.00 0.00 0.00 2.66
8275 8517 5.212532 AGCATCAGCAAACAAAAATACCA 57.787 34.783 0.00 0.00 45.49 3.25
8316 8596 2.932614 GCTCGTGTGCAGACTGAATATT 59.067 45.455 12.66 0.00 0.00 1.28
8429 8750 0.616891 GGAAACGCCTCCTTCCCTTA 59.383 55.000 0.00 0.00 35.95 2.69
8464 8912 3.078594 ACGCTTCACATCCACAAAAAC 57.921 42.857 0.00 0.00 0.00 2.43
8541 8994 0.107703 TGCCTCTCCCAATTACAGCG 60.108 55.000 0.00 0.00 0.00 5.18
8571 9024 1.407434 TACTACGACGCGTTTGGTTG 58.593 50.000 15.53 15.09 41.54 3.77
8614 9068 1.667236 CGGTTGCCATAGCTGATCAA 58.333 50.000 0.00 0.00 40.80 2.57
8635 9089 6.148948 CGTTCCAGCAAATAACAATTTCTGA 58.851 36.000 0.00 0.00 0.00 3.27
8686 9140 9.686683 AGCAACAAAAATGGATTCTACTAGTAT 57.313 29.630 2.33 0.00 0.00 2.12
8701 9155 3.269178 CCACACCACAAGCAACAAAAAT 58.731 40.909 0.00 0.00 0.00 1.82
8764 9218 7.069877 TGTAGCTCTAGGTAAACTTTTTCCA 57.930 36.000 0.00 0.00 30.84 3.53
8765 9219 7.660617 ACTTGTAGCTCTAGGTAAACTTTTTCC 59.339 37.037 0.00 0.00 0.00 3.13
8767 9221 8.975663 AACTTGTAGCTCTAGGTAAACTTTTT 57.024 30.769 0.00 0.00 0.00 1.94
8808 9262 7.453838 GTTATACACGATGAGAAAAGTGAACC 58.546 38.462 1.24 0.00 37.95 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.