Multiple sequence alignment - TraesCS7A01G314800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G314800 chr7A 100.000 2637 0 0 1 2637 448485209 448487845 0.000000e+00 4870.0
1 TraesCS7A01G314800 chr7A 87.374 594 74 1 2045 2637 666429451 666430044 0.000000e+00 680.0
2 TraesCS7A01G314800 chr7B 91.153 1266 64 22 563 1812 394946677 394947910 0.000000e+00 1674.0
3 TraesCS7A01G314800 chr7B 97.046 237 6 1 299 534 394946444 394946680 5.290000e-107 398.0
4 TraesCS7A01G314800 chr7B 81.911 293 29 15 1 288 394945585 394945858 2.640000e-55 226.0
5 TraesCS7A01G314800 chr7B 94.175 103 6 0 186 288 394941538 394941640 9.770000e-35 158.0
6 TraesCS7A01G314800 chr7B 96.591 88 3 0 299 386 394942226 394942313 2.120000e-31 147.0
7 TraesCS7A01G314800 chr6D 91.878 591 47 1 2048 2637 414118469 414117879 0.000000e+00 824.0
8 TraesCS7A01G314800 chr6D 87.817 591 71 1 2048 2637 471321081 471320491 0.000000e+00 691.0
9 TraesCS7A01G314800 chr6D 91.176 136 10 2 1918 2052 414118964 414119098 1.610000e-42 183.0
10 TraesCS7A01G314800 chr7D 90.485 557 24 12 691 1242 395220510 395221042 0.000000e+00 708.0
11 TraesCS7A01G314800 chr7D 86.234 632 26 20 1 587 395192496 395193111 1.720000e-176 628.0
12 TraesCS7A01G314800 chr7D 93.103 406 21 3 286 688 395325280 395325681 2.920000e-164 588.0
13 TraesCS7A01G314800 chr7D 88.338 343 23 8 691 1022 395325963 395326299 1.900000e-106 396.0
14 TraesCS7A01G314800 chr7D 93.050 259 16 2 1270 1528 395222866 395223122 6.890000e-101 377.0
15 TraesCS7A01G314800 chr7D 90.083 121 7 2 576 696 395220315 395220430 4.550000e-33 152.0
16 TraesCS7A01G314800 chr7D 94.048 84 5 0 1524 1607 395270259 395270342 7.660000e-26 128.0
17 TraesCS7A01G314800 chr7D 93.590 78 5 0 1 78 395321661 395321738 1.660000e-22 117.0
18 TraesCS7A01G314800 chr7D 94.828 58 3 0 142 199 395322077 395322134 1.010000e-14 91.6
19 TraesCS7A01G314800 chr7D 100.000 33 0 0 1886 1918 395327396 395327428 7.880000e-06 62.1
20 TraesCS7A01G314800 chr5B 87.817 591 71 1 2048 2637 493603525 493602935 0.000000e+00 691.0
21 TraesCS7A01G314800 chr5B 87.710 594 72 1 2045 2637 531694105 531694698 0.000000e+00 691.0
22 TraesCS7A01G314800 chr2B 87.710 594 72 1 2045 2637 196016328 196016921 0.000000e+00 691.0
23 TraesCS7A01G314800 chr2B 87.817 591 71 1 2048 2637 539531689 539531099 0.000000e+00 691.0
24 TraesCS7A01G314800 chr1A 87.648 591 72 1 2048 2637 61254605 61254015 0.000000e+00 686.0
25 TraesCS7A01G314800 chr1A 93.382 136 8 1 1918 2052 541465524 541465659 1.600000e-47 200.0
26 TraesCS7A01G314800 chr5A 87.479 591 73 1 2048 2637 494400011 494399421 0.000000e+00 680.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G314800 chr7A 448485209 448487845 2636 False 4870.000000 4870 100.0000 1 2637 1 chr7A.!!$F1 2636
1 TraesCS7A01G314800 chr7A 666429451 666430044 593 False 680.000000 680 87.3740 2045 2637 1 chr7A.!!$F2 592
2 TraesCS7A01G314800 chr7B 394941538 394947910 6372 False 520.600000 1674 92.1752 1 1812 5 chr7B.!!$F1 1811
3 TraesCS7A01G314800 chr6D 414117879 414118469 590 True 824.000000 824 91.8780 2048 2637 1 chr6D.!!$R1 589
4 TraesCS7A01G314800 chr6D 471320491 471321081 590 True 691.000000 691 87.8170 2048 2637 1 chr6D.!!$R2 589
5 TraesCS7A01G314800 chr7D 395192496 395193111 615 False 628.000000 628 86.2340 1 587 1 chr7D.!!$F1 586
6 TraesCS7A01G314800 chr7D 395220315 395223122 2807 False 412.333333 708 91.2060 576 1528 3 chr7D.!!$F3 952
7 TraesCS7A01G314800 chr7D 395321661 395327428 5767 False 250.940000 588 93.9718 1 1918 5 chr7D.!!$F4 1917
8 TraesCS7A01G314800 chr5B 493602935 493603525 590 True 691.000000 691 87.8170 2048 2637 1 chr5B.!!$R1 589
9 TraesCS7A01G314800 chr5B 531694105 531694698 593 False 691.000000 691 87.7100 2045 2637 1 chr5B.!!$F1 592
10 TraesCS7A01G314800 chr2B 196016328 196016921 593 False 691.000000 691 87.7100 2045 2637 1 chr2B.!!$F1 592
11 TraesCS7A01G314800 chr2B 539531099 539531689 590 True 691.000000 691 87.8170 2048 2637 1 chr2B.!!$R1 589
12 TraesCS7A01G314800 chr1A 61254015 61254605 590 True 686.000000 686 87.6480 2048 2637 1 chr1A.!!$R1 589
13 TraesCS7A01G314800 chr5A 494399421 494400011 590 True 680.000000 680 87.4790 2048 2637 1 chr5A.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
73 4125 0.759959 TGGTTGTTGGCTCTACGGAA 59.24 50.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 12830 0.037326 TCTTGTCCAGCGCGATCTTT 60.037 50.0 12.1 0.0 0.0 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 4125 0.759959 TGGTTGTTGGCTCTACGGAA 59.240 50.000 0.00 0.00 0.00 4.30
80 4132 4.250464 TGTTGGCTCTACGGAATTTGTAG 58.750 43.478 10.86 10.86 40.51 2.74
82 4134 2.500098 TGGCTCTACGGAATTTGTAGCT 59.500 45.455 11.84 0.00 39.30 3.32
103 4165 4.536765 CTCCCCTATTTAGGCATGTTTGT 58.463 43.478 0.00 0.00 42.26 2.83
106 4168 3.701040 CCCTATTTAGGCATGTTTGTGCT 59.299 43.478 0.00 0.00 44.45 4.40
282 4881 5.321516 GTGCAAGCGGTTATAGTTTAACAG 58.678 41.667 0.00 3.18 0.00 3.16
348 8335 5.597813 ATCAATGAAGCCGATCGATTAAC 57.402 39.130 18.66 4.61 0.00 2.01
539 8527 5.948992 TCGACATTCGACAGAGATGATAT 57.051 39.130 1.16 0.00 44.82 1.63
540 8528 5.693814 TCGACATTCGACAGAGATGATATG 58.306 41.667 1.16 0.00 44.82 1.78
541 8529 5.239525 TCGACATTCGACAGAGATGATATGT 59.760 40.000 1.16 0.00 44.82 2.29
542 8530 6.426937 TCGACATTCGACAGAGATGATATGTA 59.573 38.462 1.16 0.00 44.82 2.29
543 8531 6.740453 CGACATTCGACAGAGATGATATGTAG 59.260 42.308 1.16 0.00 43.74 2.74
544 8532 7.360438 CGACATTCGACAGAGATGATATGTAGA 60.360 40.741 1.16 0.00 43.74 2.59
545 8533 8.347004 ACATTCGACAGAGATGATATGTAGAT 57.653 34.615 1.16 0.00 35.17 1.98
546 8534 9.454859 ACATTCGACAGAGATGATATGTAGATA 57.545 33.333 1.16 0.00 35.17 1.98
554 8542 9.519191 CAGAGATGATATGTAGATATAGAGGGG 57.481 40.741 0.00 0.00 0.00 4.79
555 8543 8.677871 AGAGATGATATGTAGATATAGAGGGGG 58.322 40.741 0.00 0.00 0.00 5.40
556 8544 8.370028 AGATGATATGTAGATATAGAGGGGGT 57.630 38.462 0.00 0.00 0.00 4.95
557 8545 8.231007 AGATGATATGTAGATATAGAGGGGGTG 58.769 40.741 0.00 0.00 0.00 4.61
558 8546 6.136857 TGATATGTAGATATAGAGGGGGTGC 58.863 44.000 0.00 0.00 0.00 5.01
559 8547 3.915346 TGTAGATATAGAGGGGGTGCA 57.085 47.619 0.00 0.00 0.00 4.57
560 8548 4.419984 TGTAGATATAGAGGGGGTGCAT 57.580 45.455 0.00 0.00 0.00 3.96
561 8549 4.353777 TGTAGATATAGAGGGGGTGCATC 58.646 47.826 0.00 0.00 0.00 3.91
614 8642 3.093278 CGGCAAGCATCGTCTTCC 58.907 61.111 0.00 0.00 0.00 3.46
625 8653 2.011122 TCGTCTTCCTTCCAGGAACT 57.989 50.000 0.00 0.00 46.88 3.01
702 9009 7.382488 TCATCGTTCTTATATAGCTTCTGCAAC 59.618 37.037 0.00 0.00 42.74 4.17
760 9073 0.809636 CGGCATGCGTGGTGAGAATA 60.810 55.000 12.44 0.00 0.00 1.75
781 9096 4.926140 ATGAGATGCGTCTGAATCACTA 57.074 40.909 14.59 0.00 33.97 2.74
782 9097 4.033990 TGAGATGCGTCTGAATCACTAC 57.966 45.455 14.59 0.00 33.97 2.73
783 9098 3.696548 TGAGATGCGTCTGAATCACTACT 59.303 43.478 14.59 0.00 33.97 2.57
784 9099 4.881850 TGAGATGCGTCTGAATCACTACTA 59.118 41.667 14.59 0.00 33.97 1.82
866 9181 7.364200 CCAAAGTAACTAATCTCGATCGATCT 58.636 38.462 19.78 8.53 0.00 2.75
882 9197 3.118992 TCGATCTATCTGCAGTGCACTTT 60.119 43.478 18.94 4.29 33.79 2.66
945 9263 7.445402 GTGTGTATTTATACCATGCCTCATCTT 59.555 37.037 0.00 0.00 32.33 2.40
952 9270 1.404391 CCATGCCTCATCTTGCTTCAC 59.596 52.381 0.00 0.00 0.00 3.18
1022 9354 1.352622 TTTCCTCCTGCTGGTGGTGT 61.353 55.000 24.81 0.00 44.94 4.16
1023 9355 1.352622 TTCCTCCTGCTGGTGGTGTT 61.353 55.000 24.81 0.00 44.94 3.32
1024 9356 1.601759 CCTCCTGCTGGTGGTGTTG 60.602 63.158 19.61 0.00 40.99 3.33
1025 9357 1.601759 CTCCTGCTGGTGGTGTTGG 60.602 63.158 9.73 0.00 34.23 3.77
1026 9358 2.195683 CCTGCTGGTGGTGTTGGT 59.804 61.111 0.51 0.00 0.00 3.67
1027 9359 2.195567 CCTGCTGGTGGTGTTGGTG 61.196 63.158 0.51 0.00 0.00 4.17
1028 9360 2.832661 TGCTGGTGGTGTTGGTGC 60.833 61.111 0.00 0.00 0.00 5.01
1029 9361 2.519302 GCTGGTGGTGTTGGTGCT 60.519 61.111 0.00 0.00 0.00 4.40
1030 9362 2.848858 GCTGGTGGTGTTGGTGCTG 61.849 63.158 0.00 0.00 0.00 4.41
1031 9363 2.123939 TGGTGGTGTTGGTGCTGG 60.124 61.111 0.00 0.00 0.00 4.85
1032 9364 2.194597 GGTGGTGTTGGTGCTGGA 59.805 61.111 0.00 0.00 0.00 3.86
1033 9365 1.898574 GGTGGTGTTGGTGCTGGAG 60.899 63.158 0.00 0.00 0.00 3.86
1179 10355 2.665777 CCTGACGCAGGTACGAATG 58.334 57.895 15.27 0.00 45.82 2.67
1267 12239 0.821517 CTGGCTGGTCCGTGTATGTA 59.178 55.000 0.00 0.00 37.80 2.29
1277 12249 6.536447 TGGTCCGTGTATGTATAGACTGATA 58.464 40.000 0.00 0.00 0.00 2.15
1291 12263 2.027751 GATACCGCGCTGAGGTCC 59.972 66.667 8.84 0.00 42.81 4.46
1349 12321 4.821589 GCTTCGAGGGGCTGGTCG 62.822 72.222 0.00 0.00 37.54 4.79
1609 12581 2.661866 GTGCTGCTCGTTGTCGGT 60.662 61.111 0.00 0.00 37.69 4.69
1638 12610 2.125753 CCTCTGCGGAGTGTGAGC 60.126 66.667 21.06 0.00 37.86 4.26
1671 12643 3.187414 GCTGCTGCGTGCTCTCTC 61.187 66.667 0.00 0.00 43.37 3.20
1672 12644 2.572812 CTGCTGCGTGCTCTCTCT 59.427 61.111 0.00 0.00 43.37 3.10
1696 12668 1.303074 TGCACCTCTCGGTAGTCGT 60.303 57.895 0.00 0.00 43.24 4.34
1699 12671 1.202121 GCACCTCTCGGTAGTCGTTAC 60.202 57.143 0.00 0.00 43.24 2.50
1732 12710 0.035152 TGCATGCATCCTCTTCGGTT 60.035 50.000 18.46 0.00 0.00 4.44
1736 12714 1.266178 TGCATCCTCTTCGGTTCTCA 58.734 50.000 0.00 0.00 0.00 3.27
1740 12718 4.081142 TGCATCCTCTTCGGTTCTCAATAA 60.081 41.667 0.00 0.00 0.00 1.40
1744 12722 3.532542 CTCTTCGGTTCTCAATAACCCC 58.467 50.000 0.00 0.00 45.18 4.95
1745 12723 2.907696 TCTTCGGTTCTCAATAACCCCA 59.092 45.455 0.00 0.00 45.18 4.96
1752 12730 2.193127 TCTCAATAACCCCATCGTGGT 58.807 47.619 3.82 0.00 35.17 4.16
1758 12736 6.660800 TCAATAACCCCATCGTGGTTTAATA 58.339 36.000 0.00 0.00 43.52 0.98
1759 12737 7.117397 TCAATAACCCCATCGTGGTTTAATAA 58.883 34.615 0.00 0.00 43.52 1.40
1760 12738 7.780745 TCAATAACCCCATCGTGGTTTAATAAT 59.219 33.333 0.00 0.00 43.52 1.28
1761 12739 9.069082 CAATAACCCCATCGTGGTTTAATAATA 57.931 33.333 0.00 0.00 43.52 0.98
1791 12769 5.412594 ACAATAATTAGTGTGCTGTCAGTGG 59.587 40.000 17.16 0.00 32.76 4.00
1794 12775 0.679505 TAGTGTGCTGTCAGTGGACC 59.320 55.000 0.93 0.00 43.65 4.46
1797 12778 1.302033 GTGCTGTCAGTGGACCCAG 60.302 63.158 0.93 0.00 43.65 4.45
1799 12780 2.047844 CTGTCAGTGGACCCAGCG 60.048 66.667 0.00 0.00 43.65 5.18
1808 12789 1.687123 GTGGACCCAGCGTATCTGTAT 59.313 52.381 0.00 0.00 41.25 2.29
1812 12793 3.057456 GGACCCAGCGTATCTGTATGTAG 60.057 52.174 0.00 0.00 41.25 2.74
1813 12794 3.563223 ACCCAGCGTATCTGTATGTAGT 58.437 45.455 0.00 0.00 41.25 2.73
1814 12795 3.958798 ACCCAGCGTATCTGTATGTAGTT 59.041 43.478 0.00 0.00 41.25 2.24
1815 12796 5.135383 ACCCAGCGTATCTGTATGTAGTTA 58.865 41.667 0.00 0.00 41.25 2.24
1816 12797 5.595542 ACCCAGCGTATCTGTATGTAGTTAA 59.404 40.000 0.00 0.00 41.25 2.01
1817 12798 6.150318 CCCAGCGTATCTGTATGTAGTTAAG 58.850 44.000 0.00 0.00 41.25 1.85
1818 12799 6.016527 CCCAGCGTATCTGTATGTAGTTAAGA 60.017 42.308 0.00 0.00 41.25 2.10
1819 12800 7.309255 CCCAGCGTATCTGTATGTAGTTAAGAT 60.309 40.741 0.00 0.00 41.25 2.40
1820 12801 7.751348 CCAGCGTATCTGTATGTAGTTAAGATC 59.249 40.741 0.00 0.00 41.25 2.75
1821 12802 7.478978 CAGCGTATCTGTATGTAGTTAAGATCG 59.521 40.741 0.00 0.00 38.02 3.69
1822 12803 6.248839 GCGTATCTGTATGTAGTTAAGATCGC 59.751 42.308 0.00 0.00 37.08 4.58
1823 12804 6.462010 CGTATCTGTATGTAGTTAAGATCGCG 59.538 42.308 0.00 0.00 0.00 5.87
1824 12805 4.534168 TCTGTATGTAGTTAAGATCGCGC 58.466 43.478 0.00 0.00 0.00 6.86
1825 12806 4.275196 TCTGTATGTAGTTAAGATCGCGCT 59.725 41.667 5.56 0.00 0.00 5.92
1826 12807 4.287720 TGTATGTAGTTAAGATCGCGCTG 58.712 43.478 5.56 0.00 0.00 5.18
1827 12808 2.203800 TGTAGTTAAGATCGCGCTGG 57.796 50.000 5.56 0.00 0.00 4.85
1828 12809 1.746787 TGTAGTTAAGATCGCGCTGGA 59.253 47.619 5.56 0.00 0.00 3.86
1829 12810 2.117910 GTAGTTAAGATCGCGCTGGAC 58.882 52.381 5.56 0.00 0.00 4.02
1830 12811 0.530744 AGTTAAGATCGCGCTGGACA 59.469 50.000 5.56 0.00 0.00 4.02
1831 12812 1.067142 AGTTAAGATCGCGCTGGACAA 60.067 47.619 5.56 0.00 0.00 3.18
1832 12813 1.933853 GTTAAGATCGCGCTGGACAAT 59.066 47.619 5.56 0.00 0.00 2.71
1833 12814 2.309528 TAAGATCGCGCTGGACAATT 57.690 45.000 5.56 0.00 0.00 2.32
1834 12815 1.009829 AAGATCGCGCTGGACAATTC 58.990 50.000 5.56 0.00 0.00 2.17
1835 12816 0.811616 AGATCGCGCTGGACAATTCC 60.812 55.000 5.56 0.00 43.19 3.01
1836 12817 1.776034 GATCGCGCTGGACAATTCCC 61.776 60.000 5.56 0.00 42.01 3.97
1837 12818 2.257409 ATCGCGCTGGACAATTCCCT 62.257 55.000 5.56 0.00 42.01 4.20
1838 12819 2.464459 CGCGCTGGACAATTCCCTC 61.464 63.158 5.56 0.00 42.01 4.30
1839 12820 1.377202 GCGCTGGACAATTCCCTCA 60.377 57.895 0.00 0.00 42.01 3.86
1840 12821 0.960364 GCGCTGGACAATTCCCTCAA 60.960 55.000 0.00 0.00 42.01 3.02
1841 12822 1.533625 CGCTGGACAATTCCCTCAAA 58.466 50.000 0.00 0.00 42.01 2.69
1842 12823 1.885887 CGCTGGACAATTCCCTCAAAA 59.114 47.619 0.00 0.00 42.01 2.44
1843 12824 2.295909 CGCTGGACAATTCCCTCAAAAA 59.704 45.455 0.00 0.00 42.01 1.94
1865 12846 2.927004 AAAAAGATCGCGCTGGACA 58.073 47.368 5.56 0.00 0.00 4.02
1866 12847 1.234821 AAAAAGATCGCGCTGGACAA 58.765 45.000 5.56 0.00 0.00 3.18
1867 12848 0.798776 AAAAGATCGCGCTGGACAAG 59.201 50.000 5.56 0.00 0.00 3.16
1868 12849 0.037326 AAAGATCGCGCTGGACAAGA 60.037 50.000 5.56 0.00 0.00 3.02
1869 12850 0.176680 AAGATCGCGCTGGACAAGAT 59.823 50.000 5.56 0.00 0.00 2.40
1870 12851 0.529337 AGATCGCGCTGGACAAGATG 60.529 55.000 5.56 0.00 0.00 2.90
1871 12852 0.807667 GATCGCGCTGGACAAGATGT 60.808 55.000 5.56 0.00 0.00 3.06
1872 12853 1.086067 ATCGCGCTGGACAAGATGTG 61.086 55.000 5.56 0.00 0.00 3.21
1873 12854 2.743752 CGCGCTGGACAAGATGTGG 61.744 63.158 5.56 0.00 0.00 4.17
1874 12855 1.375908 GCGCTGGACAAGATGTGGA 60.376 57.895 0.00 0.00 0.00 4.02
1875 12856 1.364626 GCGCTGGACAAGATGTGGAG 61.365 60.000 0.00 0.00 0.00 3.86
1876 12857 0.247460 CGCTGGACAAGATGTGGAGA 59.753 55.000 0.00 0.00 0.00 3.71
1877 12858 1.134580 CGCTGGACAAGATGTGGAGAT 60.135 52.381 0.00 0.00 0.00 2.75
1878 12859 2.679059 CGCTGGACAAGATGTGGAGATT 60.679 50.000 0.00 0.00 0.00 2.40
1879 12860 3.430790 CGCTGGACAAGATGTGGAGATTA 60.431 47.826 0.00 0.00 0.00 1.75
1880 12861 4.517285 GCTGGACAAGATGTGGAGATTAA 58.483 43.478 0.00 0.00 0.00 1.40
1881 12862 4.333926 GCTGGACAAGATGTGGAGATTAAC 59.666 45.833 0.00 0.00 0.00 2.01
1882 12863 5.738909 CTGGACAAGATGTGGAGATTAACT 58.261 41.667 0.00 0.00 0.00 2.24
1883 12864 5.491070 TGGACAAGATGTGGAGATTAACTG 58.509 41.667 0.00 0.00 0.00 3.16
1884 12865 5.013079 TGGACAAGATGTGGAGATTAACTGT 59.987 40.000 0.00 0.00 0.00 3.55
1918 12899 6.822170 TGCGTTGTTATATATGGTGGTTGTTA 59.178 34.615 0.00 0.00 0.00 2.41
1919 12900 7.011576 TGCGTTGTTATATATGGTGGTTGTTAG 59.988 37.037 0.00 0.00 0.00 2.34
1920 12901 7.225145 GCGTTGTTATATATGGTGGTTGTTAGA 59.775 37.037 0.00 0.00 0.00 2.10
1921 12902 9.100554 CGTTGTTATATATGGTGGTTGTTAGAA 57.899 33.333 0.00 0.00 0.00 2.10
1924 12905 9.062524 TGTTATATATGGTGGTTGTTAGAATGC 57.937 33.333 0.00 0.00 0.00 3.56
1925 12906 8.512138 GTTATATATGGTGGTTGTTAGAATGCC 58.488 37.037 0.00 0.00 0.00 4.40
1926 12907 1.917872 TGGTGGTTGTTAGAATGCCC 58.082 50.000 0.00 0.00 0.00 5.36
1927 12908 0.808755 GGTGGTTGTTAGAATGCCCG 59.191 55.000 0.00 0.00 0.00 6.13
1928 12909 0.808755 GTGGTTGTTAGAATGCCCGG 59.191 55.000 0.00 0.00 0.00 5.73
1929 12910 0.963355 TGGTTGTTAGAATGCCCGGC 60.963 55.000 1.04 1.04 0.00 6.13
1930 12911 1.427819 GTTGTTAGAATGCCCGGCG 59.572 57.895 4.58 0.00 0.00 6.46
1931 12912 1.747367 TTGTTAGAATGCCCGGCGG 60.747 57.895 21.46 21.46 0.00 6.13
1941 12922 3.536917 CCCGGCGGCACTATGAGA 61.537 66.667 23.20 0.00 0.00 3.27
1942 12923 2.028190 CCGGCGGCACTATGAGAG 59.972 66.667 15.42 0.00 0.00 3.20
1943 12924 2.028190 CGGCGGCACTATGAGAGG 59.972 66.667 10.53 0.00 0.00 3.69
1944 12925 2.280457 GGCGGCACTATGAGAGGC 60.280 66.667 3.07 0.00 0.00 4.70
1945 12926 2.501128 GCGGCACTATGAGAGGCA 59.499 61.111 0.00 0.00 31.12 4.75
1946 12927 1.070445 GCGGCACTATGAGAGGCAT 59.930 57.895 0.00 0.00 41.08 4.40
1947 12928 1.226686 GCGGCACTATGAGAGGCATG 61.227 60.000 0.00 0.00 37.87 4.06
1948 12929 0.390492 CGGCACTATGAGAGGCATGA 59.610 55.000 0.00 0.00 37.87 3.07
1949 12930 1.001746 CGGCACTATGAGAGGCATGAT 59.998 52.381 0.00 0.00 37.87 2.45
1950 12931 2.232208 CGGCACTATGAGAGGCATGATA 59.768 50.000 0.00 0.00 37.87 2.15
1951 12932 3.675502 CGGCACTATGAGAGGCATGATAG 60.676 52.174 0.00 0.00 37.87 2.08
1952 12933 3.513119 GGCACTATGAGAGGCATGATAGA 59.487 47.826 0.00 0.00 37.87 1.98
1953 12934 4.381825 GGCACTATGAGAGGCATGATAGAG 60.382 50.000 0.00 0.00 37.87 2.43
1954 12935 4.462132 GCACTATGAGAGGCATGATAGAGA 59.538 45.833 0.00 0.00 37.87 3.10
1955 12936 5.047448 GCACTATGAGAGGCATGATAGAGAA 60.047 44.000 0.00 0.00 37.87 2.87
1956 12937 6.623486 CACTATGAGAGGCATGATAGAGAAG 58.377 44.000 0.00 0.00 37.87 2.85
1957 12938 6.433716 CACTATGAGAGGCATGATAGAGAAGA 59.566 42.308 0.00 0.00 37.87 2.87
1958 12939 5.726980 ATGAGAGGCATGATAGAGAAGAC 57.273 43.478 0.00 0.00 35.42 3.01
1959 12940 3.894427 TGAGAGGCATGATAGAGAAGACC 59.106 47.826 0.00 0.00 0.00 3.85
1960 12941 2.890311 AGAGGCATGATAGAGAAGACCG 59.110 50.000 0.00 0.00 0.00 4.79
1961 12942 2.625790 GAGGCATGATAGAGAAGACCGT 59.374 50.000 0.00 0.00 0.00 4.83
1962 12943 3.034635 AGGCATGATAGAGAAGACCGTT 58.965 45.455 0.00 0.00 0.00 4.44
1963 12944 3.452627 AGGCATGATAGAGAAGACCGTTT 59.547 43.478 0.00 0.00 0.00 3.60
1964 12945 3.557595 GGCATGATAGAGAAGACCGTTTG 59.442 47.826 0.00 0.00 0.00 2.93
1965 12946 4.433615 GCATGATAGAGAAGACCGTTTGA 58.566 43.478 0.00 0.00 0.00 2.69
1966 12947 4.505922 GCATGATAGAGAAGACCGTTTGAG 59.494 45.833 0.00 0.00 0.00 3.02
1967 12948 5.679894 GCATGATAGAGAAGACCGTTTGAGA 60.680 44.000 0.00 0.00 0.00 3.27
1968 12949 5.568685 TGATAGAGAAGACCGTTTGAGAG 57.431 43.478 0.00 0.00 0.00 3.20
1969 12950 4.399618 TGATAGAGAAGACCGTTTGAGAGG 59.600 45.833 0.00 0.00 0.00 3.69
1970 12951 2.877866 AGAGAAGACCGTTTGAGAGGA 58.122 47.619 0.00 0.00 0.00 3.71
1971 12952 2.823154 AGAGAAGACCGTTTGAGAGGAG 59.177 50.000 0.00 0.00 0.00 3.69
1972 12953 2.820787 GAGAAGACCGTTTGAGAGGAGA 59.179 50.000 0.00 0.00 0.00 3.71
1973 12954 3.436243 AGAAGACCGTTTGAGAGGAGAT 58.564 45.455 0.00 0.00 0.00 2.75
1974 12955 3.194542 AGAAGACCGTTTGAGAGGAGATG 59.805 47.826 0.00 0.00 0.00 2.90
1975 12956 2.808919 AGACCGTTTGAGAGGAGATGA 58.191 47.619 0.00 0.00 0.00 2.92
1976 12957 2.494073 AGACCGTTTGAGAGGAGATGAC 59.506 50.000 0.00 0.00 0.00 3.06
1977 12958 1.550976 ACCGTTTGAGAGGAGATGACC 59.449 52.381 0.00 0.00 0.00 4.02
1978 12959 1.469940 CCGTTTGAGAGGAGATGACCG 60.470 57.143 0.00 0.00 34.73 4.79
1979 12960 1.472878 CGTTTGAGAGGAGATGACCGA 59.527 52.381 0.00 0.00 34.73 4.69
1980 12961 2.732597 CGTTTGAGAGGAGATGACCGAC 60.733 54.545 0.00 0.00 34.73 4.79
1981 12962 2.494073 GTTTGAGAGGAGATGACCGACT 59.506 50.000 0.00 0.00 34.73 4.18
1982 12963 2.516227 TGAGAGGAGATGACCGACTT 57.484 50.000 0.00 0.00 34.73 3.01
1983 12964 2.095461 TGAGAGGAGATGACCGACTTG 58.905 52.381 0.00 0.00 34.73 3.16
1984 12965 2.290960 TGAGAGGAGATGACCGACTTGA 60.291 50.000 0.00 0.00 34.73 3.02
1985 12966 2.096248 AGAGGAGATGACCGACTTGAC 58.904 52.381 0.00 0.00 34.73 3.18
1986 12967 0.811915 AGGAGATGACCGACTTGACG 59.188 55.000 0.00 0.00 34.73 4.35
1987 12968 0.809385 GGAGATGACCGACTTGACGA 59.191 55.000 0.00 0.00 35.09 4.20
1988 12969 1.202200 GGAGATGACCGACTTGACGAG 60.202 57.143 0.00 0.00 35.09 4.18
1989 12970 1.738350 GAGATGACCGACTTGACGAGA 59.262 52.381 0.00 0.00 35.09 4.04
1990 12971 1.740585 AGATGACCGACTTGACGAGAG 59.259 52.381 0.00 0.00 35.09 3.20
2001 12982 4.635925 ACGAGAGTTGTGCGTCTG 57.364 55.556 0.00 0.00 46.40 3.51
2002 12983 2.030551 ACGAGAGTTGTGCGTCTGA 58.969 52.632 0.00 0.00 46.40 3.27
2003 12984 0.598562 ACGAGAGTTGTGCGTCTGAT 59.401 50.000 0.00 0.00 46.40 2.90
2004 12985 1.810755 ACGAGAGTTGTGCGTCTGATA 59.189 47.619 0.00 0.00 46.40 2.15
2005 12986 2.159503 ACGAGAGTTGTGCGTCTGATAG 60.160 50.000 0.00 0.00 46.40 2.08
2006 12987 2.189342 GAGAGTTGTGCGTCTGATAGC 58.811 52.381 1.85 1.85 0.00 2.97
2007 12988 0.917259 GAGTTGTGCGTCTGATAGCG 59.083 55.000 4.17 0.00 35.87 4.26
2008 12989 0.243907 AGTTGTGCGTCTGATAGCGT 59.756 50.000 4.17 0.00 35.87 5.07
2009 12990 0.366871 GTTGTGCGTCTGATAGCGTG 59.633 55.000 4.17 0.00 35.87 5.34
2010 12991 0.735978 TTGTGCGTCTGATAGCGTGG 60.736 55.000 4.17 0.00 35.87 4.94
2011 12992 1.153823 GTGCGTCTGATAGCGTGGT 60.154 57.895 4.17 0.00 35.87 4.16
2012 12993 1.153842 TGCGTCTGATAGCGTGGTG 60.154 57.895 4.17 0.00 35.87 4.17
2013 12994 1.153823 GCGTCTGATAGCGTGGTGT 60.154 57.895 0.00 0.00 0.00 4.16
2014 12995 0.736325 GCGTCTGATAGCGTGGTGTT 60.736 55.000 0.00 0.00 0.00 3.32
2015 12996 1.710013 CGTCTGATAGCGTGGTGTTT 58.290 50.000 0.00 0.00 0.00 2.83
2016 12997 2.066262 CGTCTGATAGCGTGGTGTTTT 58.934 47.619 0.00 0.00 0.00 2.43
2017 12998 2.159841 CGTCTGATAGCGTGGTGTTTTG 60.160 50.000 0.00 0.00 0.00 2.44
2018 12999 1.804151 TCTGATAGCGTGGTGTTTTGC 59.196 47.619 0.00 0.00 0.00 3.68
2019 13000 1.535028 CTGATAGCGTGGTGTTTTGCA 59.465 47.619 0.00 0.00 0.00 4.08
2020 13001 1.265635 TGATAGCGTGGTGTTTTGCAC 59.734 47.619 0.00 0.00 46.97 4.57
2029 13010 2.888834 GTGTTTTGCACATCCCAAGT 57.111 45.000 0.00 0.00 46.91 3.16
2030 13011 2.472816 GTGTTTTGCACATCCCAAGTG 58.527 47.619 0.00 0.00 46.91 3.16
2031 13012 1.411977 TGTTTTGCACATCCCAAGTGG 59.588 47.619 0.00 0.00 37.46 4.00
2032 13013 1.412343 GTTTTGCACATCCCAAGTGGT 59.588 47.619 0.00 0.00 37.46 4.16
2033 13014 1.786937 TTTGCACATCCCAAGTGGTT 58.213 45.000 0.00 0.00 37.46 3.67
2034 13015 2.666272 TTGCACATCCCAAGTGGTTA 57.334 45.000 0.00 0.00 37.46 2.85
2035 13016 2.666272 TGCACATCCCAAGTGGTTAA 57.334 45.000 0.00 0.00 37.46 2.01
2036 13017 3.168035 TGCACATCCCAAGTGGTTAAT 57.832 42.857 0.00 0.00 37.46 1.40
2037 13018 3.505386 TGCACATCCCAAGTGGTTAATT 58.495 40.909 0.00 0.00 37.46 1.40
2038 13019 3.900601 TGCACATCCCAAGTGGTTAATTT 59.099 39.130 0.00 0.00 37.46 1.82
2039 13020 4.346418 TGCACATCCCAAGTGGTTAATTTT 59.654 37.500 0.00 0.00 37.46 1.82
2040 13021 4.929211 GCACATCCCAAGTGGTTAATTTTC 59.071 41.667 0.00 0.00 37.46 2.29
2041 13022 5.279456 GCACATCCCAAGTGGTTAATTTTCT 60.279 40.000 0.00 0.00 37.46 2.52
2042 13023 6.158598 CACATCCCAAGTGGTTAATTTTCTG 58.841 40.000 0.00 0.00 33.43 3.02
2043 13024 5.245977 ACATCCCAAGTGGTTAATTTTCTGG 59.754 40.000 0.00 0.00 34.77 3.86
2046 13027 3.574614 CAAGTGGTTAATTTTCTGGCCG 58.425 45.455 0.00 0.00 0.00 6.13
2088 13069 4.870426 AGACGATATCATTTGAAAGCACGT 59.130 37.500 3.12 0.00 0.00 4.49
2093 13074 2.980586 TCATTTGAAAGCACGTGAACG 58.019 42.857 22.23 0.40 46.33 3.95
2097 13078 1.859383 TGAAAGCACGTGAACGATGA 58.141 45.000 22.23 0.00 43.02 2.92
2112 13093 2.551032 ACGATGAGATATACACGGCGAA 59.449 45.455 16.62 0.00 0.00 4.70
2122 13103 1.180029 ACACGGCGAACACTACCTAT 58.820 50.000 16.62 0.00 0.00 2.57
2144 13125 0.393537 AGCTCAATTTCTCGGCCTGG 60.394 55.000 0.00 0.00 0.00 4.45
2223 13205 1.457823 TTGCTTGGTTGGCTCTGCAG 61.458 55.000 7.63 7.63 0.00 4.41
2234 13216 2.105477 TGGCTCTGCAGGATAGGATTTC 59.895 50.000 15.13 0.00 0.00 2.17
2241 13223 2.224161 GCAGGATAGGATTTCGACTGCT 60.224 50.000 10.56 3.11 44.56 4.24
2256 13238 1.002430 ACTGCTGATCGCTTGGAGAAA 59.998 47.619 10.16 0.00 40.11 2.52
2300 13282 2.785425 GCCCGCTATGCAAAAGGGG 61.785 63.158 21.89 21.89 44.52 4.79
2313 13295 0.848053 AAAGGGGACAAGAAACGGGA 59.152 50.000 0.00 0.00 0.00 5.14
2340 13322 3.006967 ACCTCTTTGTCAAGTGTCGCTAT 59.993 43.478 0.00 0.00 0.00 2.97
2399 13381 3.049674 CGCGCACATGGACACCTT 61.050 61.111 8.75 0.00 0.00 3.50
2400 13382 2.562912 GCGCACATGGACACCTTG 59.437 61.111 0.30 0.00 35.21 3.61
2405 13387 2.722094 GCACATGGACACCTTGGAATA 58.278 47.619 0.00 0.00 33.63 1.75
2406 13388 3.088532 GCACATGGACACCTTGGAATAA 58.911 45.455 0.00 0.00 33.63 1.40
2420 13402 8.960591 CACCTTGGAATAACAGTTAGATGAAAT 58.039 33.333 0.00 0.00 0.00 2.17
2439 13421 2.093306 TCGTTATTGAGTGGTGGCAG 57.907 50.000 0.00 0.00 0.00 4.85
2453 13435 0.882927 TGGCAGAAAAGAACCGACGG 60.883 55.000 13.61 13.61 0.00 4.79
2488 13470 2.436646 ACGCAATGGCTTCCCTCG 60.437 61.111 0.00 0.00 38.10 4.63
2489 13471 2.436646 CGCAATGGCTTCCCTCGT 60.437 61.111 0.00 0.00 38.10 4.18
2502 13484 1.084370 CCCTCGTCATGCTCGTTTCC 61.084 60.000 9.23 0.00 0.00 3.13
2526 13508 5.582953 TGGACCATTTGGAATGAGAGAAAT 58.417 37.500 3.01 0.00 38.94 2.17
2578 13560 2.344025 CGCCAGTACTCTTAACCAACC 58.656 52.381 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 4125 4.415512 TGCCTAAATAGGGGAGCTACAAAT 59.584 41.667 8.52 0.00 43.82 2.32
80 4132 2.959465 ACATGCCTAAATAGGGGAGC 57.041 50.000 8.52 0.00 43.82 4.70
82 4134 4.277476 CACAAACATGCCTAAATAGGGGA 58.723 43.478 8.52 0.00 43.82 4.81
103 4165 0.250234 AGGTCGCTTGAGCAATAGCA 59.750 50.000 3.65 0.00 45.49 3.49
106 4168 9.502091 AAAATATATAAGGTCGCTTGAGCAATA 57.498 29.630 3.65 0.00 42.59 1.90
282 4881 4.770795 ACTTGGTAGATGGTGCATAACTC 58.229 43.478 0.00 0.00 0.00 3.01
348 8335 2.496470 ACTAGACAAACTAAGGGCTCGG 59.504 50.000 0.00 0.00 0.00 4.63
530 8518 8.452868 ACCCCCTCTATATCTACATATCATCTC 58.547 40.741 0.00 0.00 0.00 2.75
531 8519 8.231007 CACCCCCTCTATATCTACATATCATCT 58.769 40.741 0.00 0.00 0.00 2.90
532 8520 7.039363 GCACCCCCTCTATATCTACATATCATC 60.039 44.444 0.00 0.00 0.00 2.92
533 8521 6.784969 GCACCCCCTCTATATCTACATATCAT 59.215 42.308 0.00 0.00 0.00 2.45
534 8522 6.136857 GCACCCCCTCTATATCTACATATCA 58.863 44.000 0.00 0.00 0.00 2.15
535 8523 6.136857 TGCACCCCCTCTATATCTACATATC 58.863 44.000 0.00 0.00 0.00 1.63
536 8524 6.105122 TGCACCCCCTCTATATCTACATAT 57.895 41.667 0.00 0.00 0.00 1.78
537 8525 5.546035 TGCACCCCCTCTATATCTACATA 57.454 43.478 0.00 0.00 0.00 2.29
538 8526 4.419984 TGCACCCCCTCTATATCTACAT 57.580 45.455 0.00 0.00 0.00 2.29
539 8527 3.915346 TGCACCCCCTCTATATCTACA 57.085 47.619 0.00 0.00 0.00 2.74
540 8528 3.381908 CGATGCACCCCCTCTATATCTAC 59.618 52.174 0.00 0.00 0.00 2.59
541 8529 3.268595 TCGATGCACCCCCTCTATATCTA 59.731 47.826 0.00 0.00 0.00 1.98
542 8530 2.043115 TCGATGCACCCCCTCTATATCT 59.957 50.000 0.00 0.00 0.00 1.98
543 8531 2.428890 CTCGATGCACCCCCTCTATATC 59.571 54.545 0.00 0.00 0.00 1.63
544 8532 2.043115 TCTCGATGCACCCCCTCTATAT 59.957 50.000 0.00 0.00 0.00 0.86
545 8533 1.427753 TCTCGATGCACCCCCTCTATA 59.572 52.381 0.00 0.00 0.00 1.31
546 8534 0.188587 TCTCGATGCACCCCCTCTAT 59.811 55.000 0.00 0.00 0.00 1.98
547 8535 0.032515 TTCTCGATGCACCCCCTCTA 60.033 55.000 0.00 0.00 0.00 2.43
548 8536 0.909610 TTTCTCGATGCACCCCCTCT 60.910 55.000 0.00 0.00 0.00 3.69
549 8537 0.744771 GTTTCTCGATGCACCCCCTC 60.745 60.000 0.00 0.00 0.00 4.30
550 8538 1.299976 GTTTCTCGATGCACCCCCT 59.700 57.895 0.00 0.00 0.00 4.79
551 8539 1.749258 GGTTTCTCGATGCACCCCC 60.749 63.158 0.00 0.00 0.00 5.40
552 8540 1.749258 GGGTTTCTCGATGCACCCC 60.749 63.158 12.99 3.75 42.96 4.95
553 8541 3.905249 GGGTTTCTCGATGCACCC 58.095 61.111 9.65 9.65 42.33 4.61
554 8542 0.321653 ACTGGGTTTCTCGATGCACC 60.322 55.000 0.00 0.00 0.00 5.01
555 8543 2.380084 TACTGGGTTTCTCGATGCAC 57.620 50.000 0.00 0.00 0.00 4.57
556 8544 2.354704 CCTTACTGGGTTTCTCGATGCA 60.355 50.000 0.00 0.00 0.00 3.96
557 8545 2.093658 TCCTTACTGGGTTTCTCGATGC 60.094 50.000 0.00 0.00 36.20 3.91
558 8546 3.887621 TCCTTACTGGGTTTCTCGATG 57.112 47.619 0.00 0.00 36.20 3.84
559 8547 4.469945 TCATTCCTTACTGGGTTTCTCGAT 59.530 41.667 0.00 0.00 36.20 3.59
560 8548 3.835978 TCATTCCTTACTGGGTTTCTCGA 59.164 43.478 0.00 0.00 36.20 4.04
561 8549 3.933332 GTCATTCCTTACTGGGTTTCTCG 59.067 47.826 0.00 0.00 36.20 4.04
614 8642 1.134367 CATGCATGCAGTTCCTGGAAG 59.866 52.381 26.69 0.00 35.08 3.46
702 9009 2.794631 GCATTTTTGGCCGACGATAAGG 60.795 50.000 0.00 0.00 0.00 2.69
741 9048 0.809636 TATTCTCACCACGCATGCCG 60.810 55.000 13.15 10.04 44.21 5.69
742 9049 1.265095 CATATTCTCACCACGCATGCC 59.735 52.381 13.15 0.00 0.00 4.40
760 9073 3.815856 AGTGATTCAGACGCATCTCAT 57.184 42.857 0.00 0.00 30.42 2.90
781 9096 6.480320 GCTAGCTTTACTAATGCATGTGTAGT 59.520 38.462 7.70 12.85 34.29 2.73
782 9097 6.703607 AGCTAGCTTTACTAATGCATGTGTAG 59.296 38.462 12.68 0.55 34.29 2.74
783 9098 6.582636 AGCTAGCTTTACTAATGCATGTGTA 58.417 36.000 12.68 3.86 34.29 2.90
784 9099 5.431765 AGCTAGCTTTACTAATGCATGTGT 58.568 37.500 12.68 4.95 34.29 3.72
866 9181 3.996363 CAGTACAAAGTGCACTGCAGATA 59.004 43.478 22.49 6.31 40.08 1.98
882 9197 0.665068 CGCACGCAACTACCAGTACA 60.665 55.000 0.00 0.00 0.00 2.90
915 9230 5.588648 AGGCATGGTATAAATACACACACAC 59.411 40.000 0.00 0.00 34.98 3.82
916 9231 5.750524 AGGCATGGTATAAATACACACACA 58.249 37.500 0.00 0.00 34.98 3.72
945 9263 1.302271 CTGCCTCTGCTGTGAAGCA 60.302 57.895 0.00 0.00 43.22 3.91
952 9270 3.432588 GCTGCACTGCCTCTGCTG 61.433 66.667 0.00 0.00 41.75 4.41
976 9294 2.125912 CACAAGGAGCTAGCGCGT 60.126 61.111 12.54 10.25 42.32 6.01
1022 9354 2.752358 CTCCAGCTCCAGCACCAA 59.248 61.111 0.48 0.00 45.16 3.67
1023 9355 4.025858 GCTCCAGCTCCAGCACCA 62.026 66.667 8.33 0.00 45.16 4.17
1176 10352 8.824159 AGATAAGACGATTTTGATCGATCATT 57.176 30.769 27.75 18.02 46.12 2.57
1177 10353 8.824159 AAGATAAGACGATTTTGATCGATCAT 57.176 30.769 27.75 14.15 46.12 2.45
1178 10354 8.648557 AAAGATAAGACGATTTTGATCGATCA 57.351 30.769 23.99 23.99 46.12 2.92
1179 10355 9.574401 GAAAAGATAAGACGATTTTGATCGATC 57.426 33.333 18.72 18.72 46.12 3.69
1200 10376 3.243068 CCCGGCCGATAAGAAATGAAAAG 60.243 47.826 30.73 2.89 0.00 2.27
1205 10381 1.841663 CGCCCGGCCGATAAGAAATG 61.842 60.000 30.73 5.91 0.00 2.32
1225 10401 2.296752 CCATCAGTGCTCGAGATCATCT 59.703 50.000 18.75 3.12 0.00 2.90
1267 12239 1.537638 CTCAGCGCGGTATCAGTCTAT 59.462 52.381 11.92 0.00 0.00 1.98
1341 12313 3.695606 TGAGGAGCACGACCAGCC 61.696 66.667 0.00 0.00 0.00 4.85
1542 12514 1.712977 GAGGACGAGTATGACGCGGT 61.713 60.000 12.47 0.00 45.57 5.68
1551 12523 0.745845 GGCGTGGTAGAGGACGAGTA 60.746 60.000 0.00 0.00 37.81 2.59
1552 12524 2.045131 GGCGTGGTAGAGGACGAGT 61.045 63.158 0.00 0.00 37.81 4.18
1638 12610 2.869636 AGCCAGCTTGCTGATGAAG 58.130 52.632 22.50 7.67 40.90 3.02
1667 12639 1.132262 GAGAGGTGCAGTCGAAGAGAG 59.868 57.143 0.00 0.00 36.95 3.20
1671 12643 4.467232 CGAGAGGTGCAGTCGAAG 57.533 61.111 0.00 0.00 35.70 3.79
1732 12710 2.193127 ACCACGATGGGGTTATTGAGA 58.807 47.619 8.57 0.00 43.37 3.27
1740 12718 9.643735 TTATTTATTATTAAACCACGATGGGGT 57.356 29.630 8.57 0.00 43.37 4.95
1771 12749 4.562757 GGTCCACTGACAGCACACTAATTA 60.563 45.833 1.25 0.00 43.65 1.40
1797 12778 6.248839 GCGATCTTAACTACATACAGATACGC 59.751 42.308 0.00 0.00 35.48 4.42
1799 12780 6.248839 GCGCGATCTTAACTACATACAGATAC 59.751 42.308 12.10 0.00 0.00 2.24
1808 12789 1.746787 TCCAGCGCGATCTTAACTACA 59.253 47.619 12.10 0.00 0.00 2.74
1812 12793 1.355971 TTGTCCAGCGCGATCTTAAC 58.644 50.000 12.10 0.00 0.00 2.01
1813 12794 2.309528 ATTGTCCAGCGCGATCTTAA 57.690 45.000 12.10 0.00 0.00 1.85
1814 12795 2.201732 GAATTGTCCAGCGCGATCTTA 58.798 47.619 12.10 0.00 0.00 2.10
1815 12796 1.009829 GAATTGTCCAGCGCGATCTT 58.990 50.000 12.10 0.00 0.00 2.40
1816 12797 0.811616 GGAATTGTCCAGCGCGATCT 60.812 55.000 12.10 0.00 44.26 2.75
1817 12798 1.643832 GGAATTGTCCAGCGCGATC 59.356 57.895 12.10 0.00 44.26 3.69
1818 12799 3.813596 GGAATTGTCCAGCGCGAT 58.186 55.556 12.10 0.00 44.26 4.58
1847 12828 1.197721 CTTGTCCAGCGCGATCTTTTT 59.802 47.619 12.10 0.00 0.00 1.94
1848 12829 0.798776 CTTGTCCAGCGCGATCTTTT 59.201 50.000 12.10 0.00 0.00 2.27
1849 12830 0.037326 TCTTGTCCAGCGCGATCTTT 60.037 50.000 12.10 0.00 0.00 2.52
1850 12831 0.176680 ATCTTGTCCAGCGCGATCTT 59.823 50.000 12.10 0.00 0.00 2.40
1851 12832 0.529337 CATCTTGTCCAGCGCGATCT 60.529 55.000 12.10 0.00 0.00 2.75
1852 12833 0.807667 ACATCTTGTCCAGCGCGATC 60.808 55.000 12.10 0.00 0.00 3.69
1853 12834 1.086067 CACATCTTGTCCAGCGCGAT 61.086 55.000 12.10 0.00 0.00 4.58
1854 12835 1.737735 CACATCTTGTCCAGCGCGA 60.738 57.895 12.10 0.00 0.00 5.87
1855 12836 2.743752 CCACATCTTGTCCAGCGCG 61.744 63.158 0.00 0.00 0.00 6.86
1856 12837 1.364626 CTCCACATCTTGTCCAGCGC 61.365 60.000 0.00 0.00 0.00 5.92
1857 12838 0.247460 TCTCCACATCTTGTCCAGCG 59.753 55.000 0.00 0.00 0.00 5.18
1858 12839 2.706339 ATCTCCACATCTTGTCCAGC 57.294 50.000 0.00 0.00 0.00 4.85
1859 12840 5.583854 CAGTTAATCTCCACATCTTGTCCAG 59.416 44.000 0.00 0.00 0.00 3.86
1860 12841 5.013079 ACAGTTAATCTCCACATCTTGTCCA 59.987 40.000 0.00 0.00 0.00 4.02
1861 12842 5.491982 ACAGTTAATCTCCACATCTTGTCC 58.508 41.667 0.00 0.00 0.00 4.02
1862 12843 7.440523 AAACAGTTAATCTCCACATCTTGTC 57.559 36.000 0.00 0.00 0.00 3.18
1863 12844 7.823745 AAAACAGTTAATCTCCACATCTTGT 57.176 32.000 0.00 0.00 0.00 3.16
1864 12845 8.237267 GGTAAAACAGTTAATCTCCACATCTTG 58.763 37.037 0.00 0.00 0.00 3.02
1865 12846 7.942341 TGGTAAAACAGTTAATCTCCACATCTT 59.058 33.333 0.00 0.00 0.00 2.40
1866 12847 7.458397 TGGTAAAACAGTTAATCTCCACATCT 58.542 34.615 0.00 0.00 0.00 2.90
1867 12848 7.681939 TGGTAAAACAGTTAATCTCCACATC 57.318 36.000 0.00 0.00 0.00 3.06
1868 12849 8.522830 CAATGGTAAAACAGTTAATCTCCACAT 58.477 33.333 0.00 0.00 0.00 3.21
1869 12850 7.523052 GCAATGGTAAAACAGTTAATCTCCACA 60.523 37.037 0.00 0.00 0.00 4.17
1870 12851 6.806739 GCAATGGTAAAACAGTTAATCTCCAC 59.193 38.462 0.00 0.00 0.00 4.02
1871 12852 6.348950 CGCAATGGTAAAACAGTTAATCTCCA 60.349 38.462 0.00 0.00 0.00 3.86
1872 12853 6.027749 CGCAATGGTAAAACAGTTAATCTCC 58.972 40.000 0.00 0.00 0.00 3.71
1873 12854 6.608610 ACGCAATGGTAAAACAGTTAATCTC 58.391 36.000 0.00 0.00 0.00 2.75
1874 12855 6.569179 ACGCAATGGTAAAACAGTTAATCT 57.431 33.333 0.00 0.00 0.00 2.40
1875 12856 6.639279 ACAACGCAATGGTAAAACAGTTAATC 59.361 34.615 0.00 0.00 0.00 1.75
1876 12857 6.508777 ACAACGCAATGGTAAAACAGTTAAT 58.491 32.000 0.00 0.00 0.00 1.40
1877 12858 5.892568 ACAACGCAATGGTAAAACAGTTAA 58.107 33.333 0.00 0.00 0.00 2.01
1878 12859 5.502153 ACAACGCAATGGTAAAACAGTTA 57.498 34.783 0.00 0.00 0.00 2.24
1879 12860 4.379339 ACAACGCAATGGTAAAACAGTT 57.621 36.364 0.00 0.00 0.00 3.16
1880 12861 4.379339 AACAACGCAATGGTAAAACAGT 57.621 36.364 0.00 0.00 0.00 3.55
1881 12862 9.944663 ATATATAACAACGCAATGGTAAAACAG 57.055 29.630 0.00 0.00 0.00 3.16
1882 12863 9.723447 CATATATAACAACGCAATGGTAAAACA 57.277 29.630 0.00 0.00 0.00 2.83
1883 12864 9.176181 CCATATATAACAACGCAATGGTAAAAC 57.824 33.333 0.00 0.00 0.00 2.43
1884 12865 8.904834 ACCATATATAACAACGCAATGGTAAAA 58.095 29.630 2.36 0.00 42.80 1.52
1924 12905 3.506059 CTCTCATAGTGCCGCCGGG 62.506 68.421 4.77 0.00 0.00 5.73
1925 12906 2.028190 CTCTCATAGTGCCGCCGG 59.972 66.667 0.00 0.00 0.00 6.13
1926 12907 2.028190 CCTCTCATAGTGCCGCCG 59.972 66.667 0.00 0.00 0.00 6.46
1927 12908 2.280457 GCCTCTCATAGTGCCGCC 60.280 66.667 0.00 0.00 0.00 6.13
1928 12909 1.070445 ATGCCTCTCATAGTGCCGC 59.930 57.895 0.00 0.00 32.59 6.53
1929 12910 0.390492 TCATGCCTCTCATAGTGCCG 59.610 55.000 0.00 0.00 33.19 5.69
1930 12911 2.855209 ATCATGCCTCTCATAGTGCC 57.145 50.000 0.00 0.00 33.19 5.01
1931 12912 4.462132 TCTCTATCATGCCTCTCATAGTGC 59.538 45.833 0.00 0.00 33.19 4.40
1932 12913 6.433716 TCTTCTCTATCATGCCTCTCATAGTG 59.566 42.308 0.00 0.00 33.19 2.74
1933 12914 6.434028 GTCTTCTCTATCATGCCTCTCATAGT 59.566 42.308 0.00 0.00 33.19 2.12
1934 12915 6.127647 GGTCTTCTCTATCATGCCTCTCATAG 60.128 46.154 0.00 0.00 33.19 2.23
1935 12916 5.714333 GGTCTTCTCTATCATGCCTCTCATA 59.286 44.000 0.00 0.00 33.19 2.15
1936 12917 4.527816 GGTCTTCTCTATCATGCCTCTCAT 59.472 45.833 0.00 0.00 35.31 2.90
1937 12918 3.894427 GGTCTTCTCTATCATGCCTCTCA 59.106 47.826 0.00 0.00 0.00 3.27
1938 12919 3.057596 CGGTCTTCTCTATCATGCCTCTC 60.058 52.174 0.00 0.00 0.00 3.20
1939 12920 2.890311 CGGTCTTCTCTATCATGCCTCT 59.110 50.000 0.00 0.00 0.00 3.69
1940 12921 2.625790 ACGGTCTTCTCTATCATGCCTC 59.374 50.000 0.00 0.00 0.00 4.70
1941 12922 2.672098 ACGGTCTTCTCTATCATGCCT 58.328 47.619 0.00 0.00 0.00 4.75
1942 12923 3.460857 AACGGTCTTCTCTATCATGCC 57.539 47.619 0.00 0.00 0.00 4.40
1943 12924 4.433615 TCAAACGGTCTTCTCTATCATGC 58.566 43.478 0.00 0.00 0.00 4.06
1944 12925 5.895928 TCTCAAACGGTCTTCTCTATCATG 58.104 41.667 0.00 0.00 0.00 3.07
1945 12926 5.068460 CCTCTCAAACGGTCTTCTCTATCAT 59.932 44.000 0.00 0.00 0.00 2.45
1946 12927 4.399618 CCTCTCAAACGGTCTTCTCTATCA 59.600 45.833 0.00 0.00 0.00 2.15
1947 12928 4.641094 TCCTCTCAAACGGTCTTCTCTATC 59.359 45.833 0.00 0.00 0.00 2.08
1948 12929 4.601084 TCCTCTCAAACGGTCTTCTCTAT 58.399 43.478 0.00 0.00 0.00 1.98
1949 12930 4.011023 CTCCTCTCAAACGGTCTTCTCTA 58.989 47.826 0.00 0.00 0.00 2.43
1950 12931 2.823154 CTCCTCTCAAACGGTCTTCTCT 59.177 50.000 0.00 0.00 0.00 3.10
1951 12932 2.820787 TCTCCTCTCAAACGGTCTTCTC 59.179 50.000 0.00 0.00 0.00 2.87
1952 12933 2.877866 TCTCCTCTCAAACGGTCTTCT 58.122 47.619 0.00 0.00 0.00 2.85
1953 12934 3.193691 TCATCTCCTCTCAAACGGTCTTC 59.806 47.826 0.00 0.00 0.00 2.87
1954 12935 3.056465 GTCATCTCCTCTCAAACGGTCTT 60.056 47.826 0.00 0.00 0.00 3.01
1955 12936 2.494073 GTCATCTCCTCTCAAACGGTCT 59.506 50.000 0.00 0.00 0.00 3.85
1956 12937 2.417515 GGTCATCTCCTCTCAAACGGTC 60.418 54.545 0.00 0.00 0.00 4.79
1957 12938 1.550976 GGTCATCTCCTCTCAAACGGT 59.449 52.381 0.00 0.00 0.00 4.83
1958 12939 1.469940 CGGTCATCTCCTCTCAAACGG 60.470 57.143 0.00 0.00 0.00 4.44
1959 12940 1.472878 TCGGTCATCTCCTCTCAAACG 59.527 52.381 0.00 0.00 0.00 3.60
1960 12941 2.494073 AGTCGGTCATCTCCTCTCAAAC 59.506 50.000 0.00 0.00 0.00 2.93
1961 12942 2.808919 AGTCGGTCATCTCCTCTCAAA 58.191 47.619 0.00 0.00 0.00 2.69
1962 12943 2.493675 CAAGTCGGTCATCTCCTCTCAA 59.506 50.000 0.00 0.00 0.00 3.02
1963 12944 2.095461 CAAGTCGGTCATCTCCTCTCA 58.905 52.381 0.00 0.00 0.00 3.27
1964 12945 2.098443 GTCAAGTCGGTCATCTCCTCTC 59.902 54.545 0.00 0.00 0.00 3.20
1965 12946 2.096248 GTCAAGTCGGTCATCTCCTCT 58.904 52.381 0.00 0.00 0.00 3.69
1966 12947 1.202200 CGTCAAGTCGGTCATCTCCTC 60.202 57.143 0.00 0.00 0.00 3.71
1967 12948 0.811915 CGTCAAGTCGGTCATCTCCT 59.188 55.000 0.00 0.00 0.00 3.69
1968 12949 0.809385 TCGTCAAGTCGGTCATCTCC 59.191 55.000 0.00 0.00 0.00 3.71
1969 12950 1.738350 TCTCGTCAAGTCGGTCATCTC 59.262 52.381 0.00 0.00 0.00 2.75
1970 12951 1.740585 CTCTCGTCAAGTCGGTCATCT 59.259 52.381 0.00 0.00 0.00 2.90
1971 12952 1.469308 ACTCTCGTCAAGTCGGTCATC 59.531 52.381 0.00 0.00 0.00 2.92
1972 12953 1.535833 ACTCTCGTCAAGTCGGTCAT 58.464 50.000 0.00 0.00 0.00 3.06
1973 12954 1.001706 CAACTCTCGTCAAGTCGGTCA 60.002 52.381 0.00 0.00 0.00 4.02
1974 12955 1.001597 ACAACTCTCGTCAAGTCGGTC 60.002 52.381 0.00 0.00 0.00 4.79
1975 12956 1.030457 ACAACTCTCGTCAAGTCGGT 58.970 50.000 0.00 0.00 0.00 4.69
1976 12957 1.409412 CACAACTCTCGTCAAGTCGG 58.591 55.000 0.00 0.00 0.00 4.79
1977 12958 0.778815 GCACAACTCTCGTCAAGTCG 59.221 55.000 0.00 0.00 0.00 4.18
1978 12959 0.778815 CGCACAACTCTCGTCAAGTC 59.221 55.000 0.00 0.00 0.00 3.01
1979 12960 0.102481 ACGCACAACTCTCGTCAAGT 59.898 50.000 0.00 0.00 0.00 3.16
1980 12961 2.886859 ACGCACAACTCTCGTCAAG 58.113 52.632 0.00 0.00 0.00 3.02
1984 12965 0.598562 ATCAGACGCACAACTCTCGT 59.401 50.000 0.00 0.00 39.33 4.18
1985 12966 2.445316 CTATCAGACGCACAACTCTCG 58.555 52.381 0.00 0.00 0.00 4.04
1986 12967 2.189342 GCTATCAGACGCACAACTCTC 58.811 52.381 0.00 0.00 0.00 3.20
1987 12968 1.468224 CGCTATCAGACGCACAACTCT 60.468 52.381 0.00 0.00 0.00 3.24
1988 12969 0.917259 CGCTATCAGACGCACAACTC 59.083 55.000 0.00 0.00 0.00 3.01
1989 12970 0.243907 ACGCTATCAGACGCACAACT 59.756 50.000 0.00 0.00 0.00 3.16
1990 12971 0.366871 CACGCTATCAGACGCACAAC 59.633 55.000 0.00 0.00 0.00 3.32
1991 12972 0.735978 CCACGCTATCAGACGCACAA 60.736 55.000 0.00 0.00 0.00 3.33
1992 12973 1.153842 CCACGCTATCAGACGCACA 60.154 57.895 0.00 0.00 0.00 4.57
1993 12974 1.153823 ACCACGCTATCAGACGCAC 60.154 57.895 0.00 0.00 0.00 5.34
1994 12975 1.153842 CACCACGCTATCAGACGCA 60.154 57.895 0.00 0.00 0.00 5.24
1995 12976 0.736325 AACACCACGCTATCAGACGC 60.736 55.000 0.00 0.00 0.00 5.19
1996 12977 1.710013 AAACACCACGCTATCAGACG 58.290 50.000 0.00 0.00 0.00 4.18
1997 12978 2.412847 GCAAAACACCACGCTATCAGAC 60.413 50.000 0.00 0.00 0.00 3.51
1998 12979 1.804151 GCAAAACACCACGCTATCAGA 59.196 47.619 0.00 0.00 0.00 3.27
1999 12980 1.535028 TGCAAAACACCACGCTATCAG 59.465 47.619 0.00 0.00 0.00 2.90
2000 12981 1.265635 GTGCAAAACACCACGCTATCA 59.734 47.619 0.00 0.00 44.02 2.15
2001 12982 1.963747 GTGCAAAACACCACGCTATC 58.036 50.000 0.00 0.00 44.02 2.08
2009 12990 5.904584 CCACTTGGGATGTGCAAAACACC 62.905 52.174 0.00 0.00 44.18 4.16
2010 12991 2.802774 CCACTTGGGATGTGCAAAACAC 60.803 50.000 0.00 0.00 43.06 3.32
2011 12992 1.411977 CCACTTGGGATGTGCAAAACA 59.588 47.619 0.00 0.00 44.79 2.83
2012 12993 1.412343 ACCACTTGGGATGTGCAAAAC 59.588 47.619 0.00 0.00 41.15 2.43
2013 12994 1.786937 ACCACTTGGGATGTGCAAAA 58.213 45.000 0.00 0.00 41.15 2.44
2014 12995 1.786937 AACCACTTGGGATGTGCAAA 58.213 45.000 0.00 0.00 41.15 3.68
2015 12996 2.666272 TAACCACTTGGGATGTGCAA 57.334 45.000 0.00 0.00 41.15 4.08
2016 12997 2.666272 TTAACCACTTGGGATGTGCA 57.334 45.000 0.00 0.00 41.15 4.57
2017 12998 4.535526 AAATTAACCACTTGGGATGTGC 57.464 40.909 0.00 0.00 41.15 4.57
2018 12999 6.158598 CAGAAAATTAACCACTTGGGATGTG 58.841 40.000 0.00 0.00 41.15 3.21
2019 13000 5.245977 CCAGAAAATTAACCACTTGGGATGT 59.754 40.000 0.00 0.00 41.15 3.06
2020 13001 5.723295 CCAGAAAATTAACCACTTGGGATG 58.277 41.667 0.00 0.00 41.15 3.51
2021 13002 4.222810 GCCAGAAAATTAACCACTTGGGAT 59.777 41.667 0.00 0.00 41.15 3.85
2022 13003 3.576550 GCCAGAAAATTAACCACTTGGGA 59.423 43.478 0.00 0.00 41.15 4.37
2023 13004 3.306710 GGCCAGAAAATTAACCACTTGGG 60.307 47.826 0.00 0.00 44.81 4.12
2024 13005 3.613910 CGGCCAGAAAATTAACCACTTGG 60.614 47.826 2.24 0.00 42.17 3.61
2025 13006 3.574614 CGGCCAGAAAATTAACCACTTG 58.425 45.455 2.24 0.00 0.00 3.16
2026 13007 2.029380 GCGGCCAGAAAATTAACCACTT 60.029 45.455 2.24 0.00 0.00 3.16
2027 13008 1.544246 GCGGCCAGAAAATTAACCACT 59.456 47.619 2.24 0.00 0.00 4.00
2028 13009 1.403647 GGCGGCCAGAAAATTAACCAC 60.404 52.381 15.62 0.00 0.00 4.16
2029 13010 0.892063 GGCGGCCAGAAAATTAACCA 59.108 50.000 15.62 0.00 0.00 3.67
2030 13011 1.182667 AGGCGGCCAGAAAATTAACC 58.817 50.000 23.09 0.00 0.00 2.85
2031 13012 2.230266 TCAAGGCGGCCAGAAAATTAAC 59.770 45.455 23.09 0.00 0.00 2.01
2032 13013 2.520069 TCAAGGCGGCCAGAAAATTAA 58.480 42.857 23.09 0.00 0.00 1.40
2033 13014 2.208132 TCAAGGCGGCCAGAAAATTA 57.792 45.000 23.09 0.00 0.00 1.40
2034 13015 1.205417 CATCAAGGCGGCCAGAAAATT 59.795 47.619 23.09 1.98 0.00 1.82
2035 13016 0.819582 CATCAAGGCGGCCAGAAAAT 59.180 50.000 23.09 4.23 0.00 1.82
2036 13017 0.251121 TCATCAAGGCGGCCAGAAAA 60.251 50.000 23.09 8.22 0.00 2.29
2037 13018 0.677731 CTCATCAAGGCGGCCAGAAA 60.678 55.000 23.09 10.12 0.00 2.52
2038 13019 1.078214 CTCATCAAGGCGGCCAGAA 60.078 57.895 23.09 5.70 0.00 3.02
2039 13020 2.586245 CTCATCAAGGCGGCCAGA 59.414 61.111 23.09 18.62 0.00 3.86
2040 13021 3.207669 GCTCATCAAGGCGGCCAG 61.208 66.667 23.09 13.50 0.00 4.85
2041 13022 3.565961 TTGCTCATCAAGGCGGCCA 62.566 57.895 23.09 0.00 0.00 5.36
2042 13023 2.342650 TTTGCTCATCAAGGCGGCC 61.343 57.895 12.11 12.11 35.84 6.13
2043 13024 1.153958 GTTTGCTCATCAAGGCGGC 60.154 57.895 0.00 0.00 35.84 6.53
2046 13027 0.881118 TTCGGTTTGCTCATCAAGGC 59.119 50.000 0.00 0.00 35.84 4.35
2088 13069 3.608474 CGCCGTGTATATCTCATCGTTCA 60.608 47.826 0.00 0.00 0.00 3.18
2093 13074 3.669122 GTGTTCGCCGTGTATATCTCATC 59.331 47.826 0.00 0.00 0.00 2.92
2097 13078 3.004106 GGTAGTGTTCGCCGTGTATATCT 59.996 47.826 0.00 0.00 0.00 1.98
2112 13093 7.707035 CGAGAAATTGAGCTTTATAGGTAGTGT 59.293 37.037 0.00 0.00 30.79 3.55
2122 13103 3.009723 CAGGCCGAGAAATTGAGCTTTA 58.990 45.455 0.00 0.00 0.00 1.85
2176 13158 2.037847 CTTTGGAGGGGCCCAAGG 59.962 66.667 27.72 7.14 45.89 3.61
2184 13166 5.012046 AGCAAAGAATTTAACCTTTGGAGGG 59.988 40.000 18.21 0.00 45.53 4.30
2223 13205 3.735237 TCAGCAGTCGAAATCCTATCC 57.265 47.619 0.00 0.00 0.00 2.59
2241 13223 1.428448 CACGTTTCTCCAAGCGATCA 58.572 50.000 0.00 0.00 38.42 2.92
2280 13262 1.394266 CCCTTTTGCATAGCGGGCAT 61.394 55.000 0.96 0.00 41.58 4.40
2300 13282 3.671716 AGGTGTATTCCCGTTTCTTGTC 58.328 45.455 0.00 0.00 0.00 3.18
2313 13295 4.750098 CGACACTTGACAAAGAGGTGTATT 59.250 41.667 10.03 0.00 40.54 1.89
2340 13322 4.152284 TGATCTCCAGAGTCTAAGCGTA 57.848 45.455 0.00 0.00 0.00 4.42
2399 13381 8.786826 AACGATTTCATCTAACTGTTATTCCA 57.213 30.769 0.00 0.00 0.00 3.53
2405 13387 9.436957 ACTCAATAACGATTTCATCTAACTGTT 57.563 29.630 0.00 0.00 0.00 3.16
2406 13388 8.873830 CACTCAATAACGATTTCATCTAACTGT 58.126 33.333 0.00 0.00 0.00 3.55
2420 13402 1.621317 TCTGCCACCACTCAATAACGA 59.379 47.619 0.00 0.00 0.00 3.85
2424 13406 4.365514 TCTTTTCTGCCACCACTCAATA 57.634 40.909 0.00 0.00 0.00 1.90
2439 13421 1.206831 GCTGCCGTCGGTTCTTTTC 59.793 57.895 13.94 0.00 0.00 2.29
2488 13470 1.079503 GTCCAGGAAACGAGCATGAC 58.920 55.000 0.00 0.00 0.00 3.06
2489 13471 0.036388 GGTCCAGGAAACGAGCATGA 60.036 55.000 0.00 0.00 0.00 3.07
2502 13484 4.226427 TCTCTCATTCCAAATGGTCCAG 57.774 45.455 0.00 0.00 36.34 3.86
2526 13508 2.777972 CCGACGGAATACTCGGGCA 61.778 63.158 8.64 0.00 44.84 5.36
2562 13544 8.931568 TCTTCTAAAAGGTTGGTTAAGAGTACT 58.068 33.333 0.00 0.00 33.03 2.73
2565 13547 6.704937 CGTCTTCTAAAAGGTTGGTTAAGAGT 59.295 38.462 0.00 0.00 33.03 3.24
2578 13560 6.017357 ACCCAAAGTTTAGCGTCTTCTAAAAG 60.017 38.462 0.00 0.00 39.43 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.