AutoCloner

Multiple sequence alignment - TraesCS7A01G316200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G316200	chr7A	100.000	3546	0	0	1	3546	450964742	450968287	0.000000e+00	6549.0
1	TraesCS7A01G316200	chr7A	97.561	697	17	0	2850	3546	260316241	260315545	0.000000e+00	1194.0
2	TraesCS7A01G316200	chr7A	97.143	700	20	0	2847	3546	672321012	672321711	0.000000e+00	1182.0
3	TraesCS7A01G316200	chr7A	80.915	634	96	18	1074	1697	452757019	452756401	8.910000e-131	477.0
4	TraesCS7A01G316200	chr7A	100.000	30	0	0	998	1027	452757085	452757056	4.950000e-04	56.5
5	TraesCS7A01G316200	chr7D	91.527	2750	130	37	179	2850	396984239	396986963	0.000000e+00	3692.0
6	TraesCS7A01G316200	chr7D	77.582	852	143	37	857	1697	397195394	397196208	4.140000e-129	472.0
7	TraesCS7A01G316200	chr7D	94.022	184	10	1	8	191	396984041	396984223	9.700000e-71	278.0
8	TraesCS7A01G316200	chr7B	90.898	1670	77	15	737	2335	400637229	400638894	0.000000e+00	2172.0
9	TraesCS7A01G316200	chr7B	97.126	696	20	0	2851	3546	583379348	583380043	0.000000e+00	1175.0
10	TraesCS7A01G316200	chr7B	88.602	737	49	11	1	720	400636460	400637178	0.000000e+00	863.0
11	TraesCS7A01G316200	chr7B	96.739	460	11	2	2391	2850	400638893	400639348	0.000000e+00	763.0
12	TraesCS7A01G316200	chr7B	79.692	714	103	28	998	1697	400925262	400925947	8.910000e-131	477.0
13	TraesCS7A01G316200	chr3A	97.557	696	17	0	2851	3546	389505601	389504906	0.000000e+00	1192.0
14	TraesCS7A01G316200	chr5A	97.421	698	16	2	2849	3546	326663713	326664408	0.000000e+00	1188.0
15	TraesCS7A01G316200	chr6A	97.414	696	18	0	2851	3546	3683281	3683976	0.000000e+00	1186.0
16	TraesCS7A01G316200	chr2B	97.270	696	18	1	2851	3546	216946116	216945422	0.000000e+00	1179.0
17	TraesCS7A01G316200	chr2B	97.131	697	20	0	2850	3546	248153618	248154314	0.000000e+00	1177.0
18	TraesCS7A01G316200	chr4A	96.857	700	22	0	2847	3546	625184979	625185678	0.000000e+00	1171.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G316200	chr7A	450964742	450968287	3545	False	6549.00	6549	100.000000	1	3546	1	chr7A.!!$F1	3545
1	TraesCS7A01G316200	chr7A	260315545	260316241	696	True	1194.00	1194	97.561000	2850	3546	1	chr7A.!!$R1	696
2	TraesCS7A01G316200	chr7A	672321012	672321711	699	False	1182.00	1182	97.143000	2847	3546	1	chr7A.!!$F2	699
3	TraesCS7A01G316200	chr7A	452756401	452757085	684	True	266.75	477	90.457500	998	1697	2	chr7A.!!$R2	699
4	TraesCS7A01G316200	chr7D	396984041	396986963	2922	False	1985.00	3692	92.774500	8	2850	2	chr7D.!!$F2	2842
5	TraesCS7A01G316200	chr7D	397195394	397196208	814	False	472.00	472	77.582000	857	1697	1	chr7D.!!$F1	840
6	TraesCS7A01G316200	chr7B	400636460	400639348	2888	False	1266.00	2172	92.079667	1	2850	3	chr7B.!!$F3	2849
7	TraesCS7A01G316200	chr7B	583379348	583380043	695	False	1175.00	1175	97.126000	2851	3546	1	chr7B.!!$F2	695
8	TraesCS7A01G316200	chr7B	400925262	400925947	685	False	477.00	477	79.692000	998	1697	1	chr7B.!!$F1	699
9	TraesCS7A01G316200	chr3A	389504906	389505601	695	True	1192.00	1192	97.557000	2851	3546	1	chr3A.!!$R1	695
10	TraesCS7A01G316200	chr5A	326663713	326664408	695	False	1188.00	1188	97.421000	2849	3546	1	chr5A.!!$F1	697
11	TraesCS7A01G316200	chr6A	3683281	3683976	695	False	1186.00	1186	97.414000	2851	3546	1	chr6A.!!$F1	695
12	TraesCS7A01G316200	chr2B	216945422	216946116	694	True	1179.00	1179	97.270000	2851	3546	1	chr2B.!!$R1	695
13	TraesCS7A01G316200	chr2B	248153618	248154314	696	False	1177.00	1177	97.131000	2850	3546	1	chr2B.!!$F1	696
14	TraesCS7A01G316200	chr4A	625184979	625185678	699	False	1171.00	1171	96.857000	2847	3546	1	chr4A.!!$F1	699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
545	596	0.038343	ACGGCGCAAAAGATTTGCAT	60.038	45.0	22.98	6.78	45.14	3.96	F
587	640	0.532640	AATGCTCACACTCACACGCA	60.533	50.0	0.00	0.00	0.00	5.24	F
1769	1926	0.381801	GCCAGTGCCAATCGGTTATG	59.618	55.0	0.00	0.00	33.28	1.90	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1485	1629	0.393820	CCAGGCCTGCACACAAAATT	59.606	50.000	28.39	0.00	1.82	R
1971	2156	1.265635	GAGTGGCATGCGTTTACAACA	59.734	47.619	12.44	0.00	3.33	R
2873	3092	1.937899	CTCGGTTCGACCAAAAAGTGT	59.062	47.619	5.15	38.47	3.55	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	7.262048	TGTCTGGTTGGTTGTATTTTTCTTTC	58.738	34.615	0.00	0.00	0.00	2.62
78	79	9.349713	TGGTTGTATTTTTCTTTCTGAGTGTAT	57.650	29.630	0.00	0.00	0.00	2.29
101	102	1.414550	TGAAGGGTGACATTGTGACGA	59.585	47.619	0.00	0.00	32.27	4.20
142	143	1.378646	TTTGGTGACGTTGGGCACA	60.379	52.632	7.33	0.00	36.76	4.57
158	159	3.251004	GGGCACACTCAAGTTTCTAGTTG	59.749	47.826	0.00	0.00	36.26	3.16
192	221	7.276438	GGAAAATCCAGTTGATGTTTTCTATGC	59.724	37.037	8.28	0.00	36.28	3.14
225	254	6.145048	GCTATGTTATCAAAAGATGCCAATGC	59.855	38.462	0.00	0.00	38.26	3.56
233	262	1.076485	GATGCCAATGCCCCTCACT	60.076	57.895	0.00	0.00	36.33	3.41
242	271	1.729586	TGCCCCTCACTAGTGTTTCT	58.270	50.000	21.99	0.00	0.00	2.52
260	289	4.647424	TTCTTGATTGAAACCCACACAC	57.353	40.909	0.00	0.00	0.00	3.82
261	290	2.955660	TCTTGATTGAAACCCACACACC	59.044	45.455	0.00	0.00	0.00	4.16
277	306	0.324943	CACCCCCGAGTGAACAGAAT	59.675	55.000	0.00	0.00	40.34	2.40
308	352	5.185454	TCTGCGTGGATGAAAGATTACAAT	58.815	37.500	0.00	0.00	0.00	2.71
312	356	6.138761	GCGTGGATGAAAGATTACAATCATC	58.861	40.000	4.85	6.15	44.67	2.92
349	393	5.023533	ACTCTAACAAACTCTTGCACAGA	57.976	39.130	0.00	0.00	35.84	3.41
385	429	5.416271	TTTCCATGTACTCCCTCTGTAAC	57.584	43.478	0.00	0.00	0.00	2.50
386	430	4.332683	TCCATGTACTCCCTCTGTAACT	57.667	45.455	0.00	0.00	0.00	2.24
387	431	5.461516	TCCATGTACTCCCTCTGTAACTA	57.538	43.478	0.00	0.00	0.00	2.24
389	433	6.441222	TCCATGTACTCCCTCTGTAACTAAT	58.559	40.000	0.00	0.00	0.00	1.73
390	434	7.589081	TCCATGTACTCCCTCTGTAACTAATA	58.411	38.462	0.00	0.00	0.00	0.98
391	435	8.232412	TCCATGTACTCCCTCTGTAACTAATAT	58.768	37.037	0.00	0.00	0.00	1.28
392	436	9.529823	CCATGTACTCCCTCTGTAACTAATATA	57.470	37.037	0.00	0.00	0.00	0.86
528	579	2.752354	TCTTCCCATGCCACAAATAACG	59.248	45.455	0.00	0.00	0.00	3.18
545	596	0.038343	ACGGCGCAAAAGATTTGCAT	60.038	45.000	22.98	6.78	45.14	3.96
587	640	0.532640	AATGCTCACACTCACACGCA	60.533	50.000	0.00	0.00	0.00	5.24
605	658	5.163663	ACACGCAACAATATACCATGGAAAG	60.164	40.000	21.47	4.34	0.00	2.62
606	659	4.947388	ACGCAACAATATACCATGGAAAGT	59.053	37.500	21.47	5.00	0.00	2.66
645	698	3.366052	TGAAGCCTGGAAAGATAACCC	57.634	47.619	0.00	0.00	0.00	4.11
649	702	3.635591	AGCCTGGAAAGATAACCCATTG	58.364	45.455	0.00	0.00	0.00	2.82
720	790	4.904895	AGGGGTCTTAGAAACTTGGTAC	57.095	45.455	0.00	0.00	0.00	3.34
722	792	5.658474	AGGGGTCTTAGAAACTTGGTACTA	58.342	41.667	0.00	0.00	0.00	1.82
723	793	5.720520	AGGGGTCTTAGAAACTTGGTACTAG	59.279	44.000	0.00	0.00	0.00	2.57
1095	1217	0.839946	ATCTGGTCTAATGGCGGCTT	59.160	50.000	11.43	0.00	0.00	4.35
1219	1362	2.035442	GTTGCTCTCCGACCTTGCC	61.035	63.158	0.00	0.00	0.00	4.52
1251	1394	3.875727	CGATTGGAGTGATTCTGATGCTT	59.124	43.478	0.00	0.00	0.00	3.91
1256	1400	3.760684	GGAGTGATTCTGATGCTTTTGGT	59.239	43.478	0.00	0.00	0.00	3.67
1371	1515	0.797249	CCCTCGTGAAGAGCGTTACG	60.797	60.000	0.00	0.00	45.54	3.18
1422	1566	1.050988	ATGGTCAGATCCGTCCCCTG	61.051	60.000	0.00	0.00	0.00	4.45
1446	1590	8.251383	TGTTAAACACCATTCCCATTTTTCTA	57.749	30.769	0.00	0.00	0.00	2.10
1485	1629	3.693578	TGCAAGTGTGTTGATGTTTGAGA	59.306	39.130	0.00	0.00	0.00	3.27
1551	1706	7.871853	TGTACTTTTTGATTAAGAAGGCTGTC	58.128	34.615	5.64	0.00	33.54	3.51
1758	1915	1.845809	CGTGAGAACTTGCCAGTGCC	61.846	60.000	0.00	0.00	36.33	5.01
1769	1926	0.381801	GCCAGTGCCAATCGGTTATG	59.618	55.000	0.00	0.00	33.28	1.90
1774	1934	3.312421	CAGTGCCAATCGGTTATGTTAGG	59.688	47.826	0.00	0.00	33.28	2.69
1776	1936	4.134563	GTGCCAATCGGTTATGTTAGGAT	58.865	43.478	0.00	0.00	33.28	3.24
1777	1937	4.578928	GTGCCAATCGGTTATGTTAGGATT	59.421	41.667	0.00	0.00	33.28	3.01
1803	1963	5.518848	TTTGTGTTGCATCAGTTGATTCT	57.481	34.783	0.00	0.00	31.21	2.40
1854	2014	4.699257	AGAAAGCTTTAGGTTGATCAGCTG	59.301	41.667	12.68	7.63	39.98	4.24
1971	2156	7.672239	TGCTATCTTGGTTTTTATGGGTTTAGT	59.328	33.333	0.00	0.00	0.00	2.24
2056	2250	3.073274	AGGTGAAATTGACTAGTGCCC	57.927	47.619	0.00	0.00	0.00	5.36
2097	2291	3.960102	TGAAACCATCTGCCTCTTGTTTT	59.040	39.130	0.00	0.00	0.00	2.43
2098	2292	4.037923	TGAAACCATCTGCCTCTTGTTTTC	59.962	41.667	0.00	0.00	0.00	2.29
2102	2296	3.571401	CCATCTGCCTCTTGTTTTCTTGT	59.429	43.478	0.00	0.00	0.00	3.16
2129	2323	7.441157	TCCATACAAGAGTACACAACTTGAAAG	59.559	37.037	20.34	12.52	42.12	2.62
2173	2367	9.048446	TGATAAAATGTATCGTAGGGTTTAAGC	57.952	33.333	0.00	0.00	0.00	3.09
2191	2385	6.870971	TTAAGCTTTACTTGGTTGTGGTAG	57.129	37.500	3.20	0.00	39.58	3.18
2198	2392	4.081322	ACTTGGTTGTGGTAGTAGTTGG	57.919	45.455	0.00	0.00	0.00	3.77
2200	2394	4.080186	ACTTGGTTGTGGTAGTAGTTGGTT	60.080	41.667	0.00	0.00	0.00	3.67
2272	2490	7.887996	TTTCAAGCATTCCAACAAATACATC	57.112	32.000	0.00	0.00	0.00	3.06
2278	2496	6.832384	AGCATTCCAACAAATACATCTCATCT	59.168	34.615	0.00	0.00	0.00	2.90
2383	2602	7.094975	GGCTTTGTTGAACTTTAAAACCTGTTT	60.095	33.333	0.00	0.00	0.00	2.83
2429	2648	3.735746	GCATTTTTGCTAAGTCGCTTTGT	59.264	39.130	0.00	0.00	0.00	2.83
2435	2654	1.801178	GCTAAGTCGCTTTGTGCTCTT	59.199	47.619	0.00	0.00	40.11	2.85
2437	2656	0.947244	AAGTCGCTTTGTGCTCTTGG	59.053	50.000	0.00	0.00	40.11	3.61
2443	2662	0.954452	CTTTGTGCTCTTGGTGGGTC	59.046	55.000	0.00	0.00	0.00	4.46
2448	2667	1.668151	GCTCTTGGTGGGTCGTGTC	60.668	63.158	0.00	0.00	0.00	3.67
2491	2710	8.913656	GTTGTTACTAGAGTGTAATCTGACAAC	58.086	37.037	0.00	12.33	35.54	3.32
2826	3045	1.336125	GCTTTCAGTGCACTCAAGCTT	59.664	47.619	33.93	9.36	36.81	3.74
2873	3092	2.887783	TGAAATCTAAAAAGTGGCCGCA	59.112	40.909	20.59	0.00	0.00	5.69
2918	3137	2.783275	CTCTCACAGCGCATGCAC	59.217	61.111	19.57	8.32	46.23	4.57
2939	3158	5.694816	CACGTGGTAATTTATTTGTCTGCA	58.305	37.500	7.95	0.00	0.00	4.41
2972	3191	3.242936	GGCGTGGCATTAAATACGTTCAT	60.243	43.478	0.00	0.00	38.67	2.57
3060	3279	3.793559	AGCTATATCTTTCAAACCGCGT	58.206	40.909	4.92	0.00	0.00	6.01
3261	3480	2.112928	TTTGGAGCTGCGCCTTCA	59.887	55.556	22.83	0.00	0.00	3.02
3272	3491	3.668447	CTGCGCCTTCATATGAGGTTAT	58.332	45.455	13.26	0.00	0.00	1.89
3401	3620	7.811117	TGTTTAGTTGGCTTGTAATGTAGTT	57.189	32.000	0.00	0.00	0.00	2.24

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	4.081476	TGTCACCCTTCATCATACACTCAG	60.081	45.833	0.00	0.00	0.00	3.35
78	79	3.411446	GTCACAATGTCACCCTTCATCA	58.589	45.455	0.00	0.00	0.00	3.07
80	81	2.038426	TCGTCACAATGTCACCCTTCAT	59.962	45.455	0.00	0.00	0.00	2.57
142	143	9.256228	TCCAGTATATCAACTAGAAACTTGAGT	57.744	33.333	0.00	0.00	30.04	3.41
225	254	4.559862	ATCAAGAAACACTAGTGAGGGG	57.440	45.455	29.30	12.60	0.00	4.79
242	271	2.035632	GGGTGTGTGGGTTTCAATCAA	58.964	47.619	0.00	0.00	0.00	2.57
254	283	1.597027	GTTCACTCGGGGGTGTGTG	60.597	63.158	0.00	0.00	38.28	3.82
260	289	0.613260	TCATTCTGTTCACTCGGGGG	59.387	55.000	0.00	0.00	0.00	5.40
261	290	1.276421	AGTCATTCTGTTCACTCGGGG	59.724	52.381	0.00	0.00	0.00	5.73
277	306	0.176449	CATCCACGCAGATCCAGTCA	59.824	55.000	0.00	0.00	0.00	3.41
308	352	4.164796	AGAGTTTGCATGGAGTATGGATGA	59.835	41.667	0.00	0.00	36.96	2.92
312	356	5.185454	TGTTAGAGTTTGCATGGAGTATGG	58.815	41.667	0.00	0.00	37.26	2.74
556	607	6.073276	TGAGTGTGAGCATTGTGTTGTTATAC	60.073	38.462	0.00	0.00	0.00	1.47
557	608	5.994668	TGAGTGTGAGCATTGTGTTGTTATA	59.005	36.000	0.00	0.00	0.00	0.98
587	640	6.095440	GCACAGACTTTCCATGGTATATTGTT	59.905	38.462	12.58	0.00	0.00	2.83
605	658	5.300969	TCATTAAGCTCATTTGCACAGAC	57.699	39.130	0.00	0.00	34.99	3.51
606	659	5.946298	CTTCATTAAGCTCATTTGCACAGA	58.054	37.500	0.00	0.00	34.99	3.41
634	687	6.937436	ATCCGTAACAATGGGTTATCTTTC	57.063	37.500	0.00	0.00	43.50	2.62
694	764	7.578458	ACCAAGTTTCTAAGACCCCTATAAA	57.422	36.000	0.00	0.00	0.00	1.40
695	765	7.902941	AGTACCAAGTTTCTAAGACCCCTATAA	59.097	37.037	0.00	0.00	0.00	0.98
696	766	7.425003	AGTACCAAGTTTCTAAGACCCCTATA	58.575	38.462	0.00	0.00	0.00	1.31
697	767	6.269974	AGTACCAAGTTTCTAAGACCCCTAT	58.730	40.000	0.00	0.00	0.00	2.57
775	881	2.043980	CCGGTTGGGATGGTTTCCG	61.044	63.158	0.00	0.00	46.52	4.30
1095	1217	4.243008	TGCGCCAAACAGTCGGGA	62.243	61.111	4.18	0.00	0.00	5.14
1105	1227	1.223487	GATACCCTTCCTGCGCCAA	59.777	57.895	4.18	0.00	0.00	4.52
1251	1394	1.781025	CGACCTGCGCAAGAACCAAA	61.781	55.000	14.09	0.00	43.02	3.28
1256	1400	2.733218	CGTCGACCTGCGCAAGAA	60.733	61.111	14.09	0.00	40.61	2.52
1371	1515	1.524849	GCGGAGGATCTTGCTTCCC	60.525	63.158	0.00	0.00	34.46	3.97
1422	1566	7.330946	GCTAGAAAAATGGGAATGGTGTTTAAC	59.669	37.037	0.00	0.00	0.00	2.01
1446	1590	2.050477	GCACAAGCATAAACAACGCT	57.950	45.000	0.00	0.00	41.58	5.07
1485	1629	0.393820	CCAGGCCTGCACACAAAATT	59.606	50.000	28.39	0.00	0.00	1.82
1551	1706	2.547211	CTCAAGATGCTTCCTAATGGCG	59.453	50.000	0.00	0.00	0.00	5.69
1730	1886	2.851008	GCAAGTTCTCACGTTCAGTTGC	60.851	50.000	8.87	8.87	33.00	4.17
1769	1926	8.755696	TGATGCAACACAAAATAAATCCTAAC	57.244	30.769	0.00	0.00	0.00	2.34
1774	1934	8.296799	TCAACTGATGCAACACAAAATAAATC	57.703	30.769	0.00	0.00	0.00	2.17
1776	1936	8.659925	AATCAACTGATGCAACACAAAATAAA	57.340	26.923	0.00	0.00	34.49	1.40
1777	1937	8.143193	AGAATCAACTGATGCAACACAAAATAA	58.857	29.630	0.00	0.00	32.32	1.40
1789	1949	2.097142	GCAGGACAGAATCAACTGATGC	59.903	50.000	0.00	0.00	40.63	3.91
1792	1952	3.244665	ACATGCAGGACAGAATCAACTGA	60.245	43.478	4.84	0.00	40.63	3.41
1803	1963	6.892658	AGTAATTTGTAAACATGCAGGACA	57.107	33.333	4.84	0.00	0.00	4.02
1840	2000	3.861341	GCACCAGCTGATCAACCTA	57.139	52.632	17.39	0.00	37.91	3.08
1854	2014	3.874392	AAATGGCATTTGAGTAGCACC	57.126	42.857	23.80	0.00	0.00	5.01
1971	2156	1.265635	GAGTGGCATGCGTTTACAACA	59.734	47.619	12.44	0.00	0.00	3.33
2056	2250	8.638873	TGGTTTCAGGTCTATACACATACTATG	58.361	37.037	0.00	0.00	0.00	2.23
2102	2296	6.822442	TCAAGTTGTGTACTCTTGTATGGAA	58.178	36.000	2.11	0.00	39.36	3.53
2118	2312	6.590234	AAACAAGTCTTCCTTTCAAGTTGT	57.410	33.333	2.11	0.00	28.66	3.32
2148	2342	9.269453	AGCTTAAACCCTACGATACATTTTATC	57.731	33.333	0.00	0.00	0.00	1.75
2166	2360	5.898174	ACCACAACCAAGTAAAGCTTAAAC	58.102	37.500	0.00	1.03	35.27	2.01
2173	2367	6.204108	CCAACTACTACCACAACCAAGTAAAG	59.796	42.308	0.00	0.00	0.00	1.85
2226	2444	9.995003	TGAAAATTACAGCAAAAACTCCATTAT	57.005	25.926	0.00	0.00	0.00	1.28
2227	2445	9.823647	TTGAAAATTACAGCAAAAACTCCATTA	57.176	25.926	0.00	0.00	0.00	1.90
2272	2490	5.491070	TGGAAGTATCACACCAAAGATGAG	58.509	41.667	0.00	0.00	0.00	2.90
2278	2496	6.620877	AGAGTATGGAAGTATCACACCAAA	57.379	37.500	0.00	0.00	36.00	3.28
2356	2575	5.872070	CAGGTTTTAAAGTTCAACAAAGCCA	59.128	36.000	7.25	0.00	34.70	4.75
2358	2577	6.961359	ACAGGTTTTAAAGTTCAACAAAGC	57.039	33.333	0.00	0.00	0.00	3.51
2383	2602	7.121020	TGCAAGCACAGATGAATGAATTACTTA	59.879	33.333	0.00	0.00	0.00	2.24
2429	2648	2.377628	GACACGACCCACCAAGAGCA	62.378	60.000	0.00	0.00	0.00	4.26
2443	2662	1.737793	GCAGGTATGAAAAGGGACACG	59.262	52.381	0.00	0.00	0.00	4.49
2448	2667	3.157087	ACAACTGCAGGTATGAAAAGGG	58.843	45.455	19.93	0.00	0.00	3.95
2491	2710	3.002042	CGCTGCAGACAATCAAGGATAAG	59.998	47.826	20.43	0.00	0.00	1.73
2826	3045	7.347222	AGGATAACCATATAGTCAAACTGTCCA	59.653	37.037	0.00	0.00	38.94	4.02
2873	3092	1.937899	CTCGGTTCGACCAAAAAGTGT	59.062	47.619	5.15	0.00	38.47	3.55
2918	3137	6.305399	CACTTGCAGACAAATAAATTACCACG	59.695	38.462	0.00	0.00	34.74	4.94
2939	3158	2.040544	GCCACGCCTACATGCACTT	61.041	57.895	0.00	0.00	0.00	3.16
2972	3191	8.426489	TGTCTTTCTTAAACTAAAGGAGCAGTA	58.574	33.333	0.00	0.00	34.22	2.74
3060	3279	6.205784	GTGAAAACAGATTTGAATTCCGACA	58.794	36.000	2.27	0.00	0.00	4.35
3272	3491	2.366266	AGTTGTCGTGGTTGCTAGGTTA	59.634	45.455	0.00	0.00	0.00	2.85

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.