Multiple sequence alignment - TraesCS7A01G316000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G316000 chr7A 100.000 4944 0 0 1 4944 450414624 450409681 0.000000e+00 9130.0
1 TraesCS7A01G316000 chr7A 93.168 161 10 1 4785 4944 7277124 7277284 8.270000e-58 235.0
2 TraesCS7A01G316000 chr7B 92.966 4123 164 51 730 4788 399882771 399878711 0.000000e+00 5891.0
3 TraesCS7A01G316000 chr7D 91.924 4086 186 61 730 4745 396451225 396447214 0.000000e+00 5585.0
4 TraesCS7A01G316000 chr7D 84.240 533 78 4 4 533 496162263 496161734 9.490000e-142 514.0
5 TraesCS7A01G316000 chr7D 88.489 417 33 8 4374 4787 593991324 593991728 1.600000e-134 490.0
6 TraesCS7A01G316000 chr3D 87.638 542 64 2 1 539 9742757 9742216 1.170000e-175 627.0
7 TraesCS7A01G316000 chr3D 85.185 162 19 4 556 713 434134026 434133866 1.420000e-35 161.0
8 TraesCS7A01G316000 chr3A 87.242 533 65 1 4 533 425246455 425245923 5.470000e-169 604.0
9 TraesCS7A01G316000 chr1D 87.571 354 38 3 183 532 106298019 106297668 5.960000e-109 405.0
10 TraesCS7A01G316000 chr1D 90.909 187 17 0 1 187 106306674 106306488 8.220000e-63 252.0
11 TraesCS7A01G316000 chr6A 96.273 161 6 0 4784 4944 24863322 24863482 1.060000e-66 265.0
12 TraesCS7A01G316000 chr2B 86.364 176 19 3 550 721 37886396 37886570 2.350000e-43 187.0
13 TraesCS7A01G316000 chr2B 85.629 167 19 3 552 713 479504415 479504249 2.370000e-38 171.0
14 TraesCS7A01G316000 chr4A 88.889 153 11 6 4787 4936 674520161 674520012 3.040000e-42 183.0
15 TraesCS7A01G316000 chr4A 84.472 161 16 7 4787 4944 674468781 674468627 3.080000e-32 150.0
16 TraesCS7A01G316000 chr6B 86.826 167 17 3 552 713 104084518 104084352 1.090000e-41 182.0
17 TraesCS7A01G316000 chr6B 84.848 165 20 3 557 716 21908568 21908732 1.420000e-35 161.0
18 TraesCS7A01G316000 chr5A 86.957 161 18 1 556 713 691401352 691401192 1.410000e-40 178.0
19 TraesCS7A01G316000 chr5B 84.706 170 21 4 548 713 474318514 474318346 1.100000e-36 165.0
20 TraesCS7A01G316000 chr5B 82.895 152 24 2 4787 4937 44673809 44673959 8.630000e-28 135.0
21 TraesCS7A01G316000 chr2A 86.275 153 17 4 4787 4937 670317467 670317317 3.960000e-36 163.0
22 TraesCS7A01G316000 chr1B 84.615 169 20 4 556 720 72877217 72877051 3.960000e-36 163.0
23 TraesCS7A01G316000 chr3B 83.908 174 21 5 552 720 263380329 263380158 5.120000e-35 159.0
24 TraesCS7A01G316000 chr2D 84.211 152 22 2 4787 4937 630464824 630464674 3.990000e-31 147.0
25 TraesCS7A01G316000 chr4B 83.766 154 21 4 4785 4936 109319226 109319377 5.160000e-30 143.0
26 TraesCS7A01G316000 chrUn 79.755 163 27 5 4787 4944 8487513 8487674 4.040000e-21 113.0
27 TraesCS7A01G316000 chr5D 92.188 64 3 1 470 533 85517788 85517727 6.820000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G316000 chr7A 450409681 450414624 4943 True 9130 9130 100.000 1 4944 1 chr7A.!!$R1 4943
1 TraesCS7A01G316000 chr7B 399878711 399882771 4060 True 5891 5891 92.966 730 4788 1 chr7B.!!$R1 4058
2 TraesCS7A01G316000 chr7D 396447214 396451225 4011 True 5585 5585 91.924 730 4745 1 chr7D.!!$R1 4015
3 TraesCS7A01G316000 chr7D 496161734 496162263 529 True 514 514 84.240 4 533 1 chr7D.!!$R2 529
4 TraesCS7A01G316000 chr3D 9742216 9742757 541 True 627 627 87.638 1 539 1 chr3D.!!$R1 538
5 TraesCS7A01G316000 chr3A 425245923 425246455 532 True 604 604 87.242 4 533 1 chr3A.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
912 921 1.041437 CCTTTTTACCGCAAACCCCA 58.959 50.0 0.0 0.0 0.00 4.96 F
2339 2369 0.111061 ATTTCACTGCCTCTGCACCA 59.889 50.0 0.0 0.0 44.23 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2708 2746 0.777446 TCCAAACTAGGCCTGCCTTT 59.223 50.0 17.99 6.92 45.70 3.11 R
4003 4078 0.907486 TCCATGGAACTGGAGCTGAG 59.093 55.0 13.46 0.00 40.43 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 1.116536 TGCAGGACCAGGACAACGTA 61.117 55.000 0.00 0.00 0.00 3.57
85 86 3.179830 ACAACGTAGATCACATTCTCGC 58.820 45.455 0.00 0.00 0.00 5.03
92 93 2.360483 AGATCACATTCTCGCGAGATGT 59.640 45.455 37.00 33.32 40.84 3.06
164 165 4.643387 GCACCGCCAACCCAGAGT 62.643 66.667 0.00 0.00 0.00 3.24
166 167 1.375523 CACCGCCAACCCAGAGTAC 60.376 63.158 0.00 0.00 0.00 2.73
170 171 1.758592 GCCAACCCAGAGTACCACA 59.241 57.895 0.00 0.00 0.00 4.17
179 180 3.430374 CCCAGAGTACCACATTTACCGAG 60.430 52.174 0.00 0.00 0.00 4.63
208 209 2.572290 CCAACAAAGGACGAGGTTCTT 58.428 47.619 0.00 0.00 31.91 2.52
209 210 3.495453 CCCAACAAAGGACGAGGTTCTTA 60.495 47.826 0.00 0.00 28.80 2.10
222 223 4.083484 CGAGGTTCTTAGGCAAAATTCGTT 60.083 41.667 0.00 0.00 0.00 3.85
276 283 1.305201 GGCGTTGTGGAAGAGAAACA 58.695 50.000 0.00 0.00 0.00 2.83
298 305 2.353704 CGAGGGTGTTCAATAGAGTGCA 60.354 50.000 0.00 0.00 0.00 4.57
303 310 3.684788 GGTGTTCAATAGAGTGCACGATT 59.315 43.478 12.01 9.81 0.00 3.34
325 332 4.681978 GACGCCCGAGCAACTGGT 62.682 66.667 0.00 0.00 39.83 4.00
328 335 2.045926 GCCCGAGCAACTGGTGAT 60.046 61.111 0.00 0.00 39.53 3.06
349 356 1.396301 GCTTGTGCTTTCGGAGATCAG 59.604 52.381 0.00 0.00 33.70 2.90
356 363 2.103373 CTTTCGGAGATCAGGGAGTGA 58.897 52.381 0.00 0.00 40.38 3.41
363 370 3.214023 ATCAGGGAGTGATCGCTCA 57.786 52.632 31.63 15.86 42.80 4.26
373 380 3.232213 GTGATCGCTCACTGGTTTAGA 57.768 47.619 12.03 0.00 46.84 2.10
405 412 4.570369 GCTTAGATCCTTTTGTGAGAGAGC 59.430 45.833 0.00 0.00 0.00 4.09
415 422 6.128172 CCTTTTGTGAGAGAGCGATTTTGTAT 60.128 38.462 0.00 0.00 0.00 2.29
418 425 4.562789 TGTGAGAGAGCGATTTTGTATTCG 59.437 41.667 0.00 0.00 38.37 3.34
441 448 2.160205 TCGGTGTTGGTGTTTGTCAAA 58.840 42.857 0.00 0.00 0.00 2.69
468 475 3.860641 TGTTCGCATCTTGCTAGATTGA 58.139 40.909 8.00 6.82 42.25 2.57
551 558 3.806316 AAGACGCAATTTGAAGTACGG 57.194 42.857 0.00 0.00 0.00 4.02
552 559 2.762745 AGACGCAATTTGAAGTACGGT 58.237 42.857 0.00 0.00 0.00 4.83
553 560 3.916761 AGACGCAATTTGAAGTACGGTA 58.083 40.909 0.00 0.00 0.00 4.02
554 561 3.924686 AGACGCAATTTGAAGTACGGTAG 59.075 43.478 0.00 0.00 0.00 3.18
555 562 3.656559 ACGCAATTTGAAGTACGGTAGT 58.343 40.909 0.00 0.00 0.00 2.73
556 563 4.808558 ACGCAATTTGAAGTACGGTAGTA 58.191 39.130 0.00 0.00 0.00 1.82
569 576 1.936547 CGGTAGTACTCCGTCTGTACC 59.063 57.143 19.49 10.28 42.62 3.34
570 577 2.419297 CGGTAGTACTCCGTCTGTACCT 60.419 54.545 19.49 0.00 42.62 3.08
571 578 3.181475 CGGTAGTACTCCGTCTGTACCTA 60.181 52.174 19.49 0.00 42.62 3.08
572 579 4.680708 CGGTAGTACTCCGTCTGTACCTAA 60.681 50.000 19.49 0.00 42.62 2.69
573 580 5.186198 GGTAGTACTCCGTCTGTACCTAAA 58.814 45.833 0.00 0.00 40.61 1.85
574 581 5.825151 GGTAGTACTCCGTCTGTACCTAAAT 59.175 44.000 0.00 0.00 40.61 1.40
575 582 5.831702 AGTACTCCGTCTGTACCTAAATG 57.168 43.478 0.00 0.00 40.61 2.32
576 583 5.259632 AGTACTCCGTCTGTACCTAAATGT 58.740 41.667 0.00 0.00 40.61 2.71
577 584 6.418101 AGTACTCCGTCTGTACCTAAATGTA 58.582 40.000 0.00 0.00 40.61 2.29
578 585 6.886459 AGTACTCCGTCTGTACCTAAATGTAA 59.114 38.462 0.00 0.00 40.61 2.41
579 586 6.205101 ACTCCGTCTGTACCTAAATGTAAG 57.795 41.667 0.00 0.00 0.00 2.34
580 587 5.713861 ACTCCGTCTGTACCTAAATGTAAGT 59.286 40.000 0.00 0.00 0.00 2.24
581 588 6.127786 ACTCCGTCTGTACCTAAATGTAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
582 589 5.948162 TCCGTCTGTACCTAAATGTAAGTCT 59.052 40.000 0.00 0.00 0.00 3.24
583 590 6.435277 TCCGTCTGTACCTAAATGTAAGTCTT 59.565 38.462 0.00 0.00 0.00 3.01
584 591 7.039504 TCCGTCTGTACCTAAATGTAAGTCTTT 60.040 37.037 0.00 0.00 0.00 2.52
585 592 7.063074 CCGTCTGTACCTAAATGTAAGTCTTTG 59.937 40.741 0.00 0.00 0.00 2.77
586 593 7.597743 CGTCTGTACCTAAATGTAAGTCTTTGT 59.402 37.037 0.00 0.00 0.00 2.83
587 594 9.918630 GTCTGTACCTAAATGTAAGTCTTTGTA 57.081 33.333 0.00 0.00 0.00 2.41
636 643 8.621532 TGAAGCAAAATAAGTGAATCTACAGT 57.378 30.769 0.00 0.00 0.00 3.55
637 644 9.066892 TGAAGCAAAATAAGTGAATCTACAGTT 57.933 29.630 0.00 0.00 37.26 3.16
638 645 9.899226 GAAGCAAAATAAGTGAATCTACAGTTT 57.101 29.630 0.00 0.00 35.45 2.66
713 720 8.728337 AAAATATTTAGGAACGAAGGGAGTAC 57.272 34.615 0.01 0.00 0.00 2.73
714 721 7.672122 AATATTTAGGAACGAAGGGAGTACT 57.328 36.000 0.00 0.00 0.00 2.73
715 722 8.773033 AATATTTAGGAACGAAGGGAGTACTA 57.227 34.615 0.00 0.00 0.00 1.82
716 723 5.904362 TTTAGGAACGAAGGGAGTACTAC 57.096 43.478 0.00 0.00 0.00 2.73
717 724 3.735720 AGGAACGAAGGGAGTACTACT 57.264 47.619 4.77 0.00 0.00 2.57
718 725 3.354467 AGGAACGAAGGGAGTACTACTG 58.646 50.000 4.77 0.00 0.00 2.74
719 726 3.087781 GGAACGAAGGGAGTACTACTGT 58.912 50.000 4.77 0.00 0.00 3.55
720 727 4.018960 AGGAACGAAGGGAGTACTACTGTA 60.019 45.833 4.77 0.00 0.00 2.74
721 728 4.886489 GGAACGAAGGGAGTACTACTGTAT 59.114 45.833 4.77 0.00 0.00 2.29
722 729 5.359292 GGAACGAAGGGAGTACTACTGTATT 59.641 44.000 4.77 0.00 0.00 1.89
723 730 6.127507 GGAACGAAGGGAGTACTACTGTATTT 60.128 42.308 4.77 0.00 0.00 1.40
724 731 6.205101 ACGAAGGGAGTACTACTGTATTTG 57.795 41.667 4.77 2.45 0.00 2.32
725 732 5.713861 ACGAAGGGAGTACTACTGTATTTGT 59.286 40.000 4.77 3.03 0.00 2.83
726 733 6.127786 ACGAAGGGAGTACTACTGTATTTGTC 60.128 42.308 4.77 0.00 0.00 3.18
727 734 6.127814 CGAAGGGAGTACTACTGTATTTGTCA 60.128 42.308 4.77 0.00 0.00 3.58
728 735 7.549147 AAGGGAGTACTACTGTATTTGTCAA 57.451 36.000 4.77 0.00 0.00 3.18
735 742 8.954350 AGTACTACTGTATTTGTCAATCGTACT 58.046 33.333 0.00 0.00 0.00 2.73
762 769 4.948004 TCACTTGACACAGATACGGTATCT 59.052 41.667 21.95 21.95 46.06 1.98
817 824 2.538132 CGAATCGCAAATCCCCGTAAAC 60.538 50.000 0.00 0.00 0.00 2.01
912 921 1.041437 CCTTTTTACCGCAAACCCCA 58.959 50.000 0.00 0.00 0.00 4.96
954 963 4.379243 CTCCGCACACCCGAAGCT 62.379 66.667 0.00 0.00 0.00 3.74
955 964 4.680237 TCCGCACACCCGAAGCTG 62.680 66.667 0.00 0.00 0.00 4.24
996 1011 4.129148 GCATCCCCGCCTCCCTTT 62.129 66.667 0.00 0.00 0.00 3.11
1005 1020 2.280079 CCTCCCTTTCCCATGGCC 59.720 66.667 6.09 0.00 0.00 5.36
1019 1034 4.035102 GGCCTCCAAGAACGCCCT 62.035 66.667 0.00 0.00 35.23 5.19
1024 1039 3.121030 CCAAGAACGCCCTGCTCG 61.121 66.667 0.00 0.00 0.00 5.03
1025 1040 2.357517 CAAGAACGCCCTGCTCGT 60.358 61.111 0.00 0.00 42.54 4.18
1026 1041 2.048127 AAGAACGCCCTGCTCGTC 60.048 61.111 0.00 0.00 39.48 4.20
1027 1042 3.591254 AAGAACGCCCTGCTCGTCC 62.591 63.158 0.00 0.00 39.48 4.79
1045 1060 2.828145 GCCTCATCCTGCTCCTCC 59.172 66.667 0.00 0.00 0.00 4.30
1074 1089 3.213402 GCCTCGACCTCCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
1080 1095 1.891616 GACCTCCTCCTCGTCCAAC 59.108 63.158 0.00 0.00 0.00 3.77
1225 1240 2.101380 GCGTCTCCTGCGACTCTC 59.899 66.667 0.00 0.00 0.00 3.20
1227 1242 2.795297 GTCTCCTGCGACTCTCGG 59.205 66.667 0.00 0.00 40.84 4.63
1236 1251 2.039137 GACTCTCGGGGGAGGGTT 59.961 66.667 0.00 0.00 35.76 4.11
1323 1338 0.682209 GACTCACCGGGCTGTACCTA 60.682 60.000 6.32 0.00 39.10 3.08
1335 1350 3.427233 GGCTGTACCTACACTACAACGAG 60.427 52.174 0.00 0.00 34.51 4.18
1474 1489 6.318396 CCTCCAAGGTACTGTACTTACTACTC 59.682 46.154 16.79 0.00 40.86 2.59
1501 1530 4.998788 AGTTCTTCAGTTTTGAAAGTGGC 58.001 39.130 10.48 0.00 42.48 5.01
1555 1585 9.643693 ATTTGTAATCTGGCAAATCAGTTTTAG 57.356 29.630 0.00 0.00 40.10 1.85
1565 1595 6.349363 GGCAAATCAGTTTTAGTACTTCTGGG 60.349 42.308 0.00 0.00 0.00 4.45
1566 1596 6.206829 GCAAATCAGTTTTAGTACTTCTGGGT 59.793 38.462 0.00 0.00 0.00 4.51
1567 1597 7.389607 GCAAATCAGTTTTAGTACTTCTGGGTA 59.610 37.037 0.00 0.00 0.00 3.69
1568 1598 8.718734 CAAATCAGTTTTAGTACTTCTGGGTAC 58.281 37.037 0.00 0.00 41.47 3.34
1569 1599 6.017400 TCAGTTTTAGTACTTCTGGGTACG 57.983 41.667 0.00 0.00 44.59 3.67
1570 1600 5.536161 TCAGTTTTAGTACTTCTGGGTACGT 59.464 40.000 0.00 0.00 44.59 3.57
1571 1601 6.714810 TCAGTTTTAGTACTTCTGGGTACGTA 59.285 38.462 0.00 0.00 44.59 3.57
1598 1628 9.916397 GTACGTGTATTTCTTATCCTGAATTTG 57.084 33.333 0.00 0.00 0.00 2.32
1619 1649 4.432712 TGATGACATTCGGTACACATCTG 58.567 43.478 0.00 0.00 36.25 2.90
1649 1679 9.390795 CTCAGAATTTGAATTTGTCAAGTACAG 57.609 33.333 0.00 0.00 46.85 2.74
1653 1683 9.944663 GAATTTGAATTTGTCAAGTACAGTACA 57.055 29.630 13.37 0.00 46.85 2.90
1659 1689 9.730420 GAATTTGTCAAGTACAGTACATTTTGT 57.270 29.630 13.37 0.00 39.87 2.83
1662 1692 9.915629 TTTGTCAAGTACAGTACATTTTGTTTT 57.084 25.926 13.37 0.00 39.87 2.43
1663 1693 8.903570 TGTCAAGTACAGTACATTTTGTTTTG 57.096 30.769 13.37 6.18 33.01 2.44
1664 1694 8.516234 TGTCAAGTACAGTACATTTTGTTTTGT 58.484 29.630 13.37 0.00 33.01 2.83
1695 1725 2.121538 GCTCGCCCTCCCATTTTCC 61.122 63.158 0.00 0.00 0.00 3.13
1707 1737 2.618816 CCCATTTTCCTGTCTGCTGCTA 60.619 50.000 0.00 0.00 0.00 3.49
1709 1739 3.507233 CCATTTTCCTGTCTGCTGCTAAA 59.493 43.478 0.00 0.00 0.00 1.85
1874 1904 7.175641 AGCTCACAGTGGCCATTATAATTAATC 59.824 37.037 9.72 0.00 0.00 1.75
1956 1986 8.060931 TCAATTTGCAACAGTATAATGGCTAA 57.939 30.769 0.00 3.39 0.00 3.09
1962 1992 5.691754 GCAACAGTATAATGGCTAAAATGGC 59.308 40.000 5.03 0.00 0.00 4.40
2233 2263 1.904771 CTTGCCGGTATCCCACAGA 59.095 57.895 1.90 0.00 0.00 3.41
2294 2324 3.833070 AGTGTTCCTTCTGGTAGGTAGTG 59.167 47.826 0.00 0.00 36.63 2.74
2309 2339 4.134563 AGGTAGTGTTCAACAATGGTGTC 58.865 43.478 0.00 0.00 36.80 3.67
2314 2344 2.627221 TGTTCAACAATGGTGTCCATGG 59.373 45.455 4.97 4.97 44.40 3.66
2322 2352 4.837860 ACAATGGTGTCCATGGTTACAATT 59.162 37.500 12.58 13.64 45.11 2.32
2335 2365 3.366374 GGTTACAATTTCACTGCCTCTGC 60.366 47.826 0.00 0.00 38.26 4.26
2337 2367 1.610522 ACAATTTCACTGCCTCTGCAC 59.389 47.619 0.00 0.00 44.23 4.57
2339 2369 0.111061 ATTTCACTGCCTCTGCACCA 59.889 50.000 0.00 0.00 44.23 4.17
2340 2370 0.111061 TTTCACTGCCTCTGCACCAT 59.889 50.000 0.00 0.00 44.23 3.55
2341 2371 0.321919 TTCACTGCCTCTGCACCATC 60.322 55.000 0.00 0.00 44.23 3.51
2342 2372 1.196766 TCACTGCCTCTGCACCATCT 61.197 55.000 0.00 0.00 44.23 2.90
2343 2373 1.025113 CACTGCCTCTGCACCATCTG 61.025 60.000 0.00 0.00 44.23 2.90
2344 2374 1.196766 ACTGCCTCTGCACCATCTGA 61.197 55.000 0.00 0.00 44.23 3.27
2346 2376 0.622136 TGCCTCTGCACCATCTGAAT 59.378 50.000 0.00 0.00 44.23 2.57
2348 2378 1.404391 GCCTCTGCACCATCTGAATTG 59.596 52.381 0.00 0.00 37.47 2.32
2533 2571 4.298332 CACAGCAAACTCCACAAAATACC 58.702 43.478 0.00 0.00 0.00 2.73
2617 2655 3.575965 GTTCTTGCCGGAACAATCATT 57.424 42.857 5.05 0.00 43.40 2.57
2815 2853 0.611062 ACACTTCGTCGGAGGGATCA 60.611 55.000 10.54 0.00 0.00 2.92
2869 2907 2.496070 CCCGAGTGTGAGGTTCAATCTA 59.504 50.000 0.00 0.00 0.00 1.98
3004 3042 0.879765 GCATCAACAAGAGCAGCTGT 59.120 50.000 16.64 0.00 0.00 4.40
3041 3079 0.606401 CTTCTTGAAAGGGCTCCGCA 60.606 55.000 0.00 0.00 0.00 5.69
3100 3138 4.699522 GGTTTCTGCCGCTCCCGT 62.700 66.667 0.00 0.00 0.00 5.28
3228 3266 1.407936 ACTCGGGTCTCCATCATCAG 58.592 55.000 0.00 0.00 0.00 2.90
3229 3267 0.033228 CTCGGGTCTCCATCATCAGC 59.967 60.000 0.00 0.00 0.00 4.26
3299 3339 6.599638 ACATGAAATAGACAGCCTAAGTTTCC 59.400 38.462 0.00 0.00 30.65 3.13
3302 3342 0.613777 AGACAGCCTAAGTTTCCGGG 59.386 55.000 0.00 0.00 0.00 5.73
3309 3349 0.250989 CTAAGTTTCCGGGGCCAACA 60.251 55.000 4.39 0.00 0.00 3.33
3316 3356 0.760945 TCCGGGGCCAACATTTTTGT 60.761 50.000 4.39 0.00 0.00 2.83
3342 3382 6.072728 TGTTGTTGCCAGTAATACTTAAGCTG 60.073 38.462 1.29 1.30 0.00 4.24
3349 3389 6.422223 CCAGTAATACTTAAGCTGCATTTCG 58.578 40.000 1.29 0.00 0.00 3.46
3369 3409 8.855279 CATTTCGTGAAAGTGAACAAACTAAAA 58.145 29.630 1.20 0.00 33.32 1.52
3373 3441 7.008810 TCGTGAAAGTGAACAAACTAAAATTGC 59.991 33.333 0.00 0.00 0.00 3.56
3376 3444 7.277539 TGAAAGTGAACAAACTAAAATTGCTGG 59.722 33.333 0.00 0.00 0.00 4.85
3384 3452 4.206477 ACTAAAATTGCTGGGCCATTTC 57.794 40.909 6.72 0.00 33.73 2.17
3425 3493 5.031578 GTGATTAGTTCTACTCTCTGCACG 58.968 45.833 0.00 0.00 0.00 5.34
3427 3495 5.878669 TGATTAGTTCTACTCTCTGCACGTA 59.121 40.000 0.00 0.00 0.00 3.57
3718 3786 1.227527 CGTGTTCCAGGTGCTCACA 60.228 57.895 2.21 0.00 0.00 3.58
3721 3789 1.968540 GTTCCAGGTGCTCACAGGC 60.969 63.158 2.21 0.00 0.00 4.85
3919 3987 2.045045 GCCATGGCCACTGTGCTA 60.045 61.111 27.24 0.00 34.56 3.49
3960 4035 2.094182 AGTAATGAGTGATCGTTGCCGT 60.094 45.455 0.00 0.00 35.01 5.68
3964 4039 2.202171 GTGATCGTTGCCGTTGCG 60.202 61.111 0.00 0.00 41.78 4.85
3980 4055 4.495184 CCGTTGCGTTAACTTCTTTCTTGT 60.495 41.667 3.71 0.00 37.13 3.16
4000 4075 4.078537 TGTTAGCTAAGCTGCCATTTTCA 58.921 39.130 6.38 0.00 40.10 2.69
4003 4078 4.382345 AGCTAAGCTGCCATTTTCATTC 57.618 40.909 0.00 0.00 37.57 2.67
4101 4176 3.804873 GCTCTATGCAGTTAGCCAGTTAC 59.195 47.826 5.82 0.00 44.83 2.50
4107 4182 5.578005 TGCAGTTAGCCAGTTACTACTAG 57.422 43.478 0.00 0.00 44.83 2.57
4199 4274 7.525688 TCACTGATTGTATCGTCATCTTTTC 57.474 36.000 0.00 0.00 0.00 2.29
4239 4314 1.227823 GGTGTGGTGTGCTGCTACA 60.228 57.895 0.00 0.83 0.00 2.74
4243 4318 2.034558 GTGTGGTGTGCTGCTACATTTT 59.965 45.455 0.00 0.00 32.43 1.82
4422 4506 0.686112 GTCCTCCTCTGACCTCTGGG 60.686 65.000 0.00 0.00 38.88 4.45
4439 4523 4.479993 GCTCTGCTCCGGTGCCAT 62.480 66.667 24.73 0.00 0.00 4.40
4440 4524 2.513204 CTCTGCTCCGGTGCCATG 60.513 66.667 24.73 14.87 0.00 3.66
4441 4525 3.320879 CTCTGCTCCGGTGCCATGT 62.321 63.158 24.73 0.00 0.00 3.21
4518 4605 1.296715 CAGCACCACTACCACCTCC 59.703 63.158 0.00 0.00 0.00 4.30
4520 4607 0.473886 AGCACCACTACCACCTCCTT 60.474 55.000 0.00 0.00 0.00 3.36
4521 4608 0.036294 GCACCACTACCACCTCCTTC 60.036 60.000 0.00 0.00 0.00 3.46
4522 4609 0.613777 CACCACTACCACCTCCTTCC 59.386 60.000 0.00 0.00 0.00 3.46
4561 4648 1.068281 GAGGCGCTTCAGATCAGATCA 59.932 52.381 15.47 0.00 0.00 2.92
4585 4672 4.095782 GGCATTAAAACGTGGCTTCAGATA 59.904 41.667 0.00 0.00 37.85 1.98
4614 4701 4.215613 CCTGTTACTTTTGCTTCAGGGTAC 59.784 45.833 0.00 0.00 38.81 3.34
4615 4702 4.783055 TGTTACTTTTGCTTCAGGGTACA 58.217 39.130 0.00 0.00 0.00 2.90
4616 4703 4.819630 TGTTACTTTTGCTTCAGGGTACAG 59.180 41.667 0.00 0.00 0.00 2.74
4617 4704 2.863809 ACTTTTGCTTCAGGGTACAGG 58.136 47.619 0.00 0.00 0.00 4.00
4618 4705 2.162681 CTTTTGCTTCAGGGTACAGGG 58.837 52.381 0.00 0.00 0.00 4.45
4619 4706 1.145571 TTTGCTTCAGGGTACAGGGT 58.854 50.000 0.00 0.00 0.00 4.34
4620 4707 2.032965 TTGCTTCAGGGTACAGGGTA 57.967 50.000 0.00 0.00 0.00 3.69
4712 4799 4.096984 GCAGGGAGAACATATCCTTTTGTG 59.903 45.833 0.00 0.00 37.01 3.33
4717 4804 6.094186 GGGAGAACATATCCTTTTGTGAGAAC 59.906 42.308 0.00 0.00 37.01 3.01
4745 4832 3.818121 TTGGCACCCAAGACGGACG 62.818 63.158 0.00 0.00 38.75 4.79
4774 4861 1.134068 GCCTCAAGGTAATCAGACCCC 60.134 57.143 0.00 0.00 40.74 4.95
4775 4862 2.482494 CCTCAAGGTAATCAGACCCCT 58.518 52.381 0.00 0.00 40.74 4.79
4776 4863 2.171448 CCTCAAGGTAATCAGACCCCTG 59.829 54.545 0.00 0.00 40.74 4.45
4804 4893 7.665080 GAAAATATCCAGAAAAACGAATCCG 57.335 36.000 0.00 0.00 42.50 4.18
4805 4894 4.813296 ATATCCAGAAAAACGAATCCGC 57.187 40.909 0.00 0.00 39.95 5.54
4806 4895 2.178912 TCCAGAAAAACGAATCCGCT 57.821 45.000 0.00 0.00 39.95 5.52
4807 4896 2.073816 TCCAGAAAAACGAATCCGCTC 58.926 47.619 0.00 0.00 39.95 5.03
4808 4897 1.201921 CCAGAAAAACGAATCCGCTCG 60.202 52.381 0.00 0.00 44.50 5.03
4809 4898 1.724623 CAGAAAAACGAATCCGCTCGA 59.275 47.619 0.00 0.00 41.44 4.04
4810 4899 2.156891 CAGAAAAACGAATCCGCTCGAA 59.843 45.455 0.00 0.00 41.44 3.71
4811 4900 2.157085 AGAAAAACGAATCCGCTCGAAC 59.843 45.455 0.00 0.00 41.44 3.95
4812 4901 1.792006 AAAACGAATCCGCTCGAACT 58.208 45.000 0.00 0.00 41.44 3.01
4813 4902 1.347320 AAACGAATCCGCTCGAACTC 58.653 50.000 0.00 0.00 41.44 3.01
4814 4903 0.458025 AACGAATCCGCTCGAACTCC 60.458 55.000 0.00 0.00 41.44 3.85
4815 4904 1.589196 CGAATCCGCTCGAACTCCC 60.589 63.158 0.00 0.00 41.44 4.30
4816 4905 1.817209 GAATCCGCTCGAACTCCCT 59.183 57.895 0.00 0.00 0.00 4.20
4817 4906 0.528684 GAATCCGCTCGAACTCCCTG 60.529 60.000 0.00 0.00 0.00 4.45
4818 4907 1.961180 AATCCGCTCGAACTCCCTGG 61.961 60.000 0.00 0.00 0.00 4.45
4819 4908 4.821589 CCGCTCGAACTCCCTGGC 62.822 72.222 0.00 0.00 0.00 4.85
4820 4909 3.764466 CGCTCGAACTCCCTGGCT 61.764 66.667 0.00 0.00 0.00 4.75
4821 4910 2.185608 GCTCGAACTCCCTGGCTC 59.814 66.667 0.00 0.00 0.00 4.70
4822 4911 2.896443 CTCGAACTCCCTGGCTCC 59.104 66.667 0.00 0.00 0.00 4.70
4823 4912 1.684049 CTCGAACTCCCTGGCTCCT 60.684 63.158 0.00 0.00 0.00 3.69
4824 4913 1.671901 CTCGAACTCCCTGGCTCCTC 61.672 65.000 0.00 0.00 0.00 3.71
4825 4914 1.984570 CGAACTCCCTGGCTCCTCA 60.985 63.158 0.00 0.00 0.00 3.86
4826 4915 1.904032 GAACTCCCTGGCTCCTCAG 59.096 63.158 0.00 0.00 34.70 3.35
4827 4916 2.250741 GAACTCCCTGGCTCCTCAGC 62.251 65.000 0.00 0.00 46.06 4.26
4835 4924 3.819188 GCTCCTCAGCGATTTGGG 58.181 61.111 0.00 0.00 35.39 4.12
4836 4925 2.476320 GCTCCTCAGCGATTTGGGC 61.476 63.158 0.00 0.00 35.39 5.36
4837 4926 1.821332 CTCCTCAGCGATTTGGGCC 60.821 63.158 0.00 0.00 0.00 5.80
4838 4927 2.262774 CTCCTCAGCGATTTGGGCCT 62.263 60.000 4.53 0.00 0.00 5.19
4839 4928 1.821332 CCTCAGCGATTTGGGCCTC 60.821 63.158 4.53 0.00 0.00 4.70
4840 4929 1.821332 CTCAGCGATTTGGGCCTCC 60.821 63.158 4.53 0.00 0.00 4.30
4841 4930 2.262774 CTCAGCGATTTGGGCCTCCT 62.263 60.000 4.53 0.00 0.00 3.69
4842 4931 2.117156 CAGCGATTTGGGCCTCCTG 61.117 63.158 4.53 0.56 0.00 3.86
4843 4932 2.830370 GCGATTTGGGCCTCCTGG 60.830 66.667 4.53 0.00 0.00 4.45
4853 4942 3.917760 CCTCCTGGCCGTCCGATC 61.918 72.222 0.00 0.00 34.14 3.69
4854 4943 4.271816 CTCCTGGCCGTCCGATCG 62.272 72.222 8.51 8.51 34.14 3.69
4861 4950 4.189188 CCGTCCGATCGGTTCGCT 62.189 66.667 31.90 0.00 46.71 4.93
4862 4951 2.202570 CGTCCGATCGGTTCGCTT 60.203 61.111 32.15 0.00 46.71 4.68
4863 4952 2.505498 CGTCCGATCGGTTCGCTTG 61.505 63.158 32.15 12.25 46.71 4.01
4864 4953 1.153901 GTCCGATCGGTTCGCTTGA 60.154 57.895 32.15 9.00 46.71 3.02
4865 4954 0.527817 GTCCGATCGGTTCGCTTGAT 60.528 55.000 32.15 0.00 46.71 2.57
4866 4955 0.527600 TCCGATCGGTTCGCTTGATG 60.528 55.000 32.15 3.63 46.71 3.07
4867 4956 1.490693 CCGATCGGTTCGCTTGATGG 61.491 60.000 26.35 0.00 46.71 3.51
4868 4957 0.527600 CGATCGGTTCGCTTGATGGA 60.528 55.000 7.38 0.00 41.69 3.41
4869 4958 1.212616 GATCGGTTCGCTTGATGGAG 58.787 55.000 0.00 0.00 0.00 3.86
4870 4959 0.537188 ATCGGTTCGCTTGATGGAGT 59.463 50.000 0.00 0.00 0.00 3.85
4871 4960 0.320374 TCGGTTCGCTTGATGGAGTT 59.680 50.000 0.00 0.00 0.00 3.01
4872 4961 0.721718 CGGTTCGCTTGATGGAGTTC 59.278 55.000 0.00 0.00 0.00 3.01
4873 4962 1.087501 GGTTCGCTTGATGGAGTTCC 58.912 55.000 0.00 0.00 0.00 3.62
4874 4963 0.721718 GTTCGCTTGATGGAGTTCCG 59.278 55.000 0.00 0.00 39.43 4.30
4875 4964 0.391130 TTCGCTTGATGGAGTTCCGG 60.391 55.000 0.00 0.00 39.43 5.14
4876 4965 2.464459 CGCTTGATGGAGTTCCGGC 61.464 63.158 0.00 0.00 39.43 6.13
4877 4966 2.115291 GCTTGATGGAGTTCCGGCC 61.115 63.158 0.00 0.00 39.43 6.13
4878 4967 1.815421 CTTGATGGAGTTCCGGCCG 60.815 63.158 21.04 21.04 39.43 6.13
4879 4968 2.521958 CTTGATGGAGTTCCGGCCGT 62.522 60.000 26.12 4.65 39.43 5.68
4880 4969 2.202892 GATGGAGTTCCGGCCGTC 60.203 66.667 26.12 14.98 39.43 4.79
4881 4970 4.143333 ATGGAGTTCCGGCCGTCG 62.143 66.667 26.12 10.11 39.43 5.12
4906 4995 4.933064 CCGCCGGCAGATCTCGTC 62.933 72.222 28.98 0.00 0.00 4.20
4907 4996 4.933064 CGCCGGCAGATCTCGTCC 62.933 72.222 28.98 0.00 0.00 4.79
4908 4997 4.933064 GCCGGCAGATCTCGTCCG 62.933 72.222 24.80 16.56 41.41 4.79
4909 4998 3.518998 CCGGCAGATCTCGTCCGT 61.519 66.667 19.94 0.00 40.23 4.69
4910 4999 2.024871 CGGCAGATCTCGTCCGTC 59.975 66.667 15.69 0.00 37.33 4.79
4911 5000 2.024871 GGCAGATCTCGTCCGTCG 59.975 66.667 0.00 0.00 41.41 5.12
4912 5001 2.024871 GCAGATCTCGTCCGTCGG 59.975 66.667 4.39 4.39 40.32 4.79
4913 5002 2.470362 GCAGATCTCGTCCGTCGGA 61.470 63.158 10.71 10.71 40.32 4.55
4914 5003 1.787057 GCAGATCTCGTCCGTCGGAT 61.787 60.000 18.75 0.00 40.32 4.18
4915 5004 0.236187 CAGATCTCGTCCGTCGGATC 59.764 60.000 18.75 10.50 41.69 3.36
4916 5005 1.204563 GATCTCGTCCGTCGGATCG 59.795 63.158 18.75 20.96 36.93 3.69
4917 5006 1.220169 GATCTCGTCCGTCGGATCGA 61.220 60.000 26.21 26.21 36.93 3.59
4918 5007 0.812811 ATCTCGTCCGTCGGATCGAA 60.813 55.000 27.08 20.92 37.72 3.71
4919 5008 0.812811 TCTCGTCCGTCGGATCGAAT 60.813 55.000 27.08 0.00 37.72 3.34
4920 5009 0.384477 CTCGTCCGTCGGATCGAATC 60.384 60.000 27.08 12.06 37.72 2.52
4921 5010 1.370172 CGTCCGTCGGATCGAATCC 60.370 63.158 18.75 1.17 46.22 3.01
4928 5017 3.484793 GGATCGAATCCCCCTCCC 58.515 66.667 0.00 0.00 43.88 4.30
4929 5018 2.224877 GGATCGAATCCCCCTCCCC 61.225 68.421 0.00 0.00 43.88 4.81
4930 5019 1.152008 GATCGAATCCCCCTCCCCT 60.152 63.158 0.00 0.00 0.00 4.79
4931 5020 1.462238 ATCGAATCCCCCTCCCCTG 60.462 63.158 0.00 0.00 0.00 4.45
4932 5021 2.271493 ATCGAATCCCCCTCCCCTGT 62.271 60.000 0.00 0.00 0.00 4.00
4933 5022 1.074775 CGAATCCCCCTCCCCTGTA 60.075 63.158 0.00 0.00 0.00 2.74
4934 5023 1.122019 CGAATCCCCCTCCCCTGTAG 61.122 65.000 0.00 0.00 0.00 2.74
4935 5024 1.386057 AATCCCCCTCCCCTGTAGC 60.386 63.158 0.00 0.00 0.00 3.58
4936 5025 2.208562 AATCCCCCTCCCCTGTAGCA 62.209 60.000 0.00 0.00 0.00 3.49
4937 5026 1.990370 ATCCCCCTCCCCTGTAGCAT 61.990 60.000 0.00 0.00 0.00 3.79
4938 5027 2.455565 CCCCCTCCCCTGTAGCATG 61.456 68.421 0.00 0.00 0.00 4.06
4939 5028 2.455565 CCCCTCCCCTGTAGCATGG 61.456 68.421 0.00 0.00 0.00 3.66
4940 5029 1.694169 CCCTCCCCTGTAGCATGGT 60.694 63.158 1.62 1.62 0.00 3.55
4941 5030 1.281925 CCCTCCCCTGTAGCATGGTT 61.282 60.000 1.12 0.00 0.00 3.67
4942 5031 0.107017 CCTCCCCTGTAGCATGGTTG 60.107 60.000 1.12 0.00 0.00 3.77
4943 5032 0.911769 CTCCCCTGTAGCATGGTTGA 59.088 55.000 1.12 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 2.360483 ACATCTCGCGAGAATGTGATCT 59.640 45.455 39.43 19.95 41.36 2.75
85 86 0.861866 CCGCACGTAGACACATCTCG 60.862 60.000 0.00 0.00 36.29 4.04
92 93 1.466025 AAACCTCCCGCACGTAGACA 61.466 55.000 0.00 0.00 0.00 3.41
166 167 1.271163 ACCACCACTCGGTAAATGTGG 60.271 52.381 9.50 9.50 46.94 4.17
170 171 0.616891 GGGACCACCACTCGGTAAAT 59.383 55.000 0.00 0.00 46.94 1.40
187 188 1.202770 AGAACCTCGTCCTTTGTTGGG 60.203 52.381 0.00 0.00 0.00 4.12
208 209 4.657436 AAACCACAACGAATTTTGCCTA 57.343 36.364 0.00 0.00 0.00 3.93
209 210 3.535280 AAACCACAACGAATTTTGCCT 57.465 38.095 0.00 0.00 0.00 4.75
222 223 2.093394 TCACGAAGGAGTCAAAACCACA 60.093 45.455 0.00 0.00 0.00 4.17
276 283 2.353803 GCACTCTATTGAACACCCTCGT 60.354 50.000 0.00 0.00 0.00 4.18
298 305 0.179119 CTCGGGCGTCCTTTAATCGT 60.179 55.000 3.66 0.00 0.00 3.73
303 310 1.375013 GTTGCTCGGGCGTCCTTTA 60.375 57.895 3.66 0.00 42.25 1.85
325 332 1.159285 CTCCGAAAGCACAAGCATCA 58.841 50.000 0.00 0.00 45.49 3.07
328 335 1.270785 TGATCTCCGAAAGCACAAGCA 60.271 47.619 0.00 0.00 45.49 3.91
349 356 1.142748 CCAGTGAGCGATCACTCCC 59.857 63.158 32.02 7.15 46.96 4.30
356 363 3.895232 ACATCTAAACCAGTGAGCGAT 57.105 42.857 0.00 0.00 0.00 4.58
362 369 3.452627 AGCCTCCTACATCTAAACCAGTG 59.547 47.826 0.00 0.00 0.00 3.66
363 370 3.725634 AGCCTCCTACATCTAAACCAGT 58.274 45.455 0.00 0.00 0.00 4.00
368 375 6.625267 AGGATCTAAGCCTCCTACATCTAAA 58.375 40.000 0.00 0.00 40.15 1.85
373 380 5.430089 ACAAAAGGATCTAAGCCTCCTACAT 59.570 40.000 0.00 0.00 41.09 2.29
405 412 4.704457 ACACCGAAACGAATACAAAATCG 58.296 39.130 0.00 0.00 44.33 3.34
415 422 1.451067 AACACCAACACCGAAACGAA 58.549 45.000 0.00 0.00 0.00 3.85
418 425 2.095161 TGACAAACACCAACACCGAAAC 60.095 45.455 0.00 0.00 0.00 2.78
533 540 3.676646 ACTACCGTACTTCAAATTGCGTC 59.323 43.478 0.00 0.00 0.00 5.19
557 564 6.095160 AGACTTACATTTAGGTACAGACGGAG 59.905 42.308 0.00 0.00 0.00 4.63
558 565 5.948162 AGACTTACATTTAGGTACAGACGGA 59.052 40.000 0.00 0.00 0.00 4.69
559 566 6.205101 AGACTTACATTTAGGTACAGACGG 57.795 41.667 0.00 0.00 0.00 4.79
560 567 7.597743 ACAAAGACTTACATTTAGGTACAGACG 59.402 37.037 0.00 0.00 0.00 4.18
561 568 8.828688 ACAAAGACTTACATTTAGGTACAGAC 57.171 34.615 0.00 0.00 0.00 3.51
610 617 9.236006 ACTGTAGATTCACTTATTTTGCTTCAT 57.764 29.630 0.00 0.00 0.00 2.57
611 618 8.621532 ACTGTAGATTCACTTATTTTGCTTCA 57.378 30.769 0.00 0.00 0.00 3.02
612 619 9.899226 AAACTGTAGATTCACTTATTTTGCTTC 57.101 29.630 0.00 0.00 0.00 3.86
687 694 9.170734 GTACTCCCTTCGTTCCTAAATATTTTT 57.829 33.333 5.91 0.00 0.00 1.94
688 695 8.546322 AGTACTCCCTTCGTTCCTAAATATTTT 58.454 33.333 5.91 0.00 0.00 1.82
689 696 8.087303 AGTACTCCCTTCGTTCCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
690 697 7.672122 AGTACTCCCTTCGTTCCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
691 698 8.003629 AGTAGTACTCCCTTCGTTCCTAAATAT 58.996 37.037 0.00 0.00 0.00 1.28
692 699 7.284034 CAGTAGTACTCCCTTCGTTCCTAAATA 59.716 40.741 0.00 0.00 0.00 1.40
693 700 6.096564 CAGTAGTACTCCCTTCGTTCCTAAAT 59.903 42.308 0.00 0.00 0.00 1.40
694 701 5.416952 CAGTAGTACTCCCTTCGTTCCTAAA 59.583 44.000 0.00 0.00 0.00 1.85
695 702 4.946157 CAGTAGTACTCCCTTCGTTCCTAA 59.054 45.833 0.00 0.00 0.00 2.69
696 703 4.018960 ACAGTAGTACTCCCTTCGTTCCTA 60.019 45.833 0.00 0.00 0.00 2.94
697 704 3.245193 ACAGTAGTACTCCCTTCGTTCCT 60.245 47.826 0.00 0.00 0.00 3.36
698 705 3.087781 ACAGTAGTACTCCCTTCGTTCC 58.912 50.000 0.00 0.00 0.00 3.62
699 706 6.448207 AATACAGTAGTACTCCCTTCGTTC 57.552 41.667 0.00 0.00 31.96 3.95
700 707 6.210185 ACAAATACAGTAGTACTCCCTTCGTT 59.790 38.462 0.00 0.00 31.96 3.85
701 708 5.713861 ACAAATACAGTAGTACTCCCTTCGT 59.286 40.000 0.00 0.00 31.96 3.85
702 709 6.127814 TGACAAATACAGTAGTACTCCCTTCG 60.128 42.308 0.00 0.00 31.96 3.79
703 710 7.166691 TGACAAATACAGTAGTACTCCCTTC 57.833 40.000 0.00 0.00 31.96 3.46
704 711 7.549147 TTGACAAATACAGTAGTACTCCCTT 57.451 36.000 0.00 0.00 31.96 3.95
705 712 7.416438 CGATTGACAAATACAGTAGTACTCCCT 60.416 40.741 0.00 0.00 31.96 4.20
706 713 6.696148 CGATTGACAAATACAGTAGTACTCCC 59.304 42.308 0.00 0.00 31.96 4.30
707 714 7.256286 ACGATTGACAAATACAGTAGTACTCC 58.744 38.462 0.00 0.00 31.96 3.85
708 715 9.219497 GTACGATTGACAAATACAGTAGTACTC 57.781 37.037 0.00 0.00 35.28 2.59
709 716 8.954350 AGTACGATTGACAAATACAGTAGTACT 58.046 33.333 0.00 0.00 39.44 2.73
710 717 9.007252 CAGTACGATTGACAAATACAGTAGTAC 57.993 37.037 0.00 0.00 36.84 2.73
711 718 8.949177 TCAGTACGATTGACAAATACAGTAGTA 58.051 33.333 0.00 0.00 34.10 1.82
712 719 7.754027 GTCAGTACGATTGACAAATACAGTAGT 59.246 37.037 8.45 0.00 43.41 2.73
713 720 7.968956 AGTCAGTACGATTGACAAATACAGTAG 59.031 37.037 14.17 0.00 45.72 2.57
714 721 7.823665 AGTCAGTACGATTGACAAATACAGTA 58.176 34.615 14.17 0.00 45.72 2.74
715 722 6.688578 AGTCAGTACGATTGACAAATACAGT 58.311 36.000 14.17 0.00 45.72 3.55
716 723 6.806739 TGAGTCAGTACGATTGACAAATACAG 59.193 38.462 14.17 0.00 45.72 2.74
717 724 6.584942 GTGAGTCAGTACGATTGACAAATACA 59.415 38.462 14.17 5.53 45.72 2.29
718 725 6.807230 AGTGAGTCAGTACGATTGACAAATAC 59.193 38.462 14.17 8.23 45.72 1.89
719 726 6.920817 AGTGAGTCAGTACGATTGACAAATA 58.079 36.000 14.17 0.00 45.72 1.40
720 727 5.784177 AGTGAGTCAGTACGATTGACAAAT 58.216 37.500 14.17 1.60 45.72 2.32
721 728 5.196341 AGTGAGTCAGTACGATTGACAAA 57.804 39.130 14.17 1.79 45.72 2.83
722 729 4.848562 AGTGAGTCAGTACGATTGACAA 57.151 40.909 14.17 0.00 45.72 3.18
723 730 4.277423 TCAAGTGAGTCAGTACGATTGACA 59.723 41.667 14.17 0.00 45.72 3.58
724 731 4.617645 GTCAAGTGAGTCAGTACGATTGAC 59.382 45.833 11.93 11.93 44.09 3.18
725 732 4.277423 TGTCAAGTGAGTCAGTACGATTGA 59.723 41.667 0.00 0.00 0.00 2.57
726 733 4.383052 GTGTCAAGTGAGTCAGTACGATTG 59.617 45.833 0.00 0.00 0.00 2.67
727 734 4.037565 TGTGTCAAGTGAGTCAGTACGATT 59.962 41.667 0.00 0.00 0.00 3.34
728 735 3.568430 TGTGTCAAGTGAGTCAGTACGAT 59.432 43.478 0.00 0.00 0.00 3.73
735 742 3.057526 CCGTATCTGTGTCAAGTGAGTCA 60.058 47.826 0.00 0.00 0.00 3.41
762 769 1.601703 CCACGTGTGGGATGGATCA 59.398 57.895 15.65 0.00 46.81 2.92
799 806 1.385528 GGTTTACGGGGATTTGCGAT 58.614 50.000 0.00 0.00 0.00 4.58
912 921 4.286707 GTTGGAATTTGGGGGCTTATAGT 58.713 43.478 0.00 0.00 0.00 2.12
953 962 2.878580 CAGAGAACAGCAGAGTAGCAG 58.121 52.381 0.00 0.00 36.85 4.24
954 963 1.067283 GCAGAGAACAGCAGAGTAGCA 60.067 52.381 0.00 0.00 36.85 3.49
955 964 1.639280 GCAGAGAACAGCAGAGTAGC 58.361 55.000 0.00 0.00 0.00 3.58
981 994 3.097162 GGAAAGGGAGGCGGGGAT 61.097 66.667 0.00 0.00 0.00 3.85
984 997 3.420482 ATGGGAAAGGGAGGCGGG 61.420 66.667 0.00 0.00 0.00 6.13
993 1008 0.332632 TCTTGGAGGCCATGGGAAAG 59.667 55.000 15.13 0.00 31.53 2.62
996 1011 1.691219 GTTCTTGGAGGCCATGGGA 59.309 57.895 15.13 0.00 31.53 4.37
1005 1020 1.743252 GAGCAGGGCGTTCTTGGAG 60.743 63.158 0.00 0.00 0.00 3.86
1019 1034 3.838271 GGATGAGGCGGACGAGCA 61.838 66.667 0.00 0.00 39.27 4.26
1024 1039 2.107953 GAGCAGGATGAGGCGGAC 59.892 66.667 0.00 0.00 39.69 4.79
1025 1040 3.157252 GGAGCAGGATGAGGCGGA 61.157 66.667 0.00 0.00 39.69 5.54
1026 1041 3.160047 AGGAGCAGGATGAGGCGG 61.160 66.667 0.00 0.00 39.69 6.13
1027 1042 2.420890 GAGGAGCAGGATGAGGCG 59.579 66.667 0.00 0.00 39.69 5.52
1028 1043 1.757423 GAGGAGGAGCAGGATGAGGC 61.757 65.000 0.00 0.00 39.69 4.70
1029 1044 1.462731 CGAGGAGGAGCAGGATGAGG 61.463 65.000 0.00 0.00 39.69 3.86
1030 1045 2.040330 CGAGGAGGAGCAGGATGAG 58.960 63.158 0.00 0.00 39.69 2.90
1031 1046 2.130426 GCGAGGAGGAGCAGGATGA 61.130 63.158 0.00 0.00 39.69 2.92
1032 1047 2.420890 GCGAGGAGGAGCAGGATG 59.579 66.667 0.00 0.00 40.87 3.51
1074 1089 2.700773 GGCATTGCCGGAGTTGGAC 61.701 63.158 12.82 0.00 39.62 4.02
1222 1237 2.285144 GGAAACCCTCCCCCGAGA 60.285 66.667 0.00 0.00 38.52 4.04
1225 1240 4.091939 GACGGAAACCCTCCCCCG 62.092 72.222 0.00 0.00 46.65 5.73
1227 1242 3.306595 GACGACGGAAACCCTCCCC 62.307 68.421 0.00 0.00 41.87 4.81
1236 1251 2.599281 TGCAGGGAGACGACGGAA 60.599 61.111 0.00 0.00 0.00 4.30
1323 1338 1.004918 GCCCAGCTCGTTGTAGTGT 60.005 57.895 0.00 0.00 0.00 3.55
1474 1489 4.536364 TTCAAAACTGAAGAACTCGCTG 57.464 40.909 0.00 0.00 0.00 5.18
1518 1548 9.800433 TTGCCAGATTACAAATATAACAATGTG 57.200 29.630 0.00 0.00 0.00 3.21
1538 1568 7.301054 CAGAAGTACTAAAACTGATTTGCCAG 58.699 38.462 0.00 0.00 39.93 4.85
1554 1584 4.184629 CGTACTACGTACCCAGAAGTACT 58.815 47.826 16.39 0.00 40.09 2.73
1555 1585 4.522297 CGTACTACGTACCCAGAAGTAC 57.478 50.000 10.98 10.98 39.28 2.73
1569 1599 9.962783 ATTCAGGATAAGAAATACACGTACTAC 57.037 33.333 0.00 0.00 0.00 2.73
1571 1601 9.886132 AAATTCAGGATAAGAAATACACGTACT 57.114 29.630 0.00 0.00 0.00 2.73
1586 1616 6.356556 ACCGAATGTCATCAAATTCAGGATA 58.643 36.000 10.86 0.00 33.99 2.59
1598 1628 3.804325 CCAGATGTGTACCGAATGTCATC 59.196 47.826 0.00 0.00 34.00 2.92
1619 1649 8.352942 ACTTGACAAATTCAAATTCTGAGTACC 58.647 33.333 0.00 0.00 43.90 3.34
1640 1670 9.915629 AAACAAAACAAAATGTACTGTACTTGA 57.084 25.926 19.22 2.95 28.84 3.02
1649 1679 8.927721 ACCAGTACAAAACAAAACAAAATGTAC 58.072 29.630 0.00 0.00 41.01 2.90
1651 1681 7.095017 CCACCAGTACAAAACAAAACAAAATGT 60.095 33.333 0.00 0.00 0.00 2.71
1652 1682 7.239972 CCACCAGTACAAAACAAAACAAAATG 58.760 34.615 0.00 0.00 0.00 2.32
1653 1683 6.128145 GCCACCAGTACAAAACAAAACAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
1654 1684 5.179555 GCCACCAGTACAAAACAAAACAAAA 59.820 36.000 0.00 0.00 0.00 2.44
1659 1689 3.181495 CGAGCCACCAGTACAAAACAAAA 60.181 43.478 0.00 0.00 0.00 2.44
1660 1690 2.356382 CGAGCCACCAGTACAAAACAAA 59.644 45.455 0.00 0.00 0.00 2.83
1661 1691 1.944024 CGAGCCACCAGTACAAAACAA 59.056 47.619 0.00 0.00 0.00 2.83
1662 1692 1.588674 CGAGCCACCAGTACAAAACA 58.411 50.000 0.00 0.00 0.00 2.83
1663 1693 0.237498 GCGAGCCACCAGTACAAAAC 59.763 55.000 0.00 0.00 0.00 2.43
1664 1694 0.887387 GGCGAGCCACCAGTACAAAA 60.887 55.000 9.58 0.00 35.81 2.44
1695 1725 2.611292 GCAGGTATTTAGCAGCAGACAG 59.389 50.000 0.00 0.00 36.42 3.51
1707 1737 4.159557 AGTTTTGGTCCATGCAGGTATTT 58.840 39.130 0.00 0.00 39.02 1.40
1709 1739 3.456380 AGTTTTGGTCCATGCAGGTAT 57.544 42.857 0.00 0.00 39.02 2.73
1874 1904 3.641434 AATCCTGGAAGTGGACAGATG 57.359 47.619 0.00 0.00 36.86 2.90
1956 1986 6.825721 AGAGAAGAACAATCGATTAGCCATTT 59.174 34.615 10.97 1.29 0.00 2.32
1962 1992 8.879342 ACCATTAGAGAAGAACAATCGATTAG 57.121 34.615 10.97 8.06 0.00 1.73
2233 2263 1.176527 CGGAGGTCCAATGTTGCAAT 58.823 50.000 0.59 0.00 35.14 3.56
2294 2324 2.627699 ACCATGGACACCATTGTTGAAC 59.372 45.455 21.47 0.00 42.23 3.18
2309 2339 3.511146 AGGCAGTGAAATTGTAACCATGG 59.489 43.478 11.19 11.19 0.00 3.66
2314 2344 3.826466 GCAGAGGCAGTGAAATTGTAAC 58.174 45.455 0.00 0.00 40.72 2.50
2335 2365 3.678289 TCAGTGGACAATTCAGATGGTG 58.322 45.455 0.00 0.00 0.00 4.17
2336 2366 4.581309 ATCAGTGGACAATTCAGATGGT 57.419 40.909 0.00 0.00 0.00 3.55
2337 2367 6.996879 AGAATATCAGTGGACAATTCAGATGG 59.003 38.462 0.00 0.00 33.93 3.51
2339 2369 7.571919 ACAGAATATCAGTGGACAATTCAGAT 58.428 34.615 0.00 0.00 33.93 2.90
2340 2370 6.950842 ACAGAATATCAGTGGACAATTCAGA 58.049 36.000 0.00 0.00 33.93 3.27
2341 2371 7.440556 CCTACAGAATATCAGTGGACAATTCAG 59.559 40.741 0.00 0.00 33.93 3.02
2342 2372 7.092891 ACCTACAGAATATCAGTGGACAATTCA 60.093 37.037 0.00 0.00 33.93 2.57
2343 2373 7.275920 ACCTACAGAATATCAGTGGACAATTC 58.724 38.462 0.00 0.00 32.66 2.17
2344 2374 7.126421 AGACCTACAGAATATCAGTGGACAATT 59.874 37.037 0.00 0.00 0.00 2.32
2346 2376 5.958380 AGACCTACAGAATATCAGTGGACAA 59.042 40.000 0.00 0.00 0.00 3.18
2348 2378 5.594725 TCAGACCTACAGAATATCAGTGGAC 59.405 44.000 0.00 0.00 0.00 4.02
2533 2571 4.350346 TGTCGCAATTTCTGTTTTGACTG 58.650 39.130 0.00 0.00 0.00 3.51
2617 2655 1.270625 GCCGCCACACCAGCTATAATA 60.271 52.381 0.00 0.00 0.00 0.98
2708 2746 0.777446 TCCAAACTAGGCCTGCCTTT 59.223 50.000 17.99 6.92 45.70 3.11
2815 2853 1.409427 GATAGCCTTACTCCGTGCTGT 59.591 52.381 0.00 0.00 35.34 4.40
2869 2907 2.659610 GCGCACTCCACCTCTTCT 59.340 61.111 0.30 0.00 0.00 2.85
3041 3079 2.537560 GCCGCAGCGATGTAAGCAT 61.538 57.895 18.75 0.00 38.18 3.79
3100 3138 0.978146 GGAAGCACTCCCCTCTAGCA 60.978 60.000 0.00 0.00 38.44 3.49
3228 3266 9.694018 GGTATATTATACCTTTGGCAATGCCGC 62.694 44.444 20.39 0.00 41.99 6.53
3229 3267 6.404293 GGTATATTATACCTTTGGCAATGCCG 60.404 42.308 20.39 7.59 41.99 5.69
3299 3339 1.224965 CAACAAAAATGTTGGCCCCG 58.775 50.000 12.64 0.00 43.78 5.73
3326 3366 6.901887 CACGAAATGCAGCTTAAGTATTACTG 59.098 38.462 4.02 3.69 30.39 2.74
3342 3382 4.798387 AGTTTGTTCACTTTCACGAAATGC 59.202 37.500 0.00 0.00 0.00 3.56
3349 3389 8.110002 CAGCAATTTTAGTTTGTTCACTTTCAC 58.890 33.333 0.00 0.00 0.00 3.18
3369 3409 1.910671 ACATTGAAATGGCCCAGCAAT 59.089 42.857 0.00 2.14 40.70 3.56
3373 3441 7.872483 GGTTATATAAACATTGAAATGGCCCAG 59.128 37.037 5.61 0.00 40.70 4.45
3408 3476 3.437395 CAGTACGTGCAGAGAGTAGAACT 59.563 47.826 6.38 0.00 0.00 3.01
3417 3485 4.237724 TCAGAATTTCAGTACGTGCAGAG 58.762 43.478 6.38 0.00 0.00 3.35
3418 3486 4.251543 TCAGAATTTCAGTACGTGCAGA 57.748 40.909 6.38 0.00 0.00 4.26
3619 3687 2.358619 GCCAGGTAACCCATGGCA 59.641 61.111 15.27 0.00 46.20 4.92
3628 3696 2.362760 TACTCCGGCGCCAGGTAA 60.363 61.111 28.98 12.31 0.00 2.85
3688 3756 1.227615 GAACACGACCACCCCGAAA 60.228 57.895 0.00 0.00 0.00 3.46
3718 3786 2.665603 GAGACCGCCTTCTTGCCT 59.334 61.111 0.00 0.00 0.00 4.75
3733 3801 4.504916 CGGAGGAGGTGCTGCGAG 62.505 72.222 6.56 0.00 36.54 5.03
3935 4003 3.198068 CAACGATCACTCATTACTGGGG 58.802 50.000 0.00 0.00 0.00 4.96
3936 4004 2.609459 GCAACGATCACTCATTACTGGG 59.391 50.000 0.00 0.00 0.00 4.45
3960 4035 6.037830 AGCTAACAAGAAAGAAGTTAACGCAA 59.962 34.615 0.00 0.00 0.00 4.85
3964 4039 8.775527 AGCTTAGCTAACAAGAAAGAAGTTAAC 58.224 33.333 4.30 0.00 36.99 2.01
3980 4055 5.653769 AGAATGAAAATGGCAGCTTAGCTAA 59.346 36.000 6.35 5.94 36.40 3.09
4000 4075 2.092538 CCATGGAACTGGAGCTGAGAAT 60.093 50.000 5.56 0.00 38.69 2.40
4003 4078 0.907486 TCCATGGAACTGGAGCTGAG 59.093 55.000 13.46 0.00 40.43 3.35
4101 4176 8.942338 TGCAACCATTGATTAACTACTAGTAG 57.058 34.615 25.30 25.30 39.04 2.57
4107 4182 8.931385 AATTGATGCAACCATTGATTAACTAC 57.069 30.769 0.00 0.00 0.00 2.73
4183 4258 4.030913 AGAGGGGAAAAGATGACGATACA 58.969 43.478 0.00 0.00 0.00 2.29
4199 4274 4.383118 CCACACATTTACAGTAGAGAGGGG 60.383 50.000 0.00 0.00 0.00 4.79
4422 4506 4.479993 ATGGCACCGGAGCAGAGC 62.480 66.667 25.48 8.50 35.83 4.09
4439 4523 6.033341 GCAACAAAGATCAGTAACAACAACA 58.967 36.000 0.00 0.00 0.00 3.33
4440 4524 5.171337 CGCAACAAAGATCAGTAACAACAAC 59.829 40.000 0.00 0.00 0.00 3.32
4441 4525 5.163703 ACGCAACAAAGATCAGTAACAACAA 60.164 36.000 0.00 0.00 0.00 2.83
4518 4605 5.104360 TCCCAGAAGGAAATGTAGATGGAAG 60.104 44.000 0.00 0.00 43.78 3.46
4520 4607 4.370776 TCCCAGAAGGAAATGTAGATGGA 58.629 43.478 0.00 0.00 43.78 3.41
4521 4608 4.445448 CCTCCCAGAAGGAAATGTAGATGG 60.445 50.000 0.00 0.00 46.94 3.51
4522 4609 4.712476 CCTCCCAGAAGGAAATGTAGATG 58.288 47.826 0.00 0.00 46.94 2.90
4561 4648 2.228822 CTGAAGCCACGTTTTAATGCCT 59.771 45.455 0.00 0.00 0.00 4.75
4585 4672 3.577805 AGCAAAAGTAACAGGACCAGT 57.422 42.857 0.00 0.00 0.00 4.00
4614 4701 1.003580 TCTGCCAAAGCTTCTACCCTG 59.996 52.381 0.00 0.00 40.80 4.45
4615 4702 1.280421 CTCTGCCAAAGCTTCTACCCT 59.720 52.381 0.00 0.00 40.80 4.34
4616 4703 1.003696 ACTCTGCCAAAGCTTCTACCC 59.996 52.381 0.00 0.00 40.80 3.69
4617 4704 2.481289 ACTCTGCCAAAGCTTCTACC 57.519 50.000 0.00 0.00 40.80 3.18
4618 4705 3.195825 TCCTACTCTGCCAAAGCTTCTAC 59.804 47.826 0.00 0.00 40.80 2.59
4619 4706 3.441101 TCCTACTCTGCCAAAGCTTCTA 58.559 45.455 0.00 0.00 40.80 2.10
4620 4707 2.260822 TCCTACTCTGCCAAAGCTTCT 58.739 47.619 0.00 0.00 40.80 2.85
4712 4799 1.239347 GCCAAACCTGAGGTGTTCTC 58.761 55.000 4.15 0.00 42.74 2.87
4717 4804 3.763671 GGTGCCAAACCTGAGGTG 58.236 61.111 4.15 0.00 46.55 4.00
4746 4833 0.899720 TTACCTTGAGGCCTACACGG 59.100 55.000 19.51 19.51 39.32 4.94
4747 4834 2.167693 TGATTACCTTGAGGCCTACACG 59.832 50.000 4.42 3.36 39.32 4.49
4748 4835 3.451178 TCTGATTACCTTGAGGCCTACAC 59.549 47.826 4.42 0.00 39.32 2.90
4749 4836 3.451178 GTCTGATTACCTTGAGGCCTACA 59.549 47.826 4.42 2.40 39.32 2.74
4750 4837 3.181464 GGTCTGATTACCTTGAGGCCTAC 60.181 52.174 4.42 0.00 39.32 3.18
4751 4838 3.039011 GGTCTGATTACCTTGAGGCCTA 58.961 50.000 4.42 0.00 39.32 3.93
4752 4839 1.840635 GGTCTGATTACCTTGAGGCCT 59.159 52.381 3.86 3.86 39.32 5.19
4774 4861 6.072175 TCGTTTTTCTGGATATTTTCCCACAG 60.072 38.462 0.00 0.00 44.77 3.66
4775 4862 5.770663 TCGTTTTTCTGGATATTTTCCCACA 59.229 36.000 0.00 0.00 44.77 4.17
4776 4863 6.262193 TCGTTTTTCTGGATATTTTCCCAC 57.738 37.500 0.00 0.00 44.77 4.61
4788 4877 1.201921 CGAGCGGATTCGTTTTTCTGG 60.202 52.381 0.00 0.00 38.89 3.86
4789 4878 1.724623 TCGAGCGGATTCGTTTTTCTG 59.275 47.619 0.00 0.00 41.22 3.02
4790 4879 2.074547 TCGAGCGGATTCGTTTTTCT 57.925 45.000 0.00 0.00 41.22 2.52
4791 4880 2.157085 AGTTCGAGCGGATTCGTTTTTC 59.843 45.455 0.00 0.00 41.22 2.29
4792 4881 2.140717 AGTTCGAGCGGATTCGTTTTT 58.859 42.857 0.00 0.00 41.22 1.94
4793 4882 1.725164 GAGTTCGAGCGGATTCGTTTT 59.275 47.619 0.00 0.00 41.22 2.43
4794 4883 1.347320 GAGTTCGAGCGGATTCGTTT 58.653 50.000 0.00 0.00 41.22 3.60
4795 4884 0.458025 GGAGTTCGAGCGGATTCGTT 60.458 55.000 0.00 0.00 41.22 3.85
4796 4885 1.139095 GGAGTTCGAGCGGATTCGT 59.861 57.895 0.00 0.00 41.22 3.85
4797 4886 1.589196 GGGAGTTCGAGCGGATTCG 60.589 63.158 0.00 0.00 41.79 3.34
4798 4887 0.528684 CAGGGAGTTCGAGCGGATTC 60.529 60.000 0.00 0.00 0.00 2.52
4799 4888 1.517832 CAGGGAGTTCGAGCGGATT 59.482 57.895 0.00 0.00 0.00 3.01
4800 4889 2.427245 CCAGGGAGTTCGAGCGGAT 61.427 63.158 0.00 0.00 0.00 4.18
4801 4890 3.068691 CCAGGGAGTTCGAGCGGA 61.069 66.667 0.00 0.00 0.00 5.54
4802 4891 4.821589 GCCAGGGAGTTCGAGCGG 62.822 72.222 0.00 0.00 0.00 5.52
4803 4892 3.708220 GAGCCAGGGAGTTCGAGCG 62.708 68.421 0.00 0.00 0.00 5.03
4804 4893 2.185608 GAGCCAGGGAGTTCGAGC 59.814 66.667 0.00 0.00 0.00 5.03
4805 4894 1.671901 GAGGAGCCAGGGAGTTCGAG 61.672 65.000 0.00 0.00 0.00 4.04
4806 4895 1.682684 GAGGAGCCAGGGAGTTCGA 60.683 63.158 0.00 0.00 0.00 3.71
4807 4896 1.954362 CTGAGGAGCCAGGGAGTTCG 61.954 65.000 0.00 0.00 0.00 3.95
4808 4897 1.904032 CTGAGGAGCCAGGGAGTTC 59.096 63.158 0.00 0.00 0.00 3.01
4809 4898 2.297129 GCTGAGGAGCCAGGGAGTT 61.297 63.158 0.00 0.00 39.57 3.01
4810 4899 2.686835 GCTGAGGAGCCAGGGAGT 60.687 66.667 0.00 0.00 39.57 3.85
4811 4900 3.847602 CGCTGAGGAGCCAGGGAG 61.848 72.222 0.00 0.00 46.26 4.30
4813 4902 2.262774 AAATCGCTGAGGAGCCAGGG 62.263 60.000 0.00 0.00 42.91 4.45
4814 4903 1.094073 CAAATCGCTGAGGAGCCAGG 61.094 60.000 0.00 0.00 42.91 4.45
4815 4904 1.094073 CCAAATCGCTGAGGAGCCAG 61.094 60.000 0.00 0.00 42.91 4.85
4816 4905 1.078214 CCAAATCGCTGAGGAGCCA 60.078 57.895 0.00 0.00 42.91 4.75
4817 4906 1.821332 CCCAAATCGCTGAGGAGCC 60.821 63.158 0.00 0.00 42.91 4.70
4818 4907 2.476320 GCCCAAATCGCTGAGGAGC 61.476 63.158 0.00 0.00 42.37 4.70
4819 4908 1.821332 GGCCCAAATCGCTGAGGAG 60.821 63.158 0.00 0.00 0.00 3.69
4820 4909 2.257409 GAGGCCCAAATCGCTGAGGA 62.257 60.000 0.00 0.00 0.00 3.71
4821 4910 1.821332 GAGGCCCAAATCGCTGAGG 60.821 63.158 0.00 0.00 0.00 3.86
4822 4911 1.821332 GGAGGCCCAAATCGCTGAG 60.821 63.158 0.00 0.00 0.00 3.35
4823 4912 2.272146 GGAGGCCCAAATCGCTGA 59.728 61.111 0.00 0.00 0.00 4.26
4824 4913 2.117156 CAGGAGGCCCAAATCGCTG 61.117 63.158 0.00 0.00 33.88 5.18
4825 4914 2.273449 CAGGAGGCCCAAATCGCT 59.727 61.111 0.00 0.00 33.88 4.93
4826 4915 2.830370 CCAGGAGGCCCAAATCGC 60.830 66.667 0.00 0.00 33.88 4.58
4836 4925 3.917760 GATCGGACGGCCAGGAGG 61.918 72.222 8.76 0.00 38.23 4.30
4837 4926 4.271816 CGATCGGACGGCCAGGAG 62.272 72.222 8.76 0.00 0.00 3.69
4850 4939 1.212616 CTCCATCAAGCGAACCGATC 58.787 55.000 0.00 0.00 0.00 3.69
4851 4940 0.537188 ACTCCATCAAGCGAACCGAT 59.463 50.000 0.00 0.00 0.00 4.18
4852 4941 0.320374 AACTCCATCAAGCGAACCGA 59.680 50.000 0.00 0.00 0.00 4.69
4853 4942 0.721718 GAACTCCATCAAGCGAACCG 59.278 55.000 0.00 0.00 0.00 4.44
4854 4943 1.087501 GGAACTCCATCAAGCGAACC 58.912 55.000 0.00 0.00 35.64 3.62
4855 4944 0.721718 CGGAACTCCATCAAGCGAAC 59.278 55.000 0.00 0.00 35.14 3.95
4856 4945 0.391130 CCGGAACTCCATCAAGCGAA 60.391 55.000 0.00 0.00 35.14 4.70
4857 4946 1.218047 CCGGAACTCCATCAAGCGA 59.782 57.895 0.00 0.00 35.14 4.93
4858 4947 2.464459 GCCGGAACTCCATCAAGCG 61.464 63.158 5.05 0.00 35.14 4.68
4859 4948 2.115291 GGCCGGAACTCCATCAAGC 61.115 63.158 5.05 0.00 35.14 4.01
4860 4949 1.815421 CGGCCGGAACTCCATCAAG 60.815 63.158 20.10 0.00 35.14 3.02
4861 4950 2.267642 CGGCCGGAACTCCATCAA 59.732 61.111 20.10 0.00 35.14 2.57
4862 4951 3.000819 ACGGCCGGAACTCCATCA 61.001 61.111 31.76 0.00 35.14 3.07
4863 4952 2.202892 GACGGCCGGAACTCCATC 60.203 66.667 31.76 11.54 35.14 3.51
4864 4953 4.143333 CGACGGCCGGAACTCCAT 62.143 66.667 31.76 4.91 35.14 3.41
4889 4978 4.933064 GACGAGATCTGCCGGCGG 62.933 72.222 30.18 30.18 0.00 6.13
4890 4979 4.933064 GGACGAGATCTGCCGGCG 62.933 72.222 23.90 16.91 33.98 6.46
4891 4980 4.933064 CGGACGAGATCTGCCGGC 62.933 72.222 22.73 22.73 40.08 6.13
4894 4983 2.024871 CGACGGACGAGATCTGCC 59.975 66.667 0.00 0.00 45.77 4.85
4895 4984 1.787057 ATCCGACGGACGAGATCTGC 61.787 60.000 21.02 0.00 45.77 4.26
4896 4985 0.236187 GATCCGACGGACGAGATCTG 59.764 60.000 21.02 0.00 45.77 2.90
4897 4986 1.222766 CGATCCGACGGACGAGATCT 61.223 60.000 21.02 0.03 45.77 2.75
4898 4987 1.204563 CGATCCGACGGACGAGATC 59.795 63.158 21.02 11.60 45.77 2.75
4899 4988 0.812811 TTCGATCCGACGGACGAGAT 60.813 55.000 27.75 12.75 45.77 2.75
4900 4989 0.812811 ATTCGATCCGACGGACGAGA 60.813 55.000 27.75 20.90 45.77 4.04
4901 4990 0.384477 GATTCGATCCGACGGACGAG 60.384 60.000 27.75 19.41 45.77 4.18
4902 4991 1.645455 GATTCGATCCGACGGACGA 59.355 57.895 26.61 26.61 45.77 4.20
4903 4992 1.370172 GGATTCGATCCGACGGACG 60.370 63.158 21.02 22.86 40.13 4.79
4904 4993 4.630097 GGATTCGATCCGACGGAC 57.370 61.111 21.02 12.25 40.13 4.79
4912 5001 1.152008 AGGGGAGGGGGATTCGATC 60.152 63.158 0.00 0.00 0.00 3.69
4913 5002 1.462238 CAGGGGAGGGGGATTCGAT 60.462 63.158 0.00 0.00 0.00 3.59
4914 5003 1.596006 TACAGGGGAGGGGGATTCGA 61.596 60.000 0.00 0.00 0.00 3.71
4915 5004 1.074775 TACAGGGGAGGGGGATTCG 60.075 63.158 0.00 0.00 0.00 3.34
4916 5005 1.419720 GCTACAGGGGAGGGGGATTC 61.420 65.000 0.00 0.00 0.00 2.52
4917 5006 1.386057 GCTACAGGGGAGGGGGATT 60.386 63.158 0.00 0.00 0.00 3.01
4918 5007 1.990370 ATGCTACAGGGGAGGGGGAT 61.990 60.000 0.00 0.00 0.00 3.85
4919 5008 2.657352 ATGCTACAGGGGAGGGGGA 61.657 63.158 0.00 0.00 0.00 4.81
4920 5009 2.039405 ATGCTACAGGGGAGGGGG 60.039 66.667 0.00 0.00 0.00 5.40
4921 5010 2.455565 CCATGCTACAGGGGAGGGG 61.456 68.421 0.00 0.00 30.99 4.79
4922 5011 1.281925 AACCATGCTACAGGGGAGGG 61.282 60.000 3.08 0.00 39.88 4.30
4923 5012 0.107017 CAACCATGCTACAGGGGAGG 60.107 60.000 3.08 0.00 39.88 4.30
4924 5013 0.911769 TCAACCATGCTACAGGGGAG 59.088 55.000 3.08 0.00 39.88 4.30
4925 5014 3.096852 TCAACCATGCTACAGGGGA 57.903 52.632 3.08 0.00 39.88 4.81


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.