Multiple sequence alignment - TraesCS7A01G314000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G314000 chr7A 100.000 4771 0 0 1 4771 448094112 448098882 0.000000e+00 8811.0
1 TraesCS7A01G314000 chr7A 88.834 609 61 4 4167 4771 512750894 512750289 0.000000e+00 741.0
2 TraesCS7A01G314000 chr7D 92.798 1680 67 27 2350 4012 394828760 394830402 0.000000e+00 2383.0
3 TraesCS7A01G314000 chr7D 90.839 1812 102 26 557 2338 394826749 394828526 0.000000e+00 2368.0
4 TraesCS7A01G314000 chr7D 90.175 570 40 11 1 557 394825912 394826478 0.000000e+00 728.0
5 TraesCS7A01G314000 chr7D 93.617 47 2 1 2579 2625 394829030 394829075 8.570000e-08 69.4
6 TraesCS7A01G314000 chr7B 93.218 1386 56 22 557 1918 394398039 394399410 0.000000e+00 2004.0
7 TraesCS7A01G314000 chr7B 92.806 1126 65 13 2194 3314 394399925 394401039 0.000000e+00 1616.0
8 TraesCS7A01G314000 chr7B 85.164 883 71 31 3315 4166 394401092 394401945 0.000000e+00 850.0
9 TraesCS7A01G314000 chr7B 87.597 258 26 5 1910 2162 394399670 394399926 1.300000e-75 294.0
10 TraesCS7A01G314000 chr7B 95.745 47 1 1 2579 2625 394400345 394400390 1.840000e-09 75.0
11 TraesCS7A01G314000 chr5D 90.016 611 57 3 4165 4771 341713057 341713667 0.000000e+00 787.0
12 TraesCS7A01G314000 chr5D 89.109 606 61 4 4170 4771 465969355 465968751 0.000000e+00 749.0
13 TraesCS7A01G314000 chr1A 89.886 613 57 4 4164 4771 308944741 308945353 0.000000e+00 784.0
14 TraesCS7A01G314000 chr1A 86.992 615 57 7 4161 4771 16422343 16421748 0.000000e+00 671.0
15 TraesCS7A01G314000 chr2D 89.525 611 60 3 4165 4771 538043266 538043876 0.000000e+00 771.0
16 TraesCS7A01G314000 chr1D 89.655 609 55 5 4167 4771 420947815 420947211 0.000000e+00 769.0
17 TraesCS7A01G314000 chr5A 89.491 609 52 8 4167 4771 393916299 393915699 0.000000e+00 760.0
18 TraesCS7A01G314000 chr3D 89.216 612 59 6 4164 4769 359903490 359902880 0.000000e+00 758.0
19 TraesCS7A01G314000 chr4D 87.622 614 66 7 4160 4768 37522434 37523042 0.000000e+00 704.0
20 TraesCS7A01G314000 chr1B 82.969 229 31 6 4156 4378 283109925 283110151 2.910000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G314000 chr7A 448094112 448098882 4770 False 8811.0 8811 100.00000 1 4771 1 chr7A.!!$F1 4770
1 TraesCS7A01G314000 chr7A 512750289 512750894 605 True 741.0 741 88.83400 4167 4771 1 chr7A.!!$R1 604
2 TraesCS7A01G314000 chr7D 394825912 394830402 4490 False 1387.1 2383 91.85725 1 4012 4 chr7D.!!$F1 4011
3 TraesCS7A01G314000 chr7B 394398039 394401945 3906 False 967.8 2004 90.90600 557 4166 5 chr7B.!!$F1 3609
4 TraesCS7A01G314000 chr5D 341713057 341713667 610 False 787.0 787 90.01600 4165 4771 1 chr5D.!!$F1 606
5 TraesCS7A01G314000 chr5D 465968751 465969355 604 True 749.0 749 89.10900 4170 4771 1 chr5D.!!$R1 601
6 TraesCS7A01G314000 chr1A 308944741 308945353 612 False 784.0 784 89.88600 4164 4771 1 chr1A.!!$F1 607
7 TraesCS7A01G314000 chr1A 16421748 16422343 595 True 671.0 671 86.99200 4161 4771 1 chr1A.!!$R1 610
8 TraesCS7A01G314000 chr2D 538043266 538043876 610 False 771.0 771 89.52500 4165 4771 1 chr2D.!!$F1 606
9 TraesCS7A01G314000 chr1D 420947211 420947815 604 True 769.0 769 89.65500 4167 4771 1 chr1D.!!$R1 604
10 TraesCS7A01G314000 chr5A 393915699 393916299 600 True 760.0 760 89.49100 4167 4771 1 chr5A.!!$R1 604
11 TraesCS7A01G314000 chr3D 359902880 359903490 610 True 758.0 758 89.21600 4164 4769 1 chr3D.!!$R1 605
12 TraesCS7A01G314000 chr4D 37522434 37523042 608 False 704.0 704 87.62200 4160 4768 1 chr4D.!!$F1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 1101 0.036306 CACCTGTCAGTAACCCACCC 59.964 60.0 0.0 0.0 0.00 4.61 F
1791 2110 0.039798 GGTGTGTCATGCTGTGCTTG 60.040 55.0 0.0 0.0 35.46 4.01 F
1794 2113 0.386858 GTGTCATGCTGTGCTTGCTG 60.387 55.0 0.0 0.0 34.38 4.41 F
1796 2115 0.386858 GTCATGCTGTGCTTGCTGTG 60.387 55.0 0.0 0.0 34.38 3.66 F
3533 4435 0.455815 CCTTTGGATTGGGCTTACGC 59.544 55.0 0.0 0.0 0.00 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2237 2836 0.524862 GCAGTGGCATCAACTTCCAG 59.475 55.000 0.0 0.0 40.72 3.86 R
3555 4457 0.311790 CACACGCCAAAGAAGCATGT 59.688 50.000 0.0 0.0 37.07 3.21 R
3556 4458 1.005294 GCACACGCCAAAGAAGCATG 61.005 55.000 0.0 0.0 0.00 4.06 R
3572 4474 1.136169 GGACGAATGTGTTTACGGCAC 60.136 52.381 0.0 0.0 35.33 5.01 R
4383 5315 0.108396 GGGGTTTTGCTTTGTGCCAT 59.892 50.000 0.0 0.0 42.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 6.872920 ACAACAAATAGAAGAAAAACAGGCA 58.127 32.000 0.00 0.00 0.00 4.75
49 50 6.273071 ACAAATAGAAGAAAAACAGGCACAC 58.727 36.000 0.00 0.00 0.00 3.82
60 61 4.385358 AACAGGCACACGAAAGAAAAAT 57.615 36.364 0.00 0.00 0.00 1.82
146 147 4.211920 AGAAACCCATGAAAACCGAGAAA 58.788 39.130 0.00 0.00 0.00 2.52
147 148 4.832823 AGAAACCCATGAAAACCGAGAAAT 59.167 37.500 0.00 0.00 0.00 2.17
161 162 9.639601 AAAACCGAGAAATAAATGAAGGAAATC 57.360 29.630 0.00 0.00 0.00 2.17
265 272 0.383949 TCAAAGAAAGCGGTGCCAAC 59.616 50.000 0.00 0.00 0.00 3.77
267 274 1.381165 AAAGAAAGCGGTGCCAACGT 61.381 50.000 3.21 0.00 0.00 3.99
321 328 3.733443 AAATGCAGACAAAACTGGGTC 57.267 42.857 0.00 0.00 38.22 4.46
339 346 0.800012 TCGTTCCAATGGCTAAACGC 59.200 50.000 16.73 0.00 43.00 4.84
365 372 2.540101 GGTTAGATTTCAGGCGACATCG 59.460 50.000 0.00 0.00 43.27 3.84
404 411 0.243907 CGTGATATAGTCCCCAGCGG 59.756 60.000 0.00 0.00 0.00 5.52
431 438 5.678955 AGTCTACATTAGAGTTTGGGGAC 57.321 43.478 0.00 0.00 34.92 4.46
445 452 3.435186 GGACTTGGGCGAGCAAGC 61.435 66.667 0.00 0.00 32.03 4.01
498 505 8.592105 ATTTGGGCATATTGATTTTCGTATTG 57.408 30.769 0.00 0.00 0.00 1.90
541 555 4.137849 GTTGGACAAACTTTACGTAGGC 57.862 45.455 0.00 0.00 35.75 3.93
582 867 4.499183 AGACCATTCTCGAATTCTCACAC 58.501 43.478 3.52 0.00 0.00 3.82
589 875 1.135774 TCGAATTCTCACACGAGGACG 60.136 52.381 3.52 0.00 45.75 4.79
608 899 1.063469 CGGACAACAGCGTCAAAACTT 59.937 47.619 0.00 0.00 37.66 2.66
647 938 4.828072 AACGAGAGGAGGAAAAAGCTAT 57.172 40.909 0.00 0.00 0.00 2.97
701 992 4.740902 AGTCATTTTCCCTAGCCAACTTT 58.259 39.130 0.00 0.00 0.00 2.66
809 1101 0.036306 CACCTGTCAGTAACCCACCC 59.964 60.000 0.00 0.00 0.00 4.61
860 1152 3.359033 CATCTTGACCCCACATGTCATT 58.641 45.455 0.00 0.00 41.99 2.57
869 1161 2.621147 CCCACATGTCATTCACCCATCA 60.621 50.000 0.00 0.00 0.00 3.07
878 1170 2.796483 TTCACCCATCAACGCCCGAG 62.796 60.000 0.00 0.00 0.00 4.63
879 1171 4.778143 ACCCATCAACGCCCGAGC 62.778 66.667 0.00 0.00 0.00 5.03
962 1254 9.649316 TCCCAAAAATAAAGGAGAAAAAGTAGA 57.351 29.630 0.00 0.00 0.00 2.59
963 1255 9.914131 CCCAAAAATAAAGGAGAAAAAGTAGAG 57.086 33.333 0.00 0.00 0.00 2.43
1170 1462 2.446036 ATCTACCGCTGGGACCCC 60.446 66.667 8.45 2.69 36.97 4.95
1278 1570 1.118965 TCAAGAACGAGCAGGACCCA 61.119 55.000 0.00 0.00 0.00 4.51
1650 1942 0.178975 CAGAGGAGTATCTCGGCCCT 60.179 60.000 0.00 0.00 38.71 5.19
1681 1973 5.333199 GCTCCATGCCAACAGGTATACCT 62.333 52.174 19.27 19.27 40.88 3.08
1696 1988 2.561209 TACCTGCACCTCCCTCATAA 57.439 50.000 0.00 0.00 0.00 1.90
1708 2007 5.848921 ACCTCCCTCATAAGCTCTTGATATT 59.151 40.000 0.00 0.00 0.00 1.28
1749 2048 3.106242 TGAGTATGTTGCGTCTGTGTT 57.894 42.857 0.00 0.00 0.00 3.32
1750 2049 3.462982 TGAGTATGTTGCGTCTGTGTTT 58.537 40.909 0.00 0.00 0.00 2.83
1761 2080 3.485877 GCGTCTGTGTTTTGGATCTATGC 60.486 47.826 0.00 0.00 0.00 3.14
1768 2087 6.182627 TGTGTTTTGGATCTATGCTTGATCT 58.817 36.000 11.69 0.00 39.95 2.75
1788 2107 0.318107 GTTGGTGTGTCATGCTGTGC 60.318 55.000 0.00 0.00 0.00 4.57
1789 2108 0.466007 TTGGTGTGTCATGCTGTGCT 60.466 50.000 0.00 0.00 0.00 4.40
1790 2109 0.466007 TGGTGTGTCATGCTGTGCTT 60.466 50.000 0.00 0.00 0.00 3.91
1791 2110 0.039798 GGTGTGTCATGCTGTGCTTG 60.040 55.000 0.00 0.00 35.46 4.01
1792 2111 0.662374 GTGTGTCATGCTGTGCTTGC 60.662 55.000 0.00 0.00 34.38 4.01
1793 2112 0.820482 TGTGTCATGCTGTGCTTGCT 60.820 50.000 0.00 0.00 34.38 3.91
1794 2113 0.386858 GTGTCATGCTGTGCTTGCTG 60.387 55.000 0.00 0.00 34.38 4.41
1795 2114 0.820482 TGTCATGCTGTGCTTGCTGT 60.820 50.000 0.00 0.00 34.38 4.40
1796 2115 0.386858 GTCATGCTGTGCTTGCTGTG 60.387 55.000 0.00 0.00 34.38 3.66
1799 2118 1.034356 ATGCTGTGCTTGCTGTGAAA 58.966 45.000 0.00 0.00 0.00 2.69
1808 2127 3.825585 TGCTTGCTGTGAAATGGTTATGA 59.174 39.130 0.00 0.00 0.00 2.15
1815 2134 6.038936 TGCTGTGAAATGGTTATGAGATGATG 59.961 38.462 0.00 0.00 0.00 3.07
1828 2148 1.139058 AGATGATGCGTAGGGTGGTTC 59.861 52.381 0.00 0.00 0.00 3.62
1847 2167 5.655532 TGGTTCTATCTCGCTTAGGTAGTTT 59.344 40.000 3.87 0.00 39.59 2.66
1852 2175 3.159472 TCTCGCTTAGGTAGTTTGGTGA 58.841 45.455 0.00 0.00 0.00 4.02
1854 2177 3.159472 TCGCTTAGGTAGTTTGGTGAGA 58.841 45.455 0.00 0.00 0.00 3.27
1918 2244 3.348119 TGTGGCGCTGAATTATTTGGTA 58.652 40.909 7.64 0.00 0.00 3.25
1920 2246 2.353269 TGGCGCTGAATTATTTGGTACG 59.647 45.455 7.64 0.00 0.00 3.67
1924 2250 5.447548 GGCGCTGAATTATTTGGTACGTTTA 60.448 40.000 7.64 0.00 0.00 2.01
1968 2564 1.301293 GCTAGCTCCCTGGCAAAGT 59.699 57.895 7.70 0.00 44.20 2.66
1981 2577 3.609853 TGGCAAAGTGGTGTAGATGATC 58.390 45.455 0.00 0.00 0.00 2.92
1987 2583 4.537135 AGTGGTGTAGATGATCGTTTGT 57.463 40.909 0.00 0.00 0.00 2.83
2003 2599 6.627395 TCGTTTGTTGGATAGTGTGAAATT 57.373 33.333 0.00 0.00 0.00 1.82
2007 2603 4.006989 TGTTGGATAGTGTGAAATTCCCG 58.993 43.478 0.00 0.00 0.00 5.14
2021 2617 4.783764 AATTCCCGTTTGGTTGAAGATC 57.216 40.909 0.00 0.00 34.77 2.75
2031 2627 4.955811 TGGTTGAAGATCGCCTATACAT 57.044 40.909 0.00 0.00 0.00 2.29
2036 2632 8.590204 TGGTTGAAGATCGCCTATACATATTAA 58.410 33.333 0.00 0.00 0.00 1.40
2039 2635 8.362464 TGAAGATCGCCTATACATATTAAGGT 57.638 34.615 0.00 0.00 0.00 3.50
2154 2753 6.968263 TTTGGTGGATAGTGTGAAATTTCA 57.032 33.333 16.91 16.91 34.20 2.69
2160 2759 6.863126 GTGGATAGTGTGAAATTTCAGTTTGG 59.137 38.462 21.05 0.00 37.98 3.28
2161 2760 6.549364 TGGATAGTGTGAAATTTCAGTTTGGT 59.451 34.615 21.05 6.40 37.98 3.67
2162 2761 7.069331 TGGATAGTGTGAAATTTCAGTTTGGTT 59.931 33.333 21.05 3.75 37.98 3.67
2163 2762 8.573035 GGATAGTGTGAAATTTCAGTTTGGTTA 58.427 33.333 21.05 7.74 37.98 2.85
2164 2763 9.959749 GATAGTGTGAAATTTCAGTTTGGTTAA 57.040 29.630 21.05 1.50 37.98 2.01
2166 2765 8.702163 AGTGTGAAATTTCAGTTTGGTTAAAG 57.298 30.769 21.05 0.00 37.98 1.85
2167 2766 8.527810 AGTGTGAAATTTCAGTTTGGTTAAAGA 58.472 29.630 21.05 0.00 37.98 2.52
2168 2767 9.145865 GTGTGAAATTTCAGTTTGGTTAAAGAA 57.854 29.630 21.05 0.00 37.98 2.52
2169 2768 9.883142 TGTGAAATTTCAGTTTGGTTAAAGAAT 57.117 25.926 21.05 0.00 37.98 2.40
2209 2808 4.142600 GGCATGAGTGACTGTTTGTATTCC 60.143 45.833 0.00 0.00 0.00 3.01
2236 2835 3.507162 TCTGGTCTTTGGCTGATTGAA 57.493 42.857 0.00 0.00 0.00 2.69
2237 2836 3.149196 TCTGGTCTTTGGCTGATTGAAC 58.851 45.455 0.00 0.00 0.00 3.18
2305 2904 4.103365 AGTAGTCTGCTTCTTCATGACG 57.897 45.455 0.00 0.00 33.40 4.35
2308 2907 1.651138 GTCTGCTTCTTCATGACGTCG 59.349 52.381 11.62 0.00 0.00 5.12
2325 2924 4.047142 ACGTCGTGAGTCTTTTTCCTTAC 58.953 43.478 0.00 0.00 0.00 2.34
2343 2943 6.962182 TCCTTACCTGATTCTTGATGACATT 58.038 36.000 0.00 0.00 0.00 2.71
2345 2945 6.039047 CCTTACCTGATTCTTGATGACATTGG 59.961 42.308 0.00 0.00 0.00 3.16
2352 2967 2.309755 TCTTGATGACATTGGAAGCCCT 59.690 45.455 0.00 0.00 0.00 5.19
2391 3215 3.140325 TCTTGACGAGGCCTTGATTTT 57.860 42.857 27.65 3.37 0.00 1.82
2444 3269 7.786030 TCTTTCAGTATAGAGCATGCTAGTTT 58.214 34.615 22.74 8.87 0.00 2.66
2456 3281 4.843728 CATGCTAGTTTCCCTTTACCAGA 58.156 43.478 0.00 0.00 0.00 3.86
2965 3791 1.299850 GTTCCGCACCTTGGCAAAC 60.300 57.895 0.00 0.00 0.00 2.93
3025 3851 5.091261 AGATGTTAACAGCTGGGTAGAAG 57.909 43.478 24.72 0.00 41.59 2.85
3131 3958 3.193471 CCAACAAACGGCATGGTTC 57.807 52.632 0.00 0.00 0.00 3.62
3267 4095 9.771534 AGTATTTATCTGATCTGGCTTTACTTC 57.228 33.333 0.00 0.00 0.00 3.01
3272 4100 5.809001 TCTGATCTGGCTTTACTTCATGTT 58.191 37.500 0.00 0.00 0.00 2.71
3274 4102 6.716628 TCTGATCTGGCTTTACTTCATGTTTT 59.283 34.615 0.00 0.00 0.00 2.43
3285 4113 9.390795 CTTTACTTCATGTTTTCACTGAGATTG 57.609 33.333 0.00 0.00 0.00 2.67
3324 4204 8.570488 TCTGATTTATCATATTTGTCACCATGC 58.430 33.333 0.00 0.00 36.02 4.06
3325 4205 8.467963 TGATTTATCATATTTGTCACCATGCT 57.532 30.769 0.00 0.00 0.00 3.79
3344 4224 8.166061 ACCATGCTCCTGTCATAACATATAATT 58.834 33.333 0.00 0.00 34.13 1.40
3466 4359 6.108015 AGGTTTTAGTCGTTTGTCACTTGTA 58.892 36.000 0.00 0.00 0.00 2.41
3506 4402 6.864685 CACATATCTGCAAGTGTTTCAAATGT 59.135 34.615 0.00 0.00 33.76 2.71
3533 4435 0.455815 CCTTTGGATTGGGCTTACGC 59.544 55.000 0.00 0.00 0.00 4.42
3553 4455 4.202419 ACGCCTGTAGAGTCTGAGAGATAT 60.202 45.833 1.86 0.00 0.00 1.63
3554 4456 4.154015 CGCCTGTAGAGTCTGAGAGATATG 59.846 50.000 1.86 0.00 0.00 1.78
3555 4457 5.312895 GCCTGTAGAGTCTGAGAGATATGA 58.687 45.833 1.86 0.00 0.00 2.15
3556 4458 5.181245 GCCTGTAGAGTCTGAGAGATATGAC 59.819 48.000 1.86 0.00 0.00 3.06
3557 4459 6.295249 CCTGTAGAGTCTGAGAGATATGACA 58.705 44.000 1.86 0.00 32.41 3.58
3558 4460 6.942005 CCTGTAGAGTCTGAGAGATATGACAT 59.058 42.308 1.86 0.00 32.41 3.06
3559 4461 7.094677 CCTGTAGAGTCTGAGAGATATGACATG 60.095 44.444 1.86 0.00 32.41 3.21
3560 4462 5.710513 AGAGTCTGAGAGATATGACATGC 57.289 43.478 0.00 0.00 32.41 4.06
3561 4463 5.387788 AGAGTCTGAGAGATATGACATGCT 58.612 41.667 0.00 0.00 32.41 3.79
3562 4464 5.834742 AGAGTCTGAGAGATATGACATGCTT 59.165 40.000 0.00 0.00 32.41 3.91
3563 4465 6.016024 AGAGTCTGAGAGATATGACATGCTTC 60.016 42.308 0.00 0.00 32.41 3.86
3564 4466 5.834742 AGTCTGAGAGATATGACATGCTTCT 59.165 40.000 0.00 0.00 32.41 2.85
3565 4467 6.324512 AGTCTGAGAGATATGACATGCTTCTT 59.675 38.462 0.00 0.00 32.41 2.52
3566 4468 6.985645 GTCTGAGAGATATGACATGCTTCTTT 59.014 38.462 0.00 0.00 0.00 2.52
3567 4469 6.985059 TCTGAGAGATATGACATGCTTCTTTG 59.015 38.462 0.00 0.00 0.00 2.77
3568 4470 6.053650 TGAGAGATATGACATGCTTCTTTGG 58.946 40.000 0.00 0.00 0.00 3.28
3569 4471 4.820716 AGAGATATGACATGCTTCTTTGGC 59.179 41.667 0.00 0.00 0.00 4.52
3570 4472 3.562973 AGATATGACATGCTTCTTTGGCG 59.437 43.478 0.00 0.00 0.00 5.69
3571 4473 1.538047 ATGACATGCTTCTTTGGCGT 58.462 45.000 0.00 0.00 0.00 5.68
3574 4476 3.096541 CATGCTTCTTTGGCGTGTG 57.903 52.632 0.00 0.00 40.56 3.82
3575 4477 1.005294 CATGCTTCTTTGGCGTGTGC 61.005 55.000 0.00 0.00 40.56 4.57
3957 4860 5.186198 GCTGTATCTAGTTTGGTGGTTCAT 58.814 41.667 0.00 0.00 0.00 2.57
4023 4951 9.944663 TTCATAAACTTTTGAGTATGTGTTGTC 57.055 29.630 0.00 0.00 0.00 3.18
4033 4961 6.688578 TGAGTATGTGTTGTCTACTTCCTTC 58.311 40.000 0.00 0.00 0.00 3.46
4038 4966 3.982058 GTGTTGTCTACTTCCTTCGTCTG 59.018 47.826 0.00 0.00 0.00 3.51
4049 4977 5.011738 ACTTCCTTCGTCTGAGGAACATAAA 59.988 40.000 8.59 1.64 36.86 1.40
4061 4989 3.435671 AGGAACATAAACGCTTACAGTGC 59.564 43.478 0.00 0.00 0.00 4.40
4065 4993 3.930848 ACATAAACGCTTACAGTGCTACC 59.069 43.478 0.00 0.00 0.00 3.18
4074 5002 2.738013 ACAGTGCTACCGAGTTTACC 57.262 50.000 0.00 0.00 0.00 2.85
4075 5003 1.965643 ACAGTGCTACCGAGTTTACCA 59.034 47.619 0.00 0.00 0.00 3.25
4096 5024 3.857854 CGGCACAGCTTAGCGCAG 61.858 66.667 11.47 0.00 42.61 5.18
4113 5041 2.268920 GCTTCCCATCGCTCACCA 59.731 61.111 0.00 0.00 0.00 4.17
4117 5045 0.904865 TTCCCATCGCTCACCACTCT 60.905 55.000 0.00 0.00 0.00 3.24
4126 5054 0.888619 CTCACCACTCTCGTTGCCTA 59.111 55.000 0.00 0.00 0.00 3.93
4135 5063 3.259876 ACTCTCGTTGCCTACCAATACAA 59.740 43.478 0.00 0.00 35.55 2.41
4144 5072 3.963129 CCTACCAATACAAAGGCAAGGA 58.037 45.455 0.00 0.00 34.74 3.36
4150 5078 4.283212 CCAATACAAAGGCAAGGAGGAAAA 59.717 41.667 0.00 0.00 0.00 2.29
4157 5085 1.956802 CAAGGAGGAAAACGGTGGC 59.043 57.895 0.00 0.00 0.00 5.01
4193 5121 2.510691 CACCGCGCGACCCTATTT 60.511 61.111 34.63 1.06 0.00 1.40
4195 5123 1.376295 ACCGCGCGACCCTATTTTT 60.376 52.632 34.63 0.00 0.00 1.94
4298 5230 0.688487 TTTCGACTCATCCCCGGTTT 59.312 50.000 0.00 0.00 0.00 3.27
4308 5240 0.179023 TCCCCGGTTTAAGTTTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
4366 5298 4.633596 CGCGCGCGCTTATCCTTG 62.634 66.667 45.97 27.76 39.32 3.61
4383 5315 4.189580 GCCTGGCCCGCCTATCAA 62.190 66.667 7.66 0.00 36.94 2.57
4440 5372 1.005450 GCTATTCCCACCAAACCCTCA 59.995 52.381 0.00 0.00 0.00 3.86
4487 5420 4.175337 CCCGTCCATGGCCGACAT 62.175 66.667 18.40 0.00 41.57 3.06
4655 5590 1.671054 CGGTCGCCAAGGTCAATGT 60.671 57.895 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 6.862209 TCATTTATTTCTCGGTTTTCATGGG 58.138 36.000 0.00 0.00 0.00 4.00
146 147 8.364142 TGTTTTCAACCGATTTCCTTCATTTAT 58.636 29.630 0.00 0.00 0.00 1.40
147 148 7.717568 TGTTTTCAACCGATTTCCTTCATTTA 58.282 30.769 0.00 0.00 0.00 1.40
192 195 9.503427 CTTCCGTATTCTTTTATTTCATCAACC 57.497 33.333 0.00 0.00 0.00 3.77
244 251 1.327303 TGGCACCGCTTTCTTTGATT 58.673 45.000 0.00 0.00 0.00 2.57
265 272 1.000145 TCTCGATCGAGACACTCACG 59.000 55.000 37.31 15.22 45.26 4.35
305 312 1.002792 GAACGACCCAGTTTTGTCTGC 60.003 52.381 0.00 0.00 34.00 4.26
321 328 0.520412 CGCGTTTAGCCATTGGAACG 60.520 55.000 18.71 18.71 45.39 3.95
345 352 3.243177 GTCGATGTCGCCTGAAATCTAAC 59.757 47.826 0.00 0.00 36.79 2.34
346 353 3.119280 TGTCGATGTCGCCTGAAATCTAA 60.119 43.478 0.00 0.00 36.79 2.10
347 354 2.425668 TGTCGATGTCGCCTGAAATCTA 59.574 45.455 0.00 0.00 36.79 1.98
348 355 1.204704 TGTCGATGTCGCCTGAAATCT 59.795 47.619 0.00 0.00 36.79 2.40
349 356 1.640428 TGTCGATGTCGCCTGAAATC 58.360 50.000 0.00 0.00 39.60 2.17
350 357 2.315925 ATGTCGATGTCGCCTGAAAT 57.684 45.000 0.00 0.00 39.60 2.17
356 363 4.486090 ACAAGATATATGTCGATGTCGCC 58.514 43.478 7.72 0.00 39.60 5.54
357 364 7.742019 ATAACAAGATATATGTCGATGTCGC 57.258 36.000 12.08 0.00 39.60 5.19
404 411 6.349363 CCCCAAACTCTAATGTAGACTTTTGC 60.349 42.308 8.11 0.00 34.43 3.68
472 479 9.044150 CAATACGAAAATCAATATGCCCAAATT 57.956 29.630 0.00 0.00 0.00 1.82
511 518 9.275398 ACGTAAAGTTTGTCCAACTATATGAAA 57.725 29.630 0.00 0.00 45.77 2.69
512 519 8.836268 ACGTAAAGTTTGTCCAACTATATGAA 57.164 30.769 0.00 0.00 45.77 2.57
514 521 8.814235 CCTACGTAAAGTTTGTCCAACTATATG 58.186 37.037 0.00 0.00 45.77 1.78
518 532 4.990426 GCCTACGTAAAGTTTGTCCAACTA 59.010 41.667 0.00 0.00 45.77 2.24
582 867 2.805353 CGCTGTTGTCCGTCCTCG 60.805 66.667 0.00 0.00 0.00 4.63
589 875 2.844122 AAGTTTTGACGCTGTTGTCC 57.156 45.000 0.00 0.00 38.11 4.02
608 899 7.817962 CCTCTCGTTTTTCAGGTCTTCTATTTA 59.182 37.037 0.00 0.00 0.00 1.40
647 938 3.380004 CGCCAAGCTTTATGGGATTTGTA 59.620 43.478 0.00 0.00 38.44 2.41
675 966 4.591321 TGGCTAGGGAAAATGACTTCAT 57.409 40.909 0.00 0.00 38.41 2.57
701 992 2.293122 CCGTTTGCAAGATGACAAAGGA 59.707 45.455 0.00 0.00 41.70 3.36
809 1101 0.034477 AATGGCGGTTCTAGGGTTGG 60.034 55.000 0.00 0.00 0.00 3.77
860 1152 3.309436 CTCGGGCGTTGATGGGTGA 62.309 63.158 0.00 0.00 0.00 4.02
869 1161 3.069158 GGGTATATATATGCTCGGGCGTT 59.931 47.826 7.62 0.00 42.25 4.84
918 1210 0.252742 GAGGTTGGAGAGGGGAAGGA 60.253 60.000 0.00 0.00 0.00 3.36
960 1252 5.394663 CGTTTCTCTCTCTCTCTCTCTCTCT 60.395 48.000 0.00 0.00 0.00 3.10
961 1253 4.806247 CGTTTCTCTCTCTCTCTCTCTCTC 59.194 50.000 0.00 0.00 0.00 3.20
962 1254 4.759782 CGTTTCTCTCTCTCTCTCTCTCT 58.240 47.826 0.00 0.00 0.00 3.10
963 1255 3.309954 GCGTTTCTCTCTCTCTCTCTCTC 59.690 52.174 0.00 0.00 0.00 3.20
964 1256 3.270877 GCGTTTCTCTCTCTCTCTCTCT 58.729 50.000 0.00 0.00 0.00 3.10
965 1257 2.030457 CGCGTTTCTCTCTCTCTCTCTC 59.970 54.545 0.00 0.00 0.00 3.20
1278 1570 3.470888 CGGCGGAAGGTGAGGGAT 61.471 66.667 0.00 0.00 0.00 3.85
1305 1597 4.478371 CTGCCGCAGATGCCCTCA 62.478 66.667 15.74 0.00 37.91 3.86
1521 1813 2.359355 GGACTGGTAGATCTCCTTCCCA 60.359 54.545 0.00 0.00 31.88 4.37
1563 1855 0.248843 TGCACTCGTACATGCCATCA 59.751 50.000 10.33 0.00 41.33 3.07
1681 1973 0.833287 GAGCTTATGAGGGAGGTGCA 59.167 55.000 0.00 0.00 0.00 4.57
1688 1980 6.528321 TCACAATATCAAGAGCTTATGAGGG 58.472 40.000 8.18 0.00 0.00 4.30
1696 1988 7.555195 TCATCACAATTCACAATATCAAGAGCT 59.445 33.333 0.00 0.00 0.00 4.09
1708 2007 6.600427 ACTCAAGCATATCATCACAATTCACA 59.400 34.615 0.00 0.00 0.00 3.58
1729 2028 2.812358 ACACAGACGCAACATACTCA 57.188 45.000 0.00 0.00 0.00 3.41
1749 2048 5.591472 CCAACAGATCAAGCATAGATCCAAA 59.409 40.000 8.78 0.00 42.19 3.28
1750 2049 5.128205 CCAACAGATCAAGCATAGATCCAA 58.872 41.667 8.78 0.00 42.19 3.53
1761 2080 3.365666 GCATGACACACCAACAGATCAAG 60.366 47.826 0.00 0.00 0.00 3.02
1768 2087 1.023502 CACAGCATGACACACCAACA 58.976 50.000 0.00 0.00 39.69 3.33
1788 2107 5.885230 TCTCATAACCATTTCACAGCAAG 57.115 39.130 0.00 0.00 0.00 4.01
1789 2108 5.945191 TCATCTCATAACCATTTCACAGCAA 59.055 36.000 0.00 0.00 0.00 3.91
1790 2109 5.499313 TCATCTCATAACCATTTCACAGCA 58.501 37.500 0.00 0.00 0.00 4.41
1791 2110 6.436261 CATCATCTCATAACCATTTCACAGC 58.564 40.000 0.00 0.00 0.00 4.40
1792 2111 6.436261 GCATCATCTCATAACCATTTCACAG 58.564 40.000 0.00 0.00 0.00 3.66
1793 2112 5.007921 CGCATCATCTCATAACCATTTCACA 59.992 40.000 0.00 0.00 0.00 3.58
1794 2113 5.008019 ACGCATCATCTCATAACCATTTCAC 59.992 40.000 0.00 0.00 0.00 3.18
1795 2114 5.125356 ACGCATCATCTCATAACCATTTCA 58.875 37.500 0.00 0.00 0.00 2.69
1796 2115 5.679734 ACGCATCATCTCATAACCATTTC 57.320 39.130 0.00 0.00 0.00 2.17
1799 2118 4.323028 CCCTACGCATCATCTCATAACCAT 60.323 45.833 0.00 0.00 0.00 3.55
1808 2127 1.139058 GAACCACCCTACGCATCATCT 59.861 52.381 0.00 0.00 0.00 2.90
1815 2134 1.001597 CGAGATAGAACCACCCTACGC 60.002 57.143 0.00 0.00 0.00 4.42
1828 2148 5.067413 TCACCAAACTACCTAAGCGAGATAG 59.933 44.000 0.00 0.00 0.00 2.08
1847 2167 2.902705 ACGCACTTAGTTTCTCACCA 57.097 45.000 0.00 0.00 0.00 4.17
1852 2175 7.609056 TCCTAGATAAAACGCACTTAGTTTCT 58.391 34.615 0.00 0.00 40.49 2.52
1854 2177 7.609056 TCTCCTAGATAAAACGCACTTAGTTT 58.391 34.615 0.00 0.00 42.86 2.66
1918 2244 6.441093 AACAGATGATCATTGCATAAACGT 57.559 33.333 10.14 0.00 0.00 3.99
1920 2246 9.443283 GAAGTAACAGATGATCATTGCATAAAC 57.557 33.333 10.14 3.48 0.00 2.01
1924 2250 7.876936 AAGAAGTAACAGATGATCATTGCAT 57.123 32.000 10.14 5.99 0.00 3.96
1968 2564 4.000325 CCAACAAACGATCATCTACACCA 59.000 43.478 0.00 0.00 0.00 4.17
1981 2577 5.856455 GGAATTTCACACTATCCAACAAACG 59.144 40.000 0.00 0.00 0.00 3.60
1987 2583 4.295141 ACGGGAATTTCACACTATCCAA 57.705 40.909 0.00 0.00 31.63 3.53
2003 2599 1.803334 CGATCTTCAACCAAACGGGA 58.197 50.000 0.00 0.00 41.15 5.14
2007 2603 4.873827 TGTATAGGCGATCTTCAACCAAAC 59.126 41.667 0.00 0.00 0.00 2.93
2021 2617 8.683615 TCACTGATACCTTAATATGTATAGGCG 58.316 37.037 0.00 0.00 0.00 5.52
2082 2681 5.105351 GGGGCTAGCAAAAATGTAACAGATT 60.105 40.000 18.24 0.00 0.00 2.40
2109 2708 2.495669 TGATCATCTACACCGCTTCACA 59.504 45.455 0.00 0.00 0.00 3.58
2154 2753 8.918202 TGTATCAGTCATTCTTTAACCAAACT 57.082 30.769 0.00 0.00 0.00 2.66
2163 2762 9.023962 TGCCTTAAAATGTATCAGTCATTCTTT 57.976 29.630 0.00 0.00 34.92 2.52
2164 2763 8.579850 TGCCTTAAAATGTATCAGTCATTCTT 57.420 30.769 0.00 0.00 34.92 2.52
2165 2764 8.627403 CATGCCTTAAAATGTATCAGTCATTCT 58.373 33.333 0.00 0.00 34.92 2.40
2166 2765 8.623903 TCATGCCTTAAAATGTATCAGTCATTC 58.376 33.333 0.00 0.00 34.92 2.67
2167 2766 8.523915 TCATGCCTTAAAATGTATCAGTCATT 57.476 30.769 0.00 0.00 37.14 2.57
2168 2767 7.776969 ACTCATGCCTTAAAATGTATCAGTCAT 59.223 33.333 0.00 0.00 0.00 3.06
2169 2768 7.066163 CACTCATGCCTTAAAATGTATCAGTCA 59.934 37.037 0.00 0.00 0.00 3.41
2170 2769 7.280876 TCACTCATGCCTTAAAATGTATCAGTC 59.719 37.037 0.00 0.00 0.00 3.51
2171 2770 7.066284 GTCACTCATGCCTTAAAATGTATCAGT 59.934 37.037 0.00 0.00 0.00 3.41
2209 2808 5.964958 TCAGCCAAAGACCAGATAAAAAG 57.035 39.130 0.00 0.00 0.00 2.27
2236 2835 1.901591 CAGTGGCATCAACTTCCAGT 58.098 50.000 0.00 0.00 34.04 4.00
2237 2836 0.524862 GCAGTGGCATCAACTTCCAG 59.475 55.000 0.00 0.00 40.72 3.86
2305 2904 4.448060 CAGGTAAGGAAAAAGACTCACGAC 59.552 45.833 0.00 0.00 0.00 4.34
2308 2907 6.937465 AGAATCAGGTAAGGAAAAAGACTCAC 59.063 38.462 0.00 0.00 0.00 3.51
2325 2924 5.450137 GCTTCCAATGTCATCAAGAATCAGG 60.450 44.000 4.16 0.00 0.00 3.86
2359 2974 4.381079 GCCTCGTCAAGAATCAGACTACTT 60.381 45.833 4.77 0.00 32.68 2.24
2365 3189 1.561643 AGGCCTCGTCAAGAATCAGA 58.438 50.000 0.00 0.00 0.00 3.27
2391 3215 6.461788 GGCCACCACAAATAAAAGTAACTTCA 60.462 38.462 0.00 0.00 0.00 3.02
2444 3269 9.196139 CATAACCATAATTTTCTGGTAAAGGGA 57.804 33.333 7.28 0.00 44.97 4.20
2636 3462 2.036089 TGGGTTTTGGTTTCATTACCGC 59.964 45.455 0.00 0.00 41.28 5.68
2639 3465 4.329462 TGCTGGGTTTTGGTTTCATTAC 57.671 40.909 0.00 0.00 0.00 1.89
2965 3791 1.202927 ACACCCATCAGTTCACCCTTG 60.203 52.381 0.00 0.00 0.00 3.61
3025 3851 6.071840 TGGACTACTGAAGAGCTAGTTCTTTC 60.072 42.308 21.09 13.66 37.53 2.62
3116 3943 1.072331 AGAGAGAACCATGCCGTTTGT 59.928 47.619 0.00 0.00 0.00 2.83
3131 3958 8.316640 ACACTGCTTCAACTAAATAAAGAGAG 57.683 34.615 0.00 0.00 0.00 3.20
3267 4095 7.644157 CAGATATGCAATCTCAGTGAAAACATG 59.356 37.037 8.01 0.00 0.00 3.21
3272 4100 6.709397 GGATCAGATATGCAATCTCAGTGAAA 59.291 38.462 8.01 0.00 0.00 2.69
3274 4102 5.543020 AGGATCAGATATGCAATCTCAGTGA 59.457 40.000 8.01 0.00 0.00 3.41
3344 4224 9.625747 TGTGCCTTATATCAGATCATGTTTTAA 57.374 29.630 0.00 0.00 0.00 1.52
3392 4275 6.970191 ACTAAGGGGAGTTGCAATTATTAGT 58.030 36.000 0.59 8.60 0.00 2.24
3438 4321 4.807304 GTGACAAACGACTAAAACCTCTGA 59.193 41.667 0.00 0.00 0.00 3.27
3439 4322 4.809426 AGTGACAAACGACTAAAACCTCTG 59.191 41.667 0.00 0.00 0.00 3.35
3440 4323 5.019785 AGTGACAAACGACTAAAACCTCT 57.980 39.130 0.00 0.00 0.00 3.69
3441 4324 5.064325 ACAAGTGACAAACGACTAAAACCTC 59.936 40.000 0.00 0.00 0.00 3.85
3442 4325 4.939439 ACAAGTGACAAACGACTAAAACCT 59.061 37.500 0.00 0.00 0.00 3.50
3443 4326 5.225899 ACAAGTGACAAACGACTAAAACC 57.774 39.130 0.00 0.00 0.00 3.27
3444 4327 6.764094 TGTACAAGTGACAAACGACTAAAAC 58.236 36.000 0.00 0.00 0.00 2.43
3466 4359 6.238676 GCAGATATGTGAAATGAGATGCTTGT 60.239 38.462 3.61 0.00 0.00 3.16
3506 4402 1.272648 CCCAATCCAAAGGGCTGAAGA 60.273 52.381 0.00 0.00 38.44 2.87
3529 4431 2.500504 TCTCTCAGACTCTACAGGCGTA 59.499 50.000 0.00 0.00 29.68 4.42
3533 4435 6.295249 TGTCATATCTCTCAGACTCTACAGG 58.705 44.000 0.00 0.00 32.41 4.00
3540 4442 5.834742 AGAAGCATGTCATATCTCTCAGACT 59.165 40.000 0.00 0.00 32.41 3.24
3544 4446 6.053650 CCAAAGAAGCATGTCATATCTCTCA 58.946 40.000 0.00 0.00 0.00 3.27
3553 4455 0.592637 CACGCCAAAGAAGCATGTCA 59.407 50.000 0.00 0.00 0.00 3.58
3554 4456 0.593128 ACACGCCAAAGAAGCATGTC 59.407 50.000 0.00 0.00 29.16 3.06
3555 4457 0.311790 CACACGCCAAAGAAGCATGT 59.688 50.000 0.00 0.00 37.07 3.21
3556 4458 1.005294 GCACACGCCAAAGAAGCATG 61.005 55.000 0.00 0.00 0.00 4.06
3557 4459 1.286880 GCACACGCCAAAGAAGCAT 59.713 52.632 0.00 0.00 0.00 3.79
3558 4460 2.721231 GCACACGCCAAAGAAGCA 59.279 55.556 0.00 0.00 0.00 3.91
3568 4470 3.015677 TGTGTTTACGGCACACGC 58.984 55.556 8.83 0.00 46.47 5.34
3572 4474 1.136169 GGACGAATGTGTTTACGGCAC 60.136 52.381 0.00 0.00 35.33 5.01
3573 4475 1.149987 GGACGAATGTGTTTACGGCA 58.850 50.000 0.00 0.00 35.33 5.69
3574 4476 1.435577 AGGACGAATGTGTTTACGGC 58.564 50.000 0.00 0.00 0.00 5.68
3575 4477 2.414138 GGAAGGACGAATGTGTTTACGG 59.586 50.000 0.00 0.00 0.00 4.02
3576 4478 3.061322 TGGAAGGACGAATGTGTTTACG 58.939 45.455 0.00 0.00 0.00 3.18
3577 4479 4.663636 CTGGAAGGACGAATGTGTTTAC 57.336 45.455 0.00 0.00 0.00 2.01
3957 4860 5.124297 ACATGCATCAAAAGATGATCAACGA 59.876 36.000 9.49 0.00 45.91 3.85
3977 4880 6.198650 TGAATTACTTGAAGCATGGACATG 57.801 37.500 7.91 7.91 41.60 3.21
3978 4881 8.523915 TTATGAATTACTTGAAGCATGGACAT 57.476 30.769 0.00 0.00 0.00 3.06
3979 4882 7.936496 TTATGAATTACTTGAAGCATGGACA 57.064 32.000 0.00 0.00 0.00 4.02
3980 4883 8.462016 AGTTTATGAATTACTTGAAGCATGGAC 58.538 33.333 0.00 0.00 0.00 4.02
4012 4915 5.467705 ACGAAGGAAGTAGACAACACATAC 58.532 41.667 0.00 0.00 0.00 2.39
4023 4951 3.506455 TGTTCCTCAGACGAAGGAAGTAG 59.494 47.826 10.76 0.00 41.74 2.57
4025 4953 2.317040 TGTTCCTCAGACGAAGGAAGT 58.683 47.619 10.76 0.00 41.74 3.01
4033 4961 2.607187 AGCGTTTATGTTCCTCAGACG 58.393 47.619 0.00 0.00 35.48 4.18
4038 4966 4.435651 GCACTGTAAGCGTTTATGTTCCTC 60.436 45.833 0.00 0.00 37.60 3.71
4049 4977 0.170561 CTCGGTAGCACTGTAAGCGT 59.829 55.000 7.94 0.00 37.60 5.07
4061 4989 1.466360 CCGACGTGGTAAACTCGGTAG 60.466 57.143 0.00 0.00 41.13 3.18
4065 4993 1.372004 TGCCGACGTGGTAAACTCG 60.372 57.895 0.00 0.00 41.21 4.18
4074 5002 2.730672 GCTAAGCTGTGCCGACGTG 61.731 63.158 0.00 0.00 0.00 4.49
4075 5003 2.432628 GCTAAGCTGTGCCGACGT 60.433 61.111 0.00 0.00 0.00 4.34
4096 5024 2.109126 GTGGTGAGCGATGGGAAGC 61.109 63.158 0.00 0.00 0.00 3.86
4098 5026 0.904865 AGAGTGGTGAGCGATGGGAA 60.905 55.000 0.00 0.00 0.00 3.97
4117 5045 3.340034 CCTTTGTATTGGTAGGCAACGA 58.660 45.455 0.00 0.00 46.39 3.85
4126 5054 2.378547 TCCTCCTTGCCTTTGTATTGGT 59.621 45.455 0.00 0.00 0.00 3.67
4135 5063 0.185175 ACCGTTTTCCTCCTTGCCTT 59.815 50.000 0.00 0.00 0.00 4.35
4144 5072 4.653888 CCCGGCCACCGTTTTCCT 62.654 66.667 2.24 0.00 46.80 3.36
4193 5121 3.581265 ACCCTAAACGGACAGGAAAAA 57.419 42.857 0.43 0.00 33.42 1.94
4195 5123 4.703379 TTTACCCTAAACGGACAGGAAA 57.297 40.909 0.43 0.00 33.42 3.13
4222 5154 2.349755 GCTGGGCCGTCTGGTTTA 59.650 61.111 0.00 0.00 37.67 2.01
4298 5230 1.334243 CCCAAAACCGACGCAAACTTA 59.666 47.619 0.00 0.00 0.00 2.24
4308 5240 1.102222 CCGTTTCACCCCAAAACCGA 61.102 55.000 0.00 0.00 33.93 4.69
4366 5298 3.497884 ATTGATAGGCGGGCCAGGC 62.498 63.158 22.06 22.06 38.92 4.85
4383 5315 0.108396 GGGGTTTTGCTTTGTGCCAT 59.892 50.000 0.00 0.00 42.00 4.40
4422 5354 2.066592 TGTGAGGGTTTGGTGGGAATA 58.933 47.619 0.00 0.00 0.00 1.75
4518 5452 1.651737 TCTTCACCTTTCCGGATGGA 58.348 50.000 25.17 7.25 44.61 3.41
4643 5578 3.039202 GCGGCGACATTGACCTTGG 62.039 63.158 12.98 0.00 0.00 3.61
4682 5617 4.592192 CGGCCTCCATCGCATCGT 62.592 66.667 0.00 0.00 0.00 3.73
4707 5642 3.672255 CTCGTCGACCGCGGCTTTA 62.672 63.158 28.58 5.35 40.67 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.