Multiple sequence alignment - TraesCS7A01G316500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G316500 chr7A 100.000 3910 0 0 1717 5626 452375575 452371666 0.000000e+00 7221.0
1 TraesCS7A01G316500 chr7A 100.000 1269 0 0 1 1269 452377291 452376023 0.000000e+00 2344.0
2 TraesCS7A01G316500 chr7A 92.391 92 5 2 5002 5092 77709453 77709543 4.570000e-26 130.0
3 TraesCS7A01G316500 chr7D 95.617 3308 100 21 1717 4993 397382184 397385477 0.000000e+00 5264.0
4 TraesCS7A01G316500 chr7D 95.135 370 9 4 900 1269 397381771 397382131 4.890000e-160 575.0
5 TraesCS7A01G316500 chr7D 93.962 265 14 2 167 430 397380529 397380792 3.160000e-107 399.0
6 TraesCS7A01G316500 chr7D 92.000 150 11 1 5472 5620 612013122 612013271 5.710000e-50 209.0
7 TraesCS7A01G316500 chr7D 91.379 116 3 4 5207 5316 397385520 397385634 9.760000e-33 152.0
8 TraesCS7A01G316500 chr7D 93.684 95 5 1 55 149 397380237 397380330 2.110000e-29 141.0
9 TraesCS7A01G316500 chr7D 94.444 90 2 2 5318 5407 397386290 397386376 9.830000e-28 135.0
10 TraesCS7A01G316500 chr7B 94.393 2033 44 26 2972 4946 401136811 401138831 0.000000e+00 3059.0
11 TraesCS7A01G316500 chr7B 95.298 1276 40 6 1717 2975 401135417 401136689 0.000000e+00 2006.0
12 TraesCS7A01G316500 chr7B 81.751 811 88 40 488 1269 401134587 401135366 1.720000e-174 623.0
13 TraesCS7A01G316500 chr7B 94.964 139 4 3 5086 5222 697421857 697421994 1.230000e-51 215.0
14 TraesCS7A01G316500 chr7B 96.154 130 5 0 5093 5222 627652969 627652840 4.420000e-51 213.0
15 TraesCS7A01G316500 chr7B 88.489 139 7 4 26 158 401134002 401134137 5.830000e-35 159.0
16 TraesCS7A01G316500 chr7B 86.869 99 8 3 5002 5099 15803623 15803717 7.710000e-19 106.0
17 TraesCS7A01G316500 chr7B 76.404 178 31 8 601 772 655569800 655569628 1.000000e-12 86.1
18 TraesCS7A01G316500 chr3D 93.878 147 8 1 5474 5619 500537366 500537220 2.640000e-53 220.0
19 TraesCS7A01G316500 chr3D 92.667 150 9 2 5472 5620 300619523 300619671 1.230000e-51 215.0
20 TraesCS7A01G316500 chr4A 96.923 130 4 0 5093 5222 341775490 341775619 9.490000e-53 219.0
21 TraesCS7A01G316500 chr4A 93.333 60 4 0 5039 5098 614706407 614706348 7.760000e-14 89.8
22 TraesCS7A01G316500 chr4A 76.812 138 28 4 561 696 181705245 181705380 2.170000e-09 75.0
23 TraesCS7A01G316500 chr1B 96.899 129 4 0 5094 5222 271215818 271215946 3.410000e-52 217.0
24 TraesCS7A01G316500 chr1B 92.667 150 10 1 5472 5620 634122191 634122042 1.230000e-51 215.0
25 TraesCS7A01G316500 chr1B 95.181 83 4 0 5002 5084 675980559 675980641 1.270000e-26 132.0
26 TraesCS7A01G316500 chr1B 77.778 135 27 3 523 655 123356142 123356009 4.670000e-11 80.5
27 TraesCS7A01G316500 chr1B 75.543 184 34 9 560 740 148434260 148434435 4.670000e-11 80.5
28 TraesCS7A01G316500 chr4B 91.613 155 13 0 5472 5626 632698839 632698685 1.230000e-51 215.0
29 TraesCS7A01G316500 chr4B 92.000 150 11 1 5472 5620 167357623 167357772 5.710000e-50 209.0
30 TraesCS7A01G316500 chr2B 92.667 150 10 1 5472 5620 496088909 496089058 1.230000e-51 215.0
31 TraesCS7A01G316500 chr2B 75.543 184 42 3 528 709 374684613 374684431 2.790000e-13 87.9
32 TraesCS7A01G316500 chr2B 88.889 63 4 2 5039 5099 427249897 427249836 2.170000e-09 75.0
33 TraesCS7A01G316500 chr6B 96.154 130 5 0 5093 5222 719762137 719762266 4.420000e-51 213.0
34 TraesCS7A01G316500 chr6B 92.000 150 11 1 5472 5620 18264408 18264557 5.710000e-50 209.0
35 TraesCS7A01G316500 chr6B 94.656 131 6 1 5092 5222 265686810 265686681 9.560000e-48 202.0
36 TraesCS7A01G316500 chr1A 95.522 134 5 1 5089 5222 555209186 555209054 4.420000e-51 213.0
37 TraesCS7A01G316500 chrUn 95.385 130 6 0 5093 5222 75236159 75236288 2.050000e-49 207.0
38 TraesCS7A01G316500 chr5A 96.800 125 3 1 5098 5222 586295339 586295462 2.050000e-49 207.0
39 TraesCS7A01G316500 chr1D 92.466 146 10 1 5476 5620 447395792 447395937 2.050000e-49 207.0
40 TraesCS7A01G316500 chr3B 96.429 84 3 0 5002 5085 11070079 11069996 7.600000e-29 139.0
41 TraesCS7A01G316500 chr3B 97.531 81 2 0 5002 5082 372246377 372246297 7.600000e-29 139.0
42 TraesCS7A01G316500 chr3B 75.862 145 25 9 633 772 683592635 683592774 1.310000e-06 65.8
43 TraesCS7A01G316500 chr2A 97.531 81 2 0 5002 5082 94222111 94222191 7.600000e-29 139.0
44 TraesCS7A01G316500 chr2A 93.478 92 6 0 5002 5093 632952913 632953004 2.730000e-28 137.0
45 TraesCS7A01G316500 chr2A 95.238 84 4 0 5002 5085 699439289 699439206 3.540000e-27 134.0
46 TraesCS7A01G316500 chr2A 77.778 126 25 3 585 710 177997560 177997682 2.170000e-09 75.0
47 TraesCS7A01G316500 chr6D 97.500 80 2 0 5003 5082 196357914 196357993 2.730000e-28 137.0
48 TraesCS7A01G316500 chr2D 96.296 81 3 0 5002 5082 643235828 643235908 3.540000e-27 134.0
49 TraesCS7A01G316500 chr2D 88.776 98 9 2 5009 5105 517098617 517098521 9.900000e-23 119.0
50 TraesCS7A01G316500 chr2D 73.859 241 49 9 541 773 423465500 423465266 3.610000e-12 84.2
51 TraesCS7A01G316500 chr5D 82.474 97 11 3 5002 5098 173753625 173753715 4.670000e-11 80.5
52 TraesCS7A01G316500 chr5B 89.474 57 5 1 5042 5098 184769872 184769817 2.810000e-08 71.3
53 TraesCS7A01G316500 chr3A 95.238 42 2 0 638 679 81654985 81655026 3.640000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G316500 chr7A 452371666 452377291 5625 True 4782.50 7221 100.000000 1 5626 2 chr7A.!!$R1 5625
1 TraesCS7A01G316500 chr7D 397380237 397386376 6139 False 1111.00 5264 94.036833 55 5407 6 chr7D.!!$F2 5352
2 TraesCS7A01G316500 chr7B 401134002 401138831 4829 False 1461.75 3059 89.982750 26 4946 4 chr7B.!!$F3 4920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
461 651 0.237498 AAAAACTTAGCTCGTGCCGC 59.763 50.0 5.73 0.00 40.80 6.53 F
1149 1914 0.032267 CGAACTAGGAATCCGAGGGC 59.968 60.0 13.86 4.36 30.40 5.19 F
1766 2531 0.105778 CCAATCTCTTCCTCTCGCCC 59.894 60.0 0.00 0.00 0.00 6.13 F
2289 3055 0.742281 CAGGAAGACGTGGATGCCAG 60.742 60.0 0.00 0.00 32.34 4.85 F
2909 3692 0.378257 CCAGATCGATTTTGGCACGG 59.622 55.0 14.58 0.00 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1742 2507 0.253347 AGAGGAAGAGATTGGGGGCA 60.253 55.000 0.00 0.0 0.00 5.36 R
2533 3311 0.322975 CTTCACTGTCAGGACCAGGG 59.677 60.000 4.53 0.0 0.00 4.45 R
2909 3692 1.339727 ACCCGAGGTTTTGACCTATGC 60.340 52.381 0.00 0.0 40.86 3.14 R
4188 5144 2.205074 CTTATGGTCACTCGCCACATC 58.795 52.381 0.00 0.0 39.03 3.06 R
4679 5636 0.731417 GCGTCTAGCCGTCTACTGAA 59.269 55.000 0.00 0.0 40.81 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.299604 CGTGACTTTTATGCTTCTAAGTGTG 58.700 40.000 0.00 0.00 31.41 3.82
44 45 5.122512 TGCTTCTAAGTGTGACTAGTGAC 57.877 43.478 5.42 5.42 0.00 3.67
45 46 4.583073 TGCTTCTAAGTGTGACTAGTGACA 59.417 41.667 11.41 11.41 0.00 3.58
46 47 5.068591 TGCTTCTAAGTGTGACTAGTGACAA 59.931 40.000 17.09 0.89 0.00 3.18
52 59 2.738846 GTGTGACTAGTGACAATGCAGG 59.261 50.000 17.09 0.00 0.00 4.85
160 170 9.391006 ACATCCACATGTATATTTTCTTAACGT 57.609 29.630 0.00 0.00 41.81 3.99
211 400 8.837389 CATGTACATCTCAAGATCAATGACATT 58.163 33.333 5.07 0.00 31.21 2.71
283 472 7.775120 ACAAAATGAAATTAGGGCATAGTCAG 58.225 34.615 0.00 0.00 33.67 3.51
430 620 0.796927 GTTCAACTTAGCTCGTGCCC 59.203 55.000 5.73 0.00 40.80 5.36
431 621 0.669318 TTCAACTTAGCTCGTGCCCG 60.669 55.000 5.73 0.00 40.80 6.13
432 622 1.374252 CAACTTAGCTCGTGCCCGT 60.374 57.895 5.73 0.00 40.80 5.28
433 623 0.949105 CAACTTAGCTCGTGCCCGTT 60.949 55.000 5.73 4.51 40.80 4.44
434 624 0.250166 AACTTAGCTCGTGCCCGTTT 60.250 50.000 5.73 0.00 40.80 3.60
435 625 0.669625 ACTTAGCTCGTGCCCGTTTC 60.670 55.000 5.73 0.00 40.80 2.78
436 626 1.683790 CTTAGCTCGTGCCCGTTTCG 61.684 60.000 5.73 0.00 40.80 3.46
437 627 2.144833 TTAGCTCGTGCCCGTTTCGA 62.145 55.000 5.73 0.00 40.80 3.71
438 628 2.144833 TAGCTCGTGCCCGTTTCGAA 62.145 55.000 5.73 0.00 40.80 3.71
439 629 2.600475 GCTCGTGCCCGTTTCGAAA 61.600 57.895 6.47 6.47 33.32 3.46
440 630 1.935925 CTCGTGCCCGTTTCGAAAA 59.064 52.632 13.10 0.00 33.32 2.29
441 631 0.305313 CTCGTGCCCGTTTCGAAAAA 59.695 50.000 13.10 0.00 33.32 1.94
461 651 0.237498 AAAAACTTAGCTCGTGCCGC 59.763 50.000 5.73 0.00 40.80 6.53
479 669 3.766151 CCGCGAACTTAGTGTATCTCAA 58.234 45.455 8.23 0.00 0.00 3.02
492 682 9.802039 TTAGTGTATCTCAAATGGTTAGGTTTT 57.198 29.630 0.00 0.00 0.00 2.43
519 709 1.047801 GAAACCAATGCACCAGGGTT 58.952 50.000 4.02 4.02 45.13 4.11
548 738 1.786937 AAACTTGGCATTGGTGGTCA 58.213 45.000 0.00 0.00 0.00 4.02
549 739 1.039856 AACTTGGCATTGGTGGTCAC 58.960 50.000 0.00 0.00 0.00 3.67
555 745 2.036992 TGGCATTGGTGGTCACATTTTC 59.963 45.455 3.40 0.00 0.00 2.29
558 748 3.244181 GCATTGGTGGTCACATTTTCCTT 60.244 43.478 3.40 0.00 0.00 3.36
571 761 9.696917 GTCACATTTTCCTTGATTTATTTCAGT 57.303 29.630 0.00 0.00 0.00 3.41
573 763 9.695526 CACATTTTCCTTGATTTATTTCAGTCA 57.304 29.630 0.00 0.00 0.00 3.41
599 789 3.570926 ACGATGTGCTTCGAGTAGAAA 57.429 42.857 13.15 0.00 41.62 2.52
610 800 5.393678 GCTTCGAGTAGAAAGAGATGTTCCT 60.394 44.000 0.00 0.00 38.57 3.36
618 808 3.584406 AAGAGATGTTCCTGTCGACTG 57.416 47.619 17.92 16.32 0.00 3.51
624 814 1.140816 GTTCCTGTCGACTGTGAAGC 58.859 55.000 17.92 11.63 0.00 3.86
625 815 1.040646 TTCCTGTCGACTGTGAAGCT 58.959 50.000 17.92 0.00 0.00 3.74
658 856 6.637254 GCGACTTCGTCAATCTTAAGATGATA 59.363 38.462 18.61 4.82 42.22 2.15
675 873 3.291584 TGATATGTCGGCTGAGTCTCTT 58.708 45.455 0.00 0.00 0.00 2.85
679 877 0.820871 GTCGGCTGAGTCTCTTGGAT 59.179 55.000 0.00 0.00 0.00 3.41
680 878 2.025155 GTCGGCTGAGTCTCTTGGATA 58.975 52.381 0.00 0.00 0.00 2.59
692 890 6.565974 AGTCTCTTGGATATGCTAATAGGGA 58.434 40.000 0.00 0.00 0.00 4.20
722 920 1.352114 GTGCGTGCGTTAATAGGTGA 58.648 50.000 0.00 0.00 0.00 4.02
723 921 1.060122 GTGCGTGCGTTAATAGGTGAC 59.940 52.381 0.00 0.00 0.00 3.67
724 922 1.336980 TGCGTGCGTTAATAGGTGACA 60.337 47.619 0.00 0.00 0.00 3.58
740 942 9.764363 AATAGGTGACAAGTGTGTGTATATATG 57.236 33.333 0.00 0.00 38.41 1.78
764 966 3.424433 GCGGTTGCATCTGTAGTTGTTAC 60.424 47.826 5.52 0.00 42.15 2.50
875 1613 7.501225 AGGAAACCACATACCCGAAATATAAAG 59.499 37.037 0.00 0.00 0.00 1.85
879 1617 7.166167 ACCACATACCCGAAATATAAAGGATC 58.834 38.462 0.00 0.00 0.00 3.36
886 1624 6.431234 ACCCGAAATATAAAGGATCTCATTGC 59.569 38.462 0.00 0.00 0.00 3.56
952 1705 7.073342 ACTTATAATTCGACAGAAAGCAACC 57.927 36.000 0.00 0.00 40.15 3.77
1148 1913 1.688772 TCGAACTAGGAATCCGAGGG 58.311 55.000 13.86 3.19 30.40 4.30
1149 1914 0.032267 CGAACTAGGAATCCGAGGGC 59.968 60.000 13.86 4.36 30.40 5.19
1742 2507 2.896443 GCTCTCTGCGCCTTACCT 59.104 61.111 4.18 0.00 0.00 3.08
1766 2531 0.105778 CCAATCTCTTCCTCTCGCCC 59.894 60.000 0.00 0.00 0.00 6.13
1797 2563 1.653609 CAATGCTCGTCGATTTCGTGA 59.346 47.619 0.00 0.00 40.80 4.35
2018 2784 1.917955 CGCGAAGTCGTCATGTAATGT 59.082 47.619 0.00 0.00 42.02 2.71
2052 2818 2.615912 CGGCCATGAATCTTTCCTTCTC 59.384 50.000 2.24 0.00 0.00 2.87
2062 2828 6.149474 TGAATCTTTCCTTCTCGTTTGGATTC 59.851 38.462 0.00 0.00 37.84 2.52
2141 2907 3.847602 CTGGCTGCCGCTAGAGCT 61.848 66.667 14.98 0.00 46.60 4.09
2155 2921 1.592131 GAGCTGCGCAGATGAGGAG 60.592 63.158 40.21 13.39 36.47 3.69
2244 3010 1.903183 TGGGTATCATGACCACGTTCA 59.097 47.619 0.00 0.00 41.73 3.18
2289 3055 0.742281 CAGGAAGACGTGGATGCCAG 60.742 60.000 0.00 0.00 32.34 4.85
2374 3152 1.748493 GTGCTCTGTCTCTAGGTGAGG 59.252 57.143 0.00 0.00 42.86 3.86
2438 3216 6.128499 CGTTTTGTTATTGGACGAAGGTATGA 60.128 38.462 0.00 0.00 35.90 2.15
2442 3220 8.827177 TTGTTATTGGACGAAGGTATGATATC 57.173 34.615 0.00 0.00 0.00 1.63
2522 3300 4.757149 ACTGAGTTTTGGTGCTTACATCTC 59.243 41.667 0.00 0.00 0.00 2.75
2524 3302 3.740115 AGTTTTGGTGCTTACATCTCGT 58.260 40.909 0.00 0.00 0.00 4.18
2533 3311 3.678072 TGCTTACATCTCGTAGTGCAAAC 59.322 43.478 0.00 0.00 37.97 2.93
2737 3515 9.520204 TTTGAAGATTCAGATGTTTCTTTCAAC 57.480 29.630 0.00 0.00 35.21 3.18
2845 3628 2.287909 TGTTGCTGGTAAATGTTTCGCC 60.288 45.455 0.00 0.00 0.00 5.54
2909 3692 0.378257 CCAGATCGATTTTGGCACGG 59.622 55.000 14.58 0.00 0.00 4.94
3150 4059 8.135529 CGATAGTGGAAGTTAGTCATGTTATGA 58.864 37.037 0.00 0.00 36.84 2.15
3826 4738 8.174733 TGCTTTACAGTACTAAGTAGTTGAGT 57.825 34.615 0.00 0.00 37.73 3.41
3827 4739 8.636213 TGCTTTACAGTACTAAGTAGTTGAGTT 58.364 33.333 0.00 0.00 37.73 3.01
3901 4835 7.254966 CCAACTACAGTGTTTGTTAGCACATAA 60.255 37.037 0.00 0.00 41.29 1.90
3985 4919 2.689553 ACATGTCGGCACATCACATA 57.310 45.000 0.00 0.00 41.69 2.29
3987 4921 2.938451 ACATGTCGGCACATCACATAAG 59.062 45.455 0.00 0.00 41.69 1.73
4071 5027 6.871844 TGAATGACCTCAGAATAAGACAGAG 58.128 40.000 0.00 0.00 0.00 3.35
4109 5065 3.009723 CGCAAATCTAGTGGGTGTTGAT 58.990 45.455 0.00 0.00 0.00 2.57
4139 5095 7.504238 TCTTCTCTCTCAGTTACTCTTTTGTCT 59.496 37.037 0.00 0.00 0.00 3.41
4188 5144 4.433615 ACACATGGCTCTATCTTTGTACG 58.566 43.478 0.00 0.00 0.00 3.67
4195 5151 3.491267 GCTCTATCTTTGTACGATGTGGC 59.509 47.826 0.00 0.00 0.00 5.01
4629 5586 0.601311 AGCGCAGGAGTCTTGACAAC 60.601 55.000 11.47 0.00 0.00 3.32
4676 5633 5.297776 GCTGCTCCATGTAAACTCATGTAAT 59.702 40.000 0.00 0.00 42.29 1.89
4678 5635 7.012327 GCTGCTCCATGTAAACTCATGTAATTA 59.988 37.037 0.00 0.00 42.29 1.40
4679 5636 8.978874 TGCTCCATGTAAACTCATGTAATTAT 57.021 30.769 0.00 0.00 42.29 1.28
4681 5638 9.884465 GCTCCATGTAAACTCATGTAATTATTC 57.116 33.333 0.00 0.00 42.29 1.75
4690 5647 8.873215 AACTCATGTAATTATTCAGTAGACGG 57.127 34.615 0.00 0.00 0.00 4.79
4691 5648 6.924060 ACTCATGTAATTATTCAGTAGACGGC 59.076 38.462 0.00 0.00 0.00 5.68
4722 5679 3.914605 TAGCAGCTGTCGTGCCGTG 62.915 63.158 16.64 0.00 42.24 4.94
4761 5718 3.810310 ACAAATTTTTGCCTTCCGACA 57.190 38.095 3.00 0.00 41.79 4.35
4883 5844 3.005155 GGAAAGCTCTGCAAATTGTGTCT 59.995 43.478 0.00 0.00 0.00 3.41
4899 5864 7.943079 ATTGTGTCTGTCATGATTAAATGGA 57.057 32.000 0.00 0.00 0.00 3.41
4954 5920 5.125100 TGAATTCTCAATGTGGCTGTTTC 57.875 39.130 7.05 0.00 0.00 2.78
4974 5940 4.178545 TCTTCCTTTGCTATTTTGCAGC 57.821 40.909 0.00 0.00 44.27 5.25
4993 5959 2.159254 AGCGCGCATTTTGGAAATGTAT 60.159 40.909 35.10 2.61 0.00 2.29
4994 5960 2.602660 GCGCGCATTTTGGAAATGTATT 59.397 40.909 29.10 0.00 0.00 1.89
4995 5961 3.541903 GCGCGCATTTTGGAAATGTATTG 60.542 43.478 29.10 4.78 0.00 1.90
4996 5962 3.541903 CGCGCATTTTGGAAATGTATTGC 60.542 43.478 8.75 11.18 0.00 3.56
4998 5964 4.142945 GCGCATTTTGGAAATGTATTGCAA 60.143 37.500 0.30 0.00 0.00 4.08
4999 5965 5.616424 GCGCATTTTGGAAATGTATTGCAAA 60.616 36.000 1.71 4.12 37.83 3.68
5000 5966 6.016718 CGCATTTTGGAAATGTATTGCAAAG 58.983 36.000 1.71 0.77 40.02 2.77
5001 5967 5.796437 GCATTTTGGAAATGTATTGCAAAGC 59.204 36.000 1.71 0.00 40.02 3.51
5002 5968 5.938438 TTTTGGAAATGTATTGCAAAGCC 57.062 34.783 1.71 0.00 40.02 4.35
5003 5969 3.608316 TGGAAATGTATTGCAAAGCCC 57.392 42.857 1.71 0.00 0.00 5.19
5004 5970 3.172339 TGGAAATGTATTGCAAAGCCCT 58.828 40.909 1.71 0.00 0.00 5.19
5005 5971 3.195396 TGGAAATGTATTGCAAAGCCCTC 59.805 43.478 1.71 0.00 0.00 4.30
5006 5972 3.430790 GGAAATGTATTGCAAAGCCCTCC 60.431 47.826 1.71 2.12 0.00 4.30
5007 5973 2.530460 ATGTATTGCAAAGCCCTCCA 57.470 45.000 1.71 0.00 0.00 3.86
5008 5974 2.530460 TGTATTGCAAAGCCCTCCAT 57.470 45.000 1.71 0.00 0.00 3.41
5010 5976 3.974719 TGTATTGCAAAGCCCTCCATAA 58.025 40.909 1.71 0.00 0.00 1.90
5011 5977 4.348486 TGTATTGCAAAGCCCTCCATAAA 58.652 39.130 1.71 0.00 0.00 1.40
5012 5978 4.402155 TGTATTGCAAAGCCCTCCATAAAG 59.598 41.667 1.71 0.00 0.00 1.85
5014 5980 3.168035 TGCAAAGCCCTCCATAAAGAA 57.832 42.857 0.00 0.00 0.00 2.52
5015 5981 3.505386 TGCAAAGCCCTCCATAAAGAAA 58.495 40.909 0.00 0.00 0.00 2.52
5018 5984 5.898972 TGCAAAGCCCTCCATAAAGAAATAT 59.101 36.000 0.00 0.00 0.00 1.28
5019 5985 7.066142 TGCAAAGCCCTCCATAAAGAAATATA 58.934 34.615 0.00 0.00 0.00 0.86
5020 5986 7.563188 TGCAAAGCCCTCCATAAAGAAATATAA 59.437 33.333 0.00 0.00 0.00 0.98
5022 5988 9.354673 CAAAGCCCTCCATAAAGAAATATAAGA 57.645 33.333 0.00 0.00 0.00 2.10
5023 5989 9.579932 AAAGCCCTCCATAAAGAAATATAAGAG 57.420 33.333 0.00 0.00 0.00 2.85
5024 5990 7.171653 AGCCCTCCATAAAGAAATATAAGAGC 58.828 38.462 0.00 0.00 0.00 4.09
5025 5991 6.942576 GCCCTCCATAAAGAAATATAAGAGCA 59.057 38.462 0.00 0.00 0.00 4.26
5026 5992 7.613411 GCCCTCCATAAAGAAATATAAGAGCAT 59.387 37.037 0.00 0.00 0.00 3.79
5027 5993 9.525826 CCCTCCATAAAGAAATATAAGAGCATT 57.474 33.333 0.00 0.00 0.00 3.56
5045 6011 9.593134 AAGAGCATTTAGATTACTGAAGTAGTG 57.407 33.333 0.00 0.00 40.65 2.74
5046 6012 8.972127 AGAGCATTTAGATTACTGAAGTAGTGA 58.028 33.333 0.00 0.00 40.65 3.41
5047 6013 9.757227 GAGCATTTAGATTACTGAAGTAGTGAT 57.243 33.333 0.00 0.00 40.65 3.06
5055 6021 7.988904 ATTACTGAAGTAGTGATCTAAACGC 57.011 36.000 0.00 0.00 40.65 4.84
5056 6022 5.646577 ACTGAAGTAGTGATCTAAACGCT 57.353 39.130 0.00 0.00 38.49 5.07
5057 6023 5.642686 ACTGAAGTAGTGATCTAAACGCTC 58.357 41.667 0.00 0.00 38.49 5.03
5058 6024 5.416326 ACTGAAGTAGTGATCTAAACGCTCT 59.584 40.000 0.00 0.00 38.49 4.09
5059 6025 6.071840 ACTGAAGTAGTGATCTAAACGCTCTT 60.072 38.462 0.00 0.00 38.49 2.85
5060 6026 7.120873 ACTGAAGTAGTGATCTAAACGCTCTTA 59.879 37.037 0.00 0.00 38.49 2.10
5061 6027 7.997482 TGAAGTAGTGATCTAAACGCTCTTAT 58.003 34.615 0.00 0.00 0.00 1.73
5062 6028 9.117183 TGAAGTAGTGATCTAAACGCTCTTATA 57.883 33.333 0.00 0.00 0.00 0.98
5076 6042 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
5077 6043 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
5092 6058 4.587891 ACAGAGGGAGTAGTACTGTACAC 58.412 47.826 19.27 14.30 39.52 2.90
5093 6059 4.042560 ACAGAGGGAGTAGTACTGTACACA 59.957 45.833 19.27 4.64 39.52 3.72
5103 6069 2.153913 CTGTACACAGTGGCGAAGC 58.846 57.895 5.31 0.00 46.23 3.86
5115 6081 4.928398 CGAAGCCACTCATCAGCT 57.072 55.556 0.00 0.00 38.88 4.24
5116 6082 2.381109 CGAAGCCACTCATCAGCTG 58.619 57.895 7.63 7.63 36.84 4.24
5117 6083 1.088340 CGAAGCCACTCATCAGCTGG 61.088 60.000 15.13 0.00 36.84 4.85
5118 6084 0.747283 GAAGCCACTCATCAGCTGGG 60.747 60.000 15.13 6.99 36.84 4.45
5119 6085 1.495579 AAGCCACTCATCAGCTGGGT 61.496 55.000 15.13 5.36 40.02 4.51
5120 6086 0.618680 AGCCACTCATCAGCTGGGTA 60.619 55.000 15.13 0.00 35.97 3.69
5121 6087 0.179062 GCCACTCATCAGCTGGGTAG 60.179 60.000 15.13 10.88 35.97 3.18
5122 6088 1.198713 CCACTCATCAGCTGGGTAGT 58.801 55.000 15.13 11.53 35.97 2.73
5123 6089 1.137872 CCACTCATCAGCTGGGTAGTC 59.862 57.143 15.13 0.00 35.97 2.59
5124 6090 1.827344 CACTCATCAGCTGGGTAGTCA 59.173 52.381 15.13 0.00 35.97 3.41
5125 6091 2.234661 CACTCATCAGCTGGGTAGTCAA 59.765 50.000 15.13 0.00 35.97 3.18
5126 6092 3.110705 ACTCATCAGCTGGGTAGTCAAT 58.889 45.455 15.13 0.00 36.55 2.57
5127 6093 3.521126 ACTCATCAGCTGGGTAGTCAATT 59.479 43.478 15.13 0.00 36.55 2.32
5128 6094 3.875727 CTCATCAGCTGGGTAGTCAATTG 59.124 47.826 15.13 0.00 0.00 2.32
5129 6095 3.519107 TCATCAGCTGGGTAGTCAATTGA 59.481 43.478 15.13 3.38 0.00 2.57
5130 6096 3.334583 TCAGCTGGGTAGTCAATTGAC 57.665 47.619 27.69 27.69 45.08 3.18
5143 6109 5.453567 GTCAATTGACTACCCAGCTTTTT 57.546 39.130 27.66 0.00 41.65 1.94
5144 6110 5.222631 GTCAATTGACTACCCAGCTTTTTG 58.777 41.667 27.66 0.00 41.65 2.44
5145 6111 5.009610 GTCAATTGACTACCCAGCTTTTTGA 59.990 40.000 27.66 0.00 41.65 2.69
5146 6112 5.774690 TCAATTGACTACCCAGCTTTTTGAT 59.225 36.000 3.38 0.00 0.00 2.57
5147 6113 5.649782 ATTGACTACCCAGCTTTTTGATG 57.350 39.130 0.00 0.00 0.00 3.07
5148 6114 4.365514 TGACTACCCAGCTTTTTGATGA 57.634 40.909 0.00 0.00 33.12 2.92
5149 6115 4.724399 TGACTACCCAGCTTTTTGATGAA 58.276 39.130 0.00 0.00 33.12 2.57
5150 6116 5.136828 TGACTACCCAGCTTTTTGATGAAA 58.863 37.500 0.00 0.00 33.12 2.69
5151 6117 5.009610 TGACTACCCAGCTTTTTGATGAAAC 59.990 40.000 0.00 0.00 33.12 2.78
5152 6118 5.140454 ACTACCCAGCTTTTTGATGAAACT 58.860 37.500 0.00 0.00 33.12 2.66
5153 6119 6.303839 ACTACCCAGCTTTTTGATGAAACTA 58.696 36.000 0.00 0.00 33.12 2.24
5154 6120 5.712152 ACCCAGCTTTTTGATGAAACTAG 57.288 39.130 0.00 0.00 33.12 2.57
5155 6121 4.021981 ACCCAGCTTTTTGATGAAACTAGC 60.022 41.667 3.64 3.64 33.12 3.42
5156 6122 4.022068 CCCAGCTTTTTGATGAAACTAGCA 60.022 41.667 11.65 0.00 33.97 3.49
5157 6123 5.337009 CCCAGCTTTTTGATGAAACTAGCAT 60.337 40.000 11.65 0.00 33.97 3.79
5158 6124 6.127647 CCCAGCTTTTTGATGAAACTAGCATA 60.128 38.462 11.65 0.00 33.97 3.14
5159 6125 7.417116 CCCAGCTTTTTGATGAAACTAGCATAT 60.417 37.037 11.65 0.00 33.97 1.78
5160 6126 7.434307 CCAGCTTTTTGATGAAACTAGCATATG 59.566 37.037 11.65 0.00 33.97 1.78
5161 6127 6.976925 AGCTTTTTGATGAAACTAGCATATGC 59.023 34.615 20.36 20.36 42.49 3.14
5162 6128 6.753279 GCTTTTTGATGAAACTAGCATATGCA 59.247 34.615 28.62 13.96 45.16 3.96
5163 6129 7.437267 GCTTTTTGATGAAACTAGCATATGCAT 59.563 33.333 28.62 16.04 45.16 3.96
5164 6130 8.637281 TTTTTGATGAAACTAGCATATGCATG 57.363 30.769 28.62 21.31 45.16 4.06
5179 6145 7.477144 CATATGCATGCAGAAATGTTGAATT 57.523 32.000 26.69 6.68 0.00 2.17
5180 6146 7.915508 CATATGCATGCAGAAATGTTGAATTT 58.084 30.769 26.69 6.21 0.00 1.82
5181 6147 6.811253 ATGCATGCAGAAATGTTGAATTTT 57.189 29.167 26.69 0.00 0.00 1.82
5182 6148 6.621316 TGCATGCAGAAATGTTGAATTTTT 57.379 29.167 18.46 0.00 0.00 1.94
5242 6208 4.760530 TCCATATTGTCCAGGAAGAGTG 57.239 45.455 0.00 0.00 0.00 3.51
5262 6228 0.680618 CATGGCTTGGCAAAGGACAA 59.319 50.000 2.26 0.00 40.58 3.18
5303 6269 2.901975 AGCGGATCTGGCTCTGTTA 58.098 52.632 3.14 0.00 35.37 2.41
5310 6276 3.489398 GGATCTGGCTCTGTTACACGTAG 60.489 52.174 0.00 0.00 0.00 3.51
5316 6282 4.271533 TGGCTCTGTTACACGTAGTTTTTG 59.728 41.667 0.00 0.00 41.61 2.44
5329 6949 7.013529 CACGTAGTTTTTGCTAATAGGTTCAC 58.986 38.462 0.00 0.00 41.61 3.18
5338 6958 0.814010 AATAGGTTCACGATGCGGGC 60.814 55.000 0.00 0.00 0.00 6.13
5353 6973 2.674380 GGCCTGGCTTGGACACAG 60.674 66.667 19.68 0.00 34.56 3.66
5355 6975 2.839098 CCTGGCTTGGACACAGGT 59.161 61.111 0.00 0.00 45.21 4.00
5356 6976 2.066340 CCTGGCTTGGACACAGGTA 58.934 57.895 0.00 0.00 45.21 3.08
5407 7027 5.980116 TGCGAAGATAGAGTATGAAAAGAGC 59.020 40.000 0.00 0.00 0.00 4.09
5408 7028 5.116377 GCGAAGATAGAGTATGAAAAGAGCG 59.884 44.000 0.00 0.00 0.00 5.03
5409 7029 6.202937 CGAAGATAGAGTATGAAAAGAGCGT 58.797 40.000 0.00 0.00 0.00 5.07
5410 7030 7.353497 CGAAGATAGAGTATGAAAAGAGCGTA 58.647 38.462 0.00 0.00 0.00 4.42
5411 7031 7.856398 CGAAGATAGAGTATGAAAAGAGCGTAA 59.144 37.037 0.00 0.00 0.00 3.18
5412 7032 8.859517 AAGATAGAGTATGAAAAGAGCGTAAC 57.140 34.615 0.00 0.00 0.00 2.50
5413 7033 7.997482 AGATAGAGTATGAAAAGAGCGTAACA 58.003 34.615 0.00 0.00 0.00 2.41
5414 7034 8.132362 AGATAGAGTATGAAAAGAGCGTAACAG 58.868 37.037 0.00 0.00 0.00 3.16
5415 7035 4.865365 AGAGTATGAAAAGAGCGTAACAGC 59.135 41.667 0.00 0.00 37.41 4.40
5416 7036 4.566004 AGTATGAAAAGAGCGTAACAGCA 58.434 39.130 0.00 0.00 40.15 4.41
5417 7037 4.994852 AGTATGAAAAGAGCGTAACAGCAA 59.005 37.500 0.00 0.00 40.15 3.91
5418 7038 3.602390 TGAAAAGAGCGTAACAGCAAC 57.398 42.857 0.00 0.00 40.15 4.17
5419 7039 3.202906 TGAAAAGAGCGTAACAGCAACT 58.797 40.909 0.00 0.00 40.15 3.16
5420 7040 3.247648 TGAAAAGAGCGTAACAGCAACTC 59.752 43.478 0.00 0.00 40.15 3.01
5421 7041 2.821991 AAGAGCGTAACAGCAACTCT 57.178 45.000 0.00 0.00 39.34 3.24
5422 7042 3.936372 AAGAGCGTAACAGCAACTCTA 57.064 42.857 0.00 0.00 36.72 2.43
5423 7043 3.495670 AGAGCGTAACAGCAACTCTAG 57.504 47.619 0.00 0.00 35.99 2.43
5424 7044 1.921230 GAGCGTAACAGCAACTCTAGC 59.079 52.381 0.00 0.00 40.15 3.42
5425 7045 1.546476 AGCGTAACAGCAACTCTAGCT 59.454 47.619 0.00 0.00 44.62 3.32
5426 7046 2.028930 AGCGTAACAGCAACTCTAGCTT 60.029 45.455 0.00 0.00 41.14 3.74
5427 7047 3.192844 AGCGTAACAGCAACTCTAGCTTA 59.807 43.478 0.00 0.00 41.14 3.09
5428 7048 3.303760 GCGTAACAGCAACTCTAGCTTAC 59.696 47.826 0.00 0.00 41.14 2.34
5429 7049 4.734917 CGTAACAGCAACTCTAGCTTACT 58.265 43.478 0.00 0.00 41.14 2.24
5430 7050 5.675575 GCGTAACAGCAACTCTAGCTTACTA 60.676 44.000 0.00 0.00 41.14 1.82
5431 7051 5.738225 CGTAACAGCAACTCTAGCTTACTAC 59.262 44.000 0.00 0.00 41.14 2.73
5432 7052 5.723672 AACAGCAACTCTAGCTTACTACA 57.276 39.130 0.00 0.00 41.14 2.74
5433 7053 5.923733 ACAGCAACTCTAGCTTACTACAT 57.076 39.130 0.00 0.00 41.14 2.29
5434 7054 5.897050 ACAGCAACTCTAGCTTACTACATC 58.103 41.667 0.00 0.00 41.14 3.06
5435 7055 5.163499 ACAGCAACTCTAGCTTACTACATCC 60.163 44.000 0.00 0.00 41.14 3.51
5436 7056 4.342665 AGCAACTCTAGCTTACTACATCCC 59.657 45.833 0.00 0.00 39.87 3.85
5437 7057 4.793353 GCAACTCTAGCTTACTACATCCCG 60.793 50.000 0.00 0.00 0.00 5.14
5438 7058 4.167652 ACTCTAGCTTACTACATCCCGT 57.832 45.455 0.00 0.00 0.00 5.28
5439 7059 5.301835 ACTCTAGCTTACTACATCCCGTA 57.698 43.478 0.00 0.00 0.00 4.02
5440 7060 5.688807 ACTCTAGCTTACTACATCCCGTAA 58.311 41.667 0.00 0.00 0.00 3.18
5441 7061 6.125029 ACTCTAGCTTACTACATCCCGTAAA 58.875 40.000 0.00 0.00 0.00 2.01
5442 7062 6.604795 ACTCTAGCTTACTACATCCCGTAAAA 59.395 38.462 0.00 0.00 0.00 1.52
5443 7063 7.123247 ACTCTAGCTTACTACATCCCGTAAAAA 59.877 37.037 0.00 0.00 0.00 1.94
5463 7083 5.593679 AAAAATGAGGCTCCATCATGAAG 57.406 39.130 12.86 0.00 37.46 3.02
5464 7084 4.515028 AAATGAGGCTCCATCATGAAGA 57.485 40.909 12.86 0.00 37.46 2.87
5465 7085 3.773418 ATGAGGCTCCATCATGAAGAG 57.227 47.619 12.86 17.65 36.07 2.85
5471 7091 3.694535 CTCCATCATGAAGAGCAAAGC 57.305 47.619 11.85 0.00 0.00 3.51
5472 7092 2.358267 CTCCATCATGAAGAGCAAAGCC 59.642 50.000 11.85 0.00 0.00 4.35
5473 7093 1.065102 CCATCATGAAGAGCAAAGCCG 59.935 52.381 0.00 0.00 0.00 5.52
5474 7094 0.737219 ATCATGAAGAGCAAAGCCGC 59.263 50.000 0.00 0.00 0.00 6.53
5475 7095 1.226211 CATGAAGAGCAAAGCCGCG 60.226 57.895 0.00 0.00 36.85 6.46
5476 7096 1.672356 ATGAAGAGCAAAGCCGCGT 60.672 52.632 4.92 0.00 36.85 6.01
5477 7097 1.639298 ATGAAGAGCAAAGCCGCGTC 61.639 55.000 4.92 0.00 36.85 5.19
5478 7098 3.354499 GAAGAGCAAAGCCGCGTCG 62.354 63.158 4.92 0.00 36.85 5.12
5530 7150 4.176752 GCCGCTAGGTCCCCCTTG 62.177 72.222 0.00 0.00 42.66 3.61
5534 7154 3.097162 CTAGGTCCCCCTTGCCCC 61.097 72.222 0.00 0.00 42.66 5.80
5535 7155 4.771745 TAGGTCCCCCTTGCCCCC 62.772 72.222 0.00 0.00 42.66 5.40
5596 7216 4.814294 CGCGCGCTTAGGGAAGGT 62.814 66.667 30.48 0.00 32.84 3.50
5597 7217 3.195698 GCGCGCTTAGGGAAGGTG 61.196 66.667 26.67 0.00 32.84 4.00
5598 7218 2.511600 CGCGCTTAGGGAAGGTGG 60.512 66.667 5.56 0.00 32.84 4.61
5599 7219 2.669240 GCGCTTAGGGAAGGTGGT 59.331 61.111 0.00 0.00 32.84 4.16
5600 7220 1.745489 GCGCTTAGGGAAGGTGGTG 60.745 63.158 0.00 0.00 32.84 4.17
5601 7221 1.078426 CGCTTAGGGAAGGTGGTGG 60.078 63.158 0.00 0.00 32.84 4.61
5602 7222 1.378646 GCTTAGGGAAGGTGGTGGC 60.379 63.158 0.00 0.00 32.84 5.01
5603 7223 1.078426 CTTAGGGAAGGTGGTGGCG 60.078 63.158 0.00 0.00 0.00 5.69
5604 7224 2.536997 CTTAGGGAAGGTGGTGGCGG 62.537 65.000 0.00 0.00 0.00 6.13
5622 7242 3.069778 GGCGTTTCCCCTCTCTGT 58.930 61.111 0.00 0.00 0.00 3.41
5623 7243 1.376037 GGCGTTTCCCCTCTCTGTG 60.376 63.158 0.00 0.00 0.00 3.66
5624 7244 1.376037 GCGTTTCCCCTCTCTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
5625 7245 1.376037 CGTTTCCCCTCTCTGTGGC 60.376 63.158 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.584185 AGCATAAAAGTCACGGGTATTTTT 57.416 33.333 7.66 5.24 0.00 1.94
3 4 6.433093 AGAAGCATAAAAGTCACGGGTATTTT 59.567 34.615 7.53 7.53 0.00 1.82
4 5 5.944007 AGAAGCATAAAAGTCACGGGTATTT 59.056 36.000 0.00 0.00 0.00 1.40
5 6 5.497474 AGAAGCATAAAAGTCACGGGTATT 58.503 37.500 0.00 0.00 0.00 1.89
6 7 5.099042 AGAAGCATAAAAGTCACGGGTAT 57.901 39.130 0.00 0.00 0.00 2.73
7 8 4.546829 AGAAGCATAAAAGTCACGGGTA 57.453 40.909 0.00 0.00 0.00 3.69
8 9 3.418684 AGAAGCATAAAAGTCACGGGT 57.581 42.857 0.00 0.00 0.00 5.28
9 10 4.935808 ACTTAGAAGCATAAAAGTCACGGG 59.064 41.667 0.00 0.00 0.00 5.28
10 11 5.408604 ACACTTAGAAGCATAAAAGTCACGG 59.591 40.000 0.00 0.00 29.93 4.94
11 12 6.145534 TCACACTTAGAAGCATAAAAGTCACG 59.854 38.462 0.00 0.00 29.93 4.35
12 13 7.171678 AGTCACACTTAGAAGCATAAAAGTCAC 59.828 37.037 0.00 0.00 29.93 3.67
13 14 7.217200 AGTCACACTTAGAAGCATAAAAGTCA 58.783 34.615 0.00 0.00 29.93 3.41
14 15 7.659652 AGTCACACTTAGAAGCATAAAAGTC 57.340 36.000 0.00 0.00 29.93 3.01
15 16 8.368668 ACTAGTCACACTTAGAAGCATAAAAGT 58.631 33.333 0.00 0.00 32.52 2.66
16 17 8.651588 CACTAGTCACACTTAGAAGCATAAAAG 58.348 37.037 0.00 0.00 0.00 2.27
17 18 8.364894 TCACTAGTCACACTTAGAAGCATAAAA 58.635 33.333 0.00 0.00 0.00 1.52
18 19 7.813148 GTCACTAGTCACACTTAGAAGCATAAA 59.187 37.037 0.00 0.00 0.00 1.40
19 20 7.039993 TGTCACTAGTCACACTTAGAAGCATAA 60.040 37.037 0.00 0.00 0.00 1.90
20 21 6.433093 TGTCACTAGTCACACTTAGAAGCATA 59.567 38.462 0.00 0.00 0.00 3.14
21 22 5.243954 TGTCACTAGTCACACTTAGAAGCAT 59.756 40.000 0.00 0.00 0.00 3.79
22 23 4.583073 TGTCACTAGTCACACTTAGAAGCA 59.417 41.667 0.00 0.00 0.00 3.91
23 24 5.122512 TGTCACTAGTCACACTTAGAAGC 57.877 43.478 0.00 0.00 0.00 3.86
24 25 6.090088 GCATTGTCACTAGTCACACTTAGAAG 59.910 42.308 0.00 0.00 0.00 2.85
35 36 1.373570 GCCCTGCATTGTCACTAGTC 58.626 55.000 0.00 0.00 0.00 2.59
44 45 1.832998 AGTAAAATGGGCCCTGCATTG 59.167 47.619 25.70 0.00 0.00 2.82
45 46 2.252535 AGTAAAATGGGCCCTGCATT 57.747 45.000 25.70 12.07 0.00 3.56
46 47 3.031013 GTTAGTAAAATGGGCCCTGCAT 58.969 45.455 25.70 5.04 0.00 3.96
387 577 5.923733 ACTCTTGATTTGACTCGTCCTAT 57.076 39.130 0.00 0.00 0.00 2.57
394 584 7.954788 AGTTGAACTACTCTTGATTTGACTC 57.045 36.000 0.00 0.00 0.00 3.36
455 645 1.587034 GATACACTAAGTTCGCGGCAC 59.413 52.381 6.13 3.36 0.00 5.01
456 646 1.475280 AGATACACTAAGTTCGCGGCA 59.525 47.619 6.13 0.00 0.00 5.69
457 647 2.117910 GAGATACACTAAGTTCGCGGC 58.882 52.381 6.13 0.00 0.00 6.53
458 648 3.416119 TGAGATACACTAAGTTCGCGG 57.584 47.619 6.13 0.00 0.00 6.46
459 649 5.276395 CCATTTGAGATACACTAAGTTCGCG 60.276 44.000 0.00 0.00 0.00 5.87
460 650 5.581085 ACCATTTGAGATACACTAAGTTCGC 59.419 40.000 0.00 0.00 0.00 4.70
461 651 7.596749 AACCATTTGAGATACACTAAGTTCG 57.403 36.000 0.00 0.00 0.00 3.95
467 657 9.802039 AAAAACCTAACCATTTGAGATACACTA 57.198 29.630 0.00 0.00 0.00 2.74
519 709 3.806949 ATGCCAAGTTTAGGACTTCCA 57.193 42.857 0.00 0.00 45.40 3.53
526 716 2.231235 GACCACCAATGCCAAGTTTAGG 59.769 50.000 0.00 0.00 0.00 2.69
555 745 8.853345 CGTTGAAATGACTGAAATAAATCAAGG 58.147 33.333 0.00 0.00 0.00 3.61
558 748 9.558648 CATCGTTGAAATGACTGAAATAAATCA 57.441 29.630 0.00 0.00 0.00 2.57
571 761 3.063485 TCGAAGCACATCGTTGAAATGA 58.937 40.909 0.00 0.00 43.19 2.57
573 763 3.067106 ACTCGAAGCACATCGTTGAAAT 58.933 40.909 0.00 0.00 43.19 2.17
599 789 2.230025 CACAGTCGACAGGAACATCTCT 59.770 50.000 19.50 0.00 0.00 3.10
610 800 1.032794 AGACAGCTTCACAGTCGACA 58.967 50.000 19.50 0.00 39.64 4.35
618 808 3.782244 CGCCGCAGACAGCTTCAC 61.782 66.667 0.00 0.00 42.61 3.18
624 814 3.175240 CGAAGTCGCCGCAGACAG 61.175 66.667 14.76 5.26 43.24 3.51
625 815 3.973516 ACGAAGTCGCCGCAGACA 61.974 61.111 14.76 0.00 43.24 3.41
658 856 0.534412 CCAAGAGACTCAGCCGACAT 59.466 55.000 5.02 0.00 0.00 3.06
675 873 6.118042 ACCCTATCCCTATTAGCATATCCA 57.882 41.667 0.00 0.00 0.00 3.41
679 877 7.722728 CACGTATACCCTATCCCTATTAGCATA 59.277 40.741 0.00 0.00 0.00 3.14
680 878 6.550108 CACGTATACCCTATCCCTATTAGCAT 59.450 42.308 0.00 0.00 0.00 3.79
692 890 0.039798 CGCACGCACGTATACCCTAT 60.040 55.000 0.00 0.00 0.00 2.57
722 920 5.163447 ACCGCTCATATATACACACACTTGT 60.163 40.000 0.00 0.00 35.84 3.16
723 921 5.289595 ACCGCTCATATATACACACACTTG 58.710 41.667 0.00 0.00 0.00 3.16
724 922 5.531122 ACCGCTCATATATACACACACTT 57.469 39.130 0.00 0.00 0.00 3.16
740 942 1.394917 CAACTACAGATGCAACCGCTC 59.605 52.381 0.00 0.00 39.64 5.03
777 979 5.366477 TCTCTACCAATATGAGTGGCATGAA 59.634 40.000 0.00 0.00 40.02 2.57
780 982 7.401204 TCATATCTCTACCAATATGAGTGGCAT 59.599 37.037 0.00 0.00 39.03 4.40
830 1032 7.860872 GGTTTCCTATACTTGTTGAAACAACTG 59.139 37.037 14.19 10.03 43.99 3.16
842 1044 5.054477 CGGGTATGTGGTTTCCTATACTTG 58.946 45.833 0.00 0.00 30.72 3.16
851 1053 7.499895 TCCTTTATATTTCGGGTATGTGGTTTC 59.500 37.037 0.00 0.00 0.00 2.78
936 1689 2.325583 ACTGGTTGCTTTCTGTCGAA 57.674 45.000 0.00 0.00 0.00 3.71
952 1705 1.461127 GAGCTTGCGGAAAGTGTACTG 59.539 52.381 0.00 0.00 38.25 2.74
1149 1914 4.741781 CGCTTTTGCCCGTGCTCG 62.742 66.667 0.14 0.14 43.93 5.03
1734 2499 1.455773 GATTGGGGGCAGGTAAGGC 60.456 63.158 0.00 0.00 0.00 4.35
1742 2507 0.253347 AGAGGAAGAGATTGGGGGCA 60.253 55.000 0.00 0.00 0.00 5.36
1766 2531 2.124819 AGCATTGGAGCAGCTCGG 60.125 61.111 16.47 6.95 32.05 4.63
1797 2563 2.803817 AAACGTCACCACCTCCGCT 61.804 57.895 0.00 0.00 0.00 5.52
1863 2629 1.062525 CGGCGCATTACCTTGCTTC 59.937 57.895 10.83 0.00 40.54 3.86
2018 2784 1.841302 ATGGCCGCTCAAGGTTCAGA 61.841 55.000 0.00 0.00 0.00 3.27
2052 2818 3.063997 AGCAGAATAAGCGAATCCAAACG 59.936 43.478 0.00 0.00 37.01 3.60
2062 2828 3.751621 CCAAACAGAAGCAGAATAAGCG 58.248 45.455 0.00 0.00 37.01 4.68
2141 2907 2.864378 CTTGGCTCCTCATCTGCGCA 62.864 60.000 10.98 10.98 0.00 6.09
2244 3010 1.040646 TCTCTGCGCCTCCGATTATT 58.959 50.000 4.18 0.00 36.29 1.40
2374 3152 0.889186 TTCTCCAGCCTTCGCAAACC 60.889 55.000 0.00 0.00 37.52 3.27
2438 3216 7.054124 TCCCAGATTTTTAAACTCAGCGATAT 58.946 34.615 0.00 0.00 0.00 1.63
2442 3220 5.371115 TTCCCAGATTTTTAAACTCAGCG 57.629 39.130 0.00 0.00 0.00 5.18
2472 3250 4.935885 GTCAAGCAGGAACATTGACTAG 57.064 45.455 9.43 0.00 45.91 2.57
2522 3300 0.953960 GGACCAGGGTTTGCACTACG 60.954 60.000 0.00 0.00 0.00 3.51
2524 3302 0.400213 CAGGACCAGGGTTTGCACTA 59.600 55.000 0.00 0.00 0.00 2.74
2533 3311 0.322975 CTTCACTGTCAGGACCAGGG 59.677 60.000 4.53 0.00 0.00 4.45
2737 3515 2.047844 CCCACGTGGACAGAGCAG 60.048 66.667 36.07 12.56 37.39 4.24
2801 3579 1.472728 GGGTTCTGTGTAGGCATACCG 60.473 57.143 6.00 0.00 42.76 4.02
2909 3692 1.339727 ACCCGAGGTTTTGACCTATGC 60.340 52.381 0.00 0.00 40.86 3.14
3247 4157 6.384342 TCTCTAGTAAGACCTGTCCTTGTA 57.616 41.667 0.00 0.00 0.00 2.41
3248 4158 5.258216 TCTCTAGTAAGACCTGTCCTTGT 57.742 43.478 0.00 0.00 0.00 3.16
3249 4159 5.451242 GCATCTCTAGTAAGACCTGTCCTTG 60.451 48.000 0.00 0.00 0.00 3.61
3335 4245 5.653769 ACTGTGAACATTAAGCAGGCATTAT 59.346 36.000 0.00 0.00 0.00 1.28
3863 4775 5.763204 ACACTGTAGTTGGTAAGACAATTGG 59.237 40.000 10.83 0.00 32.24 3.16
3901 4835 4.280929 GGTGGTAAAGGCAAGTCTTGAATT 59.719 41.667 16.99 9.42 0.00 2.17
4088 5044 2.422597 TCAACACCCACTAGATTTGCG 58.577 47.619 0.00 0.00 0.00 4.85
4109 5065 9.747898 AAAAGAGTAACTGAGAGAGAAGATAGA 57.252 33.333 0.00 0.00 0.00 1.98
4139 5095 2.616256 CCATGCCTACTGAAGTGCAAGA 60.616 50.000 0.00 0.00 35.76 3.02
4188 5144 2.205074 CTTATGGTCACTCGCCACATC 58.795 52.381 0.00 0.00 39.03 3.06
4195 5151 7.544566 ACAAAATACTGTACTTATGGTCACTCG 59.455 37.037 0.00 0.00 0.00 4.18
4676 5633 3.003068 GCGTCTAGCCGTCTACTGAATAA 59.997 47.826 0.00 0.00 40.81 1.40
4678 5635 1.334243 GCGTCTAGCCGTCTACTGAAT 59.666 52.381 0.00 0.00 40.81 2.57
4679 5636 0.731417 GCGTCTAGCCGTCTACTGAA 59.269 55.000 0.00 0.00 40.81 3.02
4722 5679 1.066071 GTAGCTCCAAGAACCCAGACC 60.066 57.143 0.00 0.00 0.00 3.85
4761 5718 2.502538 CCCTCCAATTCATGCAAATGGT 59.497 45.455 0.00 0.00 0.00 3.55
4851 5812 3.694535 CAGAGCTTTCCTGCATTCATC 57.305 47.619 0.00 0.00 34.99 2.92
4883 5844 8.849168 GGATATTGTGTCCATTTAATCATGACA 58.151 33.333 0.00 0.00 35.76 3.58
4899 5864 3.992943 TCCGTTTCAGGGATATTGTGT 57.007 42.857 0.00 0.00 0.00 3.72
4954 5920 2.919229 CGCTGCAAAATAGCAAAGGAAG 59.081 45.455 0.00 0.00 45.13 3.46
4974 5940 3.541903 GCAATACATTTCCAAAATGCGCG 60.542 43.478 0.00 0.00 0.00 6.86
4993 5959 3.168035 TCTTTATGGAGGGCTTTGCAA 57.832 42.857 0.00 0.00 0.00 4.08
4994 5960 2.897271 TCTTTATGGAGGGCTTTGCA 57.103 45.000 0.00 0.00 0.00 4.08
4995 5961 4.743057 ATTTCTTTATGGAGGGCTTTGC 57.257 40.909 0.00 0.00 0.00 3.68
4996 5962 9.354673 TCTTATATTTCTTTATGGAGGGCTTTG 57.645 33.333 0.00 0.00 0.00 2.77
4998 5964 7.667635 GCTCTTATATTTCTTTATGGAGGGCTT 59.332 37.037 0.00 0.00 0.00 4.35
4999 5965 7.171653 GCTCTTATATTTCTTTATGGAGGGCT 58.828 38.462 0.00 0.00 0.00 5.19
5000 5966 6.942576 TGCTCTTATATTTCTTTATGGAGGGC 59.057 38.462 0.00 0.00 0.00 5.19
5001 5967 9.525826 AATGCTCTTATATTTCTTTATGGAGGG 57.474 33.333 0.00 0.00 0.00 4.30
5019 5985 9.593134 CACTACTTCAGTAATCTAAATGCTCTT 57.407 33.333 0.00 0.00 34.98 2.85
5020 5986 8.972127 TCACTACTTCAGTAATCTAAATGCTCT 58.028 33.333 0.00 0.00 34.98 4.09
5022 5988 9.757227 GATCACTACTTCAGTAATCTAAATGCT 57.243 33.333 0.00 0.00 34.98 3.79
5023 5989 9.757227 AGATCACTACTTCAGTAATCTAAATGC 57.243 33.333 0.00 0.00 34.98 3.56
5029 5995 7.916450 GCGTTTAGATCACTACTTCAGTAATCT 59.084 37.037 0.00 5.42 34.98 2.40
5030 5996 7.916450 AGCGTTTAGATCACTACTTCAGTAATC 59.084 37.037 0.00 0.00 34.98 1.75
5031 5997 7.773149 AGCGTTTAGATCACTACTTCAGTAAT 58.227 34.615 0.00 0.00 34.98 1.89
5032 5998 7.120873 AGAGCGTTTAGATCACTACTTCAGTAA 59.879 37.037 0.00 0.00 37.82 2.24
5033 5999 6.598457 AGAGCGTTTAGATCACTACTTCAGTA 59.402 38.462 0.00 0.00 37.82 2.74
5034 6000 5.416326 AGAGCGTTTAGATCACTACTTCAGT 59.584 40.000 0.00 0.00 37.82 3.41
5035 6001 5.885881 AGAGCGTTTAGATCACTACTTCAG 58.114 41.667 0.00 0.00 37.82 3.02
5036 6002 5.899120 AGAGCGTTTAGATCACTACTTCA 57.101 39.130 0.00 0.00 37.82 3.02
5050 6016 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
5051 6017 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
5052 6018 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
5053 6019 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
5054 6020 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
5060 6026 9.939424 AGTACTACTCCCTCTGTAAAGAAATAT 57.061 33.333 0.00 0.00 0.00 1.28
5061 6027 9.186837 CAGTACTACTCCCTCTGTAAAGAAATA 57.813 37.037 0.00 0.00 0.00 1.40
5062 6028 7.674772 ACAGTACTACTCCCTCTGTAAAGAAAT 59.325 37.037 0.00 0.00 37.55 2.17
5063 6029 7.008941 ACAGTACTACTCCCTCTGTAAAGAAA 58.991 38.462 0.00 0.00 37.55 2.52
5064 6030 6.550163 ACAGTACTACTCCCTCTGTAAAGAA 58.450 40.000 0.00 0.00 37.55 2.52
5065 6031 6.137104 ACAGTACTACTCCCTCTGTAAAGA 57.863 41.667 0.00 0.00 37.55 2.52
5066 6032 6.883217 TGTACAGTACTACTCCCTCTGTAAAG 59.117 42.308 12.07 0.00 41.23 1.85
5067 6033 6.656693 GTGTACAGTACTACTCCCTCTGTAAA 59.343 42.308 12.07 0.00 41.23 2.01
5068 6034 6.176183 GTGTACAGTACTACTCCCTCTGTAA 58.824 44.000 12.07 0.00 41.23 2.41
5069 6035 5.249163 TGTGTACAGTACTACTCCCTCTGTA 59.751 44.000 12.07 0.00 39.54 2.74
5070 6036 4.042560 TGTGTACAGTACTACTCCCTCTGT 59.957 45.833 12.07 0.00 41.32 3.41
5071 6037 4.586884 TGTGTACAGTACTACTCCCTCTG 58.413 47.826 12.07 0.00 0.00 3.35
5072 6038 4.846040 CTGTGTACAGTACTACTCCCTCT 58.154 47.826 12.07 0.00 39.09 3.69
5097 6063 1.449246 AGCTGATGAGTGGCTTCGC 60.449 57.895 0.00 0.00 31.81 4.70
5098 6064 1.088340 CCAGCTGATGAGTGGCTTCG 61.088 60.000 17.39 0.00 33.74 3.79
5100 6066 1.302285 CCCAGCTGATGAGTGGCTT 59.698 57.895 17.39 0.00 33.74 4.35
5102 6068 0.179062 CTACCCAGCTGATGAGTGGC 60.179 60.000 17.39 0.00 0.00 5.01
5103 6069 1.137872 GACTACCCAGCTGATGAGTGG 59.862 57.143 17.39 9.23 0.00 4.00
5104 6070 1.827344 TGACTACCCAGCTGATGAGTG 59.173 52.381 17.39 2.63 0.00 3.51
5105 6071 2.238084 TGACTACCCAGCTGATGAGT 57.762 50.000 17.39 14.34 0.00 3.41
5106 6072 3.834489 ATTGACTACCCAGCTGATGAG 57.166 47.619 17.39 11.05 0.00 2.90
5107 6073 3.519107 TCAATTGACTACCCAGCTGATGA 59.481 43.478 17.39 0.00 0.00 2.92
5108 6074 3.624861 GTCAATTGACTACCCAGCTGATG 59.375 47.826 27.66 8.57 41.65 3.07
5110 6076 3.334583 GTCAATTGACTACCCAGCTGA 57.665 47.619 27.66 0.00 41.65 4.26
5121 6087 5.009610 TCAAAAAGCTGGGTAGTCAATTGAC 59.990 40.000 27.69 27.69 45.08 3.18
5122 6088 5.136828 TCAAAAAGCTGGGTAGTCAATTGA 58.863 37.500 3.38 3.38 0.00 2.57
5123 6089 5.452078 TCAAAAAGCTGGGTAGTCAATTG 57.548 39.130 0.00 0.00 0.00 2.32
5124 6090 5.774690 TCATCAAAAAGCTGGGTAGTCAATT 59.225 36.000 0.00 0.00 0.00 2.32
5125 6091 5.324409 TCATCAAAAAGCTGGGTAGTCAAT 58.676 37.500 0.00 0.00 0.00 2.57
5126 6092 4.724399 TCATCAAAAAGCTGGGTAGTCAA 58.276 39.130 0.00 0.00 0.00 3.18
5127 6093 4.365514 TCATCAAAAAGCTGGGTAGTCA 57.634 40.909 0.00 0.00 0.00 3.41
5128 6094 5.241728 AGTTTCATCAAAAAGCTGGGTAGTC 59.758 40.000 0.00 0.00 0.00 2.59
5129 6095 5.140454 AGTTTCATCAAAAAGCTGGGTAGT 58.860 37.500 0.00 0.00 0.00 2.73
5130 6096 5.712152 AGTTTCATCAAAAAGCTGGGTAG 57.288 39.130 0.00 0.00 0.00 3.18
5131 6097 5.183140 GCTAGTTTCATCAAAAAGCTGGGTA 59.817 40.000 0.00 0.00 33.12 3.69
5132 6098 4.021981 GCTAGTTTCATCAAAAAGCTGGGT 60.022 41.667 0.00 0.00 33.12 4.51
5133 6099 4.022068 TGCTAGTTTCATCAAAAAGCTGGG 60.022 41.667 0.00 0.00 35.32 4.45
5134 6100 5.125100 TGCTAGTTTCATCAAAAAGCTGG 57.875 39.130 0.00 0.00 35.32 4.85
5135 6101 7.043590 GCATATGCTAGTTTCATCAAAAAGCTG 60.044 37.037 20.64 0.00 35.32 4.24
5136 6102 6.976925 GCATATGCTAGTTTCATCAAAAAGCT 59.023 34.615 20.64 0.00 35.32 3.74
5137 6103 6.753279 TGCATATGCTAGTTTCATCAAAAAGC 59.247 34.615 27.13 0.00 42.66 3.51
5138 6104 8.752254 CATGCATATGCTAGTTTCATCAAAAAG 58.248 33.333 27.13 0.00 42.66 2.27
5139 6105 8.637281 CATGCATATGCTAGTTTCATCAAAAA 57.363 30.769 27.13 2.56 42.66 1.94
5155 6121 7.477144 AATTCAACATTTCTGCATGCATATG 57.523 32.000 22.97 23.97 37.36 1.78
5156 6122 8.500753 AAAATTCAACATTTCTGCATGCATAT 57.499 26.923 22.97 12.23 0.00 1.78
5157 6123 7.908827 AAAATTCAACATTTCTGCATGCATA 57.091 28.000 22.97 11.96 0.00 3.14
5158 6124 6.811253 AAAATTCAACATTTCTGCATGCAT 57.189 29.167 22.97 2.59 0.00 3.96
5159 6125 6.621316 AAAAATTCAACATTTCTGCATGCA 57.379 29.167 21.29 21.29 0.00 3.96
5198 6164 9.126151 TGGATTTTCAAATTGTGTAGTCAAGTA 57.874 29.630 0.00 0.00 0.00 2.24
5199 6165 8.006298 TGGATTTTCAAATTGTGTAGTCAAGT 57.994 30.769 0.00 0.00 0.00 3.16
5206 6172 9.868277 GGACAATATGGATTTTCAAATTGTGTA 57.132 29.630 3.45 0.00 37.60 2.90
5207 6173 8.373981 TGGACAATATGGATTTTCAAATTGTGT 58.626 29.630 3.45 0.00 37.60 3.72
5208 6174 8.774890 TGGACAATATGGATTTTCAAATTGTG 57.225 30.769 3.45 0.00 37.60 3.33
5209 6175 8.042515 CCTGGACAATATGGATTTTCAAATTGT 58.957 33.333 0.00 0.00 39.53 2.71
5210 6176 8.259411 TCCTGGACAATATGGATTTTCAAATTG 58.741 33.333 0.00 0.00 0.00 2.32
5211 6177 8.378115 TCCTGGACAATATGGATTTTCAAATT 57.622 30.769 0.00 0.00 0.00 1.82
5212 6178 7.976414 TCCTGGACAATATGGATTTTCAAAT 57.024 32.000 0.00 0.00 0.00 2.32
5213 6179 7.673504 TCTTCCTGGACAATATGGATTTTCAAA 59.326 33.333 0.00 0.00 0.00 2.69
5214 6180 7.181361 TCTTCCTGGACAATATGGATTTTCAA 58.819 34.615 0.00 0.00 0.00 2.69
5215 6181 6.730447 TCTTCCTGGACAATATGGATTTTCA 58.270 36.000 0.00 0.00 0.00 2.69
5216 6182 6.830838 ACTCTTCCTGGACAATATGGATTTTC 59.169 38.462 0.00 0.00 0.00 2.29
5217 6183 6.604795 CACTCTTCCTGGACAATATGGATTTT 59.395 38.462 0.00 0.00 0.00 1.82
5218 6184 6.125029 CACTCTTCCTGGACAATATGGATTT 58.875 40.000 0.00 0.00 0.00 2.17
5219 6185 5.688807 CACTCTTCCTGGACAATATGGATT 58.311 41.667 0.00 0.00 0.00 3.01
5220 6186 4.445448 GCACTCTTCCTGGACAATATGGAT 60.445 45.833 0.00 0.00 0.00 3.41
5221 6187 3.118261 GCACTCTTCCTGGACAATATGGA 60.118 47.826 0.00 0.00 0.00 3.41
5242 6208 1.079612 GTCCTTTGCCAAGCCATGC 60.080 57.895 0.00 0.00 0.00 4.06
5262 6228 3.138884 TGTACAAGCCATGTCACATGT 57.861 42.857 16.74 1.49 42.70 3.21
5303 6269 6.707161 TGAACCTATTAGCAAAAACTACGTGT 59.293 34.615 0.00 0.00 0.00 4.49
5310 6276 5.511729 GCATCGTGAACCTATTAGCAAAAAC 59.488 40.000 0.00 0.00 0.00 2.43
5316 6282 1.792949 CCGCATCGTGAACCTATTAGC 59.207 52.381 0.00 0.00 0.00 3.09
5407 7027 4.734917 AGTAAGCTAGAGTTGCTGTTACG 58.265 43.478 0.00 0.00 41.03 3.18
5408 7028 6.618811 TGTAGTAAGCTAGAGTTGCTGTTAC 58.381 40.000 0.00 0.00 41.03 2.50
5409 7029 6.829229 TGTAGTAAGCTAGAGTTGCTGTTA 57.171 37.500 0.00 0.00 41.03 2.41
5410 7030 5.723672 TGTAGTAAGCTAGAGTTGCTGTT 57.276 39.130 0.00 0.00 41.03 3.16
5411 7031 5.163499 GGATGTAGTAAGCTAGAGTTGCTGT 60.163 44.000 0.00 0.00 41.03 4.40
5412 7032 5.285651 GGATGTAGTAAGCTAGAGTTGCTG 58.714 45.833 0.00 0.00 41.03 4.41
5413 7033 4.342665 GGGATGTAGTAAGCTAGAGTTGCT 59.657 45.833 0.00 0.00 43.32 3.91
5414 7034 4.623002 GGGATGTAGTAAGCTAGAGTTGC 58.377 47.826 0.00 0.00 0.00 4.17
5415 7035 4.338682 ACGGGATGTAGTAAGCTAGAGTTG 59.661 45.833 0.00 0.00 0.00 3.16
5416 7036 4.534797 ACGGGATGTAGTAAGCTAGAGTT 58.465 43.478 0.00 0.00 0.00 3.01
5417 7037 4.167652 ACGGGATGTAGTAAGCTAGAGT 57.832 45.455 0.00 0.00 0.00 3.24
5418 7038 6.630444 TTTACGGGATGTAGTAAGCTAGAG 57.370 41.667 0.00 0.00 34.75 2.43
5419 7039 7.408756 TTTTTACGGGATGTAGTAAGCTAGA 57.591 36.000 0.00 0.00 34.75 2.43
5441 7061 5.266788 TCTTCATGATGGAGCCTCATTTTT 58.733 37.500 8.60 0.00 31.00 1.94
5442 7062 4.863548 TCTTCATGATGGAGCCTCATTTT 58.136 39.130 8.60 0.00 31.00 1.82
5443 7063 4.462133 CTCTTCATGATGGAGCCTCATTT 58.538 43.478 8.60 0.00 31.00 2.32
5444 7064 3.748027 GCTCTTCATGATGGAGCCTCATT 60.748 47.826 27.11 0.00 44.46 2.57
5445 7065 2.224572 GCTCTTCATGATGGAGCCTCAT 60.225 50.000 27.11 0.00 44.46 2.90
5446 7066 1.140452 GCTCTTCATGATGGAGCCTCA 59.860 52.381 27.11 0.00 44.46 3.86
5447 7067 1.881591 GCTCTTCATGATGGAGCCTC 58.118 55.000 27.11 10.94 44.46 4.70
5451 7071 2.358267 GGCTTTGCTCTTCATGATGGAG 59.642 50.000 16.98 16.98 0.00 3.86
5452 7072 2.372264 GGCTTTGCTCTTCATGATGGA 58.628 47.619 8.60 4.11 0.00 3.41
5453 7073 1.065102 CGGCTTTGCTCTTCATGATGG 59.935 52.381 8.60 0.00 0.00 3.51
5454 7074 1.533338 GCGGCTTTGCTCTTCATGATG 60.533 52.381 0.00 0.00 0.00 3.07
5455 7075 0.737219 GCGGCTTTGCTCTTCATGAT 59.263 50.000 0.00 0.00 0.00 2.45
5456 7076 1.638388 CGCGGCTTTGCTCTTCATGA 61.638 55.000 0.00 0.00 0.00 3.07
5457 7077 1.226211 CGCGGCTTTGCTCTTCATG 60.226 57.895 0.00 0.00 0.00 3.07
5458 7078 1.639298 GACGCGGCTTTGCTCTTCAT 61.639 55.000 12.47 0.00 0.00 2.57
5459 7079 2.280797 ACGCGGCTTTGCTCTTCA 60.281 55.556 12.47 0.00 0.00 3.02
5460 7080 2.476499 GACGCGGCTTTGCTCTTC 59.524 61.111 12.47 0.00 0.00 2.87
5461 7081 3.414700 CGACGCGGCTTTGCTCTT 61.415 61.111 11.76 0.00 0.00 2.85
5579 7199 4.814294 ACCTTCCCTAAGCGCGCG 62.814 66.667 28.44 28.44 0.00 6.86
5580 7200 3.195698 CACCTTCCCTAAGCGCGC 61.196 66.667 26.66 26.66 0.00 6.86
5581 7201 2.511600 CCACCTTCCCTAAGCGCG 60.512 66.667 0.00 0.00 0.00 6.86
5582 7202 1.745489 CACCACCTTCCCTAAGCGC 60.745 63.158 0.00 0.00 0.00 5.92
5583 7203 1.078426 CCACCACCTTCCCTAAGCG 60.078 63.158 0.00 0.00 0.00 4.68
5584 7204 1.378646 GCCACCACCTTCCCTAAGC 60.379 63.158 0.00 0.00 0.00 3.09
5585 7205 1.078426 CGCCACCACCTTCCCTAAG 60.078 63.158 0.00 0.00 0.00 2.18
5586 7206 2.598787 CCGCCACCACCTTCCCTAA 61.599 63.158 0.00 0.00 0.00 2.69
5587 7207 3.006728 CCGCCACCACCTTCCCTA 61.007 66.667 0.00 0.00 0.00 3.53
5605 7225 1.376037 CACAGAGAGGGGAAACGCC 60.376 63.158 0.00 0.00 46.15 5.68
5606 7226 4.285851 CACAGAGAGGGGAAACGC 57.714 61.111 0.00 0.00 45.13 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.