Multiple sequence alignment - TraesCS7A01G312900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G312900 chr7A 100.000 8853 0 0 1 8853 444436477 444427625 0.000000e+00 16349.0
1 TraesCS7A01G312900 chr7A 93.497 815 51 2 8037 8851 444380003 444379191 0.000000e+00 1210.0
2 TraesCS7A01G312900 chr7A 91.896 617 44 4 1 612 33004996 33004381 0.000000e+00 857.0
3 TraesCS7A01G312900 chr7A 93.195 338 23 0 1198 1535 643994616 643994279 1.720000e-136 497.0
4 TraesCS7A01G312900 chr7A 89.222 334 33 3 8519 8851 129671993 129671662 1.780000e-111 414.0
5 TraesCS7A01G312900 chr7A 84.742 426 50 13 8037 8456 197274300 197273884 6.400000e-111 412.0
6 TraesCS7A01G312900 chr7A 82.378 471 69 11 8037 8501 338698536 338698998 1.790000e-106 398.0
7 TraesCS7A01G312900 chr7A 82.725 411 60 10 8037 8443 262908064 262908467 1.090000e-93 355.0
8 TraesCS7A01G312900 chr7B 86.741 2602 227 59 3866 6412 388897896 388895358 0.000000e+00 2785.0
9 TraesCS7A01G312900 chr7B 92.515 1630 72 26 2309 3905 388899675 388898063 0.000000e+00 2289.0
10 TraesCS7A01G312900 chr7B 94.410 805 30 4 7212 8006 388815446 388814647 0.000000e+00 1223.0
11 TraesCS7A01G312900 chr7B 94.286 805 31 4 7212 8006 388843583 388842784 0.000000e+00 1218.0
12 TraesCS7A01G312900 chr7B 94.286 805 31 4 7212 8006 388857508 388856709 0.000000e+00 1218.0
13 TraesCS7A01G312900 chr7B 94.286 805 31 4 7212 8006 388872105 388871306 0.000000e+00 1218.0
14 TraesCS7A01G312900 chr7B 95.306 767 30 2 7241 8006 388809029 388808268 0.000000e+00 1212.0
15 TraesCS7A01G312900 chr7B 94.037 805 33 4 7212 8006 388829451 388828652 0.000000e+00 1206.0
16 TraesCS7A01G312900 chr7B 95.922 515 20 1 6698 7212 388880647 388880134 0.000000e+00 833.0
17 TraesCS7A01G312900 chr7B 94.318 528 14 5 674 1196 388901435 388900919 0.000000e+00 795.0
18 TraesCS7A01G312900 chr7B 88.750 480 23 13 1536 1984 388900926 388900447 7.760000e-155 558.0
19 TraesCS7A01G312900 chr7B 91.718 326 21 3 1986 2308 388900181 388899859 1.750000e-121 448.0
20 TraesCS7A01G312900 chr7B 89.109 101 7 4 2956 3054 388898915 388899013 1.210000e-23 122.0
21 TraesCS7A01G312900 chr7B 91.250 80 4 2 2814 2890 388898660 388898581 1.220000e-18 106.0
22 TraesCS7A01G312900 chr7B 89.552 67 5 2 2969 3034 553633204 553633269 5.700000e-12 84.2
23 TraesCS7A01G312900 chr7B 94.737 38 2 0 7998 8035 607636028 607636065 9.600000e-05 60.2
24 TraesCS7A01G312900 chr7D 88.377 2280 183 40 3866 6103 392642066 392639827 0.000000e+00 2667.0
25 TraesCS7A01G312900 chr7D 93.532 1608 61 17 6410 7998 392635051 392633468 0.000000e+00 2353.0
26 TraesCS7A01G312900 chr7D 94.152 1197 45 10 2783 3962 392643226 392642038 0.000000e+00 1799.0
27 TraesCS7A01G312900 chr7D 89.937 795 50 15 2001 2776 392644121 392643338 0.000000e+00 998.0
28 TraesCS7A01G312900 chr7D 97.278 551 15 0 646 1196 392645192 392644642 0.000000e+00 935.0
29 TraesCS7A01G312900 chr7D 88.978 499 17 5 1556 2016 392644638 392644140 4.610000e-162 582.0
30 TraesCS7A01G312900 chr7D 91.558 308 25 1 6105 6412 392638101 392637795 2.950000e-114 424.0
31 TraesCS7A01G312900 chr7D 85.475 179 23 2 5628 5805 552971875 552971699 5.460000e-42 183.0
32 TraesCS7A01G312900 chr7D 78.755 273 52 5 5488 5759 125913134 125912867 2.540000e-40 178.0
33 TraesCS7A01G312900 chr7D 78.022 273 55 4 5488 5759 125993418 125993150 5.500000e-37 167.0
34 TraesCS7A01G312900 chr7D 89.744 78 6 2 2814 2890 392642703 392642627 2.030000e-16 99.0
35 TraesCS7A01G312900 chr3A 81.175 1583 196 56 4854 6405 427768172 427769683 0.000000e+00 1179.0
36 TraesCS7A01G312900 chr3A 78.338 1011 159 32 5405 6402 581619433 581620396 4.570000e-167 599.0
37 TraesCS7A01G312900 chr3A 92.383 407 31 0 8037 8443 396593404 396592998 1.660000e-161 580.0
38 TraesCS7A01G312900 chr3A 87.558 434 43 9 8037 8465 464592566 464592139 7.990000e-135 492.0
39 TraesCS7A01G312900 chr3A 88.704 301 30 3 8551 8850 422482524 422482227 1.820000e-96 364.0
40 TraesCS7A01G312900 chr3A 87.302 315 32 6 8537 8850 736968687 736968380 3.930000e-93 353.0
41 TraesCS7A01G312900 chr3D 80.189 1590 208 52 4857 6405 308272165 308273688 0.000000e+00 1092.0
42 TraesCS7A01G312900 chr3D 91.200 625 49 4 1 622 531259644 531259023 0.000000e+00 845.0
43 TraesCS7A01G312900 chr3D 80.000 260 41 9 5505 5759 49016599 49016852 1.960000e-41 182.0
44 TraesCS7A01G312900 chr3D 97.727 44 0 1 2983 3026 603169533 603169491 3.430000e-09 75.0
45 TraesCS7A01G312900 chr3B 79.046 1594 213 58 4853 6405 413034705 413033192 0.000000e+00 981.0
46 TraesCS7A01G312900 chr3B 91.573 356 28 2 1185 1539 279509902 279509548 2.870000e-134 490.0
47 TraesCS7A01G312900 chr6D 92.110 621 44 3 1 619 116853995 116854612 0.000000e+00 870.0
48 TraesCS7A01G312900 chr6D 90.909 44 3 1 7992 8035 459756547 459756589 3.450000e-04 58.4
49 TraesCS7A01G312900 chr5A 92.295 610 43 4 1 606 211614302 211614911 0.000000e+00 863.0
50 TraesCS7A01G312900 chr5A 90.997 622 53 3 1 619 461268698 461269319 0.000000e+00 835.0
51 TraesCS7A01G312900 chr5A 75.514 1507 310 38 4909 6386 90258427 90259903 0.000000e+00 684.0
52 TraesCS7A01G312900 chr5A 92.151 344 27 0 1192 1535 626963577 626963920 3.720000e-133 486.0
53 TraesCS7A01G312900 chr5A 88.073 327 32 6 8525 8849 270632791 270632470 1.800000e-101 381.0
54 TraesCS7A01G312900 chr5D 91.506 624 46 5 1 619 510832049 510832670 0.000000e+00 852.0
55 TraesCS7A01G312900 chr5D 76.645 1520 287 46 4898 6385 95297813 95299296 0.000000e+00 778.0
56 TraesCS7A01G312900 chr5D 81.259 699 100 21 5323 6003 540276570 540275885 3.640000e-148 536.0
57 TraesCS7A01G312900 chr5D 92.157 357 27 1 1188 1544 103246342 103245987 3.690000e-138 503.0
58 TraesCS7A01G312900 chr5D 77.991 468 75 16 5242 5694 369342661 369342207 1.470000e-67 268.0
59 TraesCS7A01G312900 chr5D 79.577 284 49 8 3757 4035 512546217 512546496 2.520000e-45 195.0
60 TraesCS7A01G312900 chr5D 83.636 165 22 2 3869 4033 528988044 528987885 5.540000e-32 150.0
61 TraesCS7A01G312900 chr6A 91.186 624 49 4 1 618 99769219 99768596 0.000000e+00 843.0
62 TraesCS7A01G312900 chr6A 81.509 411 65 10 8037 8443 221617714 221618117 2.380000e-85 327.0
63 TraesCS7A01G312900 chr6A 100.000 33 0 0 8001 8033 36272343 36272375 2.670000e-05 62.1
64 TraesCS7A01G312900 chr6A 97.059 34 1 0 8001 8034 431046694 431046661 3.450000e-04 58.4
65 TraesCS7A01G312900 chr6A 96.774 31 1 0 2965 2995 78255225 78255255 1.600000e-02 52.8
66 TraesCS7A01G312900 chr2D 91.545 615 47 5 1 612 358094066 358093454 0.000000e+00 843.0
67 TraesCS7A01G312900 chr2D 91.776 608 42 3 1 606 557797249 557797850 0.000000e+00 839.0
68 TraesCS7A01G312900 chr2D 78.983 295 53 6 3866 4157 76651090 76650802 9.070000e-45 193.0
69 TraesCS7A01G312900 chr5B 78.872 975 170 26 5139 6089 391645453 391646415 2.100000e-175 627.0
70 TraesCS7A01G312900 chr5B 79.762 84 8 5 2968 3042 176590547 176590630 1.600000e-02 52.8
71 TraesCS7A01G312900 chr2A 80.000 825 116 40 8037 8851 236848534 236849319 1.670000e-156 564.0
72 TraesCS7A01G312900 chr2A 79.903 826 116 36 8037 8851 236892301 236893087 2.160000e-155 560.0
73 TraesCS7A01G312900 chr2A 94.461 343 19 0 1196 1538 711853305 711853647 6.090000e-146 529.0
74 TraesCS7A01G312900 chr2A 79.967 609 90 20 8037 8642 345076966 345077545 3.820000e-113 420.0
75 TraesCS7A01G312900 chr2A 81.325 498 74 16 8037 8526 139079148 139078662 3.880000e-103 387.0
76 TraesCS7A01G312900 chr2A 86.544 327 39 4 8525 8850 220343824 220344146 1.090000e-93 355.0
77 TraesCS7A01G312900 chr2A 80.930 430 66 12 5378 5804 772696202 772695786 8.570000e-85 326.0
78 TraesCS7A01G312900 chr2A 97.297 37 1 0 8002 8038 83644990 83644954 7.420000e-06 63.9
79 TraesCS7A01G312900 chr4A 76.817 1087 178 37 4662 5727 2743962 2742929 2.170000e-150 544.0
80 TraesCS7A01G312900 chr4A 94.395 339 19 0 1197 1535 34269508 34269846 1.020000e-143 521.0
81 TraesCS7A01G312900 chr4A 80.650 615 90 25 8037 8644 409745029 409744437 4.870000e-122 449.0
82 TraesCS7A01G312900 chr4A 79.772 613 88 29 8042 8644 409752859 409752273 6.400000e-111 412.0
83 TraesCS7A01G312900 chr4A 87.565 193 21 3 3770 3961 674594891 674594701 4.160000e-53 220.0
84 TraesCS7A01G312900 chr4A 95.349 43 2 0 3000 3042 137185738 137185780 1.590000e-07 69.4
85 TraesCS7A01G312900 chr4A 97.222 36 1 0 7998 8033 686629007 686629042 2.670000e-05 62.1
86 TraesCS7A01G312900 chr4A 92.857 42 2 1 7992 8033 686594945 686594985 9.600000e-05 60.2
87 TraesCS7A01G312900 chr4B 93.824 340 18 3 1198 1535 597763410 597763072 7.930000e-140 508.0
88 TraesCS7A01G312900 chr4B 93.195 338 23 0 1194 1531 448532089 448532426 1.720000e-136 497.0
89 TraesCS7A01G312900 chr4B 92.857 42 3 0 5741 5782 500866836 500866795 2.670000e-05 62.1
90 TraesCS7A01G312900 chr4D 76.041 1081 197 26 4663 5724 468894152 468895189 1.030000e-138 505.0
91 TraesCS7A01G312900 chr4D 82.234 197 30 4 3768 3962 467241696 467241503 1.980000e-36 165.0
92 TraesCS7A01G312900 chr4D 85.897 78 9 2 2969 3045 107698302 107698226 2.050000e-11 82.4
93 TraesCS7A01G312900 chr4D 92.000 50 3 1 3003 3051 500440088 500440137 1.590000e-07 69.4
94 TraesCS7A01G312900 chr4D 82.432 74 13 0 5711 5784 404109711 404109638 2.060000e-06 65.8
95 TraesCS7A01G312900 chr1D 92.197 346 26 1 1193 1537 72575136 72574791 1.030000e-133 488.0
96 TraesCS7A01G312900 chr1D 76.826 397 68 13 5000 5389 315001310 315001689 1.510000e-47 202.0
97 TraesCS7A01G312900 chr1D 84.536 194 24 5 3772 3963 302262904 302263093 4.220000e-43 187.0
98 TraesCS7A01G312900 chr1D 80.000 255 40 7 3908 4158 482224811 482225058 2.540000e-40 178.0
99 TraesCS7A01G312900 chr1D 82.474 194 33 1 3770 3962 371219967 371220160 1.530000e-37 169.0
100 TraesCS7A01G312900 chr1D 89.655 87 9 0 6187 6273 315001687 315001773 2.610000e-20 111.0
101 TraesCS7A01G312900 chrUn 94.161 274 11 1 7733 8006 399999646 399999914 6.400000e-111 412.0
102 TraesCS7A01G312900 chrUn 97.561 41 1 0 7998 8038 31704222 31704182 4.430000e-08 71.3
103 TraesCS7A01G312900 chr1A 82.629 426 55 14 8037 8456 313634713 313635125 8.450000e-95 359.0
104 TraesCS7A01G312900 chr1A 87.662 308 34 3 8544 8850 223084510 223084814 1.090000e-93 355.0
105 TraesCS7A01G312900 chr1A 82.323 198 27 5 3769 3965 18458374 18458184 1.980000e-36 165.0
106 TraesCS7A01G312900 chr1A 84.337 83 13 0 5532 5614 532828066 532828148 2.050000e-11 82.4
107 TraesCS7A01G312900 chr2B 75.351 783 157 23 5166 5932 620277212 620277974 2.370000e-90 344.0
108 TraesCS7A01G312900 chr2B 88.462 52 5 1 7987 8038 72567818 72567768 2.670000e-05 62.1
109 TraesCS7A01G312900 chr2B 85.246 61 8 1 5738 5798 247394232 247394173 2.670000e-05 62.1
110 TraesCS7A01G312900 chr2B 86.207 58 5 3 3948 4004 93655545 93655600 9.600000e-05 60.2
111 TraesCS7A01G312900 chr2B 100.000 29 0 0 2967 2995 625549930 625549958 4.000000e-03 54.7
112 TraesCS7A01G312900 chr1B 80.707 311 32 12 7598 7906 647151731 647151447 5.380000e-52 217.0
113 TraesCS7A01G312900 chr1B 86.224 196 19 7 3770 3962 408655122 408654932 1.170000e-48 206.0
114 TraesCS7A01G312900 chr1B 81.364 220 29 10 3954 4164 4086695 4086479 1.530000e-37 169.0
115 TraesCS7A01G312900 chr1B 75.953 341 65 9 5053 5389 426781376 426781703 9.200000e-35 159.0
116 TraesCS7A01G312900 chr1B 93.478 92 6 0 7602 7693 647635744 647635835 4.310000e-28 137.0
117 TraesCS7A01G312900 chr6B 85.526 76 9 1 2969 3042 47866019 47865944 2.650000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G312900 chr7A 444427625 444436477 8852 True 16349.000 16349 100.0000 1 8853 1 chr7A.!!$R5 8852
1 TraesCS7A01G312900 chr7A 444379191 444380003 812 True 1210.000 1210 93.4970 8037 8851 1 chr7A.!!$R4 814
2 TraesCS7A01G312900 chr7A 33004381 33004996 615 True 857.000 857 91.8960 1 612 1 chr7A.!!$R1 611
3 TraesCS7A01G312900 chr7B 388814647 388815446 799 True 1223.000 1223 94.4100 7212 8006 1 chr7B.!!$R2 794
4 TraesCS7A01G312900 chr7B 388842784 388843583 799 True 1218.000 1218 94.2860 7212 8006 1 chr7B.!!$R4 794
5 TraesCS7A01G312900 chr7B 388856709 388857508 799 True 1218.000 1218 94.2860 7212 8006 1 chr7B.!!$R5 794
6 TraesCS7A01G312900 chr7B 388871306 388872105 799 True 1218.000 1218 94.2860 7212 8006 1 chr7B.!!$R6 794
7 TraesCS7A01G312900 chr7B 388808268 388809029 761 True 1212.000 1212 95.3060 7241 8006 1 chr7B.!!$R1 765
8 TraesCS7A01G312900 chr7B 388828652 388829451 799 True 1206.000 1206 94.0370 7212 8006 1 chr7B.!!$R3 794
9 TraesCS7A01G312900 chr7B 388895358 388901435 6077 True 1163.500 2785 90.8820 674 6412 6 chr7B.!!$R8 5738
10 TraesCS7A01G312900 chr7B 388880134 388880647 513 True 833.000 833 95.9220 6698 7212 1 chr7B.!!$R7 514
11 TraesCS7A01G312900 chr7D 392633468 392645192 11724 True 1232.125 2667 91.6945 646 7998 8 chr7D.!!$R4 7352
12 TraesCS7A01G312900 chr3A 427768172 427769683 1511 False 1179.000 1179 81.1750 4854 6405 1 chr3A.!!$F1 1551
13 TraesCS7A01G312900 chr3A 581619433 581620396 963 False 599.000 599 78.3380 5405 6402 1 chr3A.!!$F2 997
14 TraesCS7A01G312900 chr3D 308272165 308273688 1523 False 1092.000 1092 80.1890 4857 6405 1 chr3D.!!$F2 1548
15 TraesCS7A01G312900 chr3D 531259023 531259644 621 True 845.000 845 91.2000 1 622 1 chr3D.!!$R1 621
16 TraesCS7A01G312900 chr3B 413033192 413034705 1513 True 981.000 981 79.0460 4853 6405 1 chr3B.!!$R2 1552
17 TraesCS7A01G312900 chr6D 116853995 116854612 617 False 870.000 870 92.1100 1 619 1 chr6D.!!$F1 618
18 TraesCS7A01G312900 chr5A 211614302 211614911 609 False 863.000 863 92.2950 1 606 1 chr5A.!!$F2 605
19 TraesCS7A01G312900 chr5A 461268698 461269319 621 False 835.000 835 90.9970 1 619 1 chr5A.!!$F3 618
20 TraesCS7A01G312900 chr5A 90258427 90259903 1476 False 684.000 684 75.5140 4909 6386 1 chr5A.!!$F1 1477
21 TraesCS7A01G312900 chr5D 510832049 510832670 621 False 852.000 852 91.5060 1 619 1 chr5D.!!$F2 618
22 TraesCS7A01G312900 chr5D 95297813 95299296 1483 False 778.000 778 76.6450 4898 6385 1 chr5D.!!$F1 1487
23 TraesCS7A01G312900 chr5D 540275885 540276570 685 True 536.000 536 81.2590 5323 6003 1 chr5D.!!$R4 680
24 TraesCS7A01G312900 chr6A 99768596 99769219 623 True 843.000 843 91.1860 1 618 1 chr6A.!!$R1 617
25 TraesCS7A01G312900 chr2D 358093454 358094066 612 True 843.000 843 91.5450 1 612 1 chr2D.!!$R2 611
26 TraesCS7A01G312900 chr2D 557797249 557797850 601 False 839.000 839 91.7760 1 606 1 chr2D.!!$F1 605
27 TraesCS7A01G312900 chr5B 391645453 391646415 962 False 627.000 627 78.8720 5139 6089 1 chr5B.!!$F2 950
28 TraesCS7A01G312900 chr2A 236848534 236849319 785 False 564.000 564 80.0000 8037 8851 1 chr2A.!!$F2 814
29 TraesCS7A01G312900 chr2A 236892301 236893087 786 False 560.000 560 79.9030 8037 8851 1 chr2A.!!$F3 814
30 TraesCS7A01G312900 chr2A 345076966 345077545 579 False 420.000 420 79.9670 8037 8642 1 chr2A.!!$F4 605
31 TraesCS7A01G312900 chr4A 2742929 2743962 1033 True 544.000 544 76.8170 4662 5727 1 chr4A.!!$R1 1065
32 TraesCS7A01G312900 chr4A 409744437 409745029 592 True 449.000 449 80.6500 8037 8644 1 chr4A.!!$R2 607
33 TraesCS7A01G312900 chr4A 409752273 409752859 586 True 412.000 412 79.7720 8042 8644 1 chr4A.!!$R3 602
34 TraesCS7A01G312900 chr4D 468894152 468895189 1037 False 505.000 505 76.0410 4663 5724 1 chr4D.!!$F1 1061
35 TraesCS7A01G312900 chr2B 620277212 620277974 762 False 344.000 344 75.3510 5166 5932 1 chr2B.!!$F2 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 594 0.463654 AGTCTGTTTGCTTCCACGCA 60.464 50.000 0.00 0.00 38.31 5.24 F
1201 1222 0.102120 TTGCCTGTTTGCAACGGAAG 59.898 50.000 0.00 0.00 45.77 3.46 F
1845 1903 0.248743 CGTGATGTGCATGCCAATCC 60.249 55.000 16.68 10.64 0.00 3.01 F
3042 3702 0.328258 ATTTGGGGACGAAGGGAGTG 59.672 55.000 0.00 0.00 37.08 3.51 F
3231 3891 0.968393 ACACCGGTGCAGGTTTGTTT 60.968 50.000 34.26 7.93 43.00 2.83 F
4569 5484 1.003223 CCACGAGGTTTGTTTTCGACC 60.003 52.381 0.00 0.00 37.73 4.79 F
5481 6445 0.039618 GTTGGCCAGGGATCTTGGAA 59.960 55.000 17.52 4.57 0.00 3.53 F
5482 6446 0.332632 TTGGCCAGGGATCTTGGAAG 59.667 55.000 17.52 0.00 0.00 3.46 F
5636 6608 0.386838 GCATACTTTGGGATGCCTGC 59.613 55.000 4.35 0.35 42.18 4.85 F
7376 12884 0.038251 CAGTCCAGTAAGCTCGCACA 60.038 55.000 0.00 0.00 0.00 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1563 0.108567 GCACCAACCAAACCAAACGT 60.109 50.000 0.00 0.0 0.00 3.99 R
2426 2973 1.197492 CGCAAGCAACTGTTAGCATGA 59.803 47.619 17.71 0.0 31.63 3.07 R
3203 3863 0.398696 TGCACCGGTGTAAGGTTCAT 59.601 50.000 33.92 0.0 40.59 2.57 R
4813 5740 0.179124 TTTGACAAACACCTTGCGGC 60.179 50.000 0.00 0.0 38.75 6.53 R
5218 6174 1.094073 CCGCTGCATTCCTTCTCAGG 61.094 60.000 0.00 0.0 42.50 3.86 R
6454 11946 0.613260 TAAGTCGCCACAGATGCCTT 59.387 50.000 0.00 0.0 0.00 4.35 R
7100 12599 0.602638 TGCGCCTCTGTAACAAGTGG 60.603 55.000 4.18 0.0 34.55 4.00 R
7239 12738 1.284198 AGCCTCTGAAATGATGCCTGT 59.716 47.619 0.00 0.0 0.00 4.00 R
7579 13089 0.178970 ATGCCCATTCATCCTCTGGC 60.179 55.000 0.00 0.0 39.33 4.85 R
8686 14203 0.041488 GTACCGCTACCGATGACTCG 60.041 60.000 0.00 0.0 44.62 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.040339 TTTTTGGGCAAGCACCGAGT 61.040 50.000 0.00 0.00 0.00 4.18
63 64 0.535335 ACCGCCATTCGTGTATCTGT 59.465 50.000 0.00 0.00 36.19 3.41
213 214 2.342279 CGGCCGAGTTCAAGACCA 59.658 61.111 24.07 0.00 0.00 4.02
270 271 4.579384 CAGGTGGCCGTGGTTGGT 62.579 66.667 0.00 0.00 0.00 3.67
470 483 1.525077 GGGAGGACACACGCAAACA 60.525 57.895 0.00 0.00 0.00 2.83
514 528 1.098712 TTTCACCTCAAAAGCGGCGT 61.099 50.000 9.37 0.00 0.00 5.68
571 587 4.434713 AACGACAAAAGTCTGTTTGCTT 57.565 36.364 0.00 0.00 41.33 3.91
574 590 3.181501 CGACAAAAGTCTGTTTGCTTCCA 60.182 43.478 0.00 0.00 41.33 3.53
578 594 0.463654 AGTCTGTTTGCTTCCACGCA 60.464 50.000 0.00 0.00 38.31 5.24
582 598 0.746204 TGTTTGCTTCCACGCACTGA 60.746 50.000 0.00 0.00 40.09 3.41
584 600 0.463654 TTTGCTTCCACGCACTGAGT 60.464 50.000 0.00 0.00 40.09 3.41
613 629 8.081633 TCTCGTTTGTCCGTTTTACTCTAAATA 58.918 33.333 0.00 0.00 0.00 1.40
619 635 6.071952 TGTCCGTTTTACTCTAAATAGACGGT 60.072 38.462 10.81 3.06 44.10 4.83
622 638 7.120579 TCCGTTTTACTCTAAATAGACGGTGTA 59.879 37.037 10.81 0.00 44.10 2.90
623 639 7.754924 CCGTTTTACTCTAAATAGACGGTGTAA 59.245 37.037 0.00 3.32 41.27 2.41
624 640 8.792538 CGTTTTACTCTAAATAGACGGTGTAAG 58.207 37.037 0.00 0.00 30.19 2.34
625 641 9.080915 GTTTTACTCTAAATAGACGGTGTAAGG 57.919 37.037 0.00 0.00 0.00 2.69
626 642 5.259832 ACTCTAAATAGACGGTGTAAGGC 57.740 43.478 0.00 0.00 0.00 4.35
627 643 4.099113 ACTCTAAATAGACGGTGTAAGGCC 59.901 45.833 0.00 0.00 0.00 5.19
651 667 1.822506 GGTGGAGTTGGCCTAAGTTC 58.177 55.000 3.32 0.00 0.00 3.01
878 899 1.306482 CTCCCCTCCCTTCTCAGCA 60.306 63.158 0.00 0.00 0.00 4.41
885 906 0.756294 TCCCTTCTCAGCAACAACGA 59.244 50.000 0.00 0.00 0.00 3.85
987 1008 2.159234 GCGAGATCAATAATCTGCTGGC 59.841 50.000 0.00 0.00 45.06 4.85
1012 1033 4.570874 GGAGAATGGAGGCGGCCC 62.571 72.222 17.02 7.51 0.00 5.80
1125 1146 4.173924 GGCTCCTCTCAGGCAGCC 62.174 72.222 1.84 1.84 44.97 4.85
1199 1220 3.926003 TTGCCTGTTTGCAACGGA 58.074 50.000 0.00 0.00 45.77 4.69
1200 1221 2.193532 TTGCCTGTTTGCAACGGAA 58.806 47.368 0.00 0.00 45.77 4.30
1201 1222 0.102120 TTGCCTGTTTGCAACGGAAG 59.898 50.000 0.00 0.00 45.77 3.46
1217 1238 5.012328 ACGGAAGTGAATCCTCTAACATC 57.988 43.478 0.00 0.00 46.97 3.06
1218 1239 4.466370 ACGGAAGTGAATCCTCTAACATCA 59.534 41.667 0.00 0.00 46.97 3.07
1219 1240 5.046591 ACGGAAGTGAATCCTCTAACATCAA 60.047 40.000 0.00 0.00 46.97 2.57
1220 1241 5.521735 CGGAAGTGAATCCTCTAACATCAAG 59.478 44.000 0.00 0.00 37.34 3.02
1221 1242 6.628175 CGGAAGTGAATCCTCTAACATCAAGA 60.628 42.308 0.00 0.00 37.34 3.02
1222 1243 7.106239 GGAAGTGAATCCTCTAACATCAAGAA 58.894 38.462 0.00 0.00 36.50 2.52
1223 1244 7.279758 GGAAGTGAATCCTCTAACATCAAGAAG 59.720 40.741 0.00 0.00 36.50 2.85
1224 1245 7.487822 AGTGAATCCTCTAACATCAAGAAGA 57.512 36.000 0.00 0.00 0.00 2.87
1225 1246 7.555087 AGTGAATCCTCTAACATCAAGAAGAG 58.445 38.462 0.00 0.00 36.13 2.85
1226 1247 7.398618 AGTGAATCCTCTAACATCAAGAAGAGA 59.601 37.037 0.00 0.00 38.16 3.10
1227 1248 8.037758 GTGAATCCTCTAACATCAAGAAGAGAA 58.962 37.037 0.00 0.00 38.16 2.87
1228 1249 8.256605 TGAATCCTCTAACATCAAGAAGAGAAG 58.743 37.037 0.00 0.00 38.16 2.85
1229 1250 7.732222 ATCCTCTAACATCAAGAAGAGAAGT 57.268 36.000 0.00 0.00 38.16 3.01
1230 1251 7.164230 TCCTCTAACATCAAGAAGAGAAGTC 57.836 40.000 0.00 0.00 38.16 3.01
1231 1252 6.721668 TCCTCTAACATCAAGAAGAGAAGTCA 59.278 38.462 0.00 0.00 38.16 3.41
1232 1253 6.811170 CCTCTAACATCAAGAAGAGAAGTCAC 59.189 42.308 0.00 0.00 38.16 3.67
1233 1254 6.692486 TCTAACATCAAGAAGAGAAGTCACC 58.308 40.000 0.00 0.00 0.00 4.02
1234 1255 5.559148 AACATCAAGAAGAGAAGTCACCT 57.441 39.130 0.00 0.00 0.00 4.00
1235 1256 6.672266 AACATCAAGAAGAGAAGTCACCTA 57.328 37.500 0.00 0.00 0.00 3.08
1236 1257 6.672266 ACATCAAGAAGAGAAGTCACCTAA 57.328 37.500 0.00 0.00 0.00 2.69
1237 1258 6.696411 ACATCAAGAAGAGAAGTCACCTAAG 58.304 40.000 0.00 0.00 0.00 2.18
1238 1259 5.140747 TCAAGAAGAGAAGTCACCTAAGC 57.859 43.478 0.00 0.00 0.00 3.09
1239 1260 4.835615 TCAAGAAGAGAAGTCACCTAAGCT 59.164 41.667 0.00 0.00 0.00 3.74
1240 1261 6.010850 TCAAGAAGAGAAGTCACCTAAGCTA 58.989 40.000 0.00 0.00 0.00 3.32
1241 1262 5.907866 AGAAGAGAAGTCACCTAAGCTAC 57.092 43.478 0.00 0.00 0.00 3.58
1242 1263 5.326069 AGAAGAGAAGTCACCTAAGCTACA 58.674 41.667 0.00 0.00 0.00 2.74
1243 1264 5.775701 AGAAGAGAAGTCACCTAAGCTACAA 59.224 40.000 0.00 0.00 0.00 2.41
1244 1265 6.439058 AGAAGAGAAGTCACCTAAGCTACAAT 59.561 38.462 0.00 0.00 0.00 2.71
1245 1266 6.613153 AGAGAAGTCACCTAAGCTACAATT 57.387 37.500 0.00 0.00 0.00 2.32
1246 1267 6.635755 AGAGAAGTCACCTAAGCTACAATTC 58.364 40.000 0.00 0.00 0.00 2.17
1247 1268 6.439058 AGAGAAGTCACCTAAGCTACAATTCT 59.561 38.462 0.00 0.00 0.00 2.40
1248 1269 6.635755 AGAAGTCACCTAAGCTACAATTCTC 58.364 40.000 0.00 0.00 0.00 2.87
1249 1270 6.439058 AGAAGTCACCTAAGCTACAATTCTCT 59.561 38.462 0.00 0.00 0.00 3.10
1250 1271 7.616150 AGAAGTCACCTAAGCTACAATTCTCTA 59.384 37.037 0.00 0.00 0.00 2.43
1251 1272 7.719871 AGTCACCTAAGCTACAATTCTCTAA 57.280 36.000 0.00 0.00 0.00 2.10
1252 1273 7.548967 AGTCACCTAAGCTACAATTCTCTAAC 58.451 38.462 0.00 0.00 0.00 2.34
1253 1274 7.397761 AGTCACCTAAGCTACAATTCTCTAACT 59.602 37.037 0.00 0.00 0.00 2.24
1254 1275 8.035984 GTCACCTAAGCTACAATTCTCTAACTT 58.964 37.037 0.00 0.00 0.00 2.66
1255 1276 8.594550 TCACCTAAGCTACAATTCTCTAACTTT 58.405 33.333 0.00 0.00 0.00 2.66
1256 1277 9.220767 CACCTAAGCTACAATTCTCTAACTTTT 57.779 33.333 0.00 0.00 0.00 2.27
1257 1278 9.438228 ACCTAAGCTACAATTCTCTAACTTTTC 57.562 33.333 0.00 0.00 0.00 2.29
1258 1279 9.660180 CCTAAGCTACAATTCTCTAACTTTTCT 57.340 33.333 0.00 0.00 0.00 2.52
1261 1282 9.785982 AAGCTACAATTCTCTAACTTTTCTCTT 57.214 29.630 0.00 0.00 0.00 2.85
1262 1283 9.785982 AGCTACAATTCTCTAACTTTTCTCTTT 57.214 29.630 0.00 0.00 0.00 2.52
1266 1287 9.396022 ACAATTCTCTAACTTTTCTCTTTCACA 57.604 29.630 0.00 0.00 0.00 3.58
1269 1290 8.608844 TTCTCTAACTTTTCTCTTTCACATCC 57.391 34.615 0.00 0.00 0.00 3.51
1270 1291 7.735917 TCTCTAACTTTTCTCTTTCACATCCA 58.264 34.615 0.00 0.00 0.00 3.41
1271 1292 8.378565 TCTCTAACTTTTCTCTTTCACATCCAT 58.621 33.333 0.00 0.00 0.00 3.41
1272 1293 9.658799 CTCTAACTTTTCTCTTTCACATCCATA 57.341 33.333 0.00 0.00 0.00 2.74
1275 1296 8.868522 AACTTTTCTCTTTCACATCCATATGA 57.131 30.769 3.65 0.00 36.54 2.15
1276 1297 9.471702 AACTTTTCTCTTTCACATCCATATGAT 57.528 29.630 3.65 0.00 36.54 2.45
1277 1298 9.471702 ACTTTTCTCTTTCACATCCATATGATT 57.528 29.630 3.65 0.00 36.54 2.57
1281 1302 9.565090 TTCTCTTTCACATCCATATGATTAAGG 57.435 33.333 3.65 0.00 36.54 2.69
1282 1303 7.663081 TCTCTTTCACATCCATATGATTAAGGC 59.337 37.037 3.65 0.00 36.54 4.35
1283 1304 7.520798 TCTTTCACATCCATATGATTAAGGCT 58.479 34.615 3.65 0.00 36.54 4.58
1284 1305 8.659527 TCTTTCACATCCATATGATTAAGGCTA 58.340 33.333 3.65 0.00 36.54 3.93
1285 1306 9.288576 CTTTCACATCCATATGATTAAGGCTAA 57.711 33.333 3.65 0.00 36.54 3.09
1286 1307 9.639563 TTTCACATCCATATGATTAAGGCTAAA 57.360 29.630 3.65 0.00 36.54 1.85
1287 1308 9.639563 TTCACATCCATATGATTAAGGCTAAAA 57.360 29.630 3.65 0.00 36.54 1.52
1288 1309 9.812347 TCACATCCATATGATTAAGGCTAAAAT 57.188 29.630 3.65 0.00 36.54 1.82
1289 1310 9.850628 CACATCCATATGATTAAGGCTAAAATG 57.149 33.333 3.65 0.00 36.54 2.32
1290 1311 9.812347 ACATCCATATGATTAAGGCTAAAATGA 57.188 29.630 3.65 0.00 36.54 2.57
1293 1314 9.866655 TCCATATGATTAAGGCTAAAATGACTT 57.133 29.630 3.65 0.00 38.98 3.01
1294 1315 9.903682 CCATATGATTAAGGCTAAAATGACTTG 57.096 33.333 3.65 0.00 35.80 3.16
1408 1429 8.678593 TTATTTACATGAACAGTAACCACACA 57.321 30.769 0.00 0.00 31.67 3.72
1409 1430 5.994887 TTACATGAACAGTAACCACACAC 57.005 39.130 0.00 0.00 0.00 3.82
1410 1431 3.879998 ACATGAACAGTAACCACACACA 58.120 40.909 0.00 0.00 0.00 3.72
1411 1432 4.460263 ACATGAACAGTAACCACACACAT 58.540 39.130 0.00 0.00 0.00 3.21
1412 1433 5.616270 ACATGAACAGTAACCACACACATA 58.384 37.500 0.00 0.00 0.00 2.29
1413 1434 6.058833 ACATGAACAGTAACCACACACATAA 58.941 36.000 0.00 0.00 0.00 1.90
1414 1435 5.994887 TGAACAGTAACCACACACATAAC 57.005 39.130 0.00 0.00 0.00 1.89
1415 1436 4.817464 TGAACAGTAACCACACACATAACC 59.183 41.667 0.00 0.00 0.00 2.85
1416 1437 4.699925 ACAGTAACCACACACATAACCT 57.300 40.909 0.00 0.00 0.00 3.50
1417 1438 4.385825 ACAGTAACCACACACATAACCTG 58.614 43.478 0.00 0.00 0.00 4.00
1418 1439 3.188460 CAGTAACCACACACATAACCTGC 59.812 47.826 0.00 0.00 0.00 4.85
1419 1440 2.656947 AACCACACACATAACCTGCT 57.343 45.000 0.00 0.00 0.00 4.24
1420 1441 3.780804 AACCACACACATAACCTGCTA 57.219 42.857 0.00 0.00 0.00 3.49
1421 1442 3.053831 ACCACACACATAACCTGCTAC 57.946 47.619 0.00 0.00 0.00 3.58
1422 1443 2.370519 ACCACACACATAACCTGCTACA 59.629 45.455 0.00 0.00 0.00 2.74
1423 1444 3.002791 CCACACACATAACCTGCTACAG 58.997 50.000 0.00 0.00 0.00 2.74
1424 1445 3.557054 CCACACACATAACCTGCTACAGT 60.557 47.826 0.00 0.00 0.00 3.55
1425 1446 4.322424 CCACACACATAACCTGCTACAGTA 60.322 45.833 0.00 0.00 0.00 2.74
1426 1447 4.864806 CACACACATAACCTGCTACAGTAG 59.135 45.833 2.85 2.85 0.00 2.57
1427 1448 4.770531 ACACACATAACCTGCTACAGTAGA 59.229 41.667 12.15 0.00 0.00 2.59
1428 1449 5.422331 ACACACATAACCTGCTACAGTAGAT 59.578 40.000 12.15 0.00 0.00 1.98
1429 1450 6.605995 ACACACATAACCTGCTACAGTAGATA 59.394 38.462 12.15 0.00 0.00 1.98
1430 1451 7.123697 ACACACATAACCTGCTACAGTAGATAA 59.876 37.037 12.15 0.00 0.00 1.75
1431 1452 8.144478 CACACATAACCTGCTACAGTAGATAAT 58.856 37.037 12.15 0.00 0.00 1.28
1432 1453 8.705594 ACACATAACCTGCTACAGTAGATAATT 58.294 33.333 12.15 2.83 0.00 1.40
1451 1472 9.273016 AGATAATTACATTATTTGCTACAGCGT 57.727 29.630 0.00 0.00 38.52 5.07
1452 1473 9.530129 GATAATTACATTATTTGCTACAGCGTC 57.470 33.333 0.00 0.00 38.52 5.19
1453 1474 7.553881 AATTACATTATTTGCTACAGCGTCT 57.446 32.000 0.00 0.00 45.83 4.18
1454 1475 6.583912 TTACATTATTTGCTACAGCGTCTC 57.416 37.500 0.00 0.00 45.83 3.36
1455 1476 4.759782 ACATTATTTGCTACAGCGTCTCT 58.240 39.130 0.00 0.00 45.83 3.10
1457 1478 4.450082 TTATTTGCTACAGCGTCTCTGA 57.550 40.909 0.00 0.00 45.72 3.27
1458 1479 2.065993 TTTGCTACAGCGTCTCTGAC 57.934 50.000 0.00 0.00 45.72 3.51
1459 1480 1.248486 TTGCTACAGCGTCTCTGACT 58.752 50.000 0.00 0.00 45.72 3.41
1460 1481 1.248486 TGCTACAGCGTCTCTGACTT 58.752 50.000 0.00 0.00 45.72 3.01
1461 1482 1.613925 TGCTACAGCGTCTCTGACTTT 59.386 47.619 0.00 0.00 45.72 2.66
1462 1483 2.255316 GCTACAGCGTCTCTGACTTTC 58.745 52.381 0.00 0.00 45.72 2.62
1463 1484 2.869897 CTACAGCGTCTCTGACTTTCC 58.130 52.381 0.00 0.00 45.72 3.13
1464 1485 1.333177 ACAGCGTCTCTGACTTTCCT 58.667 50.000 0.00 0.00 45.72 3.36
1465 1486 1.689273 ACAGCGTCTCTGACTTTCCTT 59.311 47.619 0.00 0.00 45.72 3.36
1466 1487 2.288518 ACAGCGTCTCTGACTTTCCTTC 60.289 50.000 0.00 0.00 45.72 3.46
1467 1488 2.029470 CAGCGTCTCTGACTTTCCTTCT 60.029 50.000 0.00 0.00 45.72 2.85
1468 1489 2.630580 AGCGTCTCTGACTTTCCTTCTT 59.369 45.455 0.00 0.00 0.00 2.52
1469 1490 3.070302 AGCGTCTCTGACTTTCCTTCTTT 59.930 43.478 0.00 0.00 0.00 2.52
1470 1491 3.185391 GCGTCTCTGACTTTCCTTCTTTG 59.815 47.826 0.00 0.00 0.00 2.77
1471 1492 4.372656 CGTCTCTGACTTTCCTTCTTTGT 58.627 43.478 0.00 0.00 0.00 2.83
1472 1493 4.811557 CGTCTCTGACTTTCCTTCTTTGTT 59.188 41.667 0.00 0.00 0.00 2.83
1473 1494 5.294552 CGTCTCTGACTTTCCTTCTTTGTTT 59.705 40.000 0.00 0.00 0.00 2.83
1474 1495 6.183360 CGTCTCTGACTTTCCTTCTTTGTTTT 60.183 38.462 0.00 0.00 0.00 2.43
1475 1496 6.969473 GTCTCTGACTTTCCTTCTTTGTTTTG 59.031 38.462 0.00 0.00 0.00 2.44
1476 1497 5.650543 TCTGACTTTCCTTCTTTGTTTTGC 58.349 37.500 0.00 0.00 0.00 3.68
1477 1498 5.184864 TCTGACTTTCCTTCTTTGTTTTGCA 59.815 36.000 0.00 0.00 0.00 4.08
1478 1499 5.167845 TGACTTTCCTTCTTTGTTTTGCAC 58.832 37.500 0.00 0.00 0.00 4.57
1479 1500 5.047377 TGACTTTCCTTCTTTGTTTTGCACT 60.047 36.000 0.00 0.00 0.00 4.40
1480 1501 6.151985 TGACTTTCCTTCTTTGTTTTGCACTA 59.848 34.615 0.00 0.00 0.00 2.74
1481 1502 6.564328 ACTTTCCTTCTTTGTTTTGCACTAG 58.436 36.000 0.00 0.00 0.00 2.57
1482 1503 6.377146 ACTTTCCTTCTTTGTTTTGCACTAGA 59.623 34.615 0.00 0.00 0.00 2.43
1483 1504 6.959639 TTCCTTCTTTGTTTTGCACTAGAT 57.040 33.333 0.00 0.00 0.00 1.98
1484 1505 6.959639 TCCTTCTTTGTTTTGCACTAGATT 57.040 33.333 0.00 0.00 0.00 2.40
1485 1506 6.738114 TCCTTCTTTGTTTTGCACTAGATTG 58.262 36.000 0.00 0.00 0.00 2.67
1486 1507 5.403466 CCTTCTTTGTTTTGCACTAGATTGC 59.597 40.000 0.00 0.00 43.31 3.56
1495 1516 2.898705 GCACTAGATTGCACTGTAGCT 58.101 47.619 8.00 0.00 42.49 3.32
1496 1517 3.265791 GCACTAGATTGCACTGTAGCTT 58.734 45.455 8.00 0.00 42.49 3.74
1497 1518 4.433615 GCACTAGATTGCACTGTAGCTTA 58.566 43.478 8.00 0.00 42.49 3.09
1498 1519 4.505922 GCACTAGATTGCACTGTAGCTTAG 59.494 45.833 8.00 0.00 42.49 2.18
1499 1520 5.046529 CACTAGATTGCACTGTAGCTTAGG 58.953 45.833 8.00 0.00 34.99 2.69
1500 1521 4.712337 ACTAGATTGCACTGTAGCTTAGGT 59.288 41.667 8.00 0.00 34.99 3.08
1501 1522 3.866651 AGATTGCACTGTAGCTTAGGTG 58.133 45.455 0.00 0.00 34.99 4.00
1502 1523 3.515502 AGATTGCACTGTAGCTTAGGTGA 59.484 43.478 14.05 0.00 34.99 4.02
1503 1524 2.743636 TGCACTGTAGCTTAGGTGAC 57.256 50.000 14.05 7.84 34.99 3.67
1504 1525 2.248248 TGCACTGTAGCTTAGGTGACT 58.752 47.619 14.05 0.00 39.04 3.41
1505 1526 2.632996 TGCACTGTAGCTTAGGTGACTT 59.367 45.455 14.05 0.00 37.36 3.01
1506 1527 3.071023 TGCACTGTAGCTTAGGTGACTTT 59.929 43.478 14.05 0.00 37.36 2.66
1507 1528 3.680458 GCACTGTAGCTTAGGTGACTTTC 59.320 47.826 14.05 0.00 43.67 2.62
1508 1529 4.246458 CACTGTAGCTTAGGTGACTTTCC 58.754 47.826 0.00 0.00 43.67 3.13
1509 1530 4.021016 CACTGTAGCTTAGGTGACTTTCCT 60.021 45.833 0.00 0.00 43.67 3.36
1510 1531 4.221041 ACTGTAGCTTAGGTGACTTTCCTC 59.779 45.833 0.00 0.00 43.67 3.71
1511 1532 4.417437 TGTAGCTTAGGTGACTTTCCTCT 58.583 43.478 0.00 0.00 43.67 3.69
1512 1533 4.838986 TGTAGCTTAGGTGACTTTCCTCTT 59.161 41.667 0.00 0.00 43.67 2.85
1513 1534 4.984146 AGCTTAGGTGACTTTCCTCTTT 57.016 40.909 0.00 0.00 43.67 2.52
1514 1535 6.495872 TGTAGCTTAGGTGACTTTCCTCTTTA 59.504 38.462 0.00 0.00 43.67 1.85
1515 1536 6.435292 AGCTTAGGTGACTTTCCTCTTTAA 57.565 37.500 0.00 0.00 43.67 1.52
1516 1537 7.021998 AGCTTAGGTGACTTTCCTCTTTAAT 57.978 36.000 0.00 0.00 43.67 1.40
1517 1538 6.881602 AGCTTAGGTGACTTTCCTCTTTAATG 59.118 38.462 0.00 0.00 43.67 1.90
1518 1539 6.655425 GCTTAGGTGACTTTCCTCTTTAATGT 59.345 38.462 0.00 0.00 43.67 2.71
1519 1540 7.175119 GCTTAGGTGACTTTCCTCTTTAATGTT 59.825 37.037 0.00 0.00 43.67 2.71
1520 1541 9.720769 CTTAGGTGACTTTCCTCTTTAATGTTA 57.279 33.333 0.00 0.00 43.67 2.41
1521 1542 9.720769 TTAGGTGACTTTCCTCTTTAATGTTAG 57.279 33.333 0.00 0.00 43.67 2.34
1522 1543 7.974504 AGGTGACTTTCCTCTTTAATGTTAGA 58.025 34.615 0.00 0.00 37.44 2.10
1523 1544 8.097662 AGGTGACTTTCCTCTTTAATGTTAGAG 58.902 37.037 0.00 0.00 37.44 2.43
1533 1554 8.655651 CTCTTTAATGTTAGAGGATCCACTTC 57.344 38.462 17.39 11.20 35.37 3.01
1534 1555 7.565680 TCTTTAATGTTAGAGGATCCACTTCC 58.434 38.462 17.39 8.65 33.66 3.46
1535 1556 4.408182 AATGTTAGAGGATCCACTTCCG 57.592 45.455 17.39 0.00 40.94 4.30
1536 1557 2.816411 TGTTAGAGGATCCACTTCCGT 58.184 47.619 17.39 0.00 40.94 4.69
1537 1558 3.170717 TGTTAGAGGATCCACTTCCGTT 58.829 45.455 17.39 0.00 40.94 4.44
1538 1559 3.581332 TGTTAGAGGATCCACTTCCGTTT 59.419 43.478 17.39 0.00 40.94 3.60
1539 1560 2.770164 AGAGGATCCACTTCCGTTTG 57.230 50.000 15.82 0.00 40.94 2.93
1540 1561 1.087501 GAGGATCCACTTCCGTTTGC 58.912 55.000 15.82 0.00 40.94 3.68
1541 1562 0.400213 AGGATCCACTTCCGTTTGCA 59.600 50.000 15.82 0.00 40.94 4.08
1542 1563 1.202879 AGGATCCACTTCCGTTTGCAA 60.203 47.619 15.82 0.00 40.94 4.08
1543 1564 1.068541 GGATCCACTTCCGTTTGCAAC 60.069 52.381 6.95 0.00 0.00 4.17
1630 1653 3.572584 CTCTTCTGCCATTTCTTGTTGC 58.427 45.455 0.00 0.00 0.00 4.17
1721 1757 5.419542 TCCTCTGTTGTTAGATGTGTATGC 58.580 41.667 0.00 0.00 0.00 3.14
1826 1884 7.702772 TGTGTGTTTATGTTTTTGTATGTCACC 59.297 33.333 0.00 0.00 0.00 4.02
1845 1903 0.248743 CGTGATGTGCATGCCAATCC 60.249 55.000 16.68 10.64 0.00 3.01
1905 1964 0.991146 TCAGCATTGCAGGTCCCTAA 59.009 50.000 11.91 0.00 0.00 2.69
1984 2044 6.456181 CGCTCAATCATGGTTCTTAACTTCTC 60.456 42.308 0.00 0.00 0.00 2.87
2044 2402 2.029110 TGTCTCTGTCATTGCATCGTGA 60.029 45.455 0.00 0.00 0.00 4.35
2068 2426 7.384660 TGAACACCAATGAAGAAATTATTGCAC 59.615 33.333 0.00 0.00 32.01 4.57
2073 2431 7.599998 ACCAATGAAGAAATTATTGCACTGTTC 59.400 33.333 0.00 0.00 32.01 3.18
2078 2436 9.248291 TGAAGAAATTATTGCACTGTTCTTTTC 57.752 29.630 11.09 4.90 35.91 2.29
2093 2454 5.602145 TGTTCTTTTCCCATCCATTGTTCTT 59.398 36.000 0.00 0.00 0.00 2.52
2115 2476 1.546923 TGATCTCCGTCTTGGCGTTAA 59.453 47.619 0.00 0.00 37.80 2.01
2139 2500 6.896969 ACAGTTTGTTGACCAAATGTTTTTG 58.103 32.000 0.00 0.00 44.50 2.44
2140 2501 5.794448 CAGTTTGTTGACCAAATGTTTTTGC 59.206 36.000 0.00 0.00 44.50 3.68
2166 2527 7.112565 CGCGAAATATTTGATTTCTTCCATCAG 59.887 37.037 5.17 0.00 36.24 2.90
2181 2542 7.212976 TCTTCCATCAGATCTTACAATGCTAC 58.787 38.462 0.00 0.00 0.00 3.58
2182 2543 6.737720 TCCATCAGATCTTACAATGCTACT 57.262 37.500 0.00 0.00 0.00 2.57
2183 2544 7.839680 TCCATCAGATCTTACAATGCTACTA 57.160 36.000 0.00 0.00 0.00 1.82
2302 2666 8.253810 TCAGATTTATTTATATGCTCCTCTCCG 58.746 37.037 0.00 0.00 0.00 4.63
2372 2919 8.806429 ATTACATATGACTTGACCACATCAAA 57.194 30.769 10.38 0.00 46.80 2.69
2382 2929 4.930963 TGACCACATCAAACAATTGTGAC 58.069 39.130 12.82 0.00 42.59 3.67
2478 3025 5.234466 AGCTTAGTTTCAGTCAGGTTCAT 57.766 39.130 0.00 0.00 0.00 2.57
2492 3039 9.599866 CAGTCAGGTTCATACATAAAGTAATCA 57.400 33.333 0.00 0.00 36.05 2.57
2615 3162 1.065418 GGTGTTGGGGTGTATCTCAGG 60.065 57.143 0.00 0.00 0.00 3.86
2616 3163 1.906574 GTGTTGGGGTGTATCTCAGGA 59.093 52.381 0.00 0.00 0.00 3.86
2617 3164 1.906574 TGTTGGGGTGTATCTCAGGAC 59.093 52.381 0.00 0.00 0.00 3.85
2618 3165 2.188817 GTTGGGGTGTATCTCAGGACT 58.811 52.381 0.00 0.00 0.00 3.85
2619 3166 2.160721 TGGGGTGTATCTCAGGACTC 57.839 55.000 0.00 0.00 0.00 3.36
2620 3167 1.361197 TGGGGTGTATCTCAGGACTCA 59.639 52.381 0.00 0.00 0.00 3.41
2621 3168 2.035632 GGGGTGTATCTCAGGACTCAG 58.964 57.143 0.00 0.00 0.00 3.35
2643 3190 8.510243 TCAGATTATGAACATGTAGCACAATT 57.490 30.769 0.00 0.00 34.02 2.32
2672 3219 7.243595 AGGGGTAGTATAAGTTAGGTAGGCTAT 59.756 40.741 0.00 0.00 0.00 2.97
2752 3304 7.054751 ACACAAGCTAGTATTTAAGATTCCCC 58.945 38.462 0.00 0.00 0.00 4.81
2860 3517 1.338973 AGGTTCGTCAGCGTGTCTTTA 59.661 47.619 0.00 0.00 39.49 1.85
2894 3551 5.445806 GCTAACCTTTGTTTTTGTGTTGCTG 60.446 40.000 0.00 0.00 35.87 4.41
2985 3645 0.614134 AGTACTCCCTCCGTCCCAAC 60.614 60.000 0.00 0.00 0.00 3.77
3003 3663 4.286910 CCAACATAAGTGTCGTGGTTTTG 58.713 43.478 0.00 0.00 37.67 2.44
3004 3664 4.035792 CCAACATAAGTGTCGTGGTTTTGA 59.964 41.667 0.00 0.00 37.67 2.69
3005 3665 5.449314 CCAACATAAGTGTCGTGGTTTTGAA 60.449 40.000 0.00 0.00 37.67 2.69
3006 3666 5.164606 ACATAAGTGTCGTGGTTTTGAAC 57.835 39.130 0.00 0.00 31.41 3.18
3007 3667 4.879545 ACATAAGTGTCGTGGTTTTGAACT 59.120 37.500 0.00 0.00 31.41 3.01
3027 3687 7.411274 TGAACTAAAACCACGACACTTATTTG 58.589 34.615 0.00 0.00 0.00 2.32
3034 3694 1.619827 ACGACACTTATTTGGGGACGA 59.380 47.619 0.00 0.00 0.00 4.20
3042 3702 0.328258 ATTTGGGGACGAAGGGAGTG 59.672 55.000 0.00 0.00 37.08 3.51
3231 3891 0.968393 ACACCGGTGCAGGTTTGTTT 60.968 50.000 34.26 7.93 43.00 2.83
3237 3897 3.243569 CCGGTGCAGGTTTGTTTTATCAA 60.244 43.478 0.00 0.00 0.00 2.57
3251 3911 5.227152 GTTTTATCAAAACGTTGCCCAGAT 58.773 37.500 0.00 4.17 41.04 2.90
3362 4023 5.142061 TCATCAACGTGTCTTTAGCCTTA 57.858 39.130 0.00 0.00 0.00 2.69
3424 4086 4.062677 TGTGCAACGAGTTTTAGGTAGT 57.937 40.909 0.00 0.00 42.39 2.73
3499 4163 3.340814 AGTGGCCAAGTCATAGTTCTG 57.659 47.619 7.24 0.00 0.00 3.02
3798 4473 1.065600 GCACATGTGTTGCAACGGT 59.934 52.632 26.01 15.87 0.00 4.83
3835 4510 4.147321 AGTGGTTCAGCATCAATCTTGTT 58.853 39.130 0.00 0.00 0.00 2.83
3845 4520 9.346005 TCAGCATCAATCTTGTTTGACATATAT 57.654 29.630 0.00 0.00 38.37 0.86
3933 4745 6.986231 AGGCAAGGAAAGTTTTGATTTAGTTG 59.014 34.615 0.00 0.00 0.00 3.16
3936 4748 7.169813 GCAAGGAAAGTTTTGATTTAGTTGAGG 59.830 37.037 0.00 0.00 0.00 3.86
3952 4840 6.405278 AGTTGAGGTTTTGGTAAGATTTGG 57.595 37.500 0.00 0.00 0.00 3.28
3964 4852 9.844257 TTTGGTAAGATTTGGTTTGATTTGATT 57.156 25.926 0.00 0.00 0.00 2.57
3974 4862 7.887996 TGGTTTGATTTGATTGAGTTAATGC 57.112 32.000 0.00 0.00 0.00 3.56
3976 4864 8.095792 TGGTTTGATTTGATTGAGTTAATGCAT 58.904 29.630 0.00 0.00 0.00 3.96
3989 4877 6.015603 TGAGTTAATGCATGATGTGGTTTTGA 60.016 34.615 0.00 0.00 0.00 2.69
4001 4889 5.570234 TGTGGTTTTGAGAAAGTACCAAC 57.430 39.130 0.00 0.00 0.00 3.77
4036 4924 9.899226 GATTATTCCAAGTTACTCCATTTATGC 57.101 33.333 0.00 0.00 0.00 3.14
4054 4942 2.131183 TGCTTTTATTTTGTGCGGCAC 58.869 42.857 25.55 25.55 34.56 5.01
4068 4956 2.027561 TGCGGCACTGGTTAAGATTACT 60.028 45.455 0.00 0.00 0.00 2.24
4097 4985 3.622630 TCAACAGGAAACCGAAAAGGAA 58.377 40.909 0.00 0.00 45.00 3.36
4103 4991 2.556782 GGAAACCGAAAAGGAAGGGGAT 60.557 50.000 0.00 0.00 45.00 3.85
4105 4993 4.338012 GAAACCGAAAAGGAAGGGGATTA 58.662 43.478 0.00 0.00 45.00 1.75
4158 5046 3.199289 CGAACCTACCAACTCCCCTTTAT 59.801 47.826 0.00 0.00 0.00 1.40
4159 5047 4.682589 CGAACCTACCAACTCCCCTTTATC 60.683 50.000 0.00 0.00 0.00 1.75
4169 5064 2.102588 CTCCCCTTTATCAGTACCGGTG 59.897 54.545 19.93 0.00 0.00 4.94
4182 5077 1.396653 ACCGGTGGGTCTATTCTACG 58.603 55.000 6.12 0.00 46.01 3.51
4333 5236 4.406649 CCTTAAAATGCAACCATCCATCCT 59.593 41.667 0.00 0.00 0.00 3.24
4348 5251 6.939163 CCATCCATCCTATTTTTACTCTGGAG 59.061 42.308 0.00 0.00 35.20 3.86
4458 5373 3.916544 CATCTCGCAGCCCCGCTA 61.917 66.667 0.00 0.00 36.40 4.26
4508 5423 2.422127 CGGTGCTGGAATCGGTATTTTT 59.578 45.455 0.00 0.00 0.00 1.94
4510 5425 3.192633 GGTGCTGGAATCGGTATTTTTGT 59.807 43.478 0.00 0.00 0.00 2.83
4514 5429 4.636206 GCTGGAATCGGTATTTTTGTCTCT 59.364 41.667 0.00 0.00 0.00 3.10
4518 5433 5.642063 GGAATCGGTATTTTTGTCTCTGACA 59.358 40.000 0.00 0.00 41.09 3.58
4525 5440 1.954146 TTGTCTCTGACAACGCCGC 60.954 57.895 8.81 0.00 45.88 6.53
4545 5460 1.582968 GTCGTGTAACTCTGCCCGA 59.417 57.895 0.00 0.00 31.75 5.14
4569 5484 1.003223 CCACGAGGTTTGTTTTCGACC 60.003 52.381 0.00 0.00 37.73 4.79
4634 5549 1.515954 CAAGCCCTACACCGACGAT 59.484 57.895 0.00 0.00 0.00 3.73
4638 5553 2.278596 CCTACACCGACGATGGCG 60.279 66.667 0.00 0.00 44.79 5.69
4657 5572 1.468736 CGCCGGAACCACTAAGTAGAC 60.469 57.143 5.05 0.00 0.00 2.59
4681 5608 1.113517 GTCGCTGCCCCTACATCCTA 61.114 60.000 0.00 0.00 0.00 2.94
4754 5681 1.913262 TGTCGCTGGTGTCCTCCAT 60.913 57.895 0.00 0.00 36.84 3.41
4759 5686 2.284625 TGGTGTCCTCCATCGCCT 60.285 61.111 0.00 0.00 35.52 5.52
4813 5740 3.141488 CTCTCCGACCCCGTCCAG 61.141 72.222 0.00 0.00 0.00 3.86
4914 5855 8.106462 TGGATCATTAAGTTCTCCAATGTGTAA 58.894 33.333 0.00 0.00 33.19 2.41
4976 5923 2.741228 CGCAGGAGGAAGAAGAAGATGG 60.741 54.545 0.00 0.00 0.00 3.51
5036 5985 2.467880 AGATTTTAGGAGACCGAGGCA 58.532 47.619 0.00 0.00 0.00 4.75
5051 6002 2.790433 GAGGCATGGTTCAGTTTGGTA 58.210 47.619 0.00 0.00 0.00 3.25
5168 6123 2.654863 GATTCCGGACACATTGGGATT 58.345 47.619 1.83 0.00 0.00 3.01
5191 6146 5.195001 TCTTCAACACCATTGTAAAAGCC 57.805 39.130 0.00 0.00 33.55 4.35
5218 6174 7.151308 TGGACAAACATGATAATTGGTTTCAC 58.849 34.615 0.00 0.00 31.57 3.18
5299 6260 2.698274 TGCGAGTCCTTGCTTATGGATA 59.302 45.455 7.97 0.00 40.60 2.59
5370 6334 5.393569 CCTTGAGTGTGTGAGACGATTCTAT 60.394 44.000 0.00 0.00 29.47 1.98
5478 6442 0.394899 GAGGTTGGCCAGGGATCTTG 60.395 60.000 5.11 0.00 37.19 3.02
5479 6443 1.380380 GGTTGGCCAGGGATCTTGG 60.380 63.158 5.11 11.14 34.09 3.61
5480 6444 1.691219 GTTGGCCAGGGATCTTGGA 59.309 57.895 17.52 0.00 0.00 3.53
5481 6445 0.039618 GTTGGCCAGGGATCTTGGAA 59.960 55.000 17.52 4.57 0.00 3.53
5482 6446 0.332632 TTGGCCAGGGATCTTGGAAG 59.667 55.000 17.52 0.00 0.00 3.46
5498 6462 4.387026 TGGAAGTTGGATCCATTGACTT 57.613 40.909 24.16 24.16 41.98 3.01
5519 6483 8.814931 TGACTTTATGAATTGGACATGGAAAAT 58.185 29.630 0.00 0.00 0.00 1.82
5610 6582 2.981081 TGCATCCCATGATCAGTGGATA 59.019 45.455 22.03 10.21 39.12 2.59
5614 6586 3.601520 TCCCATGATCAGTGGATATGGT 58.398 45.455 19.73 0.00 39.12 3.55
5636 6608 0.386838 GCATACTTTGGGATGCCTGC 59.613 55.000 4.35 0.35 42.18 4.85
5816 6806 1.891150 GACAGTCCACCGTCCTAAAGA 59.109 52.381 0.00 0.00 0.00 2.52
5866 6865 6.723298 ATCTACGAGAAAGGATGTTGAGAT 57.277 37.500 0.00 0.00 0.00 2.75
5867 6866 7.825331 ATCTACGAGAAAGGATGTTGAGATA 57.175 36.000 0.00 0.00 0.00 1.98
5873 6872 6.238049 CGAGAAAGGATGTTGAGATAGCTTTG 60.238 42.308 0.00 0.00 0.00 2.77
5953 6957 3.134262 CGGATCCTATGGCAGATCATGAT 59.866 47.826 8.25 8.25 40.59 2.45
6080 7097 4.442893 ACCGAAATAGGATCGAAGCATTCA 60.443 41.667 0.00 0.00 42.76 2.57
6082 7099 6.518369 ACCGAAATAGGATCGAAGCATTCATA 60.518 38.462 0.00 0.00 42.76 2.15
6114 8855 4.683832 CGAAGGATTGATAACCGAGAAGT 58.316 43.478 0.00 0.00 0.00 3.01
6172 8913 2.778299 TGGTGACTTCATACCACTTGC 58.222 47.619 0.00 0.00 41.80 4.01
6174 8915 3.580895 TGGTGACTTCATACCACTTGCTA 59.419 43.478 0.00 0.00 41.80 3.49
6211 8952 9.927668 CATCATGTTTATTTGGGTTCTTAGTTT 57.072 29.630 0.00 0.00 0.00 2.66
6220 8961 8.721133 ATTTGGGTTCTTAGTTTATTTGGACT 57.279 30.769 0.00 0.00 0.00 3.85
6408 9153 4.507388 GCTGATCTGCTAGATGAAGACAAC 59.493 45.833 16.60 0.00 34.53 3.32
6416 11907 5.827797 TGCTAGATGAAGACAACTTTTTGGT 59.172 36.000 0.00 0.00 37.00 3.67
6431 11922 5.827797 ACTTTTTGGTGATACTCTTTCAGCA 59.172 36.000 1.76 1.76 46.56 4.41
6454 11946 0.767998 TGGTGTGCCCATCAACTACA 59.232 50.000 0.00 0.00 38.72 2.74
6497 11995 6.857777 AAAAATCTCAAGATCTATCGGCTG 57.142 37.500 0.00 0.00 32.75 4.85
6506 12004 1.872388 TCTATCGGCTGAGTCTCTCG 58.128 55.000 0.00 3.32 32.35 4.04
6510 12008 2.477176 CGGCTGAGTCTCTCGGAGG 61.477 68.421 4.96 0.00 39.05 4.30
6518 12016 2.494073 GAGTCTCTCGGAGGTGTTCATT 59.506 50.000 4.96 0.00 0.00 2.57
6561 12059 2.040947 TGTTCATAGGGGTGATTGTGCA 59.959 45.455 0.00 0.00 0.00 4.57
6563 12061 2.934887 TCATAGGGGTGATTGTGCATG 58.065 47.619 0.00 0.00 0.00 4.06
6566 12064 1.216178 GGGGTGATTGTGCATGTGC 59.784 57.895 0.00 0.00 42.50 4.57
6589 12087 4.330894 CGTGTGATCATCTGCATTTGTACT 59.669 41.667 0.00 0.00 0.00 2.73
6590 12088 5.566623 GTGTGATCATCTGCATTTGTACTG 58.433 41.667 0.00 0.00 0.00 2.74
6599 12097 3.291584 TGCATTTGTACTGTGTTTCCCA 58.708 40.909 0.00 0.00 0.00 4.37
6651 12150 3.512219 TTAATGGTTGGAAGGGAACGT 57.488 42.857 0.00 0.00 0.00 3.99
6669 12168 5.578336 GGAACGTTACACCAATTAGTAGTCC 59.422 44.000 5.39 0.00 0.00 3.85
6674 12173 6.532657 CGTTACACCAATTAGTAGTCCGAAAT 59.467 38.462 0.00 0.00 0.00 2.17
6680 12179 3.965379 TTAGTAGTCCGAAATGCACCA 57.035 42.857 0.00 0.00 0.00 4.17
6684 12183 3.502211 AGTAGTCCGAAATGCACCAAAAG 59.498 43.478 0.00 0.00 0.00 2.27
6685 12184 2.582052 AGTCCGAAATGCACCAAAAGA 58.418 42.857 0.00 0.00 0.00 2.52
6773 12272 0.763035 AGGAAACGGTGGCTGTAAGT 59.237 50.000 0.00 0.00 35.30 2.24
7025 12524 4.470602 TCAACTGACTTCAGGTAGACAGA 58.529 43.478 10.94 0.00 43.10 3.41
7029 12528 4.265893 CTGACTTCAGGTAGACAGAGCTA 58.734 47.826 0.00 0.00 39.31 3.32
7054 12553 5.529800 GTCCAAACTAAAACTTGCCAGACTA 59.470 40.000 0.00 0.00 0.00 2.59
7062 12561 8.837389 ACTAAAACTTGCCAGACTAACTTTAAG 58.163 33.333 0.00 0.00 0.00 1.85
7177 12676 5.798934 GCAAAGACATTCTCTGTAAGCAATG 59.201 40.000 0.00 0.00 38.54 2.82
7238 12737 2.038863 TATTGACCACCCTCCACTGT 57.961 50.000 0.00 0.00 0.00 3.55
7239 12738 2.038863 ATTGACCACCCTCCACTGTA 57.961 50.000 0.00 0.00 0.00 2.74
7245 12753 1.152118 ACCCTCCACTGTACAGGCA 60.152 57.895 26.12 8.91 0.00 4.75
7283 12791 1.680735 ACAGAAACAAAGCGGCAATCA 59.319 42.857 1.45 0.00 0.00 2.57
7348 12856 5.130350 TCACATTCATGATCATGCAGATGT 58.870 37.500 27.91 27.91 37.00 3.06
7376 12884 0.038251 CAGTCCAGTAAGCTCGCACA 60.038 55.000 0.00 0.00 0.00 4.57
7536 13045 6.311200 ACATATACCTTTTGTACCGTTCGTTC 59.689 38.462 0.00 0.00 30.62 3.95
7546 13055 1.190763 ACCGTTCGTTCGTTCAAATCG 59.809 47.619 0.00 0.00 0.00 3.34
7549 13058 2.886240 CGTTCGTTCGTTCAAATCGTTC 59.114 45.455 0.00 0.00 0.00 3.95
7567 13076 6.859420 TCGTTCTCAACAAATTCTCATTGA 57.141 33.333 0.00 0.00 0.00 2.57
7579 13089 9.048446 ACAAATTCTCATTGATTCCTTTTTGTG 57.952 29.630 0.00 0.00 33.67 3.33
7693 13203 5.000012 ACTTCAATGTACGTCTCATCCTC 58.000 43.478 0.00 0.00 0.00 3.71
7727 13237 6.741992 AATCTTCAGATTGCGTGTTTGATA 57.258 33.333 1.04 0.00 42.66 2.15
7811 13321 0.251354 GCTTCTGCTGGAGGATGTGA 59.749 55.000 0.52 0.00 36.03 3.58
7863 13373 1.879796 GCTTTGCTAGCGGCCATATCT 60.880 52.381 10.77 0.00 40.71 1.98
7952 13462 8.114905 GGATATAAAGAGACACGTTTTGTAAGC 58.885 37.037 0.00 0.00 39.17 3.09
7987 13497 5.750067 GGTTTAACAGAGGCAATGCATAATG 59.250 40.000 7.79 5.27 0.00 1.90
8007 13517 1.576356 CGTAAGCATCCCTTCTGAGC 58.424 55.000 0.00 0.00 34.95 4.26
8008 13518 1.137872 CGTAAGCATCCCTTCTGAGCT 59.862 52.381 0.00 0.00 37.08 4.09
8009 13519 2.801342 CGTAAGCATCCCTTCTGAGCTC 60.801 54.545 6.82 6.82 33.83 4.09
8010 13520 0.177604 AAGCATCCCTTCTGAGCTCG 59.822 55.000 9.64 4.19 33.83 5.03
8011 13521 0.685785 AGCATCCCTTCTGAGCTCGA 60.686 55.000 9.64 6.70 0.00 4.04
8012 13522 0.249405 GCATCCCTTCTGAGCTCGAG 60.249 60.000 8.45 8.45 0.00 4.04
8013 13523 0.249405 CATCCCTTCTGAGCTCGAGC 60.249 60.000 30.01 30.01 42.49 5.03
8035 13545 5.874895 CTCAAATGAGCTCAGATGAACAA 57.125 39.130 25.59 11.08 35.13 2.83
8040 13550 6.782298 AATGAGCTCAGATGAACAATATCG 57.218 37.500 22.96 0.00 0.00 2.92
8059 13569 2.035832 TCGTGATGCGGATGACATATGT 59.964 45.455 8.43 8.43 41.72 2.29
8122 13634 0.179129 GGAGCATTTTGTCGCCATGG 60.179 55.000 7.63 7.63 0.00 3.66
8142 13656 1.256812 CGAAAAGAAAGGGGTGCCAT 58.743 50.000 0.00 0.00 0.00 4.40
8161 13675 3.636300 CCATGGCAAGGAATCCGAAAATA 59.364 43.478 1.66 0.00 0.00 1.40
8355 13872 4.277672 AGCAACAGATACATGCAATCATCC 59.722 41.667 10.38 0.00 42.45 3.51
8504 14021 5.103940 TCGTAGGGGAAGTAGTGGTACTATT 60.104 44.000 0.00 0.00 38.66 1.73
8536 14053 2.163211 GACGGTAGTGGAAGTAGTGGTC 59.837 54.545 0.00 0.00 0.00 4.02
8673 14190 3.319755 CGACGGTAGTGGTACATGTTTT 58.680 45.455 2.30 0.00 44.52 2.43
8714 14231 1.718396 GGTAGCGGTACTTGGTGAAC 58.282 55.000 22.84 1.51 0.00 3.18
8762 14300 2.079158 GTAAGGGGTACTTGGCGTTTC 58.921 52.381 0.00 0.00 40.37 2.78
8826 14364 0.892358 ACAAGAGCGTCACCGGACTA 60.892 55.000 9.46 0.00 42.05 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 1.040339 ACTCGGTGCTTGCCCAAAAA 61.040 50.000 0.00 0.00 0.00 1.94
204 205 0.036765 CGGATCCGGTTGGTCTTGAA 60.037 55.000 26.95 0.00 36.30 2.69
213 214 2.904178 GATTTGGGGCGGATCCGGTT 62.904 60.000 33.98 0.00 40.19 4.44
393 404 1.627017 ATCCATCCCCTCCCTCCCTT 61.627 60.000 0.00 0.00 0.00 3.95
407 419 1.692411 GCGGGCCTTTTTCTATCCAT 58.308 50.000 0.84 0.00 0.00 3.41
479 492 1.271325 TGAAACAGACACCATGCGGAT 60.271 47.619 0.00 0.00 35.59 4.18
502 515 1.002251 CCAAGTTTACGCCGCTTTTGA 60.002 47.619 0.00 0.00 0.00 2.69
514 528 1.272425 CCCATCTGTGGCCCAAGTTTA 60.272 52.381 0.00 0.00 44.62 2.01
536 550 0.653636 GTCGTTTTGTGTCCGCTTCA 59.346 50.000 0.00 0.00 0.00 3.02
571 587 1.853114 GAGACGACTCAGTGCGTGGA 61.853 60.000 10.08 0.00 41.34 4.02
574 590 1.783031 AACGAGACGACTCAGTGCGT 61.783 55.000 14.99 4.39 42.72 5.24
578 594 1.001597 GGACAAACGAGACGACTCAGT 60.002 52.381 14.99 10.36 42.72 3.41
582 598 0.383231 AACGGACAAACGAGACGACT 59.617 50.000 0.00 0.00 37.61 4.18
584 600 1.925229 AAAACGGACAAACGAGACGA 58.075 45.000 0.00 0.00 37.61 4.20
629 645 3.599285 TTAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
630 646 1.745489 CTTAGGCCAACTCCACCGC 60.745 63.158 5.01 0.00 0.00 5.68
631 647 0.036306 AACTTAGGCCAACTCCACCG 59.964 55.000 5.01 0.00 0.00 4.94
632 648 1.073284 TGAACTTAGGCCAACTCCACC 59.927 52.381 5.01 0.00 0.00 4.61
633 649 2.427506 CTGAACTTAGGCCAACTCCAC 58.572 52.381 5.01 0.00 0.00 4.02
634 650 1.271379 GCTGAACTTAGGCCAACTCCA 60.271 52.381 5.01 0.00 0.00 3.86
635 651 1.271379 TGCTGAACTTAGGCCAACTCC 60.271 52.381 5.01 0.00 0.00 3.85
636 652 2.185004 TGCTGAACTTAGGCCAACTC 57.815 50.000 5.01 0.00 0.00 3.01
637 653 2.716217 GATGCTGAACTTAGGCCAACT 58.284 47.619 5.01 0.00 0.00 3.16
638 654 1.398390 CGATGCTGAACTTAGGCCAAC 59.602 52.381 5.01 0.00 0.00 3.77
639 655 1.737838 CGATGCTGAACTTAGGCCAA 58.262 50.000 5.01 0.00 0.00 4.52
640 656 0.744414 GCGATGCTGAACTTAGGCCA 60.744 55.000 5.01 0.00 0.00 5.36
641 657 1.440145 GGCGATGCTGAACTTAGGCC 61.440 60.000 0.00 0.00 0.00 5.19
642 658 0.462759 AGGCGATGCTGAACTTAGGC 60.463 55.000 0.00 0.00 0.00 3.93
643 659 1.293924 CAGGCGATGCTGAACTTAGG 58.706 55.000 0.00 0.00 0.00 2.69
644 660 1.662629 CACAGGCGATGCTGAACTTAG 59.337 52.381 0.00 0.00 0.00 2.18
651 667 1.532505 GCAAATACACAGGCGATGCTG 60.533 52.381 0.00 0.00 0.00 4.41
672 688 3.844943 GCAGCGCCACGATTTAAATAGAC 60.845 47.826 14.33 3.76 0.00 2.59
904 925 2.224606 TGGTTCTTTCTTGCAGCAGAG 58.775 47.619 0.00 0.00 0.00 3.35
987 1008 1.422531 CCTCCATTCTCCTCTCCTGG 58.577 60.000 0.00 0.00 0.00 4.45
1064 1085 3.499737 GCGGCATGAACGTCCTGG 61.500 66.667 11.10 0.00 0.00 4.45
1196 1217 5.011090 TGATGTTAGAGGATTCACTTCCG 57.989 43.478 0.00 0.00 40.94 4.30
1197 1218 6.644347 TCTTGATGTTAGAGGATTCACTTCC 58.356 40.000 0.00 0.00 35.90 3.46
1198 1219 8.037758 TCTTCTTGATGTTAGAGGATTCACTTC 58.962 37.037 0.00 0.00 0.00 3.01
1199 1220 7.911651 TCTTCTTGATGTTAGAGGATTCACTT 58.088 34.615 0.00 0.00 0.00 3.16
1200 1221 7.398618 TCTCTTCTTGATGTTAGAGGATTCACT 59.601 37.037 0.00 0.00 35.84 3.41
1201 1222 7.551585 TCTCTTCTTGATGTTAGAGGATTCAC 58.448 38.462 0.00 0.00 35.84 3.18
1202 1223 7.724490 TCTCTTCTTGATGTTAGAGGATTCA 57.276 36.000 0.00 0.00 35.84 2.57
1203 1224 8.257306 ACTTCTCTTCTTGATGTTAGAGGATTC 58.743 37.037 0.00 0.00 35.84 2.52
1204 1225 8.144862 ACTTCTCTTCTTGATGTTAGAGGATT 57.855 34.615 0.00 0.00 35.84 3.01
1205 1226 7.398618 TGACTTCTCTTCTTGATGTTAGAGGAT 59.601 37.037 0.00 0.00 35.84 3.24
1206 1227 6.721668 TGACTTCTCTTCTTGATGTTAGAGGA 59.278 38.462 0.00 0.00 35.84 3.71
1207 1228 6.811170 GTGACTTCTCTTCTTGATGTTAGAGG 59.189 42.308 0.00 0.00 35.84 3.69
1208 1229 6.811170 GGTGACTTCTCTTCTTGATGTTAGAG 59.189 42.308 0.00 0.00 36.35 2.43
1209 1230 6.495181 AGGTGACTTCTCTTCTTGATGTTAGA 59.505 38.462 0.00 0.00 37.44 2.10
1210 1231 6.696411 AGGTGACTTCTCTTCTTGATGTTAG 58.304 40.000 0.00 0.00 37.44 2.34
1211 1232 6.672266 AGGTGACTTCTCTTCTTGATGTTA 57.328 37.500 0.00 0.00 37.44 2.41
1212 1233 5.559148 AGGTGACTTCTCTTCTTGATGTT 57.441 39.130 0.00 0.00 37.44 2.71
1213 1234 6.672266 TTAGGTGACTTCTCTTCTTGATGT 57.328 37.500 0.00 0.00 43.67 3.06
1214 1235 5.580297 GCTTAGGTGACTTCTCTTCTTGATG 59.420 44.000 0.00 0.00 43.67 3.07
1215 1236 5.483583 AGCTTAGGTGACTTCTCTTCTTGAT 59.516 40.000 0.00 0.00 43.67 2.57
1216 1237 4.835615 AGCTTAGGTGACTTCTCTTCTTGA 59.164 41.667 0.00 0.00 43.67 3.02
1217 1238 5.146010 AGCTTAGGTGACTTCTCTTCTTG 57.854 43.478 0.00 0.00 43.67 3.02
1218 1239 5.775701 TGTAGCTTAGGTGACTTCTCTTCTT 59.224 40.000 0.00 0.00 43.67 2.52
1219 1240 5.326069 TGTAGCTTAGGTGACTTCTCTTCT 58.674 41.667 0.00 0.00 43.67 2.85
1220 1241 5.646577 TGTAGCTTAGGTGACTTCTCTTC 57.353 43.478 0.00 0.00 43.67 2.87
1221 1242 6.613153 ATTGTAGCTTAGGTGACTTCTCTT 57.387 37.500 0.00 0.00 43.67 2.85
1222 1243 6.439058 AGAATTGTAGCTTAGGTGACTTCTCT 59.561 38.462 0.00 0.00 43.67 3.10
1223 1244 6.635755 AGAATTGTAGCTTAGGTGACTTCTC 58.364 40.000 0.00 0.00 43.67 2.87
1224 1245 6.439058 AGAGAATTGTAGCTTAGGTGACTTCT 59.561 38.462 0.00 0.00 43.67 2.85
1225 1246 6.635755 AGAGAATTGTAGCTTAGGTGACTTC 58.364 40.000 0.00 0.00 43.67 3.01
1226 1247 6.613153 AGAGAATTGTAGCTTAGGTGACTT 57.387 37.500 0.00 0.00 43.67 3.01
1228 1249 7.548967 AGTTAGAGAATTGTAGCTTAGGTGAC 58.451 38.462 0.00 0.00 0.00 3.67
1229 1250 7.719871 AGTTAGAGAATTGTAGCTTAGGTGA 57.280 36.000 0.00 0.00 0.00 4.02
1230 1251 8.779354 AAAGTTAGAGAATTGTAGCTTAGGTG 57.221 34.615 0.00 0.00 0.00 4.00
1231 1252 9.438228 GAAAAGTTAGAGAATTGTAGCTTAGGT 57.562 33.333 0.00 0.00 0.00 3.08
1232 1253 9.660180 AGAAAAGTTAGAGAATTGTAGCTTAGG 57.340 33.333 0.00 0.00 0.00 2.69
1235 1256 9.785982 AAGAGAAAAGTTAGAGAATTGTAGCTT 57.214 29.630 0.00 0.00 0.00 3.74
1236 1257 9.785982 AAAGAGAAAAGTTAGAGAATTGTAGCT 57.214 29.630 0.00 0.00 0.00 3.32
1240 1261 9.396022 TGTGAAAGAGAAAAGTTAGAGAATTGT 57.604 29.630 0.00 0.00 0.00 2.71
1243 1264 9.225436 GGATGTGAAAGAGAAAAGTTAGAGAAT 57.775 33.333 0.00 0.00 0.00 2.40
1244 1265 8.210946 TGGATGTGAAAGAGAAAAGTTAGAGAA 58.789 33.333 0.00 0.00 0.00 2.87
1245 1266 7.735917 TGGATGTGAAAGAGAAAAGTTAGAGA 58.264 34.615 0.00 0.00 0.00 3.10
1246 1267 7.969536 TGGATGTGAAAGAGAAAAGTTAGAG 57.030 36.000 0.00 0.00 0.00 2.43
1249 1270 9.958180 TCATATGGATGTGAAAGAGAAAAGTTA 57.042 29.630 2.13 0.00 34.41 2.24
1250 1271 8.868522 TCATATGGATGTGAAAGAGAAAAGTT 57.131 30.769 2.13 0.00 34.41 2.66
1251 1272 9.471702 AATCATATGGATGTGAAAGAGAAAAGT 57.528 29.630 2.13 0.00 36.02 2.66
1255 1276 9.565090 CCTTAATCATATGGATGTGAAAGAGAA 57.435 33.333 2.13 0.00 36.02 2.87
1256 1277 7.663081 GCCTTAATCATATGGATGTGAAAGAGA 59.337 37.037 2.13 0.00 36.02 3.10
1257 1278 7.664731 AGCCTTAATCATATGGATGTGAAAGAG 59.335 37.037 2.13 0.00 36.02 2.85
1258 1279 7.520798 AGCCTTAATCATATGGATGTGAAAGA 58.479 34.615 2.13 0.00 36.02 2.52
1259 1280 7.756395 AGCCTTAATCATATGGATGTGAAAG 57.244 36.000 2.13 0.00 36.02 2.62
1260 1281 9.639563 TTTAGCCTTAATCATATGGATGTGAAA 57.360 29.630 2.13 0.00 36.02 2.69
1261 1282 9.639563 TTTTAGCCTTAATCATATGGATGTGAA 57.360 29.630 2.13 0.00 36.02 3.18
1262 1283 9.812347 ATTTTAGCCTTAATCATATGGATGTGA 57.188 29.630 2.13 0.00 36.02 3.58
1263 1284 9.850628 CATTTTAGCCTTAATCATATGGATGTG 57.149 33.333 2.13 0.00 36.02 3.21
1264 1285 9.812347 TCATTTTAGCCTTAATCATATGGATGT 57.188 29.630 2.13 0.00 36.02 3.06
1267 1288 9.866655 AAGTCATTTTAGCCTTAATCATATGGA 57.133 29.630 2.13 0.00 0.00 3.41
1268 1289 9.903682 CAAGTCATTTTAGCCTTAATCATATGG 57.096 33.333 2.13 0.00 0.00 2.74
1382 1403 9.121658 TGTGTGGTTACTGTTCATGTAAATAAA 57.878 29.630 0.00 0.00 32.58 1.40
1383 1404 8.561212 GTGTGTGGTTACTGTTCATGTAAATAA 58.439 33.333 0.00 0.00 32.58 1.40
1384 1405 7.715686 TGTGTGTGGTTACTGTTCATGTAAATA 59.284 33.333 0.00 0.00 32.58 1.40
1385 1406 6.544197 TGTGTGTGGTTACTGTTCATGTAAAT 59.456 34.615 0.00 0.00 32.58 1.40
1386 1407 5.880887 TGTGTGTGGTTACTGTTCATGTAAA 59.119 36.000 0.00 0.00 32.58 2.01
1387 1408 5.429130 TGTGTGTGGTTACTGTTCATGTAA 58.571 37.500 0.00 0.00 0.00 2.41
1388 1409 5.024785 TGTGTGTGGTTACTGTTCATGTA 57.975 39.130 0.00 0.00 0.00 2.29
1389 1410 3.879998 TGTGTGTGGTTACTGTTCATGT 58.120 40.909 0.00 0.00 0.00 3.21
1390 1411 6.370593 GTTATGTGTGTGGTTACTGTTCATG 58.629 40.000 0.00 0.00 0.00 3.07
1391 1412 5.472137 GGTTATGTGTGTGGTTACTGTTCAT 59.528 40.000 0.00 0.00 0.00 2.57
1392 1413 4.817464 GGTTATGTGTGTGGTTACTGTTCA 59.183 41.667 0.00 0.00 0.00 3.18
1393 1414 5.049680 CAGGTTATGTGTGTGGTTACTGTTC 60.050 44.000 0.00 0.00 0.00 3.18
1394 1415 4.819630 CAGGTTATGTGTGTGGTTACTGTT 59.180 41.667 0.00 0.00 0.00 3.16
1395 1416 4.385825 CAGGTTATGTGTGTGGTTACTGT 58.614 43.478 0.00 0.00 0.00 3.55
1396 1417 3.188460 GCAGGTTATGTGTGTGGTTACTG 59.812 47.826 0.00 0.00 0.00 2.74
1397 1418 3.072476 AGCAGGTTATGTGTGTGGTTACT 59.928 43.478 0.00 0.00 0.00 2.24
1398 1419 3.408634 AGCAGGTTATGTGTGTGGTTAC 58.591 45.455 0.00 0.00 0.00 2.50
1399 1420 3.780804 AGCAGGTTATGTGTGTGGTTA 57.219 42.857 0.00 0.00 0.00 2.85
1400 1421 2.656947 AGCAGGTTATGTGTGTGGTT 57.343 45.000 0.00 0.00 0.00 3.67
1401 1422 2.370519 TGTAGCAGGTTATGTGTGTGGT 59.629 45.455 0.00 0.00 0.00 4.16
1402 1423 3.002791 CTGTAGCAGGTTATGTGTGTGG 58.997 50.000 0.00 0.00 0.00 4.17
1403 1424 3.664107 ACTGTAGCAGGTTATGTGTGTG 58.336 45.455 1.08 0.00 35.51 3.82
1404 1425 4.770531 TCTACTGTAGCAGGTTATGTGTGT 59.229 41.667 9.98 0.00 35.51 3.72
1405 1426 5.324784 TCTACTGTAGCAGGTTATGTGTG 57.675 43.478 9.98 0.00 35.51 3.82
1406 1427 7.655521 TTATCTACTGTAGCAGGTTATGTGT 57.344 36.000 9.98 0.00 35.51 3.72
1425 1446 9.273016 ACGCTGTAGCAAATAATGTAATTATCT 57.727 29.630 4.59 0.00 44.23 1.98
1426 1447 9.530129 GACGCTGTAGCAAATAATGTAATTATC 57.470 33.333 4.59 0.00 44.23 1.75
1427 1448 9.273016 AGACGCTGTAGCAAATAATGTAATTAT 57.727 29.630 4.59 0.00 45.74 1.28
1428 1449 8.657074 AGACGCTGTAGCAAATAATGTAATTA 57.343 30.769 4.59 0.00 41.57 1.40
1429 1450 7.495934 AGAGACGCTGTAGCAAATAATGTAATT 59.504 33.333 4.59 0.00 42.21 1.40
1430 1451 6.986817 AGAGACGCTGTAGCAAATAATGTAAT 59.013 34.615 4.59 0.00 42.21 1.89
1431 1452 6.255670 CAGAGACGCTGTAGCAAATAATGTAA 59.744 38.462 4.59 0.00 42.21 2.41
1432 1453 5.748630 CAGAGACGCTGTAGCAAATAATGTA 59.251 40.000 4.59 0.00 42.21 2.29
1433 1454 4.568359 CAGAGACGCTGTAGCAAATAATGT 59.432 41.667 4.59 0.00 42.21 2.71
1434 1455 4.805719 TCAGAGACGCTGTAGCAAATAATG 59.194 41.667 6.08 0.00 45.14 1.90
1435 1456 4.806247 GTCAGAGACGCTGTAGCAAATAAT 59.194 41.667 6.08 0.00 45.14 1.28
1436 1457 4.082190 AGTCAGAGACGCTGTAGCAAATAA 60.082 41.667 6.08 0.00 45.14 1.40
1437 1458 3.444034 AGTCAGAGACGCTGTAGCAAATA 59.556 43.478 6.08 0.00 45.14 1.40
1438 1459 2.232452 AGTCAGAGACGCTGTAGCAAAT 59.768 45.455 6.08 0.00 45.14 2.32
1439 1460 1.613925 AGTCAGAGACGCTGTAGCAAA 59.386 47.619 6.08 0.00 45.14 3.68
1440 1461 1.248486 AGTCAGAGACGCTGTAGCAA 58.752 50.000 6.08 0.00 45.14 3.91
1441 1462 1.248486 AAGTCAGAGACGCTGTAGCA 58.752 50.000 6.08 0.00 45.14 3.49
1442 1463 2.255316 GAAAGTCAGAGACGCTGTAGC 58.745 52.381 6.08 0.00 45.14 3.58
1443 1464 2.490115 AGGAAAGTCAGAGACGCTGTAG 59.510 50.000 6.08 0.00 45.14 2.74
1444 1465 2.515854 AGGAAAGTCAGAGACGCTGTA 58.484 47.619 6.08 0.00 45.14 2.74
1445 1466 1.333177 AGGAAAGTCAGAGACGCTGT 58.667 50.000 6.08 0.00 45.14 4.40
1446 1467 2.029470 AGAAGGAAAGTCAGAGACGCTG 60.029 50.000 0.00 0.00 46.31 5.18
1447 1468 2.243810 AGAAGGAAAGTCAGAGACGCT 58.756 47.619 0.00 0.00 37.67 5.07
1448 1469 2.734276 AGAAGGAAAGTCAGAGACGC 57.266 50.000 0.00 0.00 37.67 5.19
1449 1470 4.372656 ACAAAGAAGGAAAGTCAGAGACG 58.627 43.478 0.00 0.00 37.67 4.18
1450 1471 6.685527 AAACAAAGAAGGAAAGTCAGAGAC 57.314 37.500 0.00 0.00 0.00 3.36
1451 1472 6.404734 GCAAAACAAAGAAGGAAAGTCAGAGA 60.405 38.462 0.00 0.00 0.00 3.10
1452 1473 5.745769 GCAAAACAAAGAAGGAAAGTCAGAG 59.254 40.000 0.00 0.00 0.00 3.35
1453 1474 5.184864 TGCAAAACAAAGAAGGAAAGTCAGA 59.815 36.000 0.00 0.00 0.00 3.27
1454 1475 5.289434 GTGCAAAACAAAGAAGGAAAGTCAG 59.711 40.000 0.00 0.00 0.00 3.51
1455 1476 5.047377 AGTGCAAAACAAAGAAGGAAAGTCA 60.047 36.000 0.00 0.00 0.00 3.41
1456 1477 5.410924 AGTGCAAAACAAAGAAGGAAAGTC 58.589 37.500 0.00 0.00 0.00 3.01
1457 1478 5.405935 AGTGCAAAACAAAGAAGGAAAGT 57.594 34.783 0.00 0.00 0.00 2.66
1458 1479 6.795399 TCTAGTGCAAAACAAAGAAGGAAAG 58.205 36.000 0.00 0.00 0.00 2.62
1459 1480 6.767524 TCTAGTGCAAAACAAAGAAGGAAA 57.232 33.333 0.00 0.00 0.00 3.13
1460 1481 6.959639 ATCTAGTGCAAAACAAAGAAGGAA 57.040 33.333 0.00 0.00 29.80 3.36
1461 1482 6.735694 GCAATCTAGTGCAAAACAAAGAAGGA 60.736 38.462 0.64 0.00 44.29 3.36
1462 1483 5.403466 GCAATCTAGTGCAAAACAAAGAAGG 59.597 40.000 0.64 0.00 44.29 3.46
1463 1484 6.443876 GCAATCTAGTGCAAAACAAAGAAG 57.556 37.500 0.64 0.00 44.29 2.85
1475 1496 2.898705 AGCTACAGTGCAATCTAGTGC 58.101 47.619 0.00 0.00 45.15 4.40
1476 1497 5.046529 CCTAAGCTACAGTGCAATCTAGTG 58.953 45.833 0.00 0.00 34.99 2.74
1477 1498 4.712337 ACCTAAGCTACAGTGCAATCTAGT 59.288 41.667 0.00 0.00 34.99 2.57
1478 1499 5.046529 CACCTAAGCTACAGTGCAATCTAG 58.953 45.833 0.00 0.00 34.99 2.43
1479 1500 4.709886 TCACCTAAGCTACAGTGCAATCTA 59.290 41.667 0.00 0.00 34.99 1.98
1480 1501 3.515502 TCACCTAAGCTACAGTGCAATCT 59.484 43.478 0.00 0.00 34.99 2.40
1481 1502 3.619038 GTCACCTAAGCTACAGTGCAATC 59.381 47.826 0.00 0.00 34.99 2.67
1482 1503 3.261897 AGTCACCTAAGCTACAGTGCAAT 59.738 43.478 0.00 0.00 34.99 3.56
1483 1504 2.632996 AGTCACCTAAGCTACAGTGCAA 59.367 45.455 0.00 0.00 34.99 4.08
1484 1505 2.248248 AGTCACCTAAGCTACAGTGCA 58.752 47.619 5.32 0.00 34.99 4.57
1485 1506 3.320673 AAGTCACCTAAGCTACAGTGC 57.679 47.619 5.32 2.20 0.00 4.40
1486 1507 4.021016 AGGAAAGTCACCTAAGCTACAGTG 60.021 45.833 4.06 4.06 35.84 3.66
1487 1508 4.161102 AGGAAAGTCACCTAAGCTACAGT 58.839 43.478 0.00 0.00 35.84 3.55
1488 1509 4.464597 AGAGGAAAGTCACCTAAGCTACAG 59.535 45.833 0.00 0.00 37.93 2.74
1489 1510 4.417437 AGAGGAAAGTCACCTAAGCTACA 58.583 43.478 0.00 0.00 37.93 2.74
1490 1511 5.408880 AAGAGGAAAGTCACCTAAGCTAC 57.591 43.478 0.00 0.00 37.93 3.58
1491 1512 7.549147 TTAAAGAGGAAAGTCACCTAAGCTA 57.451 36.000 0.00 0.00 37.93 3.32
1492 1513 4.984146 AAAGAGGAAAGTCACCTAAGCT 57.016 40.909 0.00 0.00 37.93 3.74
1493 1514 6.655425 ACATTAAAGAGGAAAGTCACCTAAGC 59.345 38.462 0.00 0.00 37.93 3.09
1494 1515 8.622948 AACATTAAAGAGGAAAGTCACCTAAG 57.377 34.615 0.00 0.00 37.93 2.18
1495 1516 9.720769 CTAACATTAAAGAGGAAAGTCACCTAA 57.279 33.333 0.00 0.00 37.93 2.69
1496 1517 9.096823 TCTAACATTAAAGAGGAAAGTCACCTA 57.903 33.333 0.00 0.00 37.93 3.08
1497 1518 7.974504 TCTAACATTAAAGAGGAAAGTCACCT 58.025 34.615 0.00 0.00 40.80 4.00
1498 1519 8.257830 CTCTAACATTAAAGAGGAAAGTCACC 57.742 38.462 0.00 0.00 36.41 4.02
1508 1529 7.713073 GGAAGTGGATCCTCTAACATTAAAGAG 59.287 40.741 16.52 0.00 39.19 2.85
1509 1530 7.565680 GGAAGTGGATCCTCTAACATTAAAGA 58.434 38.462 16.52 0.00 36.50 2.52
1510 1531 6.480320 CGGAAGTGGATCCTCTAACATTAAAG 59.520 42.308 16.52 0.00 37.34 1.85
1511 1532 6.070424 ACGGAAGTGGATCCTCTAACATTAAA 60.070 38.462 16.52 0.00 46.97 1.52
1512 1533 5.424252 ACGGAAGTGGATCCTCTAACATTAA 59.576 40.000 16.52 0.00 46.97 1.40
1513 1534 4.960469 ACGGAAGTGGATCCTCTAACATTA 59.040 41.667 16.52 0.00 46.97 1.90
1514 1535 3.775316 ACGGAAGTGGATCCTCTAACATT 59.225 43.478 16.52 0.67 46.97 2.71
1515 1536 3.375699 ACGGAAGTGGATCCTCTAACAT 58.624 45.455 16.52 1.06 46.97 2.71
1516 1537 2.816411 ACGGAAGTGGATCCTCTAACA 58.184 47.619 16.52 0.00 46.97 2.41
1535 1556 2.070028 ACCAAACCAAACGTTGCAAAC 58.930 42.857 0.00 0.00 45.31 2.93
1536 1557 2.457366 ACCAAACCAAACGTTGCAAA 57.543 40.000 0.00 0.00 33.93 3.68
1537 1558 2.069273 CAACCAAACCAAACGTTGCAA 58.931 42.857 0.00 0.00 33.93 4.08
1538 1559 1.673033 CCAACCAAACCAAACGTTGCA 60.673 47.619 0.00 0.00 35.38 4.08
1539 1560 1.003108 CCAACCAAACCAAACGTTGC 58.997 50.000 0.00 0.00 35.38 4.17
1540 1561 1.996191 CACCAACCAAACCAAACGTTG 59.004 47.619 0.00 0.00 33.93 4.10
1541 1562 1.673329 GCACCAACCAAACCAAACGTT 60.673 47.619 0.00 0.00 35.70 3.99
1542 1563 0.108567 GCACCAACCAAACCAAACGT 60.109 50.000 0.00 0.00 0.00 3.99
1543 1564 0.808060 GGCACCAACCAAACCAAACG 60.808 55.000 0.00 0.00 0.00 3.60
1630 1653 5.886960 ATTCGAAATCCTTGTTTCAGGAG 57.113 39.130 0.00 0.00 46.60 3.69
1721 1757 4.381505 GGCAGAGTGAGAGAAAGGTAAGAG 60.382 50.000 0.00 0.00 0.00 2.85
1826 1884 0.248743 GGATTGGCATGCACATCACG 60.249 55.000 21.36 0.00 0.00 4.35
1845 1903 5.065090 TGAACATAAAGATTGAGGCGACATG 59.935 40.000 0.00 0.00 0.00 3.21
1905 1964 4.083802 GCAGTACTTTCAGTGCGATTTCTT 60.084 41.667 0.00 0.00 35.89 2.52
1984 2044 1.990060 ACCGTGAGTGGGGAGGATG 60.990 63.158 0.00 0.00 0.00 3.51
2044 2402 7.385752 CAGTGCAATAATTTCTTCATTGGTGTT 59.614 33.333 0.00 0.00 31.68 3.32
2068 2426 5.244626 AGAACAATGGATGGGAAAAGAACAG 59.755 40.000 0.00 0.00 0.00 3.16
2073 2431 5.010922 TCACAAGAACAATGGATGGGAAAAG 59.989 40.000 0.00 0.00 0.00 2.27
2078 2436 4.275810 AGATCACAAGAACAATGGATGGG 58.724 43.478 0.00 0.00 0.00 4.00
2093 2454 1.215382 CGCCAAGACGGAGATCACA 59.785 57.895 0.00 0.00 36.49 3.58
2139 2500 5.034152 TGGAAGAAATCAAATATTTCGCGC 58.966 37.500 0.00 0.00 41.49 6.86
2140 2501 6.912051 TGATGGAAGAAATCAAATATTTCGCG 59.088 34.615 0.00 0.00 41.49 5.87
2212 2573 7.121611 TGTCACGAGACTATAACAGGTAATGAA 59.878 37.037 14.15 0.00 45.20 2.57
2214 2575 6.792326 TGTCACGAGACTATAACAGGTAATG 58.208 40.000 14.15 0.00 45.20 1.90
2288 2652 1.892474 GAAGAGCGGAGAGGAGCATAT 59.108 52.381 0.00 0.00 35.48 1.78
2382 2929 3.374220 ACATTTGTTGTGGATGTGCAG 57.626 42.857 0.00 0.00 37.11 4.41
2426 2973 1.197492 CGCAAGCAACTGTTAGCATGA 59.803 47.619 17.71 0.00 31.63 3.07
2478 3025 5.119694 TGCGCACCATGATTACTTTATGTA 58.880 37.500 5.66 0.00 0.00 2.29
2492 3039 1.509463 CAAATCAGCTGCGCACCAT 59.491 52.632 5.66 0.00 0.00 3.55
2615 3162 6.758416 TGTGCTACATGTTCATAATCTGAGTC 59.242 38.462 2.30 0.00 34.68 3.36
2616 3163 6.643388 TGTGCTACATGTTCATAATCTGAGT 58.357 36.000 2.30 0.00 34.68 3.41
2617 3164 7.543947 TTGTGCTACATGTTCATAATCTGAG 57.456 36.000 2.30 0.00 34.68 3.35
2618 3165 8.510243 AATTGTGCTACATGTTCATAATCTGA 57.490 30.769 16.92 0.00 0.00 3.27
2619 3166 9.016623 CAAATTGTGCTACATGTTCATAATCTG 57.983 33.333 16.92 12.58 0.00 2.90
2620 3167 8.959548 TCAAATTGTGCTACATGTTCATAATCT 58.040 29.630 16.92 6.70 0.00 2.40
2621 3168 9.229784 CTCAAATTGTGCTACATGTTCATAATC 57.770 33.333 16.92 2.90 0.00 1.75
2643 3190 7.300658 CCTACCTAACTTATACTACCCCTCAA 58.699 42.308 0.00 0.00 0.00 3.02
2763 3317 7.392393 GCCTTTTAAATCACTAAAGTGGGAGTA 59.608 37.037 10.11 0.00 45.65 2.59
2764 3318 6.208797 GCCTTTTAAATCACTAAAGTGGGAGT 59.791 38.462 10.11 0.00 45.65 3.85
2766 3320 5.479027 GGCCTTTTAAATCACTAAAGTGGGA 59.521 40.000 10.11 0.00 45.65 4.37
2768 3322 6.590234 AGGCCTTTTAAATCACTAAAGTGG 57.410 37.500 0.00 0.00 45.65 4.00
2789 3446 9.915629 CTGCTACCTCTGTAAAGTAATATTAGG 57.084 37.037 0.00 0.00 0.00 2.69
2860 3517 4.576330 ACAAAGGTTAGCTATCAAGGCT 57.424 40.909 0.00 0.00 43.02 4.58
2875 3532 2.740981 TGCAGCAACACAAAAACAAAGG 59.259 40.909 0.00 0.00 0.00 3.11
2894 3551 2.004583 AATTGTCATGTGCATGCTGC 57.995 45.000 20.33 12.29 45.29 5.25
2985 3645 5.418310 AGTTCAAAACCACGACACTTATG 57.582 39.130 0.00 0.00 0.00 1.90
3003 3663 6.854381 CCAAATAAGTGTCGTGGTTTTAGTTC 59.146 38.462 0.00 0.00 0.00 3.01
3004 3664 6.238814 CCCAAATAAGTGTCGTGGTTTTAGTT 60.239 38.462 0.00 0.00 0.00 2.24
3005 3665 5.239963 CCCAAATAAGTGTCGTGGTTTTAGT 59.760 40.000 0.00 0.00 0.00 2.24
3006 3666 5.335348 CCCCAAATAAGTGTCGTGGTTTTAG 60.335 44.000 0.00 0.00 0.00 1.85
3007 3667 4.519730 CCCCAAATAAGTGTCGTGGTTTTA 59.480 41.667 0.00 0.00 0.00 1.52
3027 3687 1.201424 ATAACACTCCCTTCGTCCCC 58.799 55.000 0.00 0.00 0.00 4.81
3203 3863 0.398696 TGCACCGGTGTAAGGTTCAT 59.601 50.000 33.92 0.00 40.59 2.57
3231 3891 5.461032 AAATCTGGGCAACGTTTTGATAA 57.539 34.783 0.00 0.00 34.24 1.75
3237 3897 3.535280 AACAAAATCTGGGCAACGTTT 57.465 38.095 0.00 0.00 37.60 3.60
3362 4023 8.474831 AGACACAAAAACAAAAGGTTAGCTATT 58.525 29.630 0.00 0.00 39.29 1.73
3424 4086 2.497675 GCATGGAAGGTCACAGACTAGA 59.502 50.000 0.00 0.00 32.47 2.43
3527 4192 3.258872 TCTGAATTGGGCCATTCAAGTTG 59.741 43.478 22.80 15.37 36.49 3.16
3798 4473 7.147742 TGCTGAACCACTAGAATATGTATGTCA 60.148 37.037 0.00 0.00 0.00 3.58
3835 4510 6.816616 TGGTGGGTGTAAGATATATGTCAA 57.183 37.500 2.04 0.00 0.00 3.18
3845 4520 7.931015 AATCTAGAATATGGTGGGTGTAAGA 57.069 36.000 0.00 0.00 0.00 2.10
3899 4574 1.959282 CTTTCCTTGCCTTGTCTTGCT 59.041 47.619 0.00 0.00 0.00 3.91
3901 4576 4.391405 AAACTTTCCTTGCCTTGTCTTG 57.609 40.909 0.00 0.00 0.00 3.02
3905 4580 5.357742 AATCAAAACTTTCCTTGCCTTGT 57.642 34.783 0.00 0.00 0.00 3.16
3933 4745 6.811954 TCAAACCAAATCTTACCAAAACCTC 58.188 36.000 0.00 0.00 0.00 3.85
3936 4748 9.103861 TCAAATCAAACCAAATCTTACCAAAAC 57.896 29.630 0.00 0.00 0.00 2.43
3952 4840 9.142515 TCATGCATTAACTCAATCAAATCAAAC 57.857 29.630 0.00 0.00 0.00 2.93
3964 4852 5.981088 AAACCACATCATGCATTAACTCA 57.019 34.783 0.00 0.00 0.00 3.41
3974 4862 6.016360 TGGTACTTTCTCAAAACCACATCATG 60.016 38.462 0.00 0.00 0.00 3.07
3976 4864 5.441500 TGGTACTTTCTCAAAACCACATCA 58.558 37.500 0.00 0.00 0.00 3.07
4034 4922 2.131183 GTGCCGCACAAAATAAAAGCA 58.869 42.857 18.79 0.00 34.08 3.91
4036 4924 2.730928 CCAGTGCCGCACAAAATAAAAG 59.269 45.455 24.97 3.71 36.74 2.27
4068 4956 6.452494 TTCGGTTTCCTGTTGATTGTTTTA 57.548 33.333 0.00 0.00 0.00 1.52
4119 5007 1.984570 CGCCTCACCTTCTCCCTCA 60.985 63.158 0.00 0.00 0.00 3.86
4127 5015 0.834687 TGGTAGGTTCGCCTCACCTT 60.835 55.000 1.62 0.00 46.86 3.50
4158 5046 2.024655 AGAATAGACCCACCGGTACTGA 60.025 50.000 6.87 0.00 44.88 3.41
4159 5047 2.385803 AGAATAGACCCACCGGTACTG 58.614 52.381 6.87 0.28 44.88 2.74
4182 5077 2.488153 GTTGGTTGCTACAAGGATGGTC 59.512 50.000 0.00 0.00 0.00 4.02
4187 5082 5.298989 TCTTAAGTTGGTTGCTACAAGGA 57.701 39.130 1.63 0.00 0.00 3.36
4189 5084 4.515191 TGCTCTTAAGTTGGTTGCTACAAG 59.485 41.667 1.63 0.00 0.00 3.16
4218 5121 7.386059 CCAAATATAACTTTTGGGGATATGCC 58.614 38.462 4.31 4.31 46.12 4.40
4333 5236 9.383519 CTAAACTGCATCTCCAGAGTAAAAATA 57.616 33.333 0.00 0.00 36.67 1.40
4348 5251 1.748879 TGGCCGCCTAAACTGCATC 60.749 57.895 11.61 0.00 0.00 3.91
4391 5306 4.477975 GACGACGGTCAGAGGCGG 62.478 72.222 9.10 0.00 42.91 6.13
4399 5314 3.036783 CTGAGGGTCGACGACGGTC 62.037 68.421 20.92 18.74 40.21 4.79
4458 5373 3.003763 GAAGGTGCGGGAGAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
4508 5423 2.355837 GCGGCGTTGTCAGAGACA 60.356 61.111 9.37 0.00 41.09 3.41
4510 5425 4.717629 CGGCGGCGTTGTCAGAGA 62.718 66.667 24.74 0.00 0.00 3.10
4518 5433 4.644230 TTACACGACGGCGGCGTT 62.644 61.111 40.77 29.64 40.44 4.84
4523 5438 2.434134 GCAGAGTTACACGACGGCG 61.434 63.158 10.39 10.39 44.79 6.46
4525 5440 1.445582 GGGCAGAGTTACACGACGG 60.446 63.158 0.00 0.00 0.00 4.79
4545 5460 1.265905 GAAAACAAACCTCGTGGCGAT 59.734 47.619 2.76 0.00 34.61 4.58
4634 5549 3.599285 CTTAGTGGTTCCGGCGCCA 62.599 63.158 28.98 4.32 0.00 5.69
4638 5553 1.823610 AGTCTACTTAGTGGTTCCGGC 59.176 52.381 0.00 0.00 0.00 6.13
4647 5562 0.450983 GCGACGGCAGTCTACTTAGT 59.549 55.000 15.11 0.00 44.93 2.24
4759 5686 1.807886 GCTCGAGCTAGGTCCGAAA 59.192 57.895 29.88 0.00 38.21 3.46
4813 5740 0.179124 TTTGACAAACACCTTGCGGC 60.179 50.000 0.00 0.00 38.75 6.53
4816 5743 2.287644 GGCAATTTGACAAACACCTTGC 59.712 45.455 20.95 20.95 41.44 4.01
4855 5796 9.025041 ACCTTTCTTCGATGAAAAATAGGAAAT 57.975 29.630 25.07 9.43 35.79 2.17
4914 5855 5.183530 TCATCTCCCACAACATCTTGATT 57.816 39.130 0.00 0.00 0.00 2.57
4976 5923 3.251004 AGAAGTCGCCAACTCAAATTCAC 59.749 43.478 0.00 0.00 37.17 3.18
5036 5985 4.724279 ACCTTCTACCAAACTGAACCAT 57.276 40.909 0.00 0.00 0.00 3.55
5051 6002 5.480772 TCCTATCTCGAAGAAACAACCTTCT 59.519 40.000 0.00 0.00 38.23 2.85
5157 6112 4.039004 TGGTGTTGAAGAAATCCCAATGTG 59.961 41.667 0.00 0.00 0.00 3.21
5161 6116 4.653341 ACAATGGTGTTGAAGAAATCCCAA 59.347 37.500 0.00 0.00 32.58 4.12
5168 6123 5.127845 TGGCTTTTACAATGGTGTTGAAGAA 59.872 36.000 0.00 0.00 39.30 2.52
5191 6146 7.818446 TGAAACCAATTATCATGTTTGTCCATG 59.182 33.333 0.00 0.00 42.89 3.66
5218 6174 1.094073 CCGCTGCATTCCTTCTCAGG 61.094 60.000 0.00 0.00 42.50 3.86
5299 6260 0.548031 ATTGATGGCACCGGTCAGAT 59.452 50.000 2.59 0.00 28.09 2.90
5370 6334 4.926140 ATAGATCTCGATCACAACTGCA 57.074 40.909 0.00 0.00 40.22 4.41
5426 6390 1.365633 GCCATGAGCCTCTCGGTAG 59.634 63.158 0.00 0.00 32.35 3.18
5478 6442 6.603201 TCATAAAGTCAATGGATCCAACTTCC 59.397 38.462 24.12 10.97 30.23 3.46
5479 6443 7.630242 TCATAAAGTCAATGGATCCAACTTC 57.370 36.000 24.12 14.00 30.23 3.01
5480 6444 8.599624 ATTCATAAAGTCAATGGATCCAACTT 57.400 30.769 20.67 20.35 0.00 2.66
5481 6445 8.472413 CAATTCATAAAGTCAATGGATCCAACT 58.528 33.333 20.67 15.25 0.00 3.16
5482 6446 7.707893 CCAATTCATAAAGTCAATGGATCCAAC 59.292 37.037 20.67 12.95 0.00 3.77
5498 6462 9.434420 GACAAATTTTCCATGTCCAATTCATAA 57.566 29.630 0.00 0.00 37.97 1.90
5519 6483 1.001068 CTTGCCATGCCACATGACAAA 59.999 47.619 9.10 0.54 0.00 2.83
5610 6582 3.476552 CATCCCAAAGTATGCGTACCAT 58.523 45.455 12.54 0.00 37.97 3.55
5636 6608 4.815308 GGACATTGAGATCATTGTGAGAGG 59.185 45.833 13.46 0.00 39.62 3.69
5816 6806 4.799419 GCATGTTGCAGATTTTTGTGTT 57.201 36.364 0.00 0.00 44.26 3.32
5866 6865 2.356665 TTGAAGCACACCCAAAGCTA 57.643 45.000 0.00 0.00 37.70 3.32
5867 6866 1.136891 GTTTGAAGCACACCCAAAGCT 59.863 47.619 0.00 0.00 41.03 3.74
5873 6872 1.299089 GCGTGTTTGAAGCACACCC 60.299 57.895 12.50 0.00 41.39 4.61
5962 6966 7.390162 TGATGATAGTGTTGTGCAAGATAACAA 59.610 33.333 8.17 0.00 37.41 2.83
6013 7027 8.398665 GGACACCATTGTAGAGATATTGAAAAC 58.601 37.037 0.00 0.00 35.47 2.43
6080 7097 5.290493 TCAATCCTTCGGTATGCTTGTAT 57.710 39.130 0.00 0.00 0.00 2.29
6082 7099 3.627395 TCAATCCTTCGGTATGCTTGT 57.373 42.857 0.00 0.00 0.00 3.16
6100 7117 4.202274 TGGTTGTGAACTTCTCGGTTATCA 60.202 41.667 0.00 0.00 0.00 2.15
6114 8855 7.169158 AGATCTTTTTGAAGTTGGTTGTGAA 57.831 32.000 0.00 0.00 0.00 3.18
6155 8896 6.149308 CACAAATAGCAAGTGGTATGAAGTCA 59.851 38.462 3.89 0.00 38.57 3.41
6165 8906 4.241590 TGAAAGCACAAATAGCAAGTGG 57.758 40.909 0.00 0.00 33.98 4.00
6174 8915 8.723311 CCAAATAAACATGATGAAAGCACAAAT 58.277 29.630 0.00 0.00 30.93 2.32
6220 8961 9.926158 AGCATTCAAATTCAAACACAATATACA 57.074 25.926 0.00 0.00 0.00 2.29
6387 9132 5.929058 AGTTGTCTTCATCTAGCAGATCA 57.071 39.130 0.00 0.00 31.32 2.92
6408 9153 6.016777 ACTGCTGAAAGAGTATCACCAAAAAG 60.017 38.462 0.00 0.00 37.82 2.27
6416 11907 5.187772 ACACCATACTGCTGAAAGAGTATCA 59.812 40.000 0.00 0.00 36.11 2.15
6444 11936 3.376234 CCACAGATGCCTTGTAGTTGATG 59.624 47.826 0.00 0.00 0.00 3.07
6454 11946 0.613260 TAAGTCGCCACAGATGCCTT 59.387 50.000 0.00 0.00 0.00 4.35
6497 11995 1.535833 TGAACACCTCCGAGAGACTC 58.464 55.000 0.00 0.00 0.00 3.36
6506 12004 1.064685 CCTACCCCAATGAACACCTCC 60.065 57.143 0.00 0.00 0.00 4.30
6510 12008 1.074889 ACACCCTACCCCAATGAACAC 59.925 52.381 0.00 0.00 0.00 3.32
6518 12016 3.632080 CACGCACACCCTACCCCA 61.632 66.667 0.00 0.00 0.00 4.96
6561 12059 1.012086 GCAGATGATCACACGCACAT 58.988 50.000 0.00 0.00 0.00 3.21
6563 12061 1.012086 ATGCAGATGATCACACGCAC 58.988 50.000 14.84 0.00 33.87 5.34
6566 12064 3.752412 ACAAATGCAGATGATCACACG 57.248 42.857 0.00 0.00 0.00 4.49
6639 12138 1.129917 TGGTGTAACGTTCCCTTCCA 58.870 50.000 2.82 5.32 38.12 3.53
6651 12150 6.314400 GCATTTCGGACTACTAATTGGTGTAA 59.686 38.462 4.47 0.00 0.00 2.41
6669 12168 6.949578 AATGTAATCTTTTGGTGCATTTCG 57.050 33.333 0.00 0.00 0.00 3.46
6731 12230 9.573166 TCCTAGTGGAAATTTTATGTATCATGG 57.427 33.333 0.00 0.00 39.87 3.66
6773 12272 6.040955 TGGTAAATGCCACAAATTTACAGTGA 59.959 34.615 16.57 0.00 45.81 3.41
7025 12524 4.519350 GGCAAGTTTTAGTTTGGACTAGCT 59.481 41.667 0.00 0.00 39.43 3.32
7029 12528 4.338400 GTCTGGCAAGTTTTAGTTTGGACT 59.662 41.667 0.00 0.00 39.97 3.85
7054 12553 9.844257 ATAGCAGAGCTGAATATTCTTAAAGTT 57.156 29.630 16.24 3.59 40.10 2.66
7076 12575 5.571778 GCAATGCTGCTTAATTTCATAGC 57.428 39.130 0.00 0.00 45.74 2.97
7100 12599 0.602638 TGCGCCTCTGTAACAAGTGG 60.603 55.000 4.18 0.00 34.55 4.00
7238 12737 2.507058 AGCCTCTGAAATGATGCCTGTA 59.493 45.455 0.00 0.00 0.00 2.74
7239 12738 1.284198 AGCCTCTGAAATGATGCCTGT 59.716 47.619 0.00 0.00 0.00 4.00
7245 12753 6.798427 TTCTGTAGTAGCCTCTGAAATGAT 57.202 37.500 0.00 0.00 0.00 2.45
7348 12856 2.501723 GCTTACTGGACTGGAGATCCAA 59.498 50.000 2.65 0.00 45.67 3.53
7376 12884 8.891671 ACAAACTGAATAATTTGCATGTTTCT 57.108 26.923 0.00 0.00 39.03 2.52
7536 13045 6.632834 AGAATTTGTTGAGAACGATTTGAACG 59.367 34.615 0.00 0.00 0.00 3.95
7546 13055 8.302438 AGGAATCAATGAGAATTTGTTGAGAAC 58.698 33.333 0.00 0.00 34.45 3.01
7549 13058 9.485206 AAAAGGAATCAATGAGAATTTGTTGAG 57.515 29.630 0.00 0.00 34.45 3.02
7567 13076 3.243359 TCCTCTGGCACAAAAAGGAAT 57.757 42.857 0.00 0.00 38.70 3.01
7579 13089 0.178970 ATGCCCATTCATCCTCTGGC 60.179 55.000 0.00 0.00 39.33 4.85
7693 13203 3.526931 TCTGAAGATTTGCGGGTAGAG 57.473 47.619 0.00 0.00 0.00 2.43
7718 13228 9.539825 ACATCAGTCATAAGATCTATCAAACAC 57.460 33.333 0.00 0.00 0.00 3.32
7811 13321 6.135819 TGATGGCATATCTTCAATCCTCAT 57.864 37.500 0.00 0.00 0.00 2.90
7863 13373 1.790755 CTCGGTCATCGTTTCCAACA 58.209 50.000 0.00 0.00 40.32 3.33
7879 13389 1.634753 CACACGCATCATGAGCTCG 59.365 57.895 9.64 7.00 0.00 5.03
7964 13474 5.232838 GCATTATGCATTGCCTCTGTTAAAC 59.767 40.000 12.80 0.00 44.26 2.01
7968 13478 2.223641 CGCATTATGCATTGCCTCTGTT 60.224 45.455 17.75 0.00 45.36 3.16
7969 13479 1.335810 CGCATTATGCATTGCCTCTGT 59.664 47.619 17.75 0.00 45.36 3.41
7970 13480 1.335810 ACGCATTATGCATTGCCTCTG 59.664 47.619 17.75 6.20 45.36 3.35
7971 13481 1.683943 ACGCATTATGCATTGCCTCT 58.316 45.000 17.75 0.00 45.36 3.69
7972 13482 3.558505 CTTACGCATTATGCATTGCCTC 58.441 45.455 17.75 0.00 45.36 4.70
7987 13497 1.576356 CTCAGAAGGGATGCTTACGC 58.424 55.000 0.00 0.00 0.00 4.42
8013 13523 5.874895 TTGTTCATCTGAGCTCATTTGAG 57.125 39.130 18.63 5.10 44.75 3.02
8014 13524 7.042254 CGATATTGTTCATCTGAGCTCATTTGA 60.042 37.037 18.63 19.14 0.00 2.69
8015 13525 7.070183 CGATATTGTTCATCTGAGCTCATTTG 58.930 38.462 18.63 17.15 0.00 2.32
8016 13526 6.765036 ACGATATTGTTCATCTGAGCTCATTT 59.235 34.615 18.63 4.67 0.00 2.32
8017 13527 6.202379 CACGATATTGTTCATCTGAGCTCATT 59.798 38.462 18.63 5.08 0.00 2.57
8018 13528 5.695363 CACGATATTGTTCATCTGAGCTCAT 59.305 40.000 18.63 0.00 0.00 2.90
8019 13529 5.045872 CACGATATTGTTCATCTGAGCTCA 58.954 41.667 17.19 17.19 0.00 4.26
8020 13530 5.284864 TCACGATATTGTTCATCTGAGCTC 58.715 41.667 6.82 6.82 0.00 4.09
8021 13531 5.268118 TCACGATATTGTTCATCTGAGCT 57.732 39.130 0.00 0.00 0.00 4.09
8022 13532 5.614231 GCATCACGATATTGTTCATCTGAGC 60.614 44.000 0.00 0.00 0.00 4.26
8023 13533 5.913637 GCATCACGATATTGTTCATCTGAG 58.086 41.667 0.00 0.00 0.00 3.35
8024 13534 5.912360 GCATCACGATATTGTTCATCTGA 57.088 39.130 0.00 0.00 0.00 3.27
8040 13550 4.991056 ACTTACATATGTCATCCGCATCAC 59.009 41.667 12.68 0.00 0.00 3.06
8122 13634 1.289066 GGCACCCCTTTCTTTTCGC 59.711 57.895 0.00 0.00 0.00 4.70
8142 13656 4.381505 GCTTTATTTTCGGATTCCTTGCCA 60.382 41.667 0.30 0.00 0.00 4.92
8161 13675 4.067972 ACCGATATGTTATCGTGGCTTT 57.932 40.909 13.92 0.00 39.67 3.51
8355 13872 2.748532 TGCATGTGATGTGTGTGTATGG 59.251 45.455 0.00 0.00 0.00 2.74
8396 13913 0.935196 GCAAAGGTATAACGCCGAGG 59.065 55.000 0.00 0.00 0.00 4.63
8430 13947 4.351938 CACCGACTCGAACCGCCA 62.352 66.667 0.00 0.00 0.00 5.69
8504 14021 0.111832 ACTACCGTCACTGAGGACCA 59.888 55.000 0.08 0.00 34.24 4.02
8536 14053 0.882474 ACTTCCTCTTCGACTCGTGG 59.118 55.000 0.00 0.00 0.00 4.94
8649 14166 0.966875 ATGTACCACTACCGTCGCCA 60.967 55.000 0.00 0.00 0.00 5.69
8673 14190 2.804697 TGACTCGAACATCCACGAAA 57.195 45.000 0.00 0.00 38.05 3.46
8686 14203 0.041488 GTACCGCTACCGATGACTCG 60.041 60.000 0.00 0.00 44.62 4.18
8745 14283 1.377612 GGAAACGCCAAGTACCCCT 59.622 57.895 0.00 0.00 36.34 4.79
8762 14300 1.289109 CGGCAAGACCAACTACACGG 61.289 60.000 0.00 0.00 39.03 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.