Multiple sequence alignment - TraesCS7A01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G314300 chr7A 100.000 3561 0 0 1 3561 448190220 448193780 0.000000e+00 6577.0
1 TraesCS7A01G314300 chr7A 95.205 292 14 0 2911 3202 694664595 694664886 2.500000e-126 462.0
2 TraesCS7A01G314300 chr7D 92.215 2312 105 35 613 2911 394940762 394943011 0.000000e+00 3203.0
3 TraesCS7A01G314300 chr7D 95.580 362 12 4 3201 3561 394943014 394943372 8.570000e-161 577.0
4 TraesCS7A01G314300 chr7B 93.363 1567 58 22 628 2186 394763220 394764748 0.000000e+00 2276.0
5 TraesCS7A01G314300 chr7B 90.489 757 35 13 2178 2913 394766583 394767323 0.000000e+00 965.0
6 TraesCS7A01G314300 chr7B 82.102 609 96 6 3 604 345573511 345572909 3.170000e-140 508.0
7 TraesCS7A01G314300 chr7B 82.190 612 90 13 3 604 345734661 345734059 3.170000e-140 508.0
8 TraesCS7A01G314300 chr7B 95.897 195 7 1 3242 3435 394767389 394767583 7.420000e-82 315.0
9 TraesCS7A01G314300 chr7B 95.070 142 6 1 3420 3561 394767612 394767752 4.630000e-54 222.0
10 TraesCS7A01G314300 chr4A 84.401 609 82 8 3 603 182122618 182122015 1.420000e-163 586.0
11 TraesCS7A01G314300 chr4A 93.238 281 19 0 2909 3189 541368107 541368387 7.110000e-112 414.0
12 TraesCS7A01G314300 chr4A 90.816 294 25 1 2909 3200 608385662 608385955 3.330000e-105 392.0
13 TraesCS7A01G314300 chr1A 95.681 301 11 1 2911 3209 200379583 200379283 1.920000e-132 483.0
14 TraesCS7A01G314300 chr1A 94.502 291 15 1 2912 3201 592130692 592130402 7.010000e-122 448.0
15 TraesCS7A01G314300 chr5D 93.559 295 19 0 2908 3202 381723804 381723510 1.170000e-119 440.0
16 TraesCS7A01G314300 chr5D 97.059 34 1 0 1539 1572 88358943 88358910 1.380000e-04 58.4
17 TraesCS7A01G314300 chr2A 92.466 292 22 0 2911 3202 637674069 637673778 5.500000e-113 418.0
18 TraesCS7A01G314300 chr6A 92.123 292 19 4 2911 3200 556912065 556911776 3.310000e-110 409.0
19 TraesCS7A01G314300 chr3B 91.379 290 23 2 2912 3201 805458663 805458376 2.580000e-106 396.0
20 TraesCS7A01G314300 chr3D 71.558 443 117 9 166 605 177015087 177015523 1.050000e-20 111.0
21 TraesCS7A01G314300 chr2B 72.819 298 68 9 101 391 402379115 402378824 4.900000e-14 89.8
22 TraesCS7A01G314300 chr1D 69.871 541 141 16 54 582 286396361 286395831 3.810000e-10 76.8
23 TraesCS7A01G314300 chr4B 70.361 388 109 6 219 605 364053564 364053946 1.370000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G314300 chr7A 448190220 448193780 3560 False 6577.0 6577 100.00000 1 3561 1 chr7A.!!$F1 3560
1 TraesCS7A01G314300 chr7D 394940762 394943372 2610 False 1890.0 3203 93.89750 613 3561 2 chr7D.!!$F1 2948
2 TraesCS7A01G314300 chr7B 394763220 394767752 4532 False 944.5 2276 93.70475 628 3561 4 chr7B.!!$F1 2933
3 TraesCS7A01G314300 chr7B 345572909 345573511 602 True 508.0 508 82.10200 3 604 1 chr7B.!!$R1 601
4 TraesCS7A01G314300 chr7B 345734059 345734661 602 True 508.0 508 82.19000 3 604 1 chr7B.!!$R2 601
5 TraesCS7A01G314300 chr4A 182122015 182122618 603 True 586.0 586 84.40100 3 603 1 chr4A.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 51 0.900182 TCCAGACGAGCAGACATGGT 60.900 55.000 0.00 0.00 40.66 3.55 F
338 346 0.952280 TGCGAGATAGGGATCACGAC 59.048 55.000 8.61 2.03 45.63 4.34 F
1152 1162 1.006043 TCTCTGTCGGTGGAGGATTCT 59.994 52.381 0.00 0.00 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 1138 0.101399 CCTCCACCGACAGAGATTCG 59.899 60.0 0.0 0.0 36.2 3.34 R
1754 1767 0.813610 CACGAACACCTCCTGCAACA 60.814 55.0 0.0 0.0 0.0 3.33 R
2958 4845 0.038599 TGATGTGAAGGGCTGCATGT 59.961 50.0 0.5 0.0 0.0 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 4.301628 CAAATGCTTTTGTCTTCTGGTCC 58.698 43.478 15.11 0.00 37.92 4.46
49 51 0.900182 TCCAGACGAGCAGACATGGT 60.900 55.000 0.00 0.00 40.66 3.55
63 65 3.260632 AGACATGGTAATTGGGCAAAACC 59.739 43.478 0.00 0.00 33.49 3.27
64 66 2.028567 ACATGGTAATTGGGCAAAACCG 60.029 45.455 0.00 0.00 40.62 4.44
68 70 2.036089 GGTAATTGGGCAAAACCGTCAA 59.964 45.455 0.00 0.00 40.62 3.18
89 91 7.201609 CGTCAAATGTCTATTGGCTAGCTTAAA 60.202 37.037 15.72 7.55 30.30 1.52
96 98 4.946784 ATTGGCTAGCTTAAAACGACAG 57.053 40.909 15.72 0.00 0.00 3.51
98 100 2.038033 TGGCTAGCTTAAAACGACAGGT 59.962 45.455 15.72 0.00 0.00 4.00
118 120 2.698855 AAGAGTGCCATGAAGCGTAT 57.301 45.000 0.00 0.00 34.65 3.06
133 135 8.641155 CATGAAGCGTATGCCAAATAAATATTG 58.359 33.333 2.51 0.00 44.31 1.90
155 163 1.741770 CCGGGCAAGAGAGTTTCCG 60.742 63.158 0.00 0.00 37.50 4.30
163 171 4.443598 GGCAAGAGAGTTTCCGAATCCTAT 60.444 45.833 0.00 0.00 0.00 2.57
187 195 5.069516 TCCCAAGTAGGATTAATCGTGGTAC 59.930 44.000 18.59 10.26 41.22 3.34
188 196 5.163385 CCCAAGTAGGATTAATCGTGGTACA 60.163 44.000 18.59 0.00 41.22 2.90
197 205 2.103153 ATCGTGGTACATCCCATCCT 57.897 50.000 0.00 0.00 44.52 3.24
208 216 5.246981 ACATCCCATCCTATTGGTATGTG 57.753 43.478 1.45 0.00 42.68 3.21
220 228 4.744795 TTGGTATGTGGCAACTTGTTTT 57.255 36.364 0.00 0.00 37.61 2.43
261 269 2.096909 CACAAAGTAAGCAGACCGAACG 60.097 50.000 0.00 0.00 0.00 3.95
338 346 0.952280 TGCGAGATAGGGATCACGAC 59.048 55.000 8.61 2.03 45.63 4.34
354 362 4.072839 TCACGACTACTCACTGAACATCT 58.927 43.478 0.00 0.00 0.00 2.90
359 367 7.224949 CACGACTACTCACTGAACATCTATAGA 59.775 40.741 4.57 4.57 0.00 1.98
391 399 4.982241 TGTTTGAGAAGGTCTTCATCCT 57.018 40.909 12.54 0.00 41.84 3.24
395 403 6.710744 TGTTTGAGAAGGTCTTCATCCTAAAC 59.289 38.462 12.54 13.52 41.84 2.01
406 414 8.451748 GGTCTTCATCCTAAACATTAAGAACAC 58.548 37.037 0.00 0.00 31.18 3.32
413 421 6.203338 TCCTAAACATTAAGAACACGGTCAAC 59.797 38.462 0.00 0.00 0.00 3.18
430 438 4.395231 GGTCAACCAAATCTGCTACCTTAC 59.605 45.833 0.00 0.00 35.64 2.34
446 454 4.097418 ACCTTACATAGCAACTGACCTCT 58.903 43.478 0.00 0.00 0.00 3.69
452 460 5.265191 ACATAGCAACTGACCTCTCTTAGA 58.735 41.667 0.00 0.00 0.00 2.10
458 466 6.439058 AGCAACTGACCTCTCTTAGAAGTAAT 59.561 38.462 0.00 0.00 0.00 1.89
459 467 7.038658 AGCAACTGACCTCTCTTAGAAGTAATT 60.039 37.037 0.00 0.00 0.00 1.40
482 490 9.469807 AATTATTTTACGATTTGCACAACTTGA 57.530 25.926 0.00 0.00 0.00 3.02
489 497 4.744137 CGATTTGCACAACTTGAAATCCAA 59.256 37.500 0.00 0.00 33.06 3.53
490 498 5.233902 CGATTTGCACAACTTGAAATCCAAA 59.766 36.000 0.00 0.00 33.06 3.28
499 507 5.003096 ACTTGAAATCCAAACATCCTCCT 57.997 39.130 0.00 0.00 33.76 3.69
542 550 2.560981 TCTCTACTCGCCAAATGTGACA 59.439 45.455 0.00 0.00 0.00 3.58
544 552 3.734463 TCTACTCGCCAAATGTGACAAA 58.266 40.909 0.00 0.00 0.00 2.83
583 591 4.156922 CACCCGTCATAATACTTTGCCAAA 59.843 41.667 0.00 0.00 0.00 3.28
594 602 6.916360 ATACTTTGCCAAATGAAGGAAGAA 57.084 33.333 0.00 0.00 0.00 2.52
688 697 1.745489 GATGTGAACGCCCACCTCC 60.745 63.158 5.49 0.00 36.26 4.30
690 699 2.047179 GTGAACGCCCACCTCCTC 60.047 66.667 0.00 0.00 0.00 3.71
691 700 2.525629 TGAACGCCCACCTCCTCA 60.526 61.111 0.00 0.00 0.00 3.86
692 701 2.047179 GAACGCCCACCTCCTCAC 60.047 66.667 0.00 0.00 0.00 3.51
693 702 3.934391 GAACGCCCACCTCCTCACG 62.934 68.421 0.00 0.00 0.00 4.35
742 751 2.190578 CACCCTTCCAGATCCCGC 59.809 66.667 0.00 0.00 0.00 6.13
764 773 3.127533 CCCCGAGCGAAAAGGCAG 61.128 66.667 0.00 0.00 34.64 4.85
1128 1138 4.416738 GAGGTCCACAGGCCTGCC 62.417 72.222 33.06 24.28 34.81 4.85
1152 1162 1.006043 TCTCTGTCGGTGGAGGATTCT 59.994 52.381 0.00 0.00 0.00 2.40
1153 1163 1.407258 CTCTGTCGGTGGAGGATTCTC 59.593 57.143 0.00 0.00 39.25 2.87
1155 1165 1.407258 CTGTCGGTGGAGGATTCTCTC 59.593 57.143 0.00 0.00 39.86 3.20
1204 1214 2.363018 CGGAGGAGGCAGTGGAGA 60.363 66.667 0.00 0.00 0.00 3.71
1205 1215 2.716017 CGGAGGAGGCAGTGGAGAC 61.716 68.421 0.00 0.00 0.00 3.36
1206 1216 2.716017 GGAGGAGGCAGTGGAGACG 61.716 68.421 0.00 0.00 0.00 4.18
1207 1217 3.363844 GAGGAGGCAGTGGAGACGC 62.364 68.421 0.00 0.00 42.66 5.19
1208 1218 4.459089 GGAGGCAGTGGAGACGCC 62.459 72.222 0.00 0.00 43.65 5.68
1209 1219 4.459089 GAGGCAGTGGAGACGCCC 62.459 72.222 0.00 0.00 43.65 6.13
1212 1222 4.803426 GCAGTGGAGACGCCCGAG 62.803 72.222 0.00 0.00 43.65 4.63
1213 1223 4.135153 CAGTGGAGACGCCCGAGG 62.135 72.222 0.00 0.00 43.65 4.63
1214 1224 4.361971 AGTGGAGACGCCCGAGGA 62.362 66.667 0.00 0.00 43.65 3.71
1215 1225 3.379445 GTGGAGACGCCCGAGGAA 61.379 66.667 0.00 0.00 34.97 3.36
1216 1226 3.068691 TGGAGACGCCCGAGGAAG 61.069 66.667 0.00 0.00 34.97 3.46
1217 1227 4.516195 GGAGACGCCCGAGGAAGC 62.516 72.222 0.00 0.00 0.00 3.86
1344 1354 4.796495 CCCTCCTTTTCCGGCGGG 62.796 72.222 27.98 9.72 42.38 6.13
1587 1600 1.135915 CTGCTCAAGCTGGACTACGAT 59.864 52.381 3.32 0.00 42.66 3.73
1753 1766 1.452145 CCTGACACGGGGGTTTGTTG 61.452 60.000 0.00 0.00 0.00 3.33
1754 1767 0.750182 CTGACACGGGGGTTTGTTGT 60.750 55.000 0.00 0.00 0.00 3.32
1952 1965 3.360758 CGCTTGAAGGTAATTTTTCGCAC 59.639 43.478 0.00 0.00 0.00 5.34
1992 2005 4.385825 TGAACTTGTCGCAGTTTCCTTAT 58.614 39.130 0.00 0.00 37.11 1.73
1993 2006 4.451096 TGAACTTGTCGCAGTTTCCTTATC 59.549 41.667 0.00 0.00 37.11 1.75
2017 2030 3.452264 TGGCTGTGATCTACTAGCAATGT 59.548 43.478 11.26 0.00 36.08 2.71
2019 2032 3.247173 GCTGTGATCTACTAGCAATGTGC 59.753 47.826 0.00 0.00 45.46 4.57
2021 2034 3.452264 TGTGATCTACTAGCAATGTGCCT 59.548 43.478 0.00 0.00 46.52 4.75
2058 2071 7.692460 TCAGTAATGATCTCAACTGCAAAAT 57.308 32.000 13.68 0.00 35.66 1.82
2108 2121 7.598278 AGAGCATGTTTAGATTCTATACCTCG 58.402 38.462 10.56 2.69 0.00 4.63
2130 2143 3.374058 GGGGAATCTGTGTGTAAATCGTG 59.626 47.826 0.00 0.00 0.00 4.35
2175 2195 3.495193 CCAGCGACAATTGAATGAACTG 58.505 45.455 13.59 9.91 0.00 3.16
2180 4043 5.181811 AGCGACAATTGAATGAACTGATCAA 59.818 36.000 13.59 0.00 42.54 2.57
2208 4071 1.483827 TGAAGCTCTCCACATGGCTAG 59.516 52.381 0.00 0.00 34.40 3.42
2267 4132 8.191446 TGACCTTTTTCATTTGACGATTACAAA 58.809 29.630 0.00 0.00 40.62 2.83
2320 4187 3.316308 GGAAATGAATACTGCGCCTCAAT 59.684 43.478 4.18 0.00 0.00 2.57
2339 4206 7.254727 GCCTCAATTATCTTTCTGCTCTTGTAG 60.255 40.741 0.00 0.00 0.00 2.74
2340 4207 7.768120 CCTCAATTATCTTTCTGCTCTTGTAGT 59.232 37.037 0.00 0.00 0.00 2.73
2341 4208 9.809096 CTCAATTATCTTTCTGCTCTTGTAGTA 57.191 33.333 0.00 0.00 0.00 1.82
2354 4221 7.676947 TGCTCTTGTAGTACTTAATTTCTGGT 58.323 34.615 0.00 0.00 0.00 4.00
2391 4258 4.792068 ACATATACACCCCATGGTTCTTG 58.208 43.478 11.73 4.36 44.75 3.02
2414 4282 2.560504 TGCGCATTCGATATCTTTGGT 58.439 42.857 5.66 0.00 38.10 3.67
2441 4309 4.507021 CAGACTAGTAATGCAGCACATGAG 59.493 45.833 0.00 0.00 39.60 2.90
2447 4321 2.414994 ATGCAGCACATGAGCTAGTT 57.585 45.000 17.58 2.47 44.54 2.24
2462 4336 9.817809 CATGAGCTAGTTAGTTACTCCATTTTA 57.182 33.333 0.00 0.00 38.33 1.52
2488 4362 6.940831 TCATCAATCTTGTTCTGACAAACA 57.059 33.333 0.00 0.80 44.65 2.83
2509 4384 4.273480 ACAGTGTGCATCTTGTTTACTGAC 59.727 41.667 0.00 0.00 37.91 3.51
2548 4423 0.661020 AGGAAAACGAAGGTGTTGCG 59.339 50.000 0.00 0.00 36.86 4.85
2615 4490 2.483014 TCCGGTTACAAGAATGGGTG 57.517 50.000 0.00 0.00 0.00 4.61
2619 4494 2.682856 CGGTTACAAGAATGGGTGATGG 59.317 50.000 0.00 0.00 0.00 3.51
2673 4548 1.203187 TCAGGTTAGTCTCCAGGCTGT 60.203 52.381 14.43 0.00 0.00 4.40
2680 4557 1.195115 GTCTCCAGGCTGTCATACCA 58.805 55.000 14.43 0.00 0.00 3.25
2686 4563 1.468520 CAGGCTGTCATACCAAAACCG 59.531 52.381 6.28 0.00 0.00 4.44
2700 4587 3.443681 CCAAAACCGGATTTGTATCTGCT 59.556 43.478 28.75 0.00 38.37 4.24
2707 4594 3.065371 CGGATTTGTATCTGCTGTTTCCC 59.935 47.826 0.00 0.00 30.72 3.97
2734 4621 4.233408 GCAAGCTCCGTTTGCAAG 57.767 55.556 9.96 0.00 46.26 4.01
2735 4622 2.018324 GCAAGCTCCGTTTGCAAGC 61.018 57.895 9.96 2.75 46.26 4.01
2736 4623 2.412037 GCAAGCTCCGTTTGCAAGCT 62.412 55.000 11.70 7.88 46.26 3.74
2737 4624 0.386478 CAAGCTCCGTTTGCAAGCTC 60.386 55.000 10.16 0.00 45.33 4.09
2738 4625 0.536006 AAGCTCCGTTTGCAAGCTCT 60.536 50.000 10.16 0.27 45.33 4.09
2739 4626 1.208614 GCTCCGTTTGCAAGCTCTG 59.791 57.895 11.70 2.37 33.23 3.35
2740 4627 1.510480 GCTCCGTTTGCAAGCTCTGT 61.510 55.000 11.70 0.00 33.23 3.41
2741 4628 0.236711 CTCCGTTTGCAAGCTCTGTG 59.763 55.000 11.70 0.00 0.00 3.66
2742 4629 0.463654 TCCGTTTGCAAGCTCTGTGT 60.464 50.000 11.70 0.00 0.00 3.72
2867 4754 1.346068 GAGGTGAAGGTTCTGCAGTCT 59.654 52.381 14.67 7.35 0.00 3.24
2869 4756 1.423395 GTGAAGGTTCTGCAGTCTCG 58.577 55.000 14.67 0.00 0.00 4.04
2913 4800 5.165676 TGATCAGCTGCAATTTGTCAAATC 58.834 37.500 9.47 2.76 0.00 2.17
2914 4801 4.859304 TCAGCTGCAATTTGTCAAATCT 57.141 36.364 9.47 1.45 0.00 2.40
2915 4802 5.963176 TCAGCTGCAATTTGTCAAATCTA 57.037 34.783 9.47 1.07 0.00 1.98
2917 4804 7.628769 TCAGCTGCAATTTGTCAAATCTATA 57.371 32.000 9.47 0.00 0.00 1.31
2918 4805 8.054152 TCAGCTGCAATTTGTCAAATCTATAA 57.946 30.769 9.47 0.00 0.00 0.98
2919 4806 8.689061 TCAGCTGCAATTTGTCAAATCTATAAT 58.311 29.630 9.47 0.00 0.00 1.28
2920 4807 9.955208 CAGCTGCAATTTGTCAAATCTATAATA 57.045 29.630 11.19 0.00 0.00 0.98
2921 4808 9.956720 AGCTGCAATTTGTCAAATCTATAATAC 57.043 29.630 11.19 0.00 0.00 1.89
2922 4809 9.734620 GCTGCAATTTGTCAAATCTATAATACA 57.265 29.630 11.19 0.00 0.00 2.29
2945 4832 8.102484 ACATAAATAGTTGATCCCCACTAAGT 57.898 34.615 0.00 0.00 0.00 2.24
2946 4833 8.211629 ACATAAATAGTTGATCCCCACTAAGTC 58.788 37.037 0.00 0.00 0.00 3.01
2947 4834 6.893020 AAATAGTTGATCCCCACTAAGTCT 57.107 37.500 0.00 0.00 0.00 3.24
2948 4835 7.989947 AAATAGTTGATCCCCACTAAGTCTA 57.010 36.000 0.00 0.00 0.00 2.59
2949 4836 7.989947 AATAGTTGATCCCCACTAAGTCTAA 57.010 36.000 0.00 0.00 0.00 2.10
2950 4837 8.568617 AATAGTTGATCCCCACTAAGTCTAAT 57.431 34.615 0.00 0.00 0.00 1.73
2951 4838 6.893020 AGTTGATCCCCACTAAGTCTAATT 57.107 37.500 0.00 0.00 0.00 1.40
2952 4839 6.890293 AGTTGATCCCCACTAAGTCTAATTC 58.110 40.000 0.00 0.00 0.00 2.17
2953 4840 6.674419 AGTTGATCCCCACTAAGTCTAATTCT 59.326 38.462 0.00 0.00 0.00 2.40
2954 4841 6.732896 TGATCCCCACTAAGTCTAATTCTC 57.267 41.667 0.00 0.00 0.00 2.87
2955 4842 6.444704 TGATCCCCACTAAGTCTAATTCTCT 58.555 40.000 0.00 0.00 0.00 3.10
2956 4843 6.903534 TGATCCCCACTAAGTCTAATTCTCTT 59.096 38.462 0.00 0.00 0.00 2.85
2957 4844 8.065627 TGATCCCCACTAAGTCTAATTCTCTTA 58.934 37.037 0.00 0.00 0.00 2.10
2958 4845 8.855804 ATCCCCACTAAGTCTAATTCTCTTAA 57.144 34.615 0.00 0.00 0.00 1.85
2959 4846 8.075761 TCCCCACTAAGTCTAATTCTCTTAAC 57.924 38.462 0.00 0.00 0.00 2.01
2960 4847 7.676893 TCCCCACTAAGTCTAATTCTCTTAACA 59.323 37.037 0.00 0.00 0.00 2.41
2961 4848 8.487028 CCCCACTAAGTCTAATTCTCTTAACAT 58.513 37.037 0.00 0.00 0.00 2.71
2962 4849 9.319143 CCCACTAAGTCTAATTCTCTTAACATG 57.681 37.037 0.00 0.00 0.00 3.21
2963 4850 8.821894 CCACTAAGTCTAATTCTCTTAACATGC 58.178 37.037 0.00 0.00 0.00 4.06
2964 4851 9.371136 CACTAAGTCTAATTCTCTTAACATGCA 57.629 33.333 0.00 0.00 0.00 3.96
2965 4852 9.593134 ACTAAGTCTAATTCTCTTAACATGCAG 57.407 33.333 0.00 0.00 0.00 4.41
2966 4853 6.917217 AGTCTAATTCTCTTAACATGCAGC 57.083 37.500 0.00 0.00 0.00 5.25
2967 4854 5.819901 AGTCTAATTCTCTTAACATGCAGCC 59.180 40.000 0.00 0.00 0.00 4.85
2968 4855 5.008118 GTCTAATTCTCTTAACATGCAGCCC 59.992 44.000 0.00 0.00 0.00 5.19
2969 4856 3.659183 ATTCTCTTAACATGCAGCCCT 57.341 42.857 0.00 0.00 0.00 5.19
2970 4857 3.439857 TTCTCTTAACATGCAGCCCTT 57.560 42.857 0.00 0.00 0.00 3.95
2971 4858 2.991250 TCTCTTAACATGCAGCCCTTC 58.009 47.619 0.00 0.00 0.00 3.46
2972 4859 2.305635 TCTCTTAACATGCAGCCCTTCA 59.694 45.455 0.00 0.00 0.00 3.02
2973 4860 2.421424 CTCTTAACATGCAGCCCTTCAC 59.579 50.000 0.00 0.00 0.00 3.18
2974 4861 2.161855 CTTAACATGCAGCCCTTCACA 58.838 47.619 0.00 0.00 0.00 3.58
2975 4862 2.512692 TAACATGCAGCCCTTCACAT 57.487 45.000 0.00 0.00 0.00 3.21
2976 4863 1.180029 AACATGCAGCCCTTCACATC 58.820 50.000 0.00 0.00 0.00 3.06
2977 4864 0.038599 ACATGCAGCCCTTCACATCA 59.961 50.000 0.00 0.00 0.00 3.07
2978 4865 0.454600 CATGCAGCCCTTCACATCAC 59.545 55.000 0.00 0.00 0.00 3.06
2979 4866 0.682209 ATGCAGCCCTTCACATCACC 60.682 55.000 0.00 0.00 0.00 4.02
2980 4867 1.303561 GCAGCCCTTCACATCACCA 60.304 57.895 0.00 0.00 0.00 4.17
2981 4868 0.895100 GCAGCCCTTCACATCACCAA 60.895 55.000 0.00 0.00 0.00 3.67
2982 4869 1.619654 CAGCCCTTCACATCACCAAA 58.380 50.000 0.00 0.00 0.00 3.28
2983 4870 2.173519 CAGCCCTTCACATCACCAAAT 58.826 47.619 0.00 0.00 0.00 2.32
2984 4871 2.094390 CAGCCCTTCACATCACCAAATG 60.094 50.000 0.00 0.00 0.00 2.32
2985 4872 1.895131 GCCCTTCACATCACCAAATGT 59.105 47.619 0.00 0.00 40.49 2.71
2992 4879 2.250031 ACATCACCAAATGTGCCATGT 58.750 42.857 0.00 0.00 45.03 3.21
2993 4880 2.231964 ACATCACCAAATGTGCCATGTC 59.768 45.455 0.00 0.00 45.03 3.06
2994 4881 1.992538 TCACCAAATGTGCCATGTCA 58.007 45.000 0.00 0.00 45.03 3.58
2995 4882 2.527497 TCACCAAATGTGCCATGTCAT 58.473 42.857 0.00 0.00 45.03 3.06
2996 4883 2.492881 TCACCAAATGTGCCATGTCATC 59.507 45.455 0.00 0.00 45.03 2.92
2997 4884 2.231721 CACCAAATGTGCCATGTCATCA 59.768 45.455 0.00 0.00 38.34 3.07
2998 4885 3.101437 ACCAAATGTGCCATGTCATCAT 58.899 40.909 0.00 0.00 34.21 2.45
2999 4886 3.131577 ACCAAATGTGCCATGTCATCATC 59.868 43.478 0.00 0.00 31.15 2.92
3000 4887 3.491964 CCAAATGTGCCATGTCATCATCC 60.492 47.826 0.00 0.00 31.15 3.51
3001 4888 2.740506 ATGTGCCATGTCATCATCCA 57.259 45.000 0.00 0.00 31.15 3.41
3002 4889 1.753930 TGTGCCATGTCATCATCCAC 58.246 50.000 0.00 0.00 35.61 4.02
3003 4890 1.282738 TGTGCCATGTCATCATCCACT 59.717 47.619 0.00 0.00 35.84 4.00
3004 4891 2.504996 TGTGCCATGTCATCATCCACTA 59.495 45.455 0.00 0.00 35.84 2.74
3005 4892 3.136763 GTGCCATGTCATCATCCACTAG 58.863 50.000 0.00 0.00 33.91 2.57
3006 4893 3.040477 TGCCATGTCATCATCCACTAGA 58.960 45.455 0.00 0.00 31.15 2.43
3007 4894 3.455543 TGCCATGTCATCATCCACTAGAA 59.544 43.478 0.00 0.00 31.15 2.10
3008 4895 3.812053 GCCATGTCATCATCCACTAGAAC 59.188 47.826 0.00 0.00 31.15 3.01
3009 4896 4.444022 GCCATGTCATCATCCACTAGAACT 60.444 45.833 0.00 0.00 31.15 3.01
3010 4897 5.221521 GCCATGTCATCATCCACTAGAACTA 60.222 44.000 0.00 0.00 31.15 2.24
3011 4898 6.519721 GCCATGTCATCATCCACTAGAACTAT 60.520 42.308 0.00 0.00 31.15 2.12
3012 4899 7.448420 CCATGTCATCATCCACTAGAACTATT 58.552 38.462 0.00 0.00 31.15 1.73
3013 4900 7.935755 CCATGTCATCATCCACTAGAACTATTT 59.064 37.037 0.00 0.00 31.15 1.40
3014 4901 9.334947 CATGTCATCATCCACTAGAACTATTTT 57.665 33.333 0.00 0.00 31.15 1.82
3015 4902 8.722480 TGTCATCATCCACTAGAACTATTTTG 57.278 34.615 0.00 0.00 0.00 2.44
3016 4903 8.321353 TGTCATCATCCACTAGAACTATTTTGT 58.679 33.333 0.00 0.00 0.00 2.83
3017 4904 9.817809 GTCATCATCCACTAGAACTATTTTGTA 57.182 33.333 0.00 0.00 0.00 2.41
3019 4906 8.768955 CATCATCCACTAGAACTATTTTGTAGC 58.231 37.037 0.00 0.00 0.00 3.58
3020 4907 7.847096 TCATCCACTAGAACTATTTTGTAGCA 58.153 34.615 0.00 0.00 0.00 3.49
3021 4908 7.764443 TCATCCACTAGAACTATTTTGTAGCAC 59.236 37.037 0.00 0.00 0.00 4.40
3022 4909 6.999950 TCCACTAGAACTATTTTGTAGCACA 58.000 36.000 0.00 0.00 0.00 4.57
3023 4910 7.620880 TCCACTAGAACTATTTTGTAGCACAT 58.379 34.615 0.00 0.00 0.00 3.21
3024 4911 7.549134 TCCACTAGAACTATTTTGTAGCACATG 59.451 37.037 0.00 0.00 0.00 3.21
3025 4912 7.182761 CACTAGAACTATTTTGTAGCACATGC 58.817 38.462 0.00 0.00 42.49 4.06
3026 4913 6.878923 ACTAGAACTATTTTGTAGCACATGCA 59.121 34.615 6.64 0.00 45.16 3.96
3027 4914 6.764308 AGAACTATTTTGTAGCACATGCAT 57.236 33.333 6.64 0.00 45.16 3.96
3028 4915 7.864108 AGAACTATTTTGTAGCACATGCATA 57.136 32.000 6.64 0.00 45.16 3.14
3029 4916 8.279970 AGAACTATTTTGTAGCACATGCATAA 57.720 30.769 6.64 0.00 45.16 1.90
3030 4917 8.184192 AGAACTATTTTGTAGCACATGCATAAC 58.816 33.333 6.64 2.17 45.16 1.89
3031 4918 6.795399 ACTATTTTGTAGCACATGCATAACC 58.205 36.000 6.64 0.00 45.16 2.85
3032 4919 4.448537 TTTTGTAGCACATGCATAACCC 57.551 40.909 6.64 0.00 45.16 4.11
3033 4920 2.797177 TGTAGCACATGCATAACCCA 57.203 45.000 6.64 0.00 45.16 4.51
3034 4921 3.078891 TGTAGCACATGCATAACCCAA 57.921 42.857 6.64 0.00 45.16 4.12
3035 4922 3.630168 TGTAGCACATGCATAACCCAAT 58.370 40.909 6.64 0.00 45.16 3.16
3036 4923 4.022603 TGTAGCACATGCATAACCCAATT 58.977 39.130 6.64 0.00 45.16 2.32
3037 4924 4.465660 TGTAGCACATGCATAACCCAATTT 59.534 37.500 6.64 0.00 45.16 1.82
3038 4925 5.654209 TGTAGCACATGCATAACCCAATTTA 59.346 36.000 6.64 0.00 45.16 1.40
3039 4926 5.674052 AGCACATGCATAACCCAATTTAA 57.326 34.783 6.64 0.00 45.16 1.52
3040 4927 6.237887 AGCACATGCATAACCCAATTTAAT 57.762 33.333 6.64 0.00 45.16 1.40
3041 4928 6.652053 AGCACATGCATAACCCAATTTAATT 58.348 32.000 6.64 0.00 45.16 1.40
3042 4929 7.790027 AGCACATGCATAACCCAATTTAATTA 58.210 30.769 6.64 0.00 45.16 1.40
3043 4930 8.431222 AGCACATGCATAACCCAATTTAATTAT 58.569 29.630 6.64 0.00 45.16 1.28
3044 4931 9.054922 GCACATGCATAACCCAATTTAATTATT 57.945 29.630 0.00 0.00 41.59 1.40
3046 4933 9.777297 ACATGCATAACCCAATTTAATTATTCC 57.223 29.630 0.00 0.00 0.00 3.01
3047 4934 9.775854 CATGCATAACCCAATTTAATTATTCCA 57.224 29.630 0.00 0.00 0.00 3.53
3049 4936 9.995003 TGCATAACCCAATTTAATTATTCCATC 57.005 29.630 0.00 0.00 0.00 3.51
3053 4940 8.852671 AACCCAATTTAATTATTCCATCTCCA 57.147 30.769 0.00 0.00 0.00 3.86
3054 4941 8.852671 ACCCAATTTAATTATTCCATCTCCAA 57.147 30.769 0.00 0.00 0.00 3.53
3055 4942 9.451206 ACCCAATTTAATTATTCCATCTCCAAT 57.549 29.630 0.00 0.00 0.00 3.16
3063 4950 8.697507 AATTATTCCATCTCCAATAGTCCAAC 57.302 34.615 0.00 0.00 0.00 3.77
3064 4951 3.819564 TCCATCTCCAATAGTCCAACG 57.180 47.619 0.00 0.00 0.00 4.10
3065 4952 3.104512 TCCATCTCCAATAGTCCAACGT 58.895 45.455 0.00 0.00 0.00 3.99
3066 4953 4.283337 TCCATCTCCAATAGTCCAACGTA 58.717 43.478 0.00 0.00 0.00 3.57
3067 4954 4.899457 TCCATCTCCAATAGTCCAACGTAT 59.101 41.667 0.00 0.00 0.00 3.06
3068 4955 6.072649 TCCATCTCCAATAGTCCAACGTATA 58.927 40.000 0.00 0.00 0.00 1.47
3069 4956 6.724441 TCCATCTCCAATAGTCCAACGTATAT 59.276 38.462 0.00 0.00 0.00 0.86
3070 4957 6.813649 CCATCTCCAATAGTCCAACGTATATG 59.186 42.308 0.00 0.00 0.00 1.78
3071 4958 5.779922 TCTCCAATAGTCCAACGTATATGC 58.220 41.667 0.00 0.00 0.00 3.14
3072 4959 5.303333 TCTCCAATAGTCCAACGTATATGCA 59.697 40.000 0.00 0.00 0.00 3.96
3073 4960 6.014584 TCTCCAATAGTCCAACGTATATGCAT 60.015 38.462 3.79 3.79 0.00 3.96
3074 4961 5.931724 TCCAATAGTCCAACGTATATGCATG 59.068 40.000 10.16 0.00 0.00 4.06
3075 4962 5.700832 CCAATAGTCCAACGTATATGCATGT 59.299 40.000 10.16 5.06 0.00 3.21
3076 4963 6.204688 CCAATAGTCCAACGTATATGCATGTT 59.795 38.462 10.16 1.44 0.00 2.71
3077 4964 7.255104 CCAATAGTCCAACGTATATGCATGTTT 60.255 37.037 10.16 0.00 0.00 2.83
3078 4965 7.801716 ATAGTCCAACGTATATGCATGTTTT 57.198 32.000 10.16 0.00 0.00 2.43
3079 4966 6.509418 AGTCCAACGTATATGCATGTTTTT 57.491 33.333 10.16 0.00 0.00 1.94
3102 4989 8.610248 TTTTGTTCACATAGAATTACTTCCGA 57.390 30.769 0.00 0.00 38.76 4.55
3103 4990 8.610248 TTTGTTCACATAGAATTACTTCCGAA 57.390 30.769 0.00 0.00 38.76 4.30
3104 4991 8.610248 TTGTTCACATAGAATTACTTCCGAAA 57.390 30.769 0.00 0.00 38.76 3.46
3105 4992 8.610248 TGTTCACATAGAATTACTTCCGAAAA 57.390 30.769 0.00 0.00 38.76 2.29
3106 4993 9.226606 TGTTCACATAGAATTACTTCCGAAAAT 57.773 29.630 0.00 0.00 38.76 1.82
3132 5019 8.948631 AATAGCTTTCGACTTAGATCATTTCA 57.051 30.769 0.00 0.00 0.00 2.69
3133 5020 9.553064 AATAGCTTTCGACTTAGATCATTTCAT 57.447 29.630 0.00 0.00 0.00 2.57
3134 5021 7.244166 AGCTTTCGACTTAGATCATTTCATG 57.756 36.000 0.00 0.00 0.00 3.07
3135 5022 5.906285 GCTTTCGACTTAGATCATTTCATGC 59.094 40.000 0.00 0.00 0.00 4.06
3136 5023 6.457392 GCTTTCGACTTAGATCATTTCATGCA 60.457 38.462 0.00 0.00 0.00 3.96
3137 5024 7.558161 TTTCGACTTAGATCATTTCATGCAT 57.442 32.000 0.00 0.00 0.00 3.96
3138 5025 8.661352 TTTCGACTTAGATCATTTCATGCATA 57.339 30.769 0.00 0.00 0.00 3.14
3139 5026 8.837788 TTCGACTTAGATCATTTCATGCATAT 57.162 30.769 0.00 0.00 0.00 1.78
3140 5027 9.927668 TTCGACTTAGATCATTTCATGCATATA 57.072 29.630 0.00 0.00 0.00 0.86
3141 5028 9.578439 TCGACTTAGATCATTTCATGCATATAG 57.422 33.333 0.00 0.00 0.00 1.31
3142 5029 9.578439 CGACTTAGATCATTTCATGCATATAGA 57.422 33.333 0.00 0.00 0.00 1.98
3176 5063 9.060547 CAAAATTAATTTTTAAAATCCCGCAGC 57.939 29.630 20.92 0.00 37.86 5.25
3177 5064 7.913674 AATTAATTTTTAAAATCCCGCAGCA 57.086 28.000 3.23 0.00 0.00 4.41
3178 5065 7.913674 ATTAATTTTTAAAATCCCGCAGCAA 57.086 28.000 3.23 0.00 0.00 3.91
3179 5066 5.605564 AATTTTTAAAATCCCGCAGCAAC 57.394 34.783 3.23 0.00 0.00 4.17
3180 5067 2.339728 TTTAAAATCCCGCAGCAACG 57.660 45.000 0.00 0.00 0.00 4.10
3181 5068 1.240256 TTAAAATCCCGCAGCAACGT 58.760 45.000 0.00 0.00 0.00 3.99
3182 5069 0.519519 TAAAATCCCGCAGCAACGTG 59.480 50.000 0.00 0.00 0.00 4.49
3183 5070 2.747507 AAAATCCCGCAGCAACGTGC 62.748 55.000 0.00 0.00 45.46 5.34
3192 5079 3.723348 GCAACGTGCGGGGAAGTC 61.723 66.667 0.00 0.00 31.71 3.01
3193 5080 2.280524 CAACGTGCGGGGAAGTCA 60.281 61.111 0.00 0.00 0.00 3.41
3194 5081 2.280592 AACGTGCGGGGAAGTCAC 60.281 61.111 0.00 0.00 0.00 3.67
3195 5082 3.819877 AACGTGCGGGGAAGTCACC 62.820 63.158 0.00 0.00 35.61 4.02
3196 5083 4.003788 CGTGCGGGGAAGTCACCT 62.004 66.667 0.00 0.00 37.25 4.00
3197 5084 2.642254 CGTGCGGGGAAGTCACCTA 61.642 63.158 0.00 0.00 37.25 3.08
3198 5085 1.218316 GTGCGGGGAAGTCACCTAG 59.782 63.158 0.00 0.00 37.25 3.02
3199 5086 1.229082 TGCGGGGAAGTCACCTAGT 60.229 57.895 0.00 0.00 37.25 2.57
3200 5087 0.834687 TGCGGGGAAGTCACCTAGTT 60.835 55.000 0.00 0.00 37.25 2.24
3201 5088 1.188863 GCGGGGAAGTCACCTAGTTA 58.811 55.000 0.00 0.00 37.25 2.24
3205 5092 3.368116 CGGGGAAGTCACCTAGTTAGTTG 60.368 52.174 0.00 0.00 37.25 3.16
3351 5256 2.157738 CTCAGGCCAAGAGTTTTCTGG 58.842 52.381 15.12 0.00 32.79 3.86
3379 5284 4.935352 TGGGTGAAAAAGAGATTTGGTG 57.065 40.909 0.00 0.00 0.00 4.17
3406 5311 2.037902 TGCCGTCCTGTATTTCTGTTCA 59.962 45.455 0.00 0.00 0.00 3.18
3411 5316 5.171476 CGTCCTGTATTTCTGTTCAGTCAT 58.829 41.667 0.00 0.00 0.00 3.06
3412 5317 5.289675 CGTCCTGTATTTCTGTTCAGTCATC 59.710 44.000 0.00 0.00 0.00 2.92
3479 5429 0.758734 TCCACCTGTCAGTGACTTGG 59.241 55.000 23.29 23.97 40.34 3.61
3511 5461 2.278332 AGCTGTTCCCTTGTTCCTTC 57.722 50.000 0.00 0.00 0.00 3.46
3534 5484 1.878102 CGTGGCAGATATACTTGGGCC 60.878 57.143 0.00 0.00 41.70 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 34 2.654749 TTACCATGTCTGCTCGTCTG 57.345 50.000 0.00 0.00 0.00 3.51
49 51 4.202264 ACATTTGACGGTTTTGCCCAATTA 60.202 37.500 0.00 0.00 0.00 1.40
63 65 4.122776 AGCTAGCCAATAGACATTTGACG 58.877 43.478 12.13 0.00 32.76 4.35
64 66 7.553881 TTAAGCTAGCCAATAGACATTTGAC 57.446 36.000 12.13 0.00 32.76 3.18
68 70 6.821665 TCGTTTTAAGCTAGCCAATAGACATT 59.178 34.615 12.13 0.00 32.76 2.71
89 91 1.045407 TGGCACTCTTACCTGTCGTT 58.955 50.000 0.00 0.00 0.00 3.85
96 98 1.009829 CGCTTCATGGCACTCTTACC 58.990 55.000 0.00 0.00 0.00 2.85
98 100 3.457234 CATACGCTTCATGGCACTCTTA 58.543 45.455 0.00 0.00 0.00 2.10
118 120 5.452077 GCCCGGTTACAATATTTATTTGGCA 60.452 40.000 0.00 0.00 0.00 4.92
133 135 2.074576 GAAACTCTCTTGCCCGGTTAC 58.925 52.381 0.00 0.00 0.00 2.50
163 171 4.035112 ACCACGATTAATCCTACTTGGGA 58.965 43.478 9.87 0.00 39.95 4.37
180 188 3.557054 CCAATAGGATGGGATGTACCACG 60.557 52.174 0.00 0.00 44.72 4.94
188 196 3.010584 GCCACATACCAATAGGATGGGAT 59.989 47.826 0.00 0.00 45.34 3.85
197 205 6.040955 TGAAAACAAGTTGCCACATACCAATA 59.959 34.615 1.81 0.00 0.00 1.90
208 216 7.223387 GGATCATCAATATGAAAACAAGTTGCC 59.777 37.037 1.81 0.00 45.12 4.52
220 228 6.203526 TGTGGAATGGGATCATCAATATGA 57.796 37.500 0.00 0.00 46.01 2.15
296 304 8.610035 CGCAACATGATATGCTAGATTTCATAT 58.390 33.333 16.55 0.00 40.39 1.78
297 305 7.818930 TCGCAACATGATATGCTAGATTTCATA 59.181 33.333 16.55 0.00 40.39 2.15
298 306 6.652062 TCGCAACATGATATGCTAGATTTCAT 59.348 34.615 16.55 0.00 40.39 2.57
299 307 5.990996 TCGCAACATGATATGCTAGATTTCA 59.009 36.000 16.55 0.00 40.39 2.69
338 346 7.809546 TGGTCTATAGATGTTCAGTGAGTAG 57.190 40.000 5.57 0.00 0.00 2.57
369 377 5.310409 AGGATGAAGACCTTCTCAAACAA 57.690 39.130 10.67 0.00 40.14 2.83
373 381 6.433847 TGTTTAGGATGAAGACCTTCTCAA 57.566 37.500 10.67 0.00 40.14 3.02
391 399 5.821470 TGGTTGACCGTGTTCTTAATGTTTA 59.179 36.000 0.00 0.00 39.43 2.01
395 403 4.822036 TTGGTTGACCGTGTTCTTAATG 57.178 40.909 0.00 0.00 39.43 1.90
406 414 1.737793 GGTAGCAGATTTGGTTGACCG 59.262 52.381 0.00 0.00 39.43 4.79
413 421 5.368145 TGCTATGTAAGGTAGCAGATTTGG 58.632 41.667 3.89 0.00 46.92 3.28
430 438 5.843673 TCTAAGAGAGGTCAGTTGCTATG 57.156 43.478 0.00 0.00 0.00 2.23
458 466 8.858003 TTCAAGTTGTGCAAATCGTAAAATAA 57.142 26.923 2.11 0.00 0.00 1.40
459 467 8.858003 TTTCAAGTTGTGCAAATCGTAAAATA 57.142 26.923 2.11 0.00 0.00 1.40
468 476 5.879223 TGTTTGGATTTCAAGTTGTGCAAAT 59.121 32.000 12.54 7.54 35.06 2.32
511 519 3.701542 TGGCGAGTAGAGAATTGTCAGAT 59.298 43.478 5.28 0.00 0.00 2.90
518 526 4.631813 GTCACATTTGGCGAGTAGAGAATT 59.368 41.667 0.00 0.00 0.00 2.17
523 531 3.394674 TTGTCACATTTGGCGAGTAGA 57.605 42.857 0.00 0.00 0.00 2.59
525 533 5.446143 AATTTTGTCACATTTGGCGAGTA 57.554 34.783 0.00 0.00 0.00 2.59
527 535 4.744137 TGAAATTTTGTCACATTTGGCGAG 59.256 37.500 0.00 0.00 0.00 5.03
542 550 4.277423 CGGGTGTGAGTACCTTGAAATTTT 59.723 41.667 0.00 0.00 40.66 1.82
544 552 3.181448 ACGGGTGTGAGTACCTTGAAATT 60.181 43.478 0.00 0.00 40.66 1.82
604 612 9.593134 CTTAAGCTAAGCTTCTTCTTGATCTTA 57.407 33.333 0.00 0.00 46.77 2.10
605 613 8.317679 TCTTAAGCTAAGCTTCTTCTTGATCTT 58.682 33.333 0.00 0.00 46.77 2.40
606 614 7.846066 TCTTAAGCTAAGCTTCTTCTTGATCT 58.154 34.615 0.00 0.00 46.77 2.75
607 615 8.550376 CATCTTAAGCTAAGCTTCTTCTTGATC 58.450 37.037 0.00 0.00 46.77 2.92
608 616 8.263640 TCATCTTAAGCTAAGCTTCTTCTTGAT 58.736 33.333 0.00 3.79 46.77 2.57
609 617 7.615403 TCATCTTAAGCTAAGCTTCTTCTTGA 58.385 34.615 0.00 1.15 46.77 3.02
610 618 7.840342 TCATCTTAAGCTAAGCTTCTTCTTG 57.160 36.000 0.00 0.00 46.77 3.02
611 619 8.854614 TTTCATCTTAAGCTAAGCTTCTTCTT 57.145 30.769 0.00 7.58 46.77 2.52
633 641 7.468922 ACTTTAACACCAGTACTACGTTTTC 57.531 36.000 0.00 0.00 0.00 2.29
636 644 5.215160 CGACTTTAACACCAGTACTACGTT 58.785 41.667 0.00 2.05 0.00 3.99
688 697 2.561037 GGGGGTTTTGTGCCGTGAG 61.561 63.158 0.00 0.00 0.00 3.51
690 699 3.972276 CGGGGGTTTTGTGCCGTG 61.972 66.667 0.00 0.00 0.00 4.94
691 700 4.509580 ACGGGGGTTTTGTGCCGT 62.510 61.111 0.00 0.00 0.00 5.68
692 701 3.972276 CACGGGGGTTTTGTGCCG 61.972 66.667 0.00 0.00 0.00 5.69
693 702 2.082629 CTTCACGGGGGTTTTGTGCC 62.083 60.000 0.00 0.00 33.69 5.01
694 703 1.362355 CTTCACGGGGGTTTTGTGC 59.638 57.895 0.00 0.00 33.69 4.57
742 751 1.741770 CTTTTCGCTCGGGGTCCTG 60.742 63.158 0.00 0.00 0.00 3.86
755 764 0.733909 GATTGCGGTGCTGCCTTTTC 60.734 55.000 0.00 0.00 34.25 2.29
764 773 3.818787 CTGGCCAGATTGCGGTGC 61.819 66.667 29.88 0.00 0.00 5.01
1128 1138 0.101399 CCTCCACCGACAGAGATTCG 59.899 60.000 0.00 0.00 36.20 3.34
1186 1196 4.154347 CTCCACTGCCTCCTCCGC 62.154 72.222 0.00 0.00 0.00 5.54
1197 1207 3.881019 TTCCTCGGGCGTCTCCACT 62.881 63.158 0.00 0.00 36.21 4.00
1210 1220 3.512516 GTGCCCGCATGCTTCCTC 61.513 66.667 17.13 0.90 0.00 3.71
1213 1223 3.869272 CTCGTGCCCGCATGCTTC 61.869 66.667 17.13 4.96 33.28 3.86
1305 1315 2.711922 GGACACGCCGAGGATGTCT 61.712 63.158 19.55 0.00 42.00 3.41
1587 1600 3.473647 CAGGCGGCCAGGATCTCA 61.474 66.667 23.09 0.00 0.00 3.27
1692 1705 2.329379 CTCCGACTCCGAAAAGACAAG 58.671 52.381 0.00 0.00 38.22 3.16
1700 1713 2.547640 ATCGTCCCTCCGACTCCGAA 62.548 60.000 0.00 0.00 40.08 4.30
1753 1766 0.814010 ACGAACACCTCCTGCAACAC 60.814 55.000 0.00 0.00 0.00 3.32
1754 1767 0.813610 CACGAACACCTCCTGCAACA 60.814 55.000 0.00 0.00 0.00 3.33
1814 1827 3.400054 CCCTTCCGGACACCTCCC 61.400 72.222 1.83 0.00 31.93 4.30
1992 2005 1.676529 GCTAGTAGATCACAGCCACGA 59.323 52.381 0.00 0.00 0.00 4.35
1993 2006 1.405463 TGCTAGTAGATCACAGCCACG 59.595 52.381 0.00 0.00 33.15 4.94
2017 2030 2.501316 ACTGATGCAGTATGTACAGGCA 59.499 45.455 14.12 14.12 43.46 4.75
2019 2032 6.515832 TCATTACTGATGCAGTATGTACAGG 58.484 40.000 7.99 0.00 44.85 4.00
2021 2034 7.955918 AGATCATTACTGATGCAGTATGTACA 58.044 34.615 7.99 0.00 44.85 2.90
2058 2071 1.462616 CCAGATTCCCATCAACGCAA 58.537 50.000 0.00 0.00 0.00 4.85
2108 2121 3.374058 CACGATTTACACACAGATTCCCC 59.626 47.826 0.00 0.00 0.00 4.81
2130 2143 5.289083 ACCAGAAGCTGAATCTCTATTCC 57.711 43.478 0.00 0.00 40.78 3.01
2175 2195 4.391523 GGAGAGCTTCAGTTCTGTTTGATC 59.608 45.833 0.00 0.00 35.71 2.92
2180 4043 2.435805 TGTGGAGAGCTTCAGTTCTGTT 59.564 45.455 0.00 0.00 35.71 3.16
2208 4071 6.551227 ACCATAATTTTGAGGCTATCTTTCCC 59.449 38.462 0.00 0.00 0.00 3.97
2267 4132 4.890158 TGTGTGAGGATGTGTGTATTCT 57.110 40.909 0.00 0.00 0.00 2.40
2339 4206 8.933807 GTCTCCTGTTTACCAGAAATTAAGTAC 58.066 37.037 0.00 0.00 44.49 2.73
2340 4207 8.653191 TGTCTCCTGTTTACCAGAAATTAAGTA 58.347 33.333 0.00 0.00 44.49 2.24
2341 4208 7.514721 TGTCTCCTGTTTACCAGAAATTAAGT 58.485 34.615 0.00 0.00 44.49 2.24
2354 4221 8.426489 GGGTGTATATGTATTGTCTCCTGTTTA 58.574 37.037 0.00 0.00 0.00 2.01
2362 4229 6.126863 CCATGGGGTGTATATGTATTGTCT 57.873 41.667 2.85 0.00 0.00 3.41
2403 4270 5.665459 ACTAGTCTGCACACCAAAGATATC 58.335 41.667 0.00 0.00 0.00 1.63
2414 4282 2.028203 TGCTGCATTACTAGTCTGCACA 60.028 45.455 22.48 20.85 40.75 4.57
2462 4336 8.415553 TGTTTGTCAGAACAAGATTGATGAAAT 58.584 29.630 0.00 0.00 45.72 2.17
2476 4350 3.313526 AGATGCACACTGTTTGTCAGAAC 59.686 43.478 0.00 0.00 46.27 3.01
2486 4360 4.273480 GTCAGTAAACAAGATGCACACTGT 59.727 41.667 0.00 0.00 34.83 3.55
2488 4362 3.815401 GGTCAGTAAACAAGATGCACACT 59.185 43.478 0.00 0.00 0.00 3.55
2509 4384 0.321564 TGATGAAACGACCCTGCAGG 60.322 55.000 26.87 26.87 43.78 4.85
2548 4423 1.218230 GCTCGTCTCAATCGGCCATC 61.218 60.000 2.24 0.00 0.00 3.51
2619 4494 1.065418 ACAGACGGAATGGAATGGGTC 60.065 52.381 0.00 0.00 0.00 4.46
2673 4548 6.317642 CAGATACAAATCCGGTTTTGGTATGA 59.682 38.462 31.44 16.98 40.20 2.15
2680 4557 4.079253 ACAGCAGATACAAATCCGGTTTT 58.921 39.130 0.00 2.22 31.98 2.43
2686 4563 3.065371 CGGGAAACAGCAGATACAAATCC 59.935 47.826 0.00 0.00 31.98 3.01
2700 4587 2.597217 CAGCTTGGCCGGGAAACA 60.597 61.111 2.18 0.00 0.00 2.83
2724 4611 0.317269 CACACAGAGCTTGCAAACGG 60.317 55.000 0.00 0.00 0.00 4.44
2725 4612 0.931662 GCACACAGAGCTTGCAAACG 60.932 55.000 0.00 0.00 36.22 3.60
2728 4615 1.501337 CGAGCACACAGAGCTTGCAA 61.501 55.000 9.84 0.00 43.58 4.08
2730 4617 2.675056 CCGAGCACACAGAGCTTGC 61.675 63.158 0.00 0.00 43.58 4.01
2731 4618 2.675056 GCCGAGCACACAGAGCTTG 61.675 63.158 0.00 0.00 43.58 4.01
2732 4619 2.358003 GCCGAGCACACAGAGCTT 60.358 61.111 0.00 0.00 43.58 3.74
2733 4620 4.731612 CGCCGAGCACACAGAGCT 62.732 66.667 0.00 0.00 46.82 4.09
2867 4754 3.252458 TCTGAAGATCTGAACGTTCACGA 59.748 43.478 26.53 24.61 43.02 4.35
2869 4756 5.164233 TCATCTGAAGATCTGAACGTTCAC 58.836 41.667 26.53 16.99 30.69 3.18
2919 4806 9.220906 ACTTAGTGGGGATCAACTATTTATGTA 57.779 33.333 0.00 0.00 0.00 2.29
2920 4807 8.102484 ACTTAGTGGGGATCAACTATTTATGT 57.898 34.615 0.00 0.00 0.00 2.29
2921 4808 8.432805 AGACTTAGTGGGGATCAACTATTTATG 58.567 37.037 0.00 0.00 0.00 1.90
2922 4809 8.568617 AGACTTAGTGGGGATCAACTATTTAT 57.431 34.615 0.00 0.00 0.00 1.40
2923 4810 7.989947 AGACTTAGTGGGGATCAACTATTTA 57.010 36.000 0.00 0.00 0.00 1.40
2924 4811 6.893020 AGACTTAGTGGGGATCAACTATTT 57.107 37.500 0.00 0.00 0.00 1.40
2925 4812 7.989947 TTAGACTTAGTGGGGATCAACTATT 57.010 36.000 0.00 0.00 0.00 1.73
2926 4813 8.568617 AATTAGACTTAGTGGGGATCAACTAT 57.431 34.615 0.00 0.00 0.00 2.12
2927 4814 7.844779 AGAATTAGACTTAGTGGGGATCAACTA 59.155 37.037 0.00 0.00 0.00 2.24
2928 4815 6.674419 AGAATTAGACTTAGTGGGGATCAACT 59.326 38.462 0.00 0.00 0.00 3.16
2929 4816 6.890293 AGAATTAGACTTAGTGGGGATCAAC 58.110 40.000 0.00 0.00 0.00 3.18
2930 4817 6.903534 AGAGAATTAGACTTAGTGGGGATCAA 59.096 38.462 0.00 0.00 0.00 2.57
2931 4818 6.444704 AGAGAATTAGACTTAGTGGGGATCA 58.555 40.000 0.00 0.00 0.00 2.92
2932 4819 6.987403 AGAGAATTAGACTTAGTGGGGATC 57.013 41.667 0.00 0.00 0.00 3.36
2933 4820 8.706521 GTTAAGAGAATTAGACTTAGTGGGGAT 58.293 37.037 0.00 0.00 0.00 3.85
2934 4821 7.676893 TGTTAAGAGAATTAGACTTAGTGGGGA 59.323 37.037 0.00 0.00 0.00 4.81
2935 4822 7.848128 TGTTAAGAGAATTAGACTTAGTGGGG 58.152 38.462 0.00 0.00 0.00 4.96
2936 4823 9.319143 CATGTTAAGAGAATTAGACTTAGTGGG 57.681 37.037 0.00 0.00 0.00 4.61
2937 4824 8.821894 GCATGTTAAGAGAATTAGACTTAGTGG 58.178 37.037 0.00 0.00 0.00 4.00
2938 4825 9.371136 TGCATGTTAAGAGAATTAGACTTAGTG 57.629 33.333 0.00 0.00 0.00 2.74
2939 4826 9.593134 CTGCATGTTAAGAGAATTAGACTTAGT 57.407 33.333 0.00 0.00 0.00 2.24
2940 4827 8.547069 GCTGCATGTTAAGAGAATTAGACTTAG 58.453 37.037 0.00 0.00 0.00 2.18
2941 4828 7.495934 GGCTGCATGTTAAGAGAATTAGACTTA 59.504 37.037 0.50 0.00 0.00 2.24
2942 4829 6.317391 GGCTGCATGTTAAGAGAATTAGACTT 59.683 38.462 0.50 0.00 0.00 3.01
2943 4830 5.819901 GGCTGCATGTTAAGAGAATTAGACT 59.180 40.000 0.50 0.00 0.00 3.24
2944 4831 5.008118 GGGCTGCATGTTAAGAGAATTAGAC 59.992 44.000 0.50 0.00 0.00 2.59
2945 4832 5.104360 AGGGCTGCATGTTAAGAGAATTAGA 60.104 40.000 0.50 0.00 0.00 2.10
2946 4833 5.128919 AGGGCTGCATGTTAAGAGAATTAG 58.871 41.667 0.50 0.00 0.00 1.73
2947 4834 5.116084 AGGGCTGCATGTTAAGAGAATTA 57.884 39.130 0.50 0.00 0.00 1.40
2948 4835 3.973425 AGGGCTGCATGTTAAGAGAATT 58.027 40.909 0.50 0.00 0.00 2.17
2949 4836 3.659183 AGGGCTGCATGTTAAGAGAAT 57.341 42.857 0.50 0.00 0.00 2.40
2950 4837 3.244875 TGAAGGGCTGCATGTTAAGAGAA 60.245 43.478 0.50 0.00 0.00 2.87
2951 4838 2.305635 TGAAGGGCTGCATGTTAAGAGA 59.694 45.455 0.50 0.00 0.00 3.10
2952 4839 2.421424 GTGAAGGGCTGCATGTTAAGAG 59.579 50.000 0.50 0.00 0.00 2.85
2953 4840 2.224744 TGTGAAGGGCTGCATGTTAAGA 60.225 45.455 0.50 0.00 0.00 2.10
2954 4841 2.161855 TGTGAAGGGCTGCATGTTAAG 58.838 47.619 0.50 0.00 0.00 1.85
2955 4842 2.284754 TGTGAAGGGCTGCATGTTAA 57.715 45.000 0.50 0.00 0.00 2.01
2956 4843 2.290832 TGATGTGAAGGGCTGCATGTTA 60.291 45.455 0.50 0.00 0.00 2.41
2957 4844 1.180029 GATGTGAAGGGCTGCATGTT 58.820 50.000 0.50 0.00 0.00 2.71
2958 4845 0.038599 TGATGTGAAGGGCTGCATGT 59.961 50.000 0.50 0.00 0.00 3.21
2959 4846 0.454600 GTGATGTGAAGGGCTGCATG 59.545 55.000 0.50 0.00 0.00 4.06
2960 4847 0.682209 GGTGATGTGAAGGGCTGCAT 60.682 55.000 0.50 0.00 0.00 3.96
2961 4848 1.303561 GGTGATGTGAAGGGCTGCA 60.304 57.895 0.50 0.00 0.00 4.41
2962 4849 0.895100 TTGGTGATGTGAAGGGCTGC 60.895 55.000 0.00 0.00 0.00 5.25
2963 4850 1.619654 TTTGGTGATGTGAAGGGCTG 58.380 50.000 0.00 0.00 0.00 4.85
2964 4851 2.173519 CATTTGGTGATGTGAAGGGCT 58.826 47.619 0.00 0.00 0.00 5.19
2965 4852 1.895131 ACATTTGGTGATGTGAAGGGC 59.105 47.619 0.00 0.00 38.75 5.19
2984 4871 2.048444 AGTGGATGATGACATGGCAC 57.952 50.000 1.45 0.00 36.82 5.01
2985 4872 3.040477 TCTAGTGGATGATGACATGGCA 58.960 45.455 2.18 2.18 36.82 4.92
2986 4873 3.758755 TCTAGTGGATGATGACATGGC 57.241 47.619 0.00 0.00 36.82 4.40
2987 4874 5.287674 AGTTCTAGTGGATGATGACATGG 57.712 43.478 0.00 0.00 36.82 3.66
2988 4875 8.899427 AAATAGTTCTAGTGGATGATGACATG 57.101 34.615 0.00 0.00 36.82 3.21
2989 4876 9.334947 CAAAATAGTTCTAGTGGATGATGACAT 57.665 33.333 0.00 0.00 39.67 3.06
2990 4877 8.321353 ACAAAATAGTTCTAGTGGATGATGACA 58.679 33.333 0.00 0.00 0.00 3.58
2991 4878 8.723942 ACAAAATAGTTCTAGTGGATGATGAC 57.276 34.615 0.00 0.00 0.00 3.06
2993 4880 8.768955 GCTACAAAATAGTTCTAGTGGATGATG 58.231 37.037 0.00 0.00 0.00 3.07
2994 4881 8.486210 TGCTACAAAATAGTTCTAGTGGATGAT 58.514 33.333 0.00 0.00 0.00 2.45
2995 4882 7.764443 GTGCTACAAAATAGTTCTAGTGGATGA 59.236 37.037 0.00 0.00 0.00 2.92
2996 4883 7.549134 TGTGCTACAAAATAGTTCTAGTGGATG 59.451 37.037 0.00 0.00 0.00 3.51
2997 4884 7.620880 TGTGCTACAAAATAGTTCTAGTGGAT 58.379 34.615 0.00 0.00 0.00 3.41
2998 4885 6.999950 TGTGCTACAAAATAGTTCTAGTGGA 58.000 36.000 0.00 0.00 0.00 4.02
2999 4886 7.677276 GCATGTGCTACAAAATAGTTCTAGTGG 60.677 40.741 0.00 0.00 38.21 4.00
3000 4887 7.148423 TGCATGTGCTACAAAATAGTTCTAGTG 60.148 37.037 6.55 0.00 42.66 2.74
3001 4888 6.878923 TGCATGTGCTACAAAATAGTTCTAGT 59.121 34.615 6.55 0.00 42.66 2.57
3002 4889 7.307493 TGCATGTGCTACAAAATAGTTCTAG 57.693 36.000 6.55 0.00 42.66 2.43
3003 4890 7.864108 ATGCATGTGCTACAAAATAGTTCTA 57.136 32.000 0.00 0.00 42.66 2.10
3004 4891 6.764308 ATGCATGTGCTACAAAATAGTTCT 57.236 33.333 0.00 0.00 42.66 3.01
3005 4892 7.432252 GGTTATGCATGTGCTACAAAATAGTTC 59.568 37.037 10.16 0.00 42.66 3.01
3006 4893 7.257722 GGTTATGCATGTGCTACAAAATAGTT 58.742 34.615 10.16 0.00 42.66 2.24
3007 4894 6.183360 GGGTTATGCATGTGCTACAAAATAGT 60.183 38.462 10.16 0.00 42.66 2.12
3008 4895 6.183360 TGGGTTATGCATGTGCTACAAAATAG 60.183 38.462 10.16 0.00 42.66 1.73
3009 4896 5.654209 TGGGTTATGCATGTGCTACAAAATA 59.346 36.000 10.16 0.00 42.66 1.40
3010 4897 4.465660 TGGGTTATGCATGTGCTACAAAAT 59.534 37.500 10.16 0.00 42.66 1.82
3011 4898 3.829026 TGGGTTATGCATGTGCTACAAAA 59.171 39.130 10.16 0.00 42.66 2.44
3012 4899 3.425659 TGGGTTATGCATGTGCTACAAA 58.574 40.909 10.16 0.00 42.66 2.83
3013 4900 3.078891 TGGGTTATGCATGTGCTACAA 57.921 42.857 10.16 0.00 42.66 2.41
3014 4901 2.797177 TGGGTTATGCATGTGCTACA 57.203 45.000 10.16 0.00 42.66 2.74
3015 4902 4.654091 AATTGGGTTATGCATGTGCTAC 57.346 40.909 10.16 0.00 42.66 3.58
3016 4903 6.782082 TTAAATTGGGTTATGCATGTGCTA 57.218 33.333 10.16 0.00 42.66 3.49
3017 4904 5.674052 TTAAATTGGGTTATGCATGTGCT 57.326 34.783 10.16 0.00 42.66 4.40
3018 4905 6.923928 AATTAAATTGGGTTATGCATGTGC 57.076 33.333 10.16 0.00 42.50 4.57
3020 4907 9.777297 GGAATAATTAAATTGGGTTATGCATGT 57.223 29.630 10.16 0.00 0.00 3.21
3021 4908 9.775854 TGGAATAATTAAATTGGGTTATGCATG 57.224 29.630 10.16 0.00 0.00 4.06
3023 4910 9.995003 GATGGAATAATTAAATTGGGTTATGCA 57.005 29.630 0.00 0.00 0.00 3.96
3027 4914 9.944079 TGGAGATGGAATAATTAAATTGGGTTA 57.056 29.630 0.00 0.00 0.00 2.85
3028 4915 8.852671 TGGAGATGGAATAATTAAATTGGGTT 57.147 30.769 0.00 0.00 0.00 4.11
3029 4916 8.852671 TTGGAGATGGAATAATTAAATTGGGT 57.147 30.769 0.00 0.00 0.00 4.51
3037 4924 9.793259 GTTGGACTATTGGAGATGGAATAATTA 57.207 33.333 0.00 0.00 0.00 1.40
3038 4925 7.445402 CGTTGGACTATTGGAGATGGAATAATT 59.555 37.037 0.00 0.00 0.00 1.40
3039 4926 6.936900 CGTTGGACTATTGGAGATGGAATAAT 59.063 38.462 0.00 0.00 0.00 1.28
3040 4927 6.126883 ACGTTGGACTATTGGAGATGGAATAA 60.127 38.462 0.00 0.00 0.00 1.40
3041 4928 5.365605 ACGTTGGACTATTGGAGATGGAATA 59.634 40.000 0.00 0.00 0.00 1.75
3042 4929 4.164221 ACGTTGGACTATTGGAGATGGAAT 59.836 41.667 0.00 0.00 0.00 3.01
3043 4930 3.517901 ACGTTGGACTATTGGAGATGGAA 59.482 43.478 0.00 0.00 0.00 3.53
3044 4931 3.104512 ACGTTGGACTATTGGAGATGGA 58.895 45.455 0.00 0.00 0.00 3.41
3045 4932 3.543680 ACGTTGGACTATTGGAGATGG 57.456 47.619 0.00 0.00 0.00 3.51
3046 4933 6.311445 GCATATACGTTGGACTATTGGAGATG 59.689 42.308 0.00 0.00 0.00 2.90
3047 4934 6.014584 TGCATATACGTTGGACTATTGGAGAT 60.015 38.462 0.00 0.00 0.00 2.75
3048 4935 5.303333 TGCATATACGTTGGACTATTGGAGA 59.697 40.000 0.00 0.00 0.00 3.71
3049 4936 5.538118 TGCATATACGTTGGACTATTGGAG 58.462 41.667 0.00 0.00 0.00 3.86
3050 4937 5.538849 TGCATATACGTTGGACTATTGGA 57.461 39.130 0.00 0.00 0.00 3.53
3051 4938 5.700832 ACATGCATATACGTTGGACTATTGG 59.299 40.000 0.00 0.00 0.00 3.16
3052 4939 6.785488 ACATGCATATACGTTGGACTATTG 57.215 37.500 0.00 0.00 0.00 1.90
3053 4940 7.801716 AAACATGCATATACGTTGGACTATT 57.198 32.000 0.00 0.00 0.00 1.73
3054 4941 7.801716 AAAACATGCATATACGTTGGACTAT 57.198 32.000 0.00 0.00 0.00 2.12
3055 4942 7.618502 AAAAACATGCATATACGTTGGACTA 57.381 32.000 0.00 0.00 0.00 2.59
3056 4943 6.509418 AAAAACATGCATATACGTTGGACT 57.491 33.333 0.00 0.00 0.00 3.85
3076 4963 9.058174 TCGGAAGTAATTCTATGTGAACAAAAA 57.942 29.630 2.56 0.00 37.52 1.94
3077 4964 8.610248 TCGGAAGTAATTCTATGTGAACAAAA 57.390 30.769 2.56 0.00 37.52 2.44
3078 4965 8.610248 TTCGGAAGTAATTCTATGTGAACAAA 57.390 30.769 2.56 0.00 37.52 2.83
3079 4966 8.610248 TTTCGGAAGTAATTCTATGTGAACAA 57.390 30.769 2.56 0.00 37.52 2.83
3080 4967 8.610248 TTTTCGGAAGTAATTCTATGTGAACA 57.390 30.769 2.56 0.00 37.52 3.18
3107 4994 8.948631 TGAAATGATCTAAGTCGAAAGCTATT 57.051 30.769 0.00 0.00 0.00 1.73
3150 5037 9.060547 GCTGCGGGATTTTAAAAATTAATTTTG 57.939 29.630 23.34 10.89 41.29 2.44
3151 5038 8.787852 TGCTGCGGGATTTTAAAAATTAATTTT 58.212 25.926 18.40 18.40 43.52 1.82
3152 5039 8.329203 TGCTGCGGGATTTTAAAAATTAATTT 57.671 26.923 7.64 7.64 0.00 1.82
3153 5040 7.913674 TGCTGCGGGATTTTAAAAATTAATT 57.086 28.000 4.44 0.00 0.00 1.40
3154 5041 7.412455 CGTTGCTGCGGGATTTTAAAAATTAAT 60.412 33.333 4.44 0.00 0.00 1.40
3155 5042 6.128795 CGTTGCTGCGGGATTTTAAAAATTAA 60.129 34.615 4.44 0.00 0.00 1.40
3156 5043 5.346281 CGTTGCTGCGGGATTTTAAAAATTA 59.654 36.000 4.44 0.00 0.00 1.40
3157 5044 4.151512 CGTTGCTGCGGGATTTTAAAAATT 59.848 37.500 4.44 0.00 0.00 1.82
3158 5045 3.677596 CGTTGCTGCGGGATTTTAAAAAT 59.322 39.130 4.44 0.00 0.00 1.82
3159 5046 3.053455 CGTTGCTGCGGGATTTTAAAAA 58.947 40.909 4.44 0.00 0.00 1.94
3160 5047 2.034812 ACGTTGCTGCGGGATTTTAAAA 59.965 40.909 2.51 2.51 35.98 1.52
3161 5048 1.609555 ACGTTGCTGCGGGATTTTAAA 59.390 42.857 0.00 0.00 35.98 1.52
3162 5049 1.068885 CACGTTGCTGCGGGATTTTAA 60.069 47.619 0.00 0.00 37.48 1.52
3163 5050 0.519519 CACGTTGCTGCGGGATTTTA 59.480 50.000 0.00 0.00 37.48 1.52
3164 5051 1.285641 CACGTTGCTGCGGGATTTT 59.714 52.632 0.00 0.00 37.48 1.82
3165 5052 2.953821 CACGTTGCTGCGGGATTT 59.046 55.556 0.00 0.00 37.48 2.17
3166 5053 3.737172 GCACGTTGCTGCGGGATT 61.737 61.111 6.91 0.00 40.96 3.01
3173 5060 3.726517 CTTCCCCGCACGTTGCTG 61.727 66.667 8.07 2.37 42.25 4.41
3174 5061 4.250305 ACTTCCCCGCACGTTGCT 62.250 61.111 8.07 0.00 42.25 3.91
3175 5062 3.723348 GACTTCCCCGCACGTTGC 61.723 66.667 0.00 0.00 40.69 4.17
3176 5063 2.280524 TGACTTCCCCGCACGTTG 60.281 61.111 0.00 0.00 0.00 4.10
3177 5064 2.280592 GTGACTTCCCCGCACGTT 60.281 61.111 0.00 0.00 0.00 3.99
3178 5065 4.309950 GGTGACTTCCCCGCACGT 62.310 66.667 0.00 0.00 33.48 4.49
3179 5066 2.558554 CTAGGTGACTTCCCCGCACG 62.559 65.000 0.00 0.00 43.67 5.34
3180 5067 1.218316 CTAGGTGACTTCCCCGCAC 59.782 63.158 0.00 0.00 43.67 5.34
3181 5068 0.834687 AACTAGGTGACTTCCCCGCA 60.835 55.000 0.00 0.00 43.67 5.69
3182 5069 1.136500 CTAACTAGGTGACTTCCCCGC 59.864 57.143 0.00 0.00 43.67 6.13
3183 5070 2.454538 ACTAACTAGGTGACTTCCCCG 58.545 52.381 0.00 0.00 43.67 5.73
3184 5071 3.836562 TCAACTAACTAGGTGACTTCCCC 59.163 47.826 0.16 0.00 44.56 4.81
3197 5084 9.263538 TCGTGTAAACATAAACATCAACTAACT 57.736 29.630 0.00 0.00 0.00 2.24
3198 5085 9.866936 TTCGTGTAAACATAAACATCAACTAAC 57.133 29.630 0.00 0.00 0.00 2.34
3200 5087 9.263538 ACTTCGTGTAAACATAAACATCAACTA 57.736 29.630 0.00 0.00 0.00 2.24
3201 5088 8.149973 ACTTCGTGTAAACATAAACATCAACT 57.850 30.769 0.00 0.00 0.00 3.16
3205 5092 8.427012 TCGTAACTTCGTGTAAACATAAACATC 58.573 33.333 0.00 0.00 0.00 3.06
3339 5244 4.079958 ACCCAACAGTACCAGAAAACTCTT 60.080 41.667 0.00 0.00 0.00 2.85
3351 5256 6.635030 AATCTCTTTTTCACCCAACAGTAC 57.365 37.500 0.00 0.00 0.00 2.73
3379 5284 1.296056 AATACAGGACGGCACAACGC 61.296 55.000 0.00 0.00 41.28 4.84
3406 5311 4.220821 ACATGACTCTTAACACGGATGACT 59.779 41.667 0.00 0.00 0.00 3.41
3411 5316 3.610821 CGTGACATGACTCTTAACACGGA 60.611 47.826 0.00 0.00 43.32 4.69
3412 5317 2.661675 CGTGACATGACTCTTAACACGG 59.338 50.000 0.00 0.00 43.32 4.94
3479 5429 3.128764 GGGAACAGCTATGCAGGTAAAAC 59.871 47.826 0.00 0.00 0.00 2.43
3511 5461 3.393800 CCCAAGTATATCTGCCACGAAG 58.606 50.000 0.00 0.00 0.00 3.79
3534 5484 1.705337 CGGCCGCCACTGACAAATAG 61.705 60.000 14.67 0.00 0.00 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.