Multiple sequence alignment - TraesCS7A01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G313700 chr7A 100.000 4330 0 0 1 4330 446356680 446361009 0 7997
1 TraesCS7A01G313700 chr7D 92.689 4076 169 47 319 4330 393610484 393614494 0 5757
2 TraesCS7A01G313700 chr7B 91.809 3980 160 53 433 4325 393392975 393396875 0 5391


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G313700 chr7A 446356680 446361009 4329 False 7997 7997 100.000 1 4330 1 chr7A.!!$F1 4329
1 TraesCS7A01G313700 chr7D 393610484 393614494 4010 False 5757 5757 92.689 319 4330 1 chr7D.!!$F1 4011
2 TraesCS7A01G313700 chr7B 393392975 393396875 3900 False 5391 5391 91.809 433 4325 1 chr7B.!!$F1 3892

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 265 0.030369 GCGGGTCGTCGTATCAGATT 59.970 55.000 0.00 0.0 0.00 2.40 F
641 652 0.105964 CGAACCCACCTGTCAGTCAA 59.894 55.000 0.00 0.0 0.00 3.18 F
1316 1350 0.108615 CGGAAATCTCGTGGCAGAGT 60.109 55.000 11.84 0.0 39.21 3.24 F
1670 1726 1.018226 AGAATGACTCTGCTGTGCGC 61.018 55.000 0.00 0.0 39.77 6.09 F
1992 2048 2.546494 GCCAACTCAACGCAGCTGT 61.546 57.895 16.64 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1310 1344 0.254178 ATGATCCCACCACACTCTGC 59.746 55.000 0.00 0.0 0.00 4.26 R
1629 1674 0.458543 ATGTGACGACGTGAGGCATC 60.459 55.000 4.58 0.0 41.50 3.91 R
2552 2608 0.690192 TCCATTCCCGCAAGAACTGA 59.310 50.000 0.00 0.0 43.02 3.41 R
2554 2610 1.281867 TGATCCATTCCCGCAAGAACT 59.718 47.619 0.00 0.0 43.02 3.01 R
3779 3851 0.243636 GGCACAGGTCATTTTTCCCG 59.756 55.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.725230 GTAGACCTACGTCGATCGC 57.275 57.895 11.09 4.79 44.28 4.58
26 27 0.234365 GTAGACCTACGTCGATCGCC 59.766 60.000 11.09 0.00 44.28 5.54
27 28 1.217585 TAGACCTACGTCGATCGCCG 61.218 60.000 17.87 17.87 44.28 6.46
28 29 4.247612 ACCTACGTCGATCGCCGC 62.248 66.667 19.44 6.29 44.19 6.53
29 30 3.950254 CCTACGTCGATCGCCGCT 61.950 66.667 19.44 8.55 44.19 5.52
30 31 2.722548 CTACGTCGATCGCCGCTG 60.723 66.667 19.44 7.72 44.19 5.18
31 32 4.899687 TACGTCGATCGCCGCTGC 62.900 66.667 19.44 0.00 44.19 5.25
48 49 4.742201 CAGGTCCAGCCACCGACG 62.742 72.222 0.00 0.00 41.90 5.12
64 65 2.620459 CGCGTGTCGTATGCATGG 59.380 61.111 10.16 0.84 41.53 3.66
65 66 2.164663 CGCGTGTCGTATGCATGGT 61.165 57.895 10.16 0.00 41.53 3.55
66 67 1.636340 GCGTGTCGTATGCATGGTC 59.364 57.895 10.16 0.00 41.11 4.02
67 68 1.081556 GCGTGTCGTATGCATGGTCA 61.082 55.000 10.16 2.48 41.11 4.02
68 69 1.570813 CGTGTCGTATGCATGGTCAT 58.429 50.000 10.16 0.00 0.00 3.06
69 70 1.522676 CGTGTCGTATGCATGGTCATC 59.477 52.381 10.16 0.00 0.00 2.92
70 71 2.549926 GTGTCGTATGCATGGTCATCA 58.450 47.619 10.16 0.00 0.00 3.07
71 72 2.285220 GTGTCGTATGCATGGTCATCAC 59.715 50.000 10.16 7.51 0.00 3.06
72 73 1.867233 GTCGTATGCATGGTCATCACC 59.133 52.381 10.16 0.00 44.10 4.02
79 80 2.347114 TGGTCATCACCACTGCGG 59.653 61.111 0.00 0.00 46.63 5.69
80 81 2.213513 TGGTCATCACCACTGCGGA 61.214 57.895 0.00 0.00 46.63 5.54
81 82 1.221840 GGTCATCACCACTGCGGAT 59.778 57.895 0.00 0.00 43.17 4.18
82 83 0.811616 GGTCATCACCACTGCGGATC 60.812 60.000 0.00 0.00 43.17 3.36
83 84 0.811616 GTCATCACCACTGCGGATCC 60.812 60.000 0.00 0.00 38.63 3.36
84 85 1.221566 CATCACCACTGCGGATCCA 59.778 57.895 13.41 0.00 38.63 3.41
85 86 0.812811 CATCACCACTGCGGATCCAG 60.813 60.000 13.41 4.94 38.63 3.86
86 87 2.599645 ATCACCACTGCGGATCCAGC 62.600 60.000 13.41 16.21 38.63 4.85
87 88 3.321648 ACCACTGCGGATCCAGCA 61.322 61.111 23.59 23.59 42.99 4.41
96 97 4.221422 GATCCAGCAGCCGCCGTA 62.221 66.667 0.00 0.00 39.83 4.02
97 98 4.227134 ATCCAGCAGCCGCCGTAG 62.227 66.667 0.00 0.00 39.83 3.51
110 111 4.496429 CGTAGGTCGGGGAGCTAT 57.504 61.111 7.69 0.00 43.11 2.97
111 112 1.957562 CGTAGGTCGGGGAGCTATG 59.042 63.158 7.69 8.39 43.11 2.23
112 113 0.822532 CGTAGGTCGGGGAGCTATGT 60.823 60.000 13.29 0.00 43.11 2.29
113 114 0.960286 GTAGGTCGGGGAGCTATGTC 59.040 60.000 7.69 0.00 43.11 3.06
114 115 0.536687 TAGGTCGGGGAGCTATGTCG 60.537 60.000 0.72 0.00 40.94 4.35
115 116 2.027751 GTCGGGGAGCTATGTCGC 59.972 66.667 0.00 0.00 0.00 5.19
116 117 2.441348 TCGGGGAGCTATGTCGCA 60.441 61.111 0.00 0.00 0.00 5.10
117 118 2.028190 CGGGGAGCTATGTCGCAG 59.972 66.667 0.00 0.00 0.00 5.18
118 119 2.490148 CGGGGAGCTATGTCGCAGA 61.490 63.158 0.00 0.00 0.00 4.26
131 132 1.775385 TCGCAGACACTATGGATCCA 58.225 50.000 18.88 18.88 0.00 3.41
132 133 2.107366 TCGCAGACACTATGGATCCAA 58.893 47.619 20.67 7.48 0.00 3.53
133 134 2.159099 TCGCAGACACTATGGATCCAAC 60.159 50.000 20.67 6.44 0.00 3.77
134 135 2.565841 GCAGACACTATGGATCCAACC 58.434 52.381 20.67 4.53 0.00 3.77
135 136 2.826428 CAGACACTATGGATCCAACCG 58.174 52.381 20.67 12.34 0.00 4.44
136 137 1.139058 AGACACTATGGATCCAACCGC 59.861 52.381 20.67 6.56 0.00 5.68
137 138 0.179084 ACACTATGGATCCAACCGCG 60.179 55.000 20.67 9.15 0.00 6.46
138 139 0.104120 CACTATGGATCCAACCGCGA 59.896 55.000 20.67 0.00 0.00 5.87
139 140 0.104304 ACTATGGATCCAACCGCGAC 59.896 55.000 20.67 0.00 0.00 5.19
140 141 0.600255 CTATGGATCCAACCGCGACC 60.600 60.000 20.67 0.00 0.00 4.79
141 142 1.331399 TATGGATCCAACCGCGACCA 61.331 55.000 20.67 5.74 0.00 4.02
142 143 2.818274 GGATCCAACCGCGACCAC 60.818 66.667 8.23 0.00 0.00 4.16
143 144 2.818274 GATCCAACCGCGACCACC 60.818 66.667 8.23 0.00 0.00 4.61
144 145 3.310860 GATCCAACCGCGACCACCT 62.311 63.158 8.23 0.00 0.00 4.00
145 146 3.310860 ATCCAACCGCGACCACCTC 62.311 63.158 8.23 0.00 0.00 3.85
155 156 3.674050 GACCACCTCCCTCGCCCTA 62.674 68.421 0.00 0.00 0.00 3.53
156 157 2.840102 CCACCTCCCTCGCCCTAG 60.840 72.222 0.00 0.00 0.00 3.02
157 158 3.541713 CACCTCCCTCGCCCTAGC 61.542 72.222 0.00 0.00 0.00 3.42
158 159 4.862823 ACCTCCCTCGCCCTAGCC 62.863 72.222 0.00 0.00 34.57 3.93
169 170 4.408821 CCTAGCCGCCCTGCAACA 62.409 66.667 0.00 0.00 0.00 3.33
170 171 2.821366 CTAGCCGCCCTGCAACAG 60.821 66.667 0.00 0.00 0.00 3.16
171 172 3.315142 CTAGCCGCCCTGCAACAGA 62.315 63.158 0.00 0.00 32.44 3.41
172 173 3.605749 TAGCCGCCCTGCAACAGAC 62.606 63.158 0.00 0.00 32.44 3.51
175 176 4.680237 CGCCCTGCAACAGACCGA 62.680 66.667 0.00 0.00 32.44 4.69
176 177 3.050275 GCCCTGCAACAGACCGAC 61.050 66.667 0.00 0.00 32.44 4.79
177 178 2.743718 CCCTGCAACAGACCGACT 59.256 61.111 0.00 0.00 32.44 4.18
185 186 4.027755 CAGACCGACTGTTGCGTT 57.972 55.556 0.00 0.00 41.30 4.84
186 187 2.307363 CAGACCGACTGTTGCGTTT 58.693 52.632 0.00 0.00 41.30 3.60
187 188 0.042188 CAGACCGACTGTTGCGTTTG 60.042 55.000 0.00 0.00 41.30 2.93
188 189 0.179094 AGACCGACTGTTGCGTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
189 190 0.653636 GACCGACTGTTGCGTTTGAA 59.346 50.000 0.00 0.00 0.00 2.69
190 191 1.062880 GACCGACTGTTGCGTTTGAAA 59.937 47.619 0.00 0.00 0.00 2.69
191 192 1.063469 ACCGACTGTTGCGTTTGAAAG 59.937 47.619 0.00 0.00 0.00 2.62
192 193 1.596954 CCGACTGTTGCGTTTGAAAGG 60.597 52.381 0.00 0.00 0.00 3.11
193 194 1.063469 CGACTGTTGCGTTTGAAAGGT 59.937 47.619 0.00 0.00 0.00 3.50
194 195 2.477189 CGACTGTTGCGTTTGAAAGGTT 60.477 45.455 0.00 0.00 0.00 3.50
195 196 3.507786 GACTGTTGCGTTTGAAAGGTTT 58.492 40.909 0.00 0.00 0.00 3.27
196 197 3.249917 ACTGTTGCGTTTGAAAGGTTTG 58.750 40.909 0.00 0.00 0.00 2.93
197 198 1.996191 TGTTGCGTTTGAAAGGTTTGC 59.004 42.857 0.00 0.00 0.00 3.68
198 199 1.996191 GTTGCGTTTGAAAGGTTTGCA 59.004 42.857 0.00 0.00 0.00 4.08
199 200 2.593346 TGCGTTTGAAAGGTTTGCAT 57.407 40.000 0.00 0.00 0.00 3.96
200 201 2.468831 TGCGTTTGAAAGGTTTGCATC 58.531 42.857 0.00 0.00 0.00 3.91
201 202 2.159184 TGCGTTTGAAAGGTTTGCATCA 60.159 40.909 0.00 0.00 0.00 3.07
202 203 2.863137 GCGTTTGAAAGGTTTGCATCAA 59.137 40.909 0.00 0.00 0.00 2.57
203 204 3.060339 GCGTTTGAAAGGTTTGCATCAAG 60.060 43.478 0.00 0.00 33.71 3.02
204 205 3.490526 CGTTTGAAAGGTTTGCATCAAGG 59.509 43.478 0.00 0.00 33.71 3.61
205 206 4.692228 GTTTGAAAGGTTTGCATCAAGGA 58.308 39.130 0.00 0.00 33.71 3.36
206 207 5.299949 GTTTGAAAGGTTTGCATCAAGGAT 58.700 37.500 0.00 0.00 33.71 3.24
207 208 4.524316 TGAAAGGTTTGCATCAAGGATG 57.476 40.909 1.90 1.90 42.37 3.51
208 209 3.258872 TGAAAGGTTTGCATCAAGGATGG 59.741 43.478 8.18 0.00 40.10 3.51
209 210 2.610438 AGGTTTGCATCAAGGATGGT 57.390 45.000 8.18 0.00 40.10 3.55
210 211 2.173519 AGGTTTGCATCAAGGATGGTG 58.826 47.619 8.18 0.00 40.10 4.17
211 212 1.895131 GGTTTGCATCAAGGATGGTGT 59.105 47.619 8.18 0.00 39.98 4.16
212 213 2.299867 GGTTTGCATCAAGGATGGTGTT 59.700 45.455 8.18 0.00 39.98 3.32
213 214 3.319755 GTTTGCATCAAGGATGGTGTTG 58.680 45.455 8.18 0.00 39.98 3.33
214 215 0.889994 TGCATCAAGGATGGTGTTGC 59.110 50.000 8.18 0.00 39.98 4.17
215 216 0.889994 GCATCAAGGATGGTGTTGCA 59.110 50.000 8.18 0.00 39.98 4.08
216 217 1.273048 GCATCAAGGATGGTGTTGCAA 59.727 47.619 8.18 0.00 39.98 4.08
217 218 2.288948 GCATCAAGGATGGTGTTGCAAA 60.289 45.455 0.00 0.00 39.98 3.68
218 219 3.319755 CATCAAGGATGGTGTTGCAAAC 58.680 45.455 0.00 1.77 40.71 2.93
219 220 3.861886 CATCAAGGATGGTGTTGCAAACC 60.862 47.826 18.38 18.38 40.12 3.27
220 221 6.068555 CATCAAGGATGGTGTTGCAAACCT 62.069 45.833 22.78 13.31 40.12 3.50
221 222 7.791857 CATCAAGGATGGTGTTGCAAACCTC 62.792 48.000 22.78 18.22 40.12 3.85
230 231 3.733443 GTTGCAAACCTCATTCACCTT 57.267 42.857 0.00 0.00 42.21 3.50
231 232 3.383761 GTTGCAAACCTCATTCACCTTG 58.616 45.455 0.00 0.00 42.21 3.61
232 233 1.962807 TGCAAACCTCATTCACCTTGG 59.037 47.619 0.00 0.00 0.00 3.61
233 234 1.273327 GCAAACCTCATTCACCTTGGG 59.727 52.381 0.00 0.00 0.00 4.12
234 235 2.875296 CAAACCTCATTCACCTTGGGA 58.125 47.619 0.00 0.00 0.00 4.37
235 236 2.558359 CAAACCTCATTCACCTTGGGAC 59.442 50.000 0.00 0.00 0.00 4.46
236 237 0.324943 ACCTCATTCACCTTGGGACG 59.675 55.000 0.00 0.00 0.00 4.79
237 238 0.392998 CCTCATTCACCTTGGGACGG 60.393 60.000 0.00 0.00 0.00 4.79
238 239 0.392998 CTCATTCACCTTGGGACGGG 60.393 60.000 0.00 0.00 0.00 5.28
239 240 1.378514 CATTCACCTTGGGACGGGG 60.379 63.158 0.00 0.00 0.00 5.73
240 241 2.612493 ATTCACCTTGGGACGGGGG 61.612 63.158 0.00 0.00 0.00 5.40
241 242 4.585216 TCACCTTGGGACGGGGGT 62.585 66.667 0.00 0.00 0.00 4.95
242 243 4.344865 CACCTTGGGACGGGGGTG 62.345 72.222 0.00 0.00 42.29 4.61
243 244 4.912299 ACCTTGGGACGGGGGTGT 62.912 66.667 0.00 0.00 0.00 4.16
244 245 3.576259 CCTTGGGACGGGGGTGTT 61.576 66.667 0.00 0.00 0.00 3.32
245 246 2.282180 CTTGGGACGGGGGTGTTG 60.282 66.667 0.00 0.00 0.00 3.33
246 247 4.589675 TTGGGACGGGGGTGTTGC 62.590 66.667 0.00 0.00 0.00 4.17
256 257 4.955774 GGTGTTGCGGGTCGTCGT 62.956 66.667 0.00 0.00 0.00 4.34
257 258 2.050168 GTGTTGCGGGTCGTCGTA 60.050 61.111 0.00 0.00 0.00 3.43
258 259 1.444895 GTGTTGCGGGTCGTCGTAT 60.445 57.895 0.00 0.00 0.00 3.06
259 260 1.153978 TGTTGCGGGTCGTCGTATC 60.154 57.895 0.00 0.00 0.00 2.24
260 261 1.153978 GTTGCGGGTCGTCGTATCA 60.154 57.895 0.00 0.00 0.00 2.15
261 262 1.138036 TTGCGGGTCGTCGTATCAG 59.862 57.895 0.00 0.00 0.00 2.90
262 263 1.307355 TTGCGGGTCGTCGTATCAGA 61.307 55.000 0.00 0.00 0.00 3.27
263 264 1.099295 TGCGGGTCGTCGTATCAGAT 61.099 55.000 0.00 0.00 0.00 2.90
264 265 0.030369 GCGGGTCGTCGTATCAGATT 59.970 55.000 0.00 0.00 0.00 2.40
265 266 1.925068 GCGGGTCGTCGTATCAGATTC 60.925 57.143 0.00 0.00 0.00 2.52
266 267 1.602851 CGGGTCGTCGTATCAGATTCT 59.397 52.381 0.00 0.00 0.00 2.40
267 268 2.804527 CGGGTCGTCGTATCAGATTCTA 59.195 50.000 0.00 0.00 0.00 2.10
268 269 3.249320 CGGGTCGTCGTATCAGATTCTAA 59.751 47.826 0.00 0.00 0.00 2.10
269 270 4.083431 CGGGTCGTCGTATCAGATTCTAAT 60.083 45.833 0.00 0.00 0.00 1.73
270 271 5.562307 CGGGTCGTCGTATCAGATTCTAATT 60.562 44.000 0.00 0.00 0.00 1.40
271 272 5.629849 GGGTCGTCGTATCAGATTCTAATTG 59.370 44.000 0.00 0.00 0.00 2.32
272 273 5.629849 GGTCGTCGTATCAGATTCTAATTGG 59.370 44.000 0.00 0.00 0.00 3.16
273 274 6.436261 GTCGTCGTATCAGATTCTAATTGGA 58.564 40.000 0.00 0.00 0.00 3.53
274 275 6.360148 GTCGTCGTATCAGATTCTAATTGGAC 59.640 42.308 0.00 0.00 0.00 4.02
275 276 5.339875 CGTCGTATCAGATTCTAATTGGACG 59.660 44.000 11.63 11.63 36.81 4.79
276 277 5.629849 GTCGTATCAGATTCTAATTGGACGG 59.370 44.000 0.00 0.00 0.00 4.79
277 278 5.301045 TCGTATCAGATTCTAATTGGACGGT 59.699 40.000 0.00 0.00 0.00 4.83
278 279 5.629849 CGTATCAGATTCTAATTGGACGGTC 59.370 44.000 0.00 0.00 0.00 4.79
279 280 5.878406 ATCAGATTCTAATTGGACGGTCT 57.122 39.130 8.23 0.00 0.00 3.85
280 281 5.677319 TCAGATTCTAATTGGACGGTCTT 57.323 39.130 8.23 0.00 0.00 3.01
281 282 6.049955 TCAGATTCTAATTGGACGGTCTTT 57.950 37.500 8.23 2.90 0.00 2.52
282 283 5.874810 TCAGATTCTAATTGGACGGTCTTTG 59.125 40.000 8.23 0.00 0.00 2.77
283 284 5.874810 CAGATTCTAATTGGACGGTCTTTGA 59.125 40.000 8.23 0.00 0.00 2.69
284 285 6.036517 CAGATTCTAATTGGACGGTCTTTGAG 59.963 42.308 8.23 0.42 0.00 3.02
285 286 4.202245 TCTAATTGGACGGTCTTTGAGG 57.798 45.455 8.23 0.00 0.00 3.86
286 287 1.534729 AATTGGACGGTCTTTGAGGC 58.465 50.000 8.23 0.00 0.00 4.70
287 288 0.400213 ATTGGACGGTCTTTGAGGCA 59.600 50.000 8.23 0.00 0.00 4.75
288 289 0.250295 TTGGACGGTCTTTGAGGCAG 60.250 55.000 8.23 0.00 0.00 4.85
289 290 1.371558 GGACGGTCTTTGAGGCAGT 59.628 57.895 8.23 0.00 29.06 4.40
290 291 0.670854 GGACGGTCTTTGAGGCAGTC 60.671 60.000 8.23 4.58 42.87 3.51
291 292 1.006102 ACGGTCTTTGAGGCAGTCG 60.006 57.895 0.00 0.00 0.00 4.18
292 293 1.289066 CGGTCTTTGAGGCAGTCGA 59.711 57.895 0.00 0.00 0.00 4.20
293 294 0.108615 CGGTCTTTGAGGCAGTCGAT 60.109 55.000 0.00 0.00 0.00 3.59
294 295 1.363744 GGTCTTTGAGGCAGTCGATG 58.636 55.000 0.00 0.00 0.00 3.84
295 296 1.363744 GTCTTTGAGGCAGTCGATGG 58.636 55.000 0.00 0.00 0.00 3.51
296 297 0.976641 TCTTTGAGGCAGTCGATGGT 59.023 50.000 0.00 0.00 0.00 3.55
297 298 1.066858 TCTTTGAGGCAGTCGATGGTC 60.067 52.381 0.00 0.00 0.00 4.02
298 299 0.389817 TTTGAGGCAGTCGATGGTCG 60.390 55.000 0.00 0.00 42.10 4.79
299 300 2.583593 GAGGCAGTCGATGGTCGC 60.584 66.667 0.00 0.00 40.21 5.19
300 301 3.356639 GAGGCAGTCGATGGTCGCA 62.357 63.158 0.00 0.00 40.21 5.10
301 302 2.434185 GGCAGTCGATGGTCGCAA 60.434 61.111 0.00 0.00 40.21 4.85
302 303 2.740714 GGCAGTCGATGGTCGCAAC 61.741 63.158 0.00 0.00 40.21 4.17
303 304 3.071459 GCAGTCGATGGTCGCAACG 62.071 63.158 0.00 0.00 40.21 4.10
304 305 2.809601 AGTCGATGGTCGCAACGC 60.810 61.111 0.00 0.00 40.21 4.84
305 306 3.849953 GTCGATGGTCGCAACGCC 61.850 66.667 0.00 0.00 40.21 5.68
306 307 4.365505 TCGATGGTCGCAACGCCA 62.366 61.111 5.80 5.80 40.21 5.69
307 308 3.195002 CGATGGTCGCAACGCCAT 61.195 61.111 13.23 13.23 42.72 4.40
308 309 2.709475 GATGGTCGCAACGCCATC 59.291 61.111 19.76 19.76 45.17 3.51
309 310 2.046411 ATGGTCGCAACGCCATCA 60.046 55.556 9.21 0.00 38.58 3.07
310 311 2.108514 ATGGTCGCAACGCCATCAG 61.109 57.895 9.21 0.00 38.58 2.90
311 312 4.166011 GGTCGCAACGCCATCAGC 62.166 66.667 0.00 0.00 38.52 4.26
312 313 3.121030 GTCGCAACGCCATCAGCT 61.121 61.111 0.00 0.00 40.39 4.24
313 314 3.120385 TCGCAACGCCATCAGCTG 61.120 61.111 7.63 7.63 40.39 4.24
314 315 3.120385 CGCAACGCCATCAGCTGA 61.120 61.111 20.79 20.79 40.39 4.26
315 316 2.789917 GCAACGCCATCAGCTGAG 59.210 61.111 22.96 10.62 40.39 3.35
316 317 2.789917 CAACGCCATCAGCTGAGC 59.210 61.111 22.96 19.13 40.39 4.26
317 318 2.816958 AACGCCATCAGCTGAGCG 60.817 61.111 35.15 35.15 44.75 5.03
318 319 3.300934 AACGCCATCAGCTGAGCGA 62.301 57.895 40.18 15.37 43.10 4.93
319 320 2.510012 CGCCATCAGCTGAGCGAA 60.510 61.111 34.34 9.40 43.10 4.70
320 321 2.523507 CGCCATCAGCTGAGCGAAG 61.524 63.158 34.34 17.44 43.10 3.79
343 344 9.943163 GAAGCATTTCTGGTATTTATTCTTCTC 57.057 33.333 0.00 0.00 31.47 2.87
407 411 0.173935 AATGAACACGGCATGGCATG 59.826 50.000 22.99 22.99 30.54 4.06
437 441 7.029563 GTGAGCAACCATATTAGACAAAAAGG 58.970 38.462 0.00 0.00 0.00 3.11
442 449 9.435688 GCAACCATATTAGACAAAAAGGAATTT 57.564 29.630 0.00 0.00 0.00 1.82
455 462 8.550376 ACAAAAAGGAATTTCGAAATCAACATG 58.450 29.630 22.93 16.86 0.00 3.21
462 469 3.057969 TCGAAATCAACATGCAGGACT 57.942 42.857 4.84 0.00 0.00 3.85
517 524 1.451567 TTCCACCACGCCGAAACAA 60.452 52.632 0.00 0.00 0.00 2.83
518 525 1.440938 TTCCACCACGCCGAAACAAG 61.441 55.000 0.00 0.00 0.00 3.16
519 526 2.637025 CACCACGCCGAAACAAGG 59.363 61.111 0.00 0.00 0.00 3.61
527 534 3.250220 CCGAAACAAGGCACAACAC 57.750 52.632 0.00 0.00 0.00 3.32
535 546 1.095228 AAGGCACAACACCACTGACG 61.095 55.000 0.00 0.00 0.00 4.35
556 567 1.647545 CGTGGACCCACACATCATGC 61.648 60.000 18.20 0.00 46.47 4.06
639 650 1.004918 CCGAACCCACCTGTCAGTC 60.005 63.158 0.00 0.00 0.00 3.51
641 652 0.105964 CGAACCCACCTGTCAGTCAA 59.894 55.000 0.00 0.00 0.00 3.18
642 653 1.474320 CGAACCCACCTGTCAGTCAAA 60.474 52.381 0.00 0.00 0.00 2.69
773 784 2.971452 GGCGACGACTTCCTTCCT 59.029 61.111 0.00 0.00 0.00 3.36
774 785 1.153804 GGCGACGACTTCCTTCCTC 60.154 63.158 0.00 0.00 0.00 3.71
775 786 1.153804 GCGACGACTTCCTTCCTCC 60.154 63.158 0.00 0.00 0.00 4.30
776 787 1.511768 CGACGACTTCCTTCCTCCC 59.488 63.158 0.00 0.00 0.00 4.30
956 968 2.204059 AGCTCTTCCTGCTGGGGT 60.204 61.111 10.07 0.00 39.56 4.95
957 969 0.978146 GAGCTCTTCCTGCTGGGGTA 60.978 60.000 6.43 0.00 41.30 3.69
958 970 1.222113 GCTCTTCCTGCTGGGGTAC 59.778 63.158 10.07 0.00 35.33 3.34
1148 1182 0.663568 CTGTTCGCCGTCTTCTTCGT 60.664 55.000 0.00 0.00 0.00 3.85
1253 1287 1.667510 GCGTGGGCCAAATTGGTTG 60.668 57.895 8.40 0.83 40.46 3.77
1307 1341 4.772046 TTATTTTCTCGCGGAAATCTCG 57.228 40.909 18.91 0.00 42.63 4.04
1308 1342 2.074547 TTTTCTCGCGGAAATCTCGT 57.925 45.000 18.91 0.00 42.63 4.18
1309 1343 1.346365 TTTCTCGCGGAAATCTCGTG 58.654 50.000 15.70 0.00 38.81 4.35
1310 1344 0.457853 TTCTCGCGGAAATCTCGTGG 60.458 55.000 6.13 0.00 38.48 4.94
1311 1345 2.508439 TCGCGGAAATCTCGTGGC 60.508 61.111 6.13 0.00 38.48 5.01
1312 1346 2.813474 CGCGGAAATCTCGTGGCA 60.813 61.111 0.00 0.00 34.88 4.92
1313 1347 2.802667 CGCGGAAATCTCGTGGCAG 61.803 63.158 0.00 0.00 34.88 4.85
1314 1348 1.447838 GCGGAAATCTCGTGGCAGA 60.448 57.895 0.00 0.00 0.00 4.26
1315 1349 1.424493 GCGGAAATCTCGTGGCAGAG 61.424 60.000 7.40 7.40 39.52 3.35
1316 1350 0.108615 CGGAAATCTCGTGGCAGAGT 60.109 55.000 11.84 0.00 39.21 3.24
1346 1390 5.979517 GGGATCATTTCGAATGATTTTGACC 59.020 40.000 18.06 14.82 38.73 4.02
1356 1400 5.912396 CGAATGATTTTGACCGAAAGAACAA 59.088 36.000 0.00 0.00 0.00 2.83
1358 1402 7.043722 CGAATGATTTTGACCGAAAGAACAAAA 60.044 33.333 0.00 0.00 43.57 2.44
1360 1404 7.462109 TGATTTTGACCGAAAGAACAAAATG 57.538 32.000 17.25 0.00 45.85 2.32
1368 1412 7.223777 TGACCGAAAGAACAAAATGAAAAATCC 59.776 33.333 0.00 0.00 0.00 3.01
1369 1413 7.044798 ACCGAAAGAACAAAATGAAAAATCCA 58.955 30.769 0.00 0.00 0.00 3.41
1408 1452 3.341857 TTTGTTTGGGTTCGATGTTCG 57.658 42.857 0.00 0.00 42.10 3.95
1487 1532 3.384789 TCTGATTGGAGTCCTACCATTCG 59.615 47.826 11.33 0.00 39.30 3.34
1524 1569 4.800993 AGTTCTTATCACTCGATTCTTGCG 59.199 41.667 0.00 0.00 32.73 4.85
1561 1606 2.873472 TGCCGTTTCTGAATTGTAACGT 59.127 40.909 9.77 0.00 41.11 3.99
1570 1615 4.873827 TCTGAATTGTAACGTTAGCCATCC 59.126 41.667 8.60 0.00 0.00 3.51
1571 1616 4.580868 TGAATTGTAACGTTAGCCATCCA 58.419 39.130 8.60 0.00 0.00 3.41
1572 1617 4.634004 TGAATTGTAACGTTAGCCATCCAG 59.366 41.667 8.60 0.00 0.00 3.86
1573 1618 3.688694 TTGTAACGTTAGCCATCCAGT 57.311 42.857 8.60 0.00 0.00 4.00
1600 1645 1.042229 TCACATGCTGCTGCCTTTTT 58.958 45.000 13.47 0.00 38.71 1.94
1629 1674 4.655762 TCGATCCCAGAATAGAACACAG 57.344 45.455 0.00 0.00 0.00 3.66
1660 1716 3.301906 CGTCGTCACATGAAGAATGACTC 59.698 47.826 0.00 0.00 40.51 3.36
1662 1718 4.325741 GTCGTCACATGAAGAATGACTCTG 59.674 45.833 0.00 0.00 40.51 3.35
1663 1719 3.061831 CGTCACATGAAGAATGACTCTGC 59.938 47.826 0.00 0.00 40.51 4.26
1670 1726 1.018226 AGAATGACTCTGCTGTGCGC 61.018 55.000 0.00 0.00 39.77 6.09
1724 1780 5.886960 ATTTCTTCCTGTGATGTGCTAAC 57.113 39.130 0.00 0.00 0.00 2.34
1777 1833 4.697756 CCGGCCGGTGCTCTTGAA 62.698 66.667 36.64 0.00 37.74 2.69
1870 1926 2.551270 CACCGTTTCAGCGTCTGC 59.449 61.111 2.45 0.00 43.24 4.26
1922 1978 2.608261 CCATCTTCTCGTAATCCTCGGC 60.608 54.545 0.00 0.00 0.00 5.54
1992 2048 2.546494 GCCAACTCAACGCAGCTGT 61.546 57.895 16.64 0.00 0.00 4.40
2552 2608 2.987547 ATGCTGCGCAACCAAGCT 60.988 55.556 13.05 0.00 43.62 3.74
2554 2610 3.663176 GCTGCGCAACCAAGCTCA 61.663 61.111 13.05 0.00 0.00 4.26
3122 3178 2.370189 AGTCTGGGAGGTGTTCAAAGAG 59.630 50.000 0.00 0.00 0.00 2.85
3270 3326 6.208988 TCTGTGAAGTATATGACACTGGTC 57.791 41.667 0.00 0.00 44.57 4.02
3344 3400 0.828677 GGTAGATGGGTAAGCACGGT 59.171 55.000 0.00 0.00 0.00 4.83
3421 3477 9.006215 CGAAAGAAGAAACACGAAATTAAGTTT 57.994 29.630 0.00 0.00 36.94 2.66
3442 3498 1.202891 GGTGGTAGAGTGGGTTTTGCT 60.203 52.381 0.00 0.00 0.00 3.91
3446 3502 3.117663 TGGTAGAGTGGGTTTTGCTCTTT 60.118 43.478 0.00 0.00 39.87 2.52
3484 3540 1.944024 TGTTGTTAGGTTTGCTGTCCG 59.056 47.619 0.00 0.00 0.00 4.79
3595 3656 6.817641 ACTGTTGAAAGAGAGAATGCATAGAG 59.182 38.462 0.00 0.00 0.00 2.43
3596 3657 6.705302 TGTTGAAAGAGAGAATGCATAGAGT 58.295 36.000 0.00 0.00 0.00 3.24
3597 3658 6.592994 TGTTGAAAGAGAGAATGCATAGAGTG 59.407 38.462 0.00 0.00 0.00 3.51
3598 3659 6.535963 TGAAAGAGAGAATGCATAGAGTGA 57.464 37.500 0.00 0.00 0.00 3.41
3599 3660 6.939622 TGAAAGAGAGAATGCATAGAGTGAA 58.060 36.000 0.00 0.00 0.00 3.18
3600 3661 7.040494 TGAAAGAGAGAATGCATAGAGTGAAG 58.960 38.462 0.00 0.00 0.00 3.02
3601 3662 6.543430 AAGAGAGAATGCATAGAGTGAAGT 57.457 37.500 0.00 0.00 0.00 3.01
3602 3663 5.904941 AGAGAGAATGCATAGAGTGAAGTG 58.095 41.667 0.00 0.00 0.00 3.16
3603 3664 4.440880 AGAGAATGCATAGAGTGAAGTGC 58.559 43.478 0.00 0.00 38.05 4.40
3604 3665 4.161942 AGAGAATGCATAGAGTGAAGTGCT 59.838 41.667 0.00 0.00 38.37 4.40
3629 3692 4.000325 ACTTTGTTTCCCTGTGTTTTTGC 59.000 39.130 0.00 0.00 0.00 3.68
3648 3711 2.571653 TGCCTAATCTTACTGTGGCTGT 59.428 45.455 0.00 0.00 40.82 4.40
3664 3727 5.048782 TGTGGCTGTGAGCAACTAAAATTAG 60.049 40.000 4.77 0.00 45.40 1.73
3692 3755 6.894654 TGCTTAATTTGTTCATCCCCAATCTA 59.105 34.615 0.00 0.00 0.00 1.98
3779 3851 9.674068 AGTCCTGAAAGAATATTAGACTTTTCC 57.326 33.333 0.00 0.00 34.07 3.13
3794 3867 3.320826 ACTTTTCCGGGAAAAATGACCTG 59.679 43.478 29.18 19.97 40.34 4.00
3947 4026 6.183309 AGAGAAATCAAATCTAACGCAACC 57.817 37.500 0.00 0.00 0.00 3.77
4019 4098 4.083643 ACTCTCACAATCATTGCGTTCTTG 60.084 41.667 0.00 0.00 0.00 3.02
4192 4316 2.600790 TCTACTCTCCAACGGTTCCAA 58.399 47.619 0.00 0.00 0.00 3.53
4199 4323 1.678627 TCCAACGGTTCCAATTGTGTG 59.321 47.619 4.43 0.00 0.00 3.82
4209 4335 6.148811 CGGTTCCAATTGTGTGTTATTCTACT 59.851 38.462 4.43 0.00 0.00 2.57
4244 4373 6.428083 TCCTATGTTTGTTTACAGGACAGA 57.572 37.500 7.08 3.04 30.91 3.41
4259 4388 4.978083 GGACAGATTCCTCGTAGTTACA 57.022 45.455 0.00 0.00 41.95 2.41
4260 4389 5.320549 GGACAGATTCCTCGTAGTTACAA 57.679 43.478 0.00 0.00 41.95 2.41
4261 4390 5.100943 GGACAGATTCCTCGTAGTTACAAC 58.899 45.833 0.00 0.00 41.95 3.32
4265 4394 7.311408 ACAGATTCCTCGTAGTTACAACTTAC 58.689 38.462 0.00 0.00 40.37 2.34
4299 4428 2.029020 GGAATCAAGCAGACCAAAACCC 60.029 50.000 0.00 0.00 0.00 4.11
4325 4454 0.538118 TGTTTCCTAATCCCGACCCG 59.462 55.000 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.234365 GGCGATCGACGTAGGTCTAC 59.766 60.000 21.57 0.00 44.60 2.59
8 9 1.217585 CGGCGATCGACGTAGGTCTA 61.218 60.000 34.35 3.19 42.51 2.59
9 10 2.532256 CGGCGATCGACGTAGGTCT 61.532 63.158 34.35 0.00 42.51 3.85
31 32 4.742201 CGTCGGTGGCTGGACCTG 62.742 72.222 0.00 0.00 40.22 4.00
48 49 1.081556 TGACCATGCATACGACACGC 61.082 55.000 0.00 0.00 0.00 5.34
49 50 1.522676 GATGACCATGCATACGACACG 59.477 52.381 0.00 0.00 0.00 4.49
50 51 2.285220 GTGATGACCATGCATACGACAC 59.715 50.000 0.00 2.24 0.00 3.67
51 52 2.549926 GTGATGACCATGCATACGACA 58.450 47.619 0.00 0.00 0.00 4.35
52 53 1.867233 GGTGATGACCATGCATACGAC 59.133 52.381 0.00 0.00 42.59 4.34
53 54 2.238942 GGTGATGACCATGCATACGA 57.761 50.000 0.00 0.00 42.59 3.43
63 64 0.811616 GATCCGCAGTGGTGATGACC 60.812 60.000 0.00 0.00 43.48 4.02
64 65 0.811616 GGATCCGCAGTGGTGATGAC 60.812 60.000 0.00 0.00 39.52 3.06
65 66 1.264045 TGGATCCGCAGTGGTGATGA 61.264 55.000 7.39 0.00 39.52 2.92
66 67 0.812811 CTGGATCCGCAGTGGTGATG 60.813 60.000 7.39 0.00 39.52 3.07
67 68 1.524002 CTGGATCCGCAGTGGTGAT 59.476 57.895 7.39 0.00 39.52 3.06
68 69 2.981302 CTGGATCCGCAGTGGTGA 59.019 61.111 7.39 0.00 39.52 4.02
69 70 2.821366 GCTGGATCCGCAGTGGTG 60.821 66.667 19.44 0.19 39.52 4.17
70 71 3.321648 TGCTGGATCCGCAGTGGT 61.322 61.111 22.05 0.00 39.52 4.16
93 94 0.822532 ACATAGCTCCCCGACCTACG 60.823 60.000 0.00 0.00 42.18 3.51
94 95 0.960286 GACATAGCTCCCCGACCTAC 59.040 60.000 0.00 0.00 0.00 3.18
95 96 0.536687 CGACATAGCTCCCCGACCTA 60.537 60.000 0.00 0.00 0.00 3.08
96 97 1.828660 CGACATAGCTCCCCGACCT 60.829 63.158 0.00 0.00 0.00 3.85
97 98 2.728817 CGACATAGCTCCCCGACC 59.271 66.667 0.00 0.00 0.00 4.79
98 99 2.027751 GCGACATAGCTCCCCGAC 59.972 66.667 0.00 0.00 0.00 4.79
99 100 2.441348 TGCGACATAGCTCCCCGA 60.441 61.111 0.00 0.00 38.13 5.14
100 101 2.028190 CTGCGACATAGCTCCCCG 59.972 66.667 0.00 0.00 38.13 5.73
101 102 1.068250 GTCTGCGACATAGCTCCCC 59.932 63.158 0.00 0.00 38.13 4.81
102 103 0.528684 GTGTCTGCGACATAGCTCCC 60.529 60.000 13.12 0.00 44.63 4.30
103 104 0.457851 AGTGTCTGCGACATAGCTCC 59.542 55.000 13.12 1.98 44.63 4.70
104 105 3.304257 CATAGTGTCTGCGACATAGCTC 58.696 50.000 13.12 2.56 44.63 4.09
105 106 2.035193 CCATAGTGTCTGCGACATAGCT 59.965 50.000 13.12 9.12 44.63 3.32
106 107 2.034685 TCCATAGTGTCTGCGACATAGC 59.965 50.000 13.12 3.15 44.63 2.97
107 108 3.990318 TCCATAGTGTCTGCGACATAG 57.010 47.619 13.12 5.60 44.63 2.23
108 109 3.255888 GGATCCATAGTGTCTGCGACATA 59.744 47.826 6.95 8.23 44.63 2.29
109 110 2.036475 GGATCCATAGTGTCTGCGACAT 59.964 50.000 6.95 6.72 44.63 3.06
110 111 1.409064 GGATCCATAGTGTCTGCGACA 59.591 52.381 6.95 7.20 40.50 4.35
111 112 1.409064 TGGATCCATAGTGTCTGCGAC 59.591 52.381 11.44 2.32 0.00 5.19
112 113 1.775385 TGGATCCATAGTGTCTGCGA 58.225 50.000 11.44 0.00 0.00 5.10
113 114 2.205074 GTTGGATCCATAGTGTCTGCG 58.795 52.381 17.06 0.00 0.00 5.18
114 115 2.565841 GGTTGGATCCATAGTGTCTGC 58.434 52.381 17.06 0.00 0.00 4.26
115 116 2.826428 CGGTTGGATCCATAGTGTCTG 58.174 52.381 17.06 3.96 0.00 3.51
116 117 1.139058 GCGGTTGGATCCATAGTGTCT 59.861 52.381 17.06 0.00 0.00 3.41
117 118 1.583054 GCGGTTGGATCCATAGTGTC 58.417 55.000 17.06 2.48 0.00 3.67
118 119 0.179084 CGCGGTTGGATCCATAGTGT 60.179 55.000 17.06 0.00 0.00 3.55
119 120 0.104120 TCGCGGTTGGATCCATAGTG 59.896 55.000 17.06 15.80 0.00 2.74
120 121 0.104304 GTCGCGGTTGGATCCATAGT 59.896 55.000 17.06 0.00 0.00 2.12
121 122 0.600255 GGTCGCGGTTGGATCCATAG 60.600 60.000 17.06 11.06 0.00 2.23
122 123 1.331399 TGGTCGCGGTTGGATCCATA 61.331 55.000 17.06 3.77 0.00 2.74
123 124 2.189521 GGTCGCGGTTGGATCCAT 59.810 61.111 17.06 0.00 0.00 3.41
124 125 3.315140 TGGTCGCGGTTGGATCCA 61.315 61.111 11.44 11.44 0.00 3.41
125 126 2.818274 GTGGTCGCGGTTGGATCC 60.818 66.667 6.13 4.20 0.00 3.36
126 127 2.818274 GGTGGTCGCGGTTGGATC 60.818 66.667 6.13 0.00 0.00 3.36
127 128 3.310860 GAGGTGGTCGCGGTTGGAT 62.311 63.158 6.13 0.00 0.00 3.41
128 129 3.998672 GAGGTGGTCGCGGTTGGA 61.999 66.667 6.13 0.00 0.00 3.53
137 138 3.674050 TAGGGCGAGGGAGGTGGTC 62.674 68.421 0.00 0.00 0.00 4.02
138 139 3.680196 TAGGGCGAGGGAGGTGGT 61.680 66.667 0.00 0.00 0.00 4.16
139 140 2.840102 CTAGGGCGAGGGAGGTGG 60.840 72.222 0.00 0.00 0.00 4.61
140 141 3.541713 GCTAGGGCGAGGGAGGTG 61.542 72.222 0.00 0.00 0.00 4.00
141 142 4.862823 GGCTAGGGCGAGGGAGGT 62.863 72.222 0.00 0.00 39.81 3.85
152 153 4.408821 TGTTGCAGGGCGGCTAGG 62.409 66.667 9.56 0.00 34.04 3.02
153 154 2.821366 CTGTTGCAGGGCGGCTAG 60.821 66.667 9.56 2.54 34.04 3.42
154 155 3.318384 TCTGTTGCAGGGCGGCTA 61.318 61.111 9.56 0.00 34.04 3.93
158 159 4.680237 TCGGTCTGTTGCAGGGCG 62.680 66.667 0.00 0.00 31.51 6.13
159 160 3.050275 GTCGGTCTGTTGCAGGGC 61.050 66.667 0.00 0.00 31.51 5.19
160 161 1.669115 CAGTCGGTCTGTTGCAGGG 60.669 63.158 0.00 0.00 39.17 4.45
161 162 3.957260 CAGTCGGTCTGTTGCAGG 58.043 61.111 0.00 0.00 39.17 4.85
169 170 0.179094 TCAAACGCAACAGTCGGTCT 60.179 50.000 0.00 0.00 0.00 3.85
170 171 0.653636 TTCAAACGCAACAGTCGGTC 59.346 50.000 0.00 0.00 0.00 4.79
171 172 1.063469 CTTTCAAACGCAACAGTCGGT 59.937 47.619 0.00 0.00 0.00 4.69
172 173 1.596954 CCTTTCAAACGCAACAGTCGG 60.597 52.381 0.00 0.00 0.00 4.79
173 174 1.063469 ACCTTTCAAACGCAACAGTCG 59.937 47.619 0.00 0.00 0.00 4.18
174 175 2.844122 ACCTTTCAAACGCAACAGTC 57.156 45.000 0.00 0.00 0.00 3.51
175 176 3.249917 CAAACCTTTCAAACGCAACAGT 58.750 40.909 0.00 0.00 0.00 3.55
176 177 2.029124 GCAAACCTTTCAAACGCAACAG 59.971 45.455 0.00 0.00 0.00 3.16
177 178 1.996191 GCAAACCTTTCAAACGCAACA 59.004 42.857 0.00 0.00 0.00 3.33
178 179 1.996191 TGCAAACCTTTCAAACGCAAC 59.004 42.857 0.00 0.00 0.00 4.17
179 180 2.370281 TGCAAACCTTTCAAACGCAA 57.630 40.000 0.00 0.00 0.00 4.85
180 181 2.159184 TGATGCAAACCTTTCAAACGCA 60.159 40.909 0.00 0.00 0.00 5.24
181 182 2.468831 TGATGCAAACCTTTCAAACGC 58.531 42.857 0.00 0.00 0.00 4.84
182 183 3.490526 CCTTGATGCAAACCTTTCAAACG 59.509 43.478 0.00 0.00 0.00 3.60
183 184 4.692228 TCCTTGATGCAAACCTTTCAAAC 58.308 39.130 0.00 0.00 0.00 2.93
184 185 5.299148 CATCCTTGATGCAAACCTTTCAAA 58.701 37.500 0.00 0.00 33.17 2.69
185 186 4.262549 CCATCCTTGATGCAAACCTTTCAA 60.263 41.667 0.00 0.00 38.59 2.69
186 187 3.258872 CCATCCTTGATGCAAACCTTTCA 59.741 43.478 0.00 0.00 38.59 2.69
187 188 3.259123 ACCATCCTTGATGCAAACCTTTC 59.741 43.478 0.00 0.00 38.59 2.62
188 189 3.007182 CACCATCCTTGATGCAAACCTTT 59.993 43.478 0.00 0.00 38.59 3.11
189 190 2.564062 CACCATCCTTGATGCAAACCTT 59.436 45.455 0.00 0.00 38.59 3.50
190 191 2.173519 CACCATCCTTGATGCAAACCT 58.826 47.619 0.00 0.00 38.59 3.50
191 192 1.895131 ACACCATCCTTGATGCAAACC 59.105 47.619 0.00 0.00 38.59 3.27
192 193 3.319755 CAACACCATCCTTGATGCAAAC 58.680 45.455 0.00 0.00 38.59 2.93
193 194 2.288948 GCAACACCATCCTTGATGCAAA 60.289 45.455 0.00 0.00 38.59 3.68
194 195 1.273048 GCAACACCATCCTTGATGCAA 59.727 47.619 0.00 0.00 38.59 4.08
195 196 0.889994 GCAACACCATCCTTGATGCA 59.110 50.000 0.00 0.00 38.59 3.96
196 197 0.889994 TGCAACACCATCCTTGATGC 59.110 50.000 0.00 0.00 38.59 3.91
197 198 3.319755 GTTTGCAACACCATCCTTGATG 58.680 45.455 0.00 0.00 39.52 3.07
198 199 2.299867 GGTTTGCAACACCATCCTTGAT 59.700 45.455 19.59 0.00 34.04 2.57
199 200 1.686052 GGTTTGCAACACCATCCTTGA 59.314 47.619 19.59 0.00 34.04 3.02
200 201 1.688197 AGGTTTGCAACACCATCCTTG 59.312 47.619 23.75 0.00 36.67 3.61
201 202 1.963515 GAGGTTTGCAACACCATCCTT 59.036 47.619 23.75 9.89 36.67 3.36
202 203 1.133513 TGAGGTTTGCAACACCATCCT 60.134 47.619 23.75 14.31 36.67 3.24
203 204 1.327303 TGAGGTTTGCAACACCATCC 58.673 50.000 23.75 15.90 36.67 3.51
204 205 3.005684 TGAATGAGGTTTGCAACACCATC 59.994 43.478 23.75 19.00 36.67 3.51
205 206 2.964464 TGAATGAGGTTTGCAACACCAT 59.036 40.909 23.75 12.72 36.67 3.55
206 207 2.100584 GTGAATGAGGTTTGCAACACCA 59.899 45.455 23.75 11.31 36.67 4.17
207 208 2.545742 GGTGAATGAGGTTTGCAACACC 60.546 50.000 17.83 17.83 38.51 4.16
208 209 2.362077 AGGTGAATGAGGTTTGCAACAC 59.638 45.455 0.00 0.88 0.00 3.32
209 210 2.665165 AGGTGAATGAGGTTTGCAACA 58.335 42.857 0.00 0.00 0.00 3.33
210 211 3.383761 CAAGGTGAATGAGGTTTGCAAC 58.616 45.455 0.00 0.00 0.00 4.17
211 212 2.364970 CCAAGGTGAATGAGGTTTGCAA 59.635 45.455 0.00 0.00 0.00 4.08
212 213 1.962807 CCAAGGTGAATGAGGTTTGCA 59.037 47.619 0.00 0.00 0.00 4.08
213 214 1.273327 CCCAAGGTGAATGAGGTTTGC 59.727 52.381 0.00 0.00 0.00 3.68
214 215 2.558359 GTCCCAAGGTGAATGAGGTTTG 59.442 50.000 0.00 0.00 0.00 2.93
215 216 2.814097 CGTCCCAAGGTGAATGAGGTTT 60.814 50.000 0.00 0.00 0.00 3.27
216 217 1.271379 CGTCCCAAGGTGAATGAGGTT 60.271 52.381 0.00 0.00 0.00 3.50
217 218 0.324943 CGTCCCAAGGTGAATGAGGT 59.675 55.000 0.00 0.00 0.00 3.85
218 219 0.392998 CCGTCCCAAGGTGAATGAGG 60.393 60.000 0.00 0.00 0.00 3.86
219 220 0.392998 CCCGTCCCAAGGTGAATGAG 60.393 60.000 0.00 0.00 0.00 2.90
220 221 1.682849 CCCGTCCCAAGGTGAATGA 59.317 57.895 0.00 0.00 0.00 2.57
221 222 1.378514 CCCCGTCCCAAGGTGAATG 60.379 63.158 0.00 0.00 0.00 2.67
222 223 2.612493 CCCCCGTCCCAAGGTGAAT 61.612 63.158 0.00 0.00 0.00 2.57
223 224 3.253838 CCCCCGTCCCAAGGTGAA 61.254 66.667 0.00 0.00 0.00 3.18
224 225 4.585216 ACCCCCGTCCCAAGGTGA 62.585 66.667 0.00 0.00 0.00 4.02
225 226 4.344865 CACCCCCGTCCCAAGGTG 62.345 72.222 0.00 0.00 43.50 4.00
226 227 4.912299 ACACCCCCGTCCCAAGGT 62.912 66.667 0.00 0.00 0.00 3.50
227 228 3.576259 AACACCCCCGTCCCAAGG 61.576 66.667 0.00 0.00 0.00 3.61
228 229 2.282180 CAACACCCCCGTCCCAAG 60.282 66.667 0.00 0.00 0.00 3.61
229 230 4.589675 GCAACACCCCCGTCCCAA 62.590 66.667 0.00 0.00 0.00 4.12
239 240 2.824071 ATACGACGACCCGCAACACC 62.824 60.000 0.00 0.00 0.00 4.16
240 241 1.408474 GATACGACGACCCGCAACAC 61.408 60.000 0.00 0.00 0.00 3.32
241 242 1.153978 GATACGACGACCCGCAACA 60.154 57.895 0.00 0.00 0.00 3.33
242 243 1.138047 CTGATACGACGACCCGCAAC 61.138 60.000 0.00 0.00 0.00 4.17
243 244 1.138036 CTGATACGACGACCCGCAA 59.862 57.895 0.00 0.00 0.00 4.85
244 245 1.099295 ATCTGATACGACGACCCGCA 61.099 55.000 0.00 0.00 0.00 5.69
245 246 0.030369 AATCTGATACGACGACCCGC 59.970 55.000 0.00 0.00 0.00 6.13
246 247 1.602851 AGAATCTGATACGACGACCCG 59.397 52.381 0.00 0.00 0.00 5.28
247 248 4.825546 TTAGAATCTGATACGACGACCC 57.174 45.455 0.00 0.00 0.00 4.46
248 249 5.629849 CCAATTAGAATCTGATACGACGACC 59.370 44.000 0.00 0.00 0.00 4.79
249 250 6.360148 GTCCAATTAGAATCTGATACGACGAC 59.640 42.308 0.00 0.00 0.00 4.34
250 251 6.436261 GTCCAATTAGAATCTGATACGACGA 58.564 40.000 0.00 0.00 0.00 4.20
251 252 5.339875 CGTCCAATTAGAATCTGATACGACG 59.660 44.000 16.41 16.41 31.00 5.12
252 253 5.629849 CCGTCCAATTAGAATCTGATACGAC 59.370 44.000 9.45 7.14 0.00 4.34
253 254 5.301045 ACCGTCCAATTAGAATCTGATACGA 59.699 40.000 9.45 0.00 0.00 3.43
254 255 5.529791 ACCGTCCAATTAGAATCTGATACG 58.470 41.667 0.00 0.00 0.00 3.06
255 256 6.750148 AGACCGTCCAATTAGAATCTGATAC 58.250 40.000 0.00 0.00 0.00 2.24
256 257 6.978674 AGACCGTCCAATTAGAATCTGATA 57.021 37.500 0.00 0.00 0.00 2.15
257 258 5.878406 AGACCGTCCAATTAGAATCTGAT 57.122 39.130 0.00 0.00 0.00 2.90
258 259 5.677319 AAGACCGTCCAATTAGAATCTGA 57.323 39.130 0.00 0.00 0.00 3.27
259 260 5.874810 TCAAAGACCGTCCAATTAGAATCTG 59.125 40.000 0.00 0.00 0.00 2.90
260 261 6.049955 TCAAAGACCGTCCAATTAGAATCT 57.950 37.500 0.00 0.00 0.00 2.40
261 262 5.294552 CCTCAAAGACCGTCCAATTAGAATC 59.705 44.000 0.00 0.00 0.00 2.52
262 263 5.186198 CCTCAAAGACCGTCCAATTAGAAT 58.814 41.667 0.00 0.00 0.00 2.40
263 264 4.575885 CCTCAAAGACCGTCCAATTAGAA 58.424 43.478 0.00 0.00 0.00 2.10
264 265 3.618997 GCCTCAAAGACCGTCCAATTAGA 60.619 47.826 0.00 0.00 0.00 2.10
265 266 2.678336 GCCTCAAAGACCGTCCAATTAG 59.322 50.000 0.00 0.00 0.00 1.73
266 267 2.039216 TGCCTCAAAGACCGTCCAATTA 59.961 45.455 0.00 0.00 0.00 1.40
267 268 1.202879 TGCCTCAAAGACCGTCCAATT 60.203 47.619 0.00 0.00 0.00 2.32
268 269 0.400213 TGCCTCAAAGACCGTCCAAT 59.600 50.000 0.00 0.00 0.00 3.16
269 270 0.250295 CTGCCTCAAAGACCGTCCAA 60.250 55.000 0.00 0.00 0.00 3.53
270 271 1.371183 CTGCCTCAAAGACCGTCCA 59.629 57.895 0.00 0.00 0.00 4.02
271 272 0.670854 GACTGCCTCAAAGACCGTCC 60.671 60.000 0.00 0.00 0.00 4.79
272 273 1.009389 CGACTGCCTCAAAGACCGTC 61.009 60.000 0.00 0.00 0.00 4.79
273 274 1.006102 CGACTGCCTCAAAGACCGT 60.006 57.895 0.00 0.00 0.00 4.83
274 275 0.108615 ATCGACTGCCTCAAAGACCG 60.109 55.000 0.00 0.00 0.00 4.79
275 276 1.363744 CATCGACTGCCTCAAAGACC 58.636 55.000 0.00 0.00 0.00 3.85
276 277 1.338200 ACCATCGACTGCCTCAAAGAC 60.338 52.381 0.00 0.00 0.00 3.01
277 278 0.976641 ACCATCGACTGCCTCAAAGA 59.023 50.000 0.00 0.00 0.00 2.52
278 279 1.363744 GACCATCGACTGCCTCAAAG 58.636 55.000 0.00 0.00 0.00 2.77
279 280 0.389817 CGACCATCGACTGCCTCAAA 60.390 55.000 0.00 0.00 43.74 2.69
280 281 1.215382 CGACCATCGACTGCCTCAA 59.785 57.895 0.00 0.00 43.74 3.02
281 282 2.885113 CGACCATCGACTGCCTCA 59.115 61.111 0.00 0.00 43.74 3.86
282 283 2.583593 GCGACCATCGACTGCCTC 60.584 66.667 1.69 0.00 43.74 4.70
283 284 2.942796 TTGCGACCATCGACTGCCT 61.943 57.895 1.69 0.00 43.74 4.75
284 285 2.434185 TTGCGACCATCGACTGCC 60.434 61.111 1.69 0.00 43.74 4.85
285 286 2.778679 GTTGCGACCATCGACTGC 59.221 61.111 1.69 0.00 43.74 4.40
286 287 3.071459 GCGTTGCGACCATCGACTG 62.071 63.158 1.69 0.00 43.74 3.51
287 288 2.809601 GCGTTGCGACCATCGACT 60.810 61.111 1.69 0.00 43.74 4.18
288 289 3.849953 GGCGTTGCGACCATCGAC 61.850 66.667 1.69 0.00 43.74 4.20
289 290 3.657448 ATGGCGTTGCGACCATCGA 62.657 57.895 1.69 0.00 43.74 3.59
290 291 3.155470 GATGGCGTTGCGACCATCG 62.155 63.158 20.08 3.77 43.89 3.84
291 292 2.709475 GATGGCGTTGCGACCATC 59.291 61.111 20.08 20.08 45.17 3.51
292 293 2.046411 TGATGGCGTTGCGACCAT 60.046 55.556 13.96 13.96 42.72 3.55
293 294 2.741985 CTGATGGCGTTGCGACCA 60.742 61.111 0.00 7.02 37.42 4.02
294 295 4.166011 GCTGATGGCGTTGCGACC 62.166 66.667 0.00 0.00 31.60 4.79
303 304 2.821688 GCTTCGCTCAGCTGATGGC 61.822 63.158 18.63 17.10 36.79 4.40
304 305 0.814410 ATGCTTCGCTCAGCTGATGG 60.814 55.000 18.63 12.22 40.79 3.51
305 306 1.015109 AATGCTTCGCTCAGCTGATG 58.985 50.000 18.63 13.20 40.79 3.07
306 307 1.669779 GAAATGCTTCGCTCAGCTGAT 59.330 47.619 18.63 0.00 40.79 2.90
307 308 1.081892 GAAATGCTTCGCTCAGCTGA 58.918 50.000 17.19 17.19 40.79 4.26
308 309 1.085091 AGAAATGCTTCGCTCAGCTG 58.915 50.000 7.63 7.63 40.79 4.24
309 310 1.085091 CAGAAATGCTTCGCTCAGCT 58.915 50.000 0.00 0.00 40.79 4.24
310 311 0.098376 CCAGAAATGCTTCGCTCAGC 59.902 55.000 0.00 0.00 40.55 4.26
311 312 1.446907 ACCAGAAATGCTTCGCTCAG 58.553 50.000 0.00 0.00 36.61 3.35
312 313 2.760634 TACCAGAAATGCTTCGCTCA 57.239 45.000 0.00 0.00 36.61 4.26
313 314 4.622701 AAATACCAGAAATGCTTCGCTC 57.377 40.909 0.00 0.00 36.61 5.03
314 315 6.543831 AGAATAAATACCAGAAATGCTTCGCT 59.456 34.615 0.00 0.00 36.61 4.93
315 316 6.729187 AGAATAAATACCAGAAATGCTTCGC 58.271 36.000 0.00 0.00 36.61 4.70
316 317 8.616076 AGAAGAATAAATACCAGAAATGCTTCG 58.384 33.333 0.00 0.00 36.61 3.79
317 318 9.943163 GAGAAGAATAAATACCAGAAATGCTTC 57.057 33.333 0.00 0.00 0.00 3.86
318 319 8.907885 GGAGAAGAATAAATACCAGAAATGCTT 58.092 33.333 0.00 0.00 0.00 3.91
319 320 7.503902 GGGAGAAGAATAAATACCAGAAATGCT 59.496 37.037 0.00 0.00 0.00 3.79
320 321 7.255625 GGGGAGAAGAATAAATACCAGAAATGC 60.256 40.741 0.00 0.00 0.00 3.56
321 322 7.231519 GGGGGAGAAGAATAAATACCAGAAATG 59.768 40.741 0.00 0.00 0.00 2.32
322 323 7.298374 GGGGGAGAAGAATAAATACCAGAAAT 58.702 38.462 0.00 0.00 0.00 2.17
323 324 6.669631 GGGGGAGAAGAATAAATACCAGAAA 58.330 40.000 0.00 0.00 0.00 2.52
324 325 6.262056 GGGGGAGAAGAATAAATACCAGAA 57.738 41.667 0.00 0.00 0.00 3.02
325 326 5.906772 GGGGGAGAAGAATAAATACCAGA 57.093 43.478 0.00 0.00 0.00 3.86
378 382 3.181461 TGCCGTGTTCATTTGGGAATTTT 60.181 39.130 0.00 0.00 0.00 1.82
426 430 9.458374 GTTGATTTCGAAATTCCTTTTTGTCTA 57.542 29.630 23.49 3.26 31.56 2.59
428 432 8.125728 TGTTGATTTCGAAATTCCTTTTTGTC 57.874 30.769 23.49 9.02 31.56 3.18
433 437 6.222389 TGCATGTTGATTTCGAAATTCCTTT 58.778 32.000 23.49 1.73 0.00 3.11
436 440 4.563976 CCTGCATGTTGATTTCGAAATTCC 59.436 41.667 23.49 12.86 0.00 3.01
437 441 5.287035 GTCCTGCATGTTGATTTCGAAATTC 59.713 40.000 23.49 16.39 0.00 2.17
442 449 2.743664 CAGTCCTGCATGTTGATTTCGA 59.256 45.455 0.00 0.00 0.00 3.71
449 456 2.292267 GGTATCCAGTCCTGCATGTTG 58.708 52.381 0.00 0.00 0.00 3.33
511 518 1.476488 AGTGGTGTTGTGCCTTGTTTC 59.524 47.619 0.00 0.00 0.00 2.78
517 524 1.523711 CGTCAGTGGTGTTGTGCCT 60.524 57.895 0.00 0.00 0.00 4.75
518 525 2.542907 CCGTCAGTGGTGTTGTGCC 61.543 63.158 0.00 0.00 0.00 5.01
519 526 3.022287 CCGTCAGTGGTGTTGTGC 58.978 61.111 0.00 0.00 0.00 4.57
521 528 2.587753 CGCCGTCAGTGGTGTTGT 60.588 61.111 0.00 0.00 34.75 3.32
556 567 2.094100 TAGCTCTGGAGGGGAATGAG 57.906 55.000 0.00 0.00 0.00 2.90
639 650 3.646715 TGAGGGGCGGGACCTTTG 61.647 66.667 0.00 0.00 38.79 2.77
641 652 4.974438 TGTGAGGGGCGGGACCTT 62.974 66.667 0.00 0.00 38.79 3.50
697 708 2.741092 GACGTGTGGGCCAGAAGA 59.259 61.111 22.70 0.00 0.00 2.87
698 709 2.738521 CGACGTGTGGGCCAGAAG 60.739 66.667 14.87 14.87 0.00 2.85
699 710 4.308458 CCGACGTGTGGGCCAGAA 62.308 66.667 6.40 0.00 0.00 3.02
899 911 2.892425 GAGAGGCCGCACCATTCG 60.892 66.667 9.88 0.00 43.14 3.34
956 968 0.675837 CCGTCGACTCCTCACCAGTA 60.676 60.000 14.70 0.00 0.00 2.74
957 969 1.972223 CCGTCGACTCCTCACCAGT 60.972 63.158 14.70 0.00 0.00 4.00
958 970 1.674651 TCCGTCGACTCCTCACCAG 60.675 63.158 14.70 0.00 0.00 4.00
999 1027 1.078759 CCTTCGCCGATATCGCCATC 61.079 60.000 19.78 7.14 38.18 3.51
1014 1042 2.748843 GCTCAGCTTGCGCTCCTTC 61.749 63.158 9.73 0.00 45.15 3.46
1140 1174 1.063806 CGCAGAGGAACACGAAGAAG 58.936 55.000 0.00 0.00 0.00 2.85
1253 1287 5.790096 ACTATCCTACCTAGTACCTAGACCC 59.210 48.000 0.00 0.00 36.26 4.46
1256 1290 6.637968 TCCACTATCCTACCTAGTACCTAGA 58.362 44.000 0.00 0.00 36.26 2.43
1257 1291 6.949117 TCCACTATCCTACCTAGTACCTAG 57.051 45.833 0.00 0.00 34.16 3.02
1259 1293 6.800223 ATTCCACTATCCTACCTAGTACCT 57.200 41.667 0.00 0.00 0.00 3.08
1260 1294 9.544579 AATAATTCCACTATCCTACCTAGTACC 57.455 37.037 0.00 0.00 0.00 3.34
1296 1330 1.424493 CTCTGCCACGAGATTTCCGC 61.424 60.000 0.00 0.00 32.74 5.54
1307 1341 2.129555 ATCCCACCACACTCTGCCAC 62.130 60.000 0.00 0.00 0.00 5.01
1308 1342 1.841302 GATCCCACCACACTCTGCCA 61.841 60.000 0.00 0.00 0.00 4.92
1309 1343 1.078143 GATCCCACCACACTCTGCC 60.078 63.158 0.00 0.00 0.00 4.85
1310 1344 0.254178 ATGATCCCACCACACTCTGC 59.746 55.000 0.00 0.00 0.00 4.26
1311 1345 2.795231 AATGATCCCACCACACTCTG 57.205 50.000 0.00 0.00 0.00 3.35
1312 1346 2.355108 CGAAATGATCCCACCACACTCT 60.355 50.000 0.00 0.00 0.00 3.24
1313 1347 2.009774 CGAAATGATCCCACCACACTC 58.990 52.381 0.00 0.00 0.00 3.51
1314 1348 1.628340 TCGAAATGATCCCACCACACT 59.372 47.619 0.00 0.00 0.00 3.55
1315 1349 2.107950 TCGAAATGATCCCACCACAC 57.892 50.000 0.00 0.00 0.00 3.82
1316 1350 2.869101 TTCGAAATGATCCCACCACA 57.131 45.000 0.00 0.00 0.00 4.17
1346 1390 9.934190 AAATGGATTTTTCATTTTGTTCTTTCG 57.066 25.926 0.00 0.00 40.62 3.46
1408 1452 5.175859 TCTATTTTTCACCATCCAGACGAC 58.824 41.667 0.00 0.00 0.00 4.34
1487 1532 2.438868 AGAACTGCAATTTTTCCCGC 57.561 45.000 0.00 0.00 0.00 6.13
1524 1569 1.457303 CGGCAAGCTGCTATAATCGAC 59.543 52.381 0.90 0.00 44.28 4.20
1561 1606 2.497675 GACTGACTGACTGGATGGCTAA 59.502 50.000 0.00 0.00 0.00 3.09
1570 1615 2.067013 CAGCATGTGACTGACTGACTG 58.933 52.381 0.00 0.00 37.32 3.51
1571 1616 1.607509 GCAGCATGTGACTGACTGACT 60.608 52.381 3.29 0.00 39.31 3.41
1572 1617 0.795085 GCAGCATGTGACTGACTGAC 59.205 55.000 3.29 0.00 39.31 3.51
1573 1618 0.683412 AGCAGCATGTGACTGACTGA 59.317 50.000 0.00 0.00 39.31 3.41
1600 1645 5.140454 TCTATTCTGGGATCGATCAGTCAA 58.860 41.667 25.93 13.35 33.13 3.18
1601 1646 4.729868 TCTATTCTGGGATCGATCAGTCA 58.270 43.478 25.93 18.29 33.13 3.41
1609 1654 4.655762 TCTGTGTTCTATTCTGGGATCG 57.344 45.455 0.00 0.00 0.00 3.69
1629 1674 0.458543 ATGTGACGACGTGAGGCATC 60.459 55.000 4.58 0.00 41.50 3.91
1663 1719 1.721487 CCTAAATTCGGGCGCACAG 59.279 57.895 11.77 2.11 0.00 3.66
1670 1726 1.658994 TTAGCGTGCCTAAATTCGGG 58.341 50.000 0.00 0.00 33.18 5.14
1724 1780 4.111198 CCATCACAAGAAGACGAGATCAG 58.889 47.826 0.00 0.00 0.00 2.90
1870 1926 2.008268 GACAGCATGCCGGATTTGGG 62.008 60.000 15.66 0.00 42.53 4.12
1922 1978 1.769098 CTGGCAGCAATGATCCGTCG 61.769 60.000 0.00 0.00 0.00 5.12
1964 2020 2.417719 GTTGAGTTGGCAGTGGAGTAG 58.582 52.381 0.00 0.00 0.00 2.57
1992 2048 1.674651 CTGAGAGGGGACGACGACA 60.675 63.158 0.00 0.00 0.00 4.35
2552 2608 0.690192 TCCATTCCCGCAAGAACTGA 59.310 50.000 0.00 0.00 43.02 3.41
2554 2610 1.281867 TGATCCATTCCCGCAAGAACT 59.718 47.619 0.00 0.00 43.02 3.01
2670 2726 1.804151 GTGGCGTGTCACATTGTATGT 59.196 47.619 3.42 0.00 46.22 2.29
2972 3028 2.029623 GCATCTGGCCTGACAATTGAT 58.970 47.619 15.36 0.00 36.11 2.57
3026 3082 3.851976 TCATCCCTTCCTTCAGATGGAAA 59.148 43.478 16.60 5.15 42.29 3.13
3227 3283 1.299648 CCGACTTGGCCAATCCTCA 59.700 57.895 20.85 0.00 35.26 3.86
3270 3326 6.890663 TTCTTTGTGCACAAAATCTTTCAG 57.109 33.333 36.72 25.59 44.24 3.02
3344 3400 3.500299 CCGTGTGTTGTGTGGATCAAATA 59.500 43.478 0.00 0.00 0.00 1.40
3421 3477 1.477923 GCAAAACCCACTCTACCACCA 60.478 52.381 0.00 0.00 0.00 4.17
3595 3656 4.105486 GGAAACAAAGTCAAGCACTTCAC 58.895 43.478 0.00 0.00 45.32 3.18
3596 3657 3.130340 GGGAAACAAAGTCAAGCACTTCA 59.870 43.478 0.00 0.00 45.32 3.02
3597 3658 3.381590 AGGGAAACAAAGTCAAGCACTTC 59.618 43.478 0.00 0.00 45.32 3.01
3599 3660 2.689983 CAGGGAAACAAAGTCAAGCACT 59.310 45.455 0.00 0.00 36.64 4.40
3600 3661 2.427095 ACAGGGAAACAAAGTCAAGCAC 59.573 45.455 0.00 0.00 0.00 4.40
3601 3662 2.426738 CACAGGGAAACAAAGTCAAGCA 59.573 45.455 0.00 0.00 0.00 3.91
3602 3663 2.427095 ACACAGGGAAACAAAGTCAAGC 59.573 45.455 0.00 0.00 0.00 4.01
3603 3664 4.718940 AACACAGGGAAACAAAGTCAAG 57.281 40.909 0.00 0.00 0.00 3.02
3604 3665 5.476091 AAAACACAGGGAAACAAAGTCAA 57.524 34.783 0.00 0.00 0.00 3.18
3629 3692 4.437239 CTCACAGCCACAGTAAGATTAGG 58.563 47.826 0.00 0.00 0.00 2.69
3648 3711 8.615878 TTAAGCACTCTAATTTTAGTTGCTCA 57.384 30.769 19.88 10.35 43.63 4.26
3664 3727 4.462483 TGGGGATGAACAAATTAAGCACTC 59.538 41.667 0.00 0.00 0.00 3.51
3692 3755 4.562394 CCATAACGAATTTGCGCAGATTTT 59.438 37.500 24.94 18.51 33.86 1.82
3779 3851 0.243636 GGCACAGGTCATTTTTCCCG 59.756 55.000 0.00 0.00 0.00 5.14
3863 3939 0.250989 TTCCCAAAGCAACTACGGGG 60.251 55.000 0.00 0.00 37.51 5.73
3947 4026 3.129109 CAGTGATCTTGATGTGGATCCG 58.871 50.000 7.39 0.00 37.96 4.18
3989 4068 4.634883 GCAATGATTGTGAGAGTGATCTGT 59.365 41.667 7.05 0.00 0.00 3.41
4019 4098 6.655003 TGAAACCTCAGTAATGAAAGATGGAC 59.345 38.462 2.78 0.00 0.00 4.02
4106 4204 4.224147 AGAGGAAAAGAAGCCTAGGTCTTC 59.776 45.833 26.06 26.06 40.04 2.87
4221 4347 6.428083 TCTGTCCTGTAAACAAACATAGGA 57.572 37.500 0.00 0.00 0.00 2.94
4244 4373 7.664758 ACTTGTAAGTTGTAACTACGAGGAAT 58.335 34.615 16.82 0.00 38.57 3.01
4251 4380 7.912383 TGCTTTGACTTGTAAGTTGTAACTAC 58.088 34.615 0.00 0.00 39.88 2.73
4255 4384 6.600032 TCCTTGCTTTGACTTGTAAGTTGTAA 59.400 34.615 0.00 0.00 39.88 2.41
4256 4385 6.116806 TCCTTGCTTTGACTTGTAAGTTGTA 58.883 36.000 0.00 0.00 39.88 2.41
4257 4386 4.947388 TCCTTGCTTTGACTTGTAAGTTGT 59.053 37.500 0.00 0.00 39.88 3.32
4258 4387 5.499139 TCCTTGCTTTGACTTGTAAGTTG 57.501 39.130 0.00 0.00 39.88 3.16
4259 4388 6.321181 TGATTCCTTGCTTTGACTTGTAAGTT 59.679 34.615 0.00 0.00 39.88 2.66
4260 4389 5.827797 TGATTCCTTGCTTTGACTTGTAAGT 59.172 36.000 0.00 0.00 43.16 2.24
4261 4390 6.317789 TGATTCCTTGCTTTGACTTGTAAG 57.682 37.500 0.00 0.00 0.00 2.34
4265 4394 3.985925 GCTTGATTCCTTGCTTTGACTTG 59.014 43.478 0.00 0.00 0.00 3.16
4299 4428 5.106277 GGTCGGGATTAGGAAACAGAAAAAG 60.106 44.000 0.00 0.00 0.00 2.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.