Multiple sequence alignment - TraesCS7A01G312600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G312600 chr7A 100.000 4295 0 0 1 4295 443399577 443395283 0.000000e+00 7932.0
1 TraesCS7A01G312600 chr7A 83.895 534 78 5 1 530 161527709 161527180 1.780000e-138 503.0
2 TraesCS7A01G312600 chr7A 83.925 535 77 4 1 530 259752714 259753244 1.780000e-138 503.0
3 TraesCS7A01G312600 chr7A 100.000 29 0 0 564 592 574114311 574114283 2.000000e-03 54.7
4 TraesCS7A01G312600 chr7A 100.000 28 0 0 564 591 168458617 168458590 8.000000e-03 52.8
5 TraesCS7A01G312600 chr7A 96.774 31 1 0 534 564 592905629 592905599 8.000000e-03 52.8
6 TraesCS7A01G312600 chr7B 95.047 1898 50 13 1943 3811 388175680 388173798 0.000000e+00 2944.0
7 TraesCS7A01G312600 chr7B 94.814 1022 27 5 625 1628 388176911 388175898 0.000000e+00 1570.0
8 TraesCS7A01G312600 chr7B 93.450 229 14 1 3994 4222 388173399 388173172 5.320000e-89 339.0
9 TraesCS7A01G312600 chr7B 92.121 165 5 2 1627 1783 388175841 388175677 4.320000e-55 226.0
10 TraesCS7A01G312600 chr7B 88.281 128 11 3 3866 3991 388173806 388173681 2.680000e-32 150.0
11 TraesCS7A01G312600 chr7B 82.090 134 15 8 959 1086 703028707 703028837 5.870000e-19 106.0
12 TraesCS7A01G312600 chr7B 96.875 32 1 0 959 990 703028615 703028646 2.000000e-03 54.7
13 TraesCS7A01G312600 chr7D 94.915 1239 30 7 1943 3165 391586753 391585532 0.000000e+00 1908.0
14 TraesCS7A01G312600 chr7D 94.852 1185 33 7 622 1783 391587929 391586750 0.000000e+00 1825.0
15 TraesCS7A01G312600 chr7D 95.076 792 26 8 3167 3951 391585435 391584650 0.000000e+00 1234.0
16 TraesCS7A01G312600 chr7D 83.925 535 77 4 1 530 477790685 477791215 1.780000e-138 503.0
17 TraesCS7A01G312600 chr7D 94.872 234 12 0 3996 4229 391584129 391583896 2.440000e-97 366.0
18 TraesCS7A01G312600 chr7D 97.024 168 5 0 1782 1949 312574292 312574125 2.530000e-72 283.0
19 TraesCS7A01G312600 chr7D 93.617 188 10 2 1770 1955 363149010 363148823 3.270000e-71 279.0
20 TraesCS7A01G312600 chrUn 84.299 535 75 4 1 530 99782444 99781914 8.240000e-142 514.0
21 TraesCS7A01G312600 chrUn 75.191 524 78 30 962 1483 292710791 292710318 2.620000e-47 200.0
22 TraesCS7A01G312600 chrUn 75.191 524 78 30 962 1483 292716260 292715787 2.620000e-47 200.0
23 TraesCS7A01G312600 chrUn 75.142 527 79 30 956 1480 301276389 301276865 2.620000e-47 200.0
24 TraesCS7A01G312600 chr5A 84.299 535 75 4 1 530 444336163 444335633 8.240000e-142 514.0
25 TraesCS7A01G312600 chr5A 100.000 31 0 0 534 564 708314627 708314657 1.670000e-04 58.4
26 TraesCS7A01G312600 chr4A 84.112 535 76 4 1 530 481561119 481560589 3.830000e-140 508.0
27 TraesCS7A01G312600 chr4A 95.385 65 3 0 4231 4295 300464021 300464085 2.110000e-18 104.0
28 TraesCS7A01G312600 chr3A 84.112 535 76 4 1 530 146874983 146874453 3.830000e-140 508.0
29 TraesCS7A01G312600 chr2D 84.112 535 76 4 1 530 66575812 66576342 3.830000e-140 508.0
30 TraesCS7A01G312600 chr2A 83.955 536 75 6 1 530 558808502 558809032 1.780000e-138 503.0
31 TraesCS7A01G312600 chr2A 96.532 173 5 1 1775 1947 469790206 469790035 7.030000e-73 285.0
32 TraesCS7A01G312600 chr2A 95.506 178 8 0 1779 1956 570190476 570190653 7.030000e-73 285.0
33 TraesCS7A01G312600 chr2A 100.000 28 0 0 564 591 55459560 55459533 8.000000e-03 52.8
34 TraesCS7A01G312600 chr2A 100.000 28 0 0 564 591 559592012 559591985 8.000000e-03 52.8
35 TraesCS7A01G312600 chr3D 97.093 172 4 1 1776 1946 550509603 550509432 5.430000e-74 289.0
36 TraesCS7A01G312600 chr1D 96.491 171 6 0 1779 1949 286391234 286391064 2.530000e-72 283.0
37 TraesCS7A01G312600 chr6A 95.954 173 7 0 1776 1948 5441088 5441260 9.090000e-72 281.0
38 TraesCS7A01G312600 chr1B 95.833 168 7 0 1782 1949 65568944 65568777 5.470000e-69 272.0
39 TraesCS7A01G312600 chr1B 89.041 73 7 1 3994 4066 457468569 457468498 5.920000e-14 89.8
40 TraesCS7A01G312600 chr6D 92.553 188 11 3 1782 1968 289352864 289352679 2.550000e-67 267.0
41 TraesCS7A01G312600 chr6D 100.000 28 0 0 564 591 1548817 1548844 8.000000e-03 52.8
42 TraesCS7A01G312600 chr4B 76.712 365 64 14 1122 1485 554192578 554192234 2.640000e-42 183.0
43 TraesCS7A01G312600 chr5D 100.000 31 0 0 562 592 213079837 213079867 1.670000e-04 58.4
44 TraesCS7A01G312600 chr5B 100.000 28 0 0 564 591 65872468 65872495 8.000000e-03 52.8
45 TraesCS7A01G312600 chr4D 100.000 28 0 0 534 561 66777634 66777607 8.000000e-03 52.8
46 TraesCS7A01G312600 chr1A 100.000 28 0 0 565 592 75096479 75096452 8.000000e-03 52.8
47 TraesCS7A01G312600 chr1A 92.105 38 2 1 552 589 256211937 256211973 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G312600 chr7A 443395283 443399577 4294 True 7932.00 7932 100.00000 1 4295 1 chr7A.!!$R3 4294
1 TraesCS7A01G312600 chr7A 161527180 161527709 529 True 503.00 503 83.89500 1 530 1 chr7A.!!$R1 529
2 TraesCS7A01G312600 chr7A 259752714 259753244 530 False 503.00 503 83.92500 1 530 1 chr7A.!!$F1 529
3 TraesCS7A01G312600 chr7B 388173172 388176911 3739 True 1045.80 2944 92.74260 625 4222 5 chr7B.!!$R1 3597
4 TraesCS7A01G312600 chr7D 391583896 391587929 4033 True 1333.25 1908 94.92875 622 4229 4 chr7D.!!$R3 3607
5 TraesCS7A01G312600 chr7D 477790685 477791215 530 False 503.00 503 83.92500 1 530 1 chr7D.!!$F1 529
6 TraesCS7A01G312600 chrUn 99781914 99782444 530 True 514.00 514 84.29900 1 530 1 chrUn.!!$R1 529
7 TraesCS7A01G312600 chr5A 444335633 444336163 530 True 514.00 514 84.29900 1 530 1 chr5A.!!$R1 529
8 TraesCS7A01G312600 chr4A 481560589 481561119 530 True 508.00 508 84.11200 1 530 1 chr4A.!!$R1 529
9 TraesCS7A01G312600 chr3A 146874453 146874983 530 True 508.00 508 84.11200 1 530 1 chr3A.!!$R1 529
10 TraesCS7A01G312600 chr2D 66575812 66576342 530 False 508.00 508 84.11200 1 530 1 chr2D.!!$F1 529
11 TraesCS7A01G312600 chr2A 558808502 558809032 530 False 503.00 503 83.95500 1 530 1 chr2A.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 516 0.030504 CGTTGCATTGCTCCAACACA 59.969 50.000 10.49 0.0 40.93 3.72 F
684 691 0.250901 TGAGGTGCTTTCTTCTGCCC 60.251 55.000 0.00 0.0 0.00 5.36 F
1791 1886 1.002087 AGCAAACAAGTACTCCCTCCG 59.998 52.381 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1335 1364 1.551019 AACCCTTCCTGTAGGCCGAC 61.551 60.000 9.38 9.38 33.73 4.79 R
1823 1918 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16 R
3675 3890 2.225068 ACCAAGAGAACTGTCACACG 57.775 50.000 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 7.128234 TGAGATGGATGACTCATTACATTCA 57.872 36.000 10.01 0.00 38.08 2.57
64 65 9.770097 GGATGACTCATTACATTCAGATCTTTA 57.230 33.333 0.00 0.00 0.00 1.85
96 97 5.435686 TTCCTAGAATGCCACAGTACATT 57.564 39.130 0.00 1.45 39.16 2.71
108 109 5.687285 GCCACAGTACATTCTCTTTTGTTTG 59.313 40.000 0.00 0.00 0.00 2.93
114 115 7.864379 CAGTACATTCTCTTTTGTTTGAGCATT 59.136 33.333 0.00 0.00 0.00 3.56
132 133 4.708421 AGCATTATGAAACAACCTCTGCAT 59.292 37.500 0.00 0.00 0.00 3.96
133 134 5.039333 GCATTATGAAACAACCTCTGCATC 58.961 41.667 0.00 0.00 0.00 3.91
134 135 5.163581 GCATTATGAAACAACCTCTGCATCT 60.164 40.000 0.00 0.00 0.00 2.90
136 137 4.778534 ATGAAACAACCTCTGCATCTTG 57.221 40.909 0.00 0.00 0.00 3.02
137 138 3.819368 TGAAACAACCTCTGCATCTTGA 58.181 40.909 0.00 0.00 0.00 3.02
176 178 5.590663 GTCTCAAAACCTTATGAGGAATCCC 59.409 44.000 11.14 0.00 46.74 3.85
177 179 5.492524 TCTCAAAACCTTATGAGGAATCCCT 59.507 40.000 11.14 0.00 46.74 4.20
183 185 4.790790 ACCTTATGAGGAATCCCTTTCACT 59.209 41.667 11.14 0.00 46.74 3.41
240 242 1.135402 GGGCATTCACTTAAGTTGGCG 60.135 52.381 19.99 5.53 34.02 5.69
253 255 2.084546 AGTTGGCGTAATCCTTTCAGC 58.915 47.619 0.00 0.00 0.00 4.26
255 257 2.418368 TGGCGTAATCCTTTCAGCAT 57.582 45.000 0.00 0.00 0.00 3.79
273 275 9.844790 TTTCAGCATAGAACACAATTATTCTTG 57.155 29.630 4.62 4.99 36.56 3.02
287 289 7.546667 ACAATTATTCTTGCAAACATGGATCAC 59.453 33.333 0.00 0.00 0.00 3.06
295 297 6.718522 TGCAAACATGGATCACATCATATT 57.281 33.333 0.00 0.00 37.84 1.28
296 298 7.114866 TGCAAACATGGATCACATCATATTT 57.885 32.000 0.00 0.00 37.84 1.40
315 317 4.920640 TTTAATTCCAACCGCACAAAGA 57.079 36.364 0.00 0.00 0.00 2.52
358 360 3.817709 TGTGTGACATCTCAGACACAA 57.182 42.857 0.00 0.00 43.83 3.33
360 362 2.802816 GTGTGACATCTCAGACACAACC 59.197 50.000 0.00 0.00 43.53 3.77
362 364 3.118445 TGTGACATCTCAGACACAACCAA 60.118 43.478 0.00 0.00 40.24 3.67
364 366 3.134623 TGACATCTCAGACACAACCAAGT 59.865 43.478 0.00 0.00 0.00 3.16
367 369 5.057149 ACATCTCAGACACAACCAAGTAAC 58.943 41.667 0.00 0.00 0.00 2.50
369 371 4.693283 TCTCAGACACAACCAAGTAACAG 58.307 43.478 0.00 0.00 0.00 3.16
375 377 3.191669 CACAACCAAGTAACAGTCACGA 58.808 45.455 0.00 0.00 0.00 4.35
379 381 5.181622 ACAACCAAGTAACAGTCACGAAAAA 59.818 36.000 0.00 0.00 0.00 1.94
383 385 5.163794 CCAAGTAACAGTCACGAAAAACAGT 60.164 40.000 0.00 0.00 0.00 3.55
386 388 5.815740 AGTAACAGTCACGAAAAACAGTCAT 59.184 36.000 0.00 0.00 0.00 3.06
396 398 4.346129 GAAAAACAGTCATCATCGCATCC 58.654 43.478 0.00 0.00 0.00 3.51
408 410 6.262720 TCATCATCGCATCCAATGATTTGTTA 59.737 34.615 0.00 0.00 39.91 2.41
419 421 6.375174 TCCAATGATTTGTTAGTCATCCACTG 59.625 38.462 0.00 0.00 36.43 3.66
434 436 2.828520 TCCACTGAGATGTCTTCACCTC 59.171 50.000 0.00 0.00 0.00 3.85
437 439 4.503817 CCACTGAGATGTCTTCACCTCAAA 60.504 45.833 0.00 0.00 35.52 2.69
483 485 7.668525 AAAATACTGACAACTTACTACCTGC 57.331 36.000 0.00 0.00 0.00 4.85
485 487 1.993370 CTGACAACTTACTACCTGCGC 59.007 52.381 0.00 0.00 0.00 6.09
490 492 1.546961 ACTTACTACCTGCGCTGACT 58.453 50.000 16.65 2.83 0.00 3.41
502 507 2.084681 GCTGACTGCGTTGCATTGC 61.085 57.895 0.46 0.46 38.13 3.56
510 515 1.277495 GCGTTGCATTGCTCCAACAC 61.277 55.000 10.49 0.00 40.93 3.32
511 516 0.030504 CGTTGCATTGCTCCAACACA 59.969 50.000 10.49 0.00 40.93 3.72
530 536 3.936453 CACATGGCCCATCATTTTTCTTG 59.064 43.478 0.00 0.00 0.00 3.02
531 537 3.583966 ACATGGCCCATCATTTTTCTTGT 59.416 39.130 0.00 0.00 0.00 3.16
532 538 4.776837 ACATGGCCCATCATTTTTCTTGTA 59.223 37.500 0.00 0.00 0.00 2.41
533 539 5.105228 ACATGGCCCATCATTTTTCTTGTAG 60.105 40.000 0.00 0.00 0.00 2.74
534 540 4.415596 TGGCCCATCATTTTTCTTGTAGT 58.584 39.130 0.00 0.00 0.00 2.73
535 541 5.575157 TGGCCCATCATTTTTCTTGTAGTA 58.425 37.500 0.00 0.00 0.00 1.82
536 542 5.417580 TGGCCCATCATTTTTCTTGTAGTAC 59.582 40.000 0.00 0.00 0.00 2.73
537 543 5.652452 GGCCCATCATTTTTCTTGTAGTACT 59.348 40.000 0.00 0.00 0.00 2.73
538 544 6.183360 GGCCCATCATTTTTCTTGTAGTACTC 60.183 42.308 0.00 0.00 0.00 2.59
539 545 6.599638 GCCCATCATTTTTCTTGTAGTACTCT 59.400 38.462 0.00 0.00 0.00 3.24
540 546 7.201652 GCCCATCATTTTTCTTGTAGTACTCTC 60.202 40.741 0.00 0.00 0.00 3.20
541 547 8.043710 CCCATCATTTTTCTTGTAGTACTCTCT 58.956 37.037 0.00 0.00 0.00 3.10
542 548 9.092876 CCATCATTTTTCTTGTAGTACTCTCTC 57.907 37.037 0.00 0.00 0.00 3.20
543 549 9.868277 CATCATTTTTCTTGTAGTACTCTCTCT 57.132 33.333 0.00 0.00 0.00 3.10
544 550 9.868277 ATCATTTTTCTTGTAGTACTCTCTCTG 57.132 33.333 0.00 0.00 0.00 3.35
545 551 8.861086 TCATTTTTCTTGTAGTACTCTCTCTGT 58.139 33.333 0.00 0.00 0.00 3.41
546 552 9.482627 CATTTTTCTTGTAGTACTCTCTCTGTT 57.517 33.333 0.00 0.00 0.00 3.16
547 553 9.699703 ATTTTTCTTGTAGTACTCTCTCTGTTC 57.300 33.333 0.00 0.00 0.00 3.18
548 554 6.821031 TTCTTGTAGTACTCTCTCTGTTCC 57.179 41.667 0.00 0.00 0.00 3.62
549 555 5.877491 TCTTGTAGTACTCTCTCTGTTCCA 58.123 41.667 0.00 0.00 0.00 3.53
550 556 6.304624 TCTTGTAGTACTCTCTCTGTTCCAA 58.695 40.000 0.00 0.00 0.00 3.53
551 557 6.776116 TCTTGTAGTACTCTCTCTGTTCCAAA 59.224 38.462 0.00 0.00 0.00 3.28
552 558 7.451877 TCTTGTAGTACTCTCTCTGTTCCAAAT 59.548 37.037 0.00 0.00 0.00 2.32
553 559 7.540474 TGTAGTACTCTCTCTGTTCCAAATT 57.460 36.000 0.00 0.00 0.00 1.82
554 560 8.645814 TGTAGTACTCTCTCTGTTCCAAATTA 57.354 34.615 0.00 0.00 0.00 1.40
555 561 8.521176 TGTAGTACTCTCTCTGTTCCAAATTAC 58.479 37.037 0.00 0.00 0.00 1.89
556 562 7.784470 AGTACTCTCTCTGTTCCAAATTACT 57.216 36.000 0.00 0.00 0.00 2.24
557 563 7.832769 AGTACTCTCTCTGTTCCAAATTACTC 58.167 38.462 0.00 0.00 0.00 2.59
558 564 5.715070 ACTCTCTCTGTTCCAAATTACTCG 58.285 41.667 0.00 0.00 0.00 4.18
559 565 5.244178 ACTCTCTCTGTTCCAAATTACTCGT 59.756 40.000 0.00 0.00 0.00 4.18
560 566 5.710984 TCTCTCTGTTCCAAATTACTCGTC 58.289 41.667 0.00 0.00 0.00 4.20
561 567 5.243060 TCTCTCTGTTCCAAATTACTCGTCA 59.757 40.000 0.00 0.00 0.00 4.35
562 568 6.037786 TCTCTGTTCCAAATTACTCGTCAT 57.962 37.500 0.00 0.00 0.00 3.06
563 569 5.869344 TCTCTGTTCCAAATTACTCGTCATG 59.131 40.000 0.00 0.00 0.00 3.07
564 570 5.789521 TCTGTTCCAAATTACTCGTCATGA 58.210 37.500 0.00 0.00 0.00 3.07
578 584 6.052840 CTCGTCATGAGTAATTTGGAATGG 57.947 41.667 0.00 0.00 40.03 3.16
579 585 5.739959 TCGTCATGAGTAATTTGGAATGGA 58.260 37.500 0.00 0.00 0.00 3.41
580 586 5.817296 TCGTCATGAGTAATTTGGAATGGAG 59.183 40.000 0.00 0.00 0.00 3.86
581 587 5.008019 CGTCATGAGTAATTTGGAATGGAGG 59.992 44.000 0.00 0.00 0.00 4.30
582 588 5.300286 GTCATGAGTAATTTGGAATGGAGGG 59.700 44.000 0.00 0.00 0.00 4.30
583 589 5.193527 TCATGAGTAATTTGGAATGGAGGGA 59.806 40.000 0.00 0.00 0.00 4.20
584 590 5.116084 TGAGTAATTTGGAATGGAGGGAG 57.884 43.478 0.00 0.00 0.00 4.30
585 591 4.540099 TGAGTAATTTGGAATGGAGGGAGT 59.460 41.667 0.00 0.00 0.00 3.85
586 592 5.729229 TGAGTAATTTGGAATGGAGGGAGTA 59.271 40.000 0.00 0.00 0.00 2.59
587 593 6.389869 TGAGTAATTTGGAATGGAGGGAGTAT 59.610 38.462 0.00 0.00 0.00 2.12
588 594 7.570982 TGAGTAATTTGGAATGGAGGGAGTATA 59.429 37.037 0.00 0.00 0.00 1.47
589 595 8.525729 AGTAATTTGGAATGGAGGGAGTATAT 57.474 34.615 0.00 0.00 0.00 0.86
590 596 8.386264 AGTAATTTGGAATGGAGGGAGTATATG 58.614 37.037 0.00 0.00 0.00 1.78
591 597 6.786843 ATTTGGAATGGAGGGAGTATATGT 57.213 37.500 0.00 0.00 0.00 2.29
592 598 5.567037 TTGGAATGGAGGGAGTATATGTG 57.433 43.478 0.00 0.00 0.00 3.21
593 599 4.566837 TGGAATGGAGGGAGTATATGTGT 58.433 43.478 0.00 0.00 0.00 3.72
594 600 5.722290 TGGAATGGAGGGAGTATATGTGTA 58.278 41.667 0.00 0.00 0.00 2.90
595 601 6.147473 TGGAATGGAGGGAGTATATGTGTAA 58.853 40.000 0.00 0.00 0.00 2.41
596 602 6.270000 TGGAATGGAGGGAGTATATGTGTAAG 59.730 42.308 0.00 0.00 0.00 2.34
597 603 5.746990 ATGGAGGGAGTATATGTGTAAGC 57.253 43.478 0.00 0.00 0.00 3.09
598 604 4.816126 TGGAGGGAGTATATGTGTAAGCT 58.184 43.478 0.00 0.00 0.00 3.74
599 605 4.833380 TGGAGGGAGTATATGTGTAAGCTC 59.167 45.833 0.00 0.00 0.00 4.09
600 606 5.081032 GGAGGGAGTATATGTGTAAGCTCT 58.919 45.833 0.00 0.00 0.00 4.09
601 607 5.184287 GGAGGGAGTATATGTGTAAGCTCTC 59.816 48.000 0.00 0.00 0.00 3.20
602 608 4.762765 AGGGAGTATATGTGTAAGCTCTCG 59.237 45.833 0.00 0.00 0.00 4.04
603 609 4.760715 GGGAGTATATGTGTAAGCTCTCGA 59.239 45.833 0.00 0.00 0.00 4.04
604 610 5.241064 GGGAGTATATGTGTAAGCTCTCGAA 59.759 44.000 0.00 0.00 0.00 3.71
605 611 6.238953 GGGAGTATATGTGTAAGCTCTCGAAA 60.239 42.308 0.00 0.00 0.00 3.46
606 612 7.371936 GGAGTATATGTGTAAGCTCTCGAAAT 58.628 38.462 0.00 0.00 0.00 2.17
607 613 7.327275 GGAGTATATGTGTAAGCTCTCGAAATG 59.673 40.741 0.00 0.00 0.00 2.32
608 614 7.717568 AGTATATGTGTAAGCTCTCGAAATGT 58.282 34.615 0.00 0.00 0.00 2.71
609 615 6.834959 ATATGTGTAAGCTCTCGAAATGTG 57.165 37.500 0.00 0.00 0.00 3.21
610 616 2.736721 TGTGTAAGCTCTCGAAATGTGC 59.263 45.455 0.00 0.00 0.00 4.57
611 617 1.992667 TGTAAGCTCTCGAAATGTGCG 59.007 47.619 0.00 0.00 0.00 5.34
612 618 2.259618 GTAAGCTCTCGAAATGTGCGA 58.740 47.619 0.00 0.00 36.23 5.10
653 659 1.414550 GCGATTTCTAGCCCCTTCTCT 59.585 52.381 0.00 0.00 0.00 3.10
658 664 0.558712 TCTAGCCCCTTCTCTCCTCC 59.441 60.000 0.00 0.00 0.00 4.30
684 691 0.250901 TGAGGTGCTTTCTTCTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
689 696 2.744768 GCTTTCTTCTGCCCTCGCG 61.745 63.158 0.00 0.00 38.08 5.87
762 769 1.761784 AGCACCATTGGACTTTGCAAA 59.238 42.857 12.14 12.14 35.57 3.68
1160 1186 2.113433 GGTACGCCTCTCTCTCGCA 61.113 63.158 0.00 0.00 0.00 5.10
1164 1190 3.821055 GCCTCTCTCTCGCACGCT 61.821 66.667 0.00 0.00 0.00 5.07
1236 1265 4.796231 GGATCCGTGAGCGCGTGT 62.796 66.667 8.43 0.00 36.67 4.49
1470 1499 2.104792 TGGATCTTTCGATGATGGGTCC 59.895 50.000 6.22 3.64 0.00 4.46
1620 1649 2.866762 GACGGCATATCTTGGTTCAGTC 59.133 50.000 0.00 0.00 0.00 3.51
1752 1847 4.147321 GGCCATGGTGATGATATTGTCTT 58.853 43.478 14.67 0.00 0.00 3.01
1788 1883 3.744660 CTTGAGCAAACAAGTACTCCCT 58.255 45.455 0.00 0.00 41.32 4.20
1789 1884 3.402628 TGAGCAAACAAGTACTCCCTC 57.597 47.619 0.00 0.00 0.00 4.30
1790 1885 2.038557 TGAGCAAACAAGTACTCCCTCC 59.961 50.000 0.00 0.00 0.00 4.30
1791 1886 1.002087 AGCAAACAAGTACTCCCTCCG 59.998 52.381 0.00 0.00 0.00 4.63
1792 1887 1.270678 GCAAACAAGTACTCCCTCCGT 60.271 52.381 0.00 0.00 0.00 4.69
1793 1888 2.809299 GCAAACAAGTACTCCCTCCGTT 60.809 50.000 0.00 0.00 0.00 4.44
1794 1889 3.064931 CAAACAAGTACTCCCTCCGTTC 58.935 50.000 0.00 0.00 0.00 3.95
1795 1890 1.264295 ACAAGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
1796 1891 1.203149 ACAAGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
1797 1892 2.042162 ACAAGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
1798 1893 3.094572 CAAGTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
1799 1894 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1800 1895 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1801 1896 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1802 1897 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1803 1898 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1804 1899 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1805 1900 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1806 1901 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1807 1902 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1808 1903 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1809 1904 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1810 1905 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1811 1906 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
1812 1907 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
1830 1925 9.396022 AGTCTTTTTAGAGATTTCAACAAGTGA 57.604 29.630 0.00 0.00 0.00 3.41
1831 1926 9.439537 GTCTTTTTAGAGATTTCAACAAGTGAC 57.560 33.333 0.00 0.00 35.39 3.67
1832 1927 9.396022 TCTTTTTAGAGATTTCAACAAGTGACT 57.604 29.630 0.00 0.00 35.39 3.41
1835 1930 9.607988 TTTTAGAGATTTCAACAAGTGACTACA 57.392 29.630 0.00 0.00 35.39 2.74
1836 1931 9.778741 TTTAGAGATTTCAACAAGTGACTACAT 57.221 29.630 0.00 0.00 35.39 2.29
1838 1933 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
1839 1934 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
1840 1935 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
1841 1936 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
1842 1937 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
1843 1938 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
1844 1939 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
1845 1940 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
1846 1941 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
1847 1942 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
1848 1943 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
1849 1944 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
1850 1945 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
1851 1946 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
1852 1947 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1853 1948 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1854 1949 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1855 1950 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1856 1951 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1857 1952 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1858 1953 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1859 1954 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1860 1955 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1861 1956 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1862 1957 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1902 1997 7.946655 CATACATTCGTATGTTGTAGTCCAT 57.053 36.000 13.12 0.00 46.70 3.41
1903 1998 8.365399 CATACATTCGTATGTTGTAGTCCATT 57.635 34.615 13.12 0.00 46.70 3.16
1904 1999 8.826710 CATACATTCGTATGTTGTAGTCCATTT 58.173 33.333 13.12 0.00 46.70 2.32
1905 2000 7.072177 ACATTCGTATGTTGTAGTCCATTTG 57.928 36.000 1.31 0.00 42.29 2.32
1906 2001 6.876789 ACATTCGTATGTTGTAGTCCATTTGA 59.123 34.615 1.31 0.00 42.29 2.69
1907 2002 7.389330 ACATTCGTATGTTGTAGTCCATTTGAA 59.611 33.333 1.31 0.00 42.29 2.69
1908 2003 7.731882 TTCGTATGTTGTAGTCCATTTGAAA 57.268 32.000 0.00 0.00 0.00 2.69
1909 2004 7.915293 TCGTATGTTGTAGTCCATTTGAAAT 57.085 32.000 0.00 0.00 0.00 2.17
1910 2005 7.747888 TCGTATGTTGTAGTCCATTTGAAATG 58.252 34.615 10.84 10.84 0.00 2.32
1911 2006 7.389330 TCGTATGTTGTAGTCCATTTGAAATGT 59.611 33.333 15.93 1.43 0.00 2.71
1912 2007 7.692291 CGTATGTTGTAGTCCATTTGAAATGTC 59.308 37.037 15.93 9.10 0.00 3.06
1913 2008 7.765695 ATGTTGTAGTCCATTTGAAATGTCT 57.234 32.000 15.93 14.81 0.00 3.41
1914 2009 8.862325 ATGTTGTAGTCCATTTGAAATGTCTA 57.138 30.769 15.93 13.97 0.00 2.59
1915 2010 8.684386 TGTTGTAGTCCATTTGAAATGTCTAA 57.316 30.769 15.93 4.89 0.00 2.10
1916 2011 9.126151 TGTTGTAGTCCATTTGAAATGTCTAAA 57.874 29.630 15.93 10.39 0.00 1.85
1917 2012 9.959749 GTTGTAGTCCATTTGAAATGTCTAAAA 57.040 29.630 15.93 14.59 0.00 1.52
1922 2017 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
1923 2018 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
1941 2036 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
1991 2086 4.104102 TGAGAAAATCACCCCTACTTGTGT 59.896 41.667 0.00 0.00 34.14 3.72
2090 2185 5.526111 GCCTAATCTCACGGCTGTATTTTTA 59.474 40.000 0.00 0.00 40.62 1.52
2091 2186 6.204882 GCCTAATCTCACGGCTGTATTTTTAT 59.795 38.462 0.00 0.00 40.62 1.40
2092 2187 7.255139 GCCTAATCTCACGGCTGTATTTTTATT 60.255 37.037 0.00 0.00 40.62 1.40
2093 2188 8.621286 CCTAATCTCACGGCTGTATTTTTATTT 58.379 33.333 0.00 0.00 0.00 1.40
2140 2235 0.968901 TGGTATCCCGACGAGCTTGT 60.969 55.000 6.22 6.22 0.00 3.16
2162 2257 4.980434 GTCATGTTGCTTATGATTCCATGC 59.020 41.667 0.00 0.00 36.96 4.06
2188 2283 2.854963 TCAGAAAATGCAGCACTCTGT 58.145 42.857 21.86 0.00 42.29 3.41
2377 2472 8.871686 AAAATAATTTATGGACGCAAAGGATC 57.128 30.769 0.00 0.00 0.00 3.36
2407 2502 5.961395 ATAAATACTGGTAGCAACGAACG 57.039 39.130 0.00 0.00 0.00 3.95
2747 2842 6.183361 TGGAGTAACATTTCACCACAGAAGTA 60.183 38.462 0.00 0.00 0.00 2.24
2832 2946 5.306678 TGGGAAGCACCATAATTTTCAGTTT 59.693 36.000 2.58 0.00 41.20 2.66
2863 2977 5.869579 TCACTATTTTTCTGCTCTTCTGGT 58.130 37.500 0.00 0.00 0.00 4.00
2996 3110 1.745653 CGAGAGCTCATAGGACACACA 59.254 52.381 17.77 0.00 0.00 3.72
3182 3392 4.549458 GGACACATTCAACATTCTTGGTG 58.451 43.478 0.00 0.00 42.24 4.17
3204 3414 9.679661 TGGTGTCACATATGTATTTATTGACTT 57.320 29.630 8.32 0.00 34.33 3.01
3285 3499 0.630673 TGATGGCTGGGCTTGGTAAT 59.369 50.000 0.00 0.00 0.00 1.89
3407 3621 2.559440 GAGGCCAGCTTGTTCTAGATG 58.441 52.381 5.01 0.00 0.00 2.90
3495 3710 5.475564 TCCCATTCTTTTGTAACTAACTGGC 59.524 40.000 0.00 0.00 0.00 4.85
3711 3928 2.948386 GTTGAAACCAGAGAGGGGC 58.052 57.895 0.00 0.00 43.89 5.80
3712 3929 0.955919 GTTGAAACCAGAGAGGGGCG 60.956 60.000 0.00 0.00 43.89 6.13
3715 3932 0.036306 GAAACCAGAGAGGGGCGAAA 59.964 55.000 0.00 0.00 43.89 3.46
3716 3933 0.476771 AAACCAGAGAGGGGCGAAAA 59.523 50.000 0.00 0.00 43.89 2.29
3718 3935 0.253327 ACCAGAGAGGGGCGAAAATC 59.747 55.000 0.00 0.00 43.89 2.17
3720 3937 1.661341 CAGAGAGGGGCGAAAATCTG 58.339 55.000 0.00 0.00 0.00 2.90
3811 4030 2.095263 TGAAAAATTGAGCGCACTAGGC 60.095 45.455 11.47 0.00 39.90 3.93
3851 4070 2.435938 CCTGCCGCTTCGCCTTTA 60.436 61.111 0.00 0.00 0.00 1.85
3858 4077 0.651031 CGCTTCGCCTTTAGGTAAGC 59.349 55.000 19.58 19.58 45.02 3.09
3897 4116 1.002544 GTCAAAGGAGAGTGGGTGAGG 59.997 57.143 0.00 0.00 0.00 3.86
3899 4118 0.842467 AAAGGAGAGTGGGTGAGGGG 60.842 60.000 0.00 0.00 0.00 4.79
3973 4217 2.842462 TGTGGCTGGACCGTGAGT 60.842 61.111 0.00 0.00 43.94 3.41
3978 4222 2.261671 CTGGACCGTGAGTTCCCG 59.738 66.667 0.00 0.00 0.00 5.14
3984 4228 2.580601 CCGTGAGTTCCCGTTCCCT 61.581 63.158 0.00 0.00 0.00 4.20
3991 4235 1.152204 TTCCCGTTCCCTGACCTCA 60.152 57.895 0.00 0.00 0.00 3.86
3992 4236 1.192146 TTCCCGTTCCCTGACCTCAG 61.192 60.000 0.00 0.00 43.40 3.35
4001 4801 0.460987 CCTGACCTCAGCGCTTAAGG 60.461 60.000 26.72 26.72 42.47 2.69
4029 4829 1.879796 GCACTAAGCAGAGGCACAACT 60.880 52.381 0.00 0.00 44.61 3.16
4030 4830 2.498167 CACTAAGCAGAGGCACAACTT 58.502 47.619 0.00 0.00 44.61 2.66
4102 4902 1.197036 GTTAGTGAGCGCTGGAAAACC 59.803 52.381 18.48 0.00 0.00 3.27
4119 4919 5.296531 GGAAAACCGTTACTCCTACACAAAA 59.703 40.000 5.43 0.00 0.00 2.44
4203 5003 2.422276 ACGAATTTTGTGCAGCTTCC 57.578 45.000 0.00 0.00 0.00 3.46
4209 5009 2.420628 TTTGTGCAGCTTCCGATTTG 57.579 45.000 0.00 0.00 0.00 2.32
4233 5033 3.594775 TGCTGCTTTGCACCGGTG 61.595 61.111 30.66 30.66 38.12 4.94
4234 5034 3.595758 GCTGCTTTGCACCGGTGT 61.596 61.111 33.92 0.00 33.79 4.16
4235 5035 2.332514 CTGCTTTGCACCGGTGTG 59.667 61.111 33.92 21.81 45.65 3.82
4236 5036 2.439338 TGCTTTGCACCGGTGTGT 60.439 55.556 33.92 0.00 44.65 3.72
4237 5037 2.003658 CTGCTTTGCACCGGTGTGTT 62.004 55.000 33.92 0.00 44.65 3.32
4238 5038 1.140804 GCTTTGCACCGGTGTGTTT 59.859 52.632 33.92 0.00 44.65 2.83
4239 5039 1.145162 GCTTTGCACCGGTGTGTTTG 61.145 55.000 33.92 20.84 44.65 2.93
4240 5040 0.527385 CTTTGCACCGGTGTGTTTGG 60.527 55.000 33.92 16.27 44.65 3.28
4241 5041 0.965866 TTTGCACCGGTGTGTTTGGA 60.966 50.000 33.92 7.06 44.65 3.53
4242 5042 0.753479 TTGCACCGGTGTGTTTGGAT 60.753 50.000 33.92 0.00 44.65 3.41
4243 5043 1.169661 TGCACCGGTGTGTTTGGATC 61.170 55.000 33.92 15.44 44.65 3.36
4244 5044 1.866237 CACCGGTGTGTTTGGATCG 59.134 57.895 26.95 0.00 37.72 3.69
4245 5045 1.964373 ACCGGTGTGTTTGGATCGC 60.964 57.895 6.12 0.00 0.00 4.58
4246 5046 1.671054 CCGGTGTGTTTGGATCGCT 60.671 57.895 0.00 0.00 0.00 4.93
4247 5047 0.390603 CCGGTGTGTTTGGATCGCTA 60.391 55.000 0.00 0.00 0.00 4.26
4248 5048 0.719465 CGGTGTGTTTGGATCGCTAC 59.281 55.000 0.00 0.00 0.00 3.58
4249 5049 1.084289 GGTGTGTTTGGATCGCTACC 58.916 55.000 0.00 0.00 0.00 3.18
4250 5050 0.719465 GTGTGTTTGGATCGCTACCG 59.281 55.000 0.00 0.00 0.00 4.02
4251 5051 0.319083 TGTGTTTGGATCGCTACCGT 59.681 50.000 0.00 0.00 35.54 4.83
4252 5052 0.719465 GTGTTTGGATCGCTACCGTG 59.281 55.000 0.00 0.00 35.54 4.94
4253 5053 0.604073 TGTTTGGATCGCTACCGTGA 59.396 50.000 0.00 0.00 35.54 4.35
4254 5054 1.278238 GTTTGGATCGCTACCGTGAG 58.722 55.000 0.00 0.00 35.54 3.51
4255 5055 0.459585 TTTGGATCGCTACCGTGAGC 60.460 55.000 0.00 0.00 39.20 4.26
4256 5056 1.320344 TTGGATCGCTACCGTGAGCT 61.320 55.000 4.50 0.00 40.51 4.09
4257 5057 1.299468 GGATCGCTACCGTGAGCTG 60.299 63.158 0.00 0.00 40.51 4.24
4258 5058 1.946650 GATCGCTACCGTGAGCTGC 60.947 63.158 0.00 0.00 40.51 5.25
4259 5059 3.432051 ATCGCTACCGTGAGCTGCC 62.432 63.158 0.00 0.00 40.51 4.85
4261 5061 4.082523 GCTACCGTGAGCTGCCCA 62.083 66.667 0.00 0.00 39.50 5.36
4262 5062 2.185350 CTACCGTGAGCTGCCCAG 59.815 66.667 0.00 0.00 0.00 4.45
4292 5092 2.176546 CGTTGACCGCTGCATTGG 59.823 61.111 0.00 2.94 0.00 3.16
4293 5093 2.616330 CGTTGACCGCTGCATTGGT 61.616 57.895 9.59 9.59 42.42 3.67
4294 5094 1.295357 CGTTGACCGCTGCATTGGTA 61.295 55.000 9.78 0.00 38.99 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.283291 GGTAGTGACTGAACAAGTTTCAATAAG 58.717 37.037 0.00 0.00 40.07 1.73
13 14 4.588951 TCTCATGGTAGTGACTGAACAAGT 59.411 41.667 0.00 0.00 43.85 3.16
17 18 4.437239 CCATCTCATGGTAGTGACTGAAC 58.563 47.826 0.00 0.00 45.54 3.18
64 65 6.558775 TGTGGCATTCTAGGAATTAGGAGTAT 59.441 38.462 0.00 0.00 0.00 2.12
73 74 5.636903 ATGTACTGTGGCATTCTAGGAAT 57.363 39.130 0.00 0.00 0.00 3.01
96 97 8.412456 TGTTTCATAATGCTCAAACAAAAGAGA 58.588 29.630 0.00 0.00 36.14 3.10
101 102 7.271511 AGGTTGTTTCATAATGCTCAAACAAA 58.728 30.769 9.69 0.00 45.52 2.83
108 109 4.156556 TGCAGAGGTTGTTTCATAATGCTC 59.843 41.667 0.00 0.00 32.53 4.26
114 115 5.559770 TCAAGATGCAGAGGTTGTTTCATA 58.440 37.500 0.00 0.00 0.00 2.15
158 160 5.952347 GTGAAAGGGATTCCTCATAAGGTTT 59.048 40.000 0.00 0.00 44.07 3.27
162 164 4.578105 GCAGTGAAAGGGATTCCTCATAAG 59.422 45.833 0.00 0.00 44.07 1.73
176 178 4.380233 GGAAAGATGGTGATGCAGTGAAAG 60.380 45.833 0.00 0.00 0.00 2.62
177 179 3.507233 GGAAAGATGGTGATGCAGTGAAA 59.493 43.478 0.00 0.00 0.00 2.69
183 185 3.657398 AGATGGAAAGATGGTGATGCA 57.343 42.857 0.00 0.00 0.00 3.96
240 242 6.985188 TGTGTTCTATGCTGAAAGGATTAC 57.015 37.500 0.00 0.00 45.52 1.89
253 255 9.409312 TGTTTGCAAGAATAATTGTGTTCTATG 57.591 29.630 0.00 5.89 34.39 2.23
255 257 9.409312 CATGTTTGCAAGAATAATTGTGTTCTA 57.591 29.630 0.00 0.00 34.39 2.10
273 275 9.701098 ATTAAATATGATGTGATCCATGTTTGC 57.299 29.630 11.81 0.00 35.73 3.68
287 289 6.502652 TGTGCGGTTGGAATTAAATATGATG 58.497 36.000 0.00 0.00 0.00 3.07
295 297 4.920640 TTCTTTGTGCGGTTGGAATTAA 57.079 36.364 0.00 0.00 0.00 1.40
296 298 4.920640 TTTCTTTGTGCGGTTGGAATTA 57.079 36.364 0.00 0.00 0.00 1.40
337 339 4.060900 GTTGTGTCTGAGATGTCACACAT 58.939 43.478 14.53 0.00 42.43 3.21
344 346 3.845781 ACTTGGTTGTGTCTGAGATGT 57.154 42.857 0.00 0.00 0.00 3.06
347 349 4.161565 ACTGTTACTTGGTTGTGTCTGAGA 59.838 41.667 0.00 0.00 0.00 3.27
355 357 3.530265 TCGTGACTGTTACTTGGTTGT 57.470 42.857 1.13 0.00 0.00 3.32
358 360 4.696402 TGTTTTTCGTGACTGTTACTTGGT 59.304 37.500 1.13 0.00 0.00 3.67
360 362 5.864986 ACTGTTTTTCGTGACTGTTACTTG 58.135 37.500 1.13 0.00 0.00 3.16
362 364 5.172934 TGACTGTTTTTCGTGACTGTTACT 58.827 37.500 1.13 0.00 0.00 2.24
364 366 5.813157 TGATGACTGTTTTTCGTGACTGTTA 59.187 36.000 0.00 0.00 0.00 2.41
367 369 4.794248 TGATGACTGTTTTTCGTGACTG 57.206 40.909 0.00 0.00 0.00 3.51
369 371 4.386230 CGATGATGACTGTTTTTCGTGAC 58.614 43.478 0.00 0.00 0.00 3.67
375 377 3.758023 TGGATGCGATGATGACTGTTTTT 59.242 39.130 0.00 0.00 0.00 1.94
379 381 2.696989 TTGGATGCGATGATGACTGT 57.303 45.000 0.00 0.00 0.00 3.55
383 385 4.581409 ACAAATCATTGGATGCGATGATGA 59.419 37.500 25.66 11.51 40.98 2.92
386 388 4.987408 AACAAATCATTGGATGCGATGA 57.013 36.364 18.41 18.41 41.01 2.92
396 398 7.335171 TCTCAGTGGATGACTAACAAATCATTG 59.665 37.037 0.00 0.00 35.67 2.82
408 410 4.081752 GTGAAGACATCTCAGTGGATGACT 60.082 45.833 21.37 18.27 45.29 3.41
454 456 9.433153 GGTAGTAAGTTGTCAGTATTTTTAGCT 57.567 33.333 0.00 0.00 0.00 3.32
460 462 5.867716 CGCAGGTAGTAAGTTGTCAGTATTT 59.132 40.000 0.00 0.00 0.00 1.40
485 487 0.453950 GAGCAATGCAACGCAGTCAG 60.454 55.000 8.35 0.00 45.00 3.51
490 492 1.007502 GTTGGAGCAATGCAACGCA 60.008 52.632 8.35 0.00 44.86 5.24
510 515 4.210724 ACAAGAAAAATGATGGGCCATG 57.789 40.909 26.77 9.49 0.00 3.66
511 516 5.025453 ACTACAAGAAAAATGATGGGCCAT 58.975 37.500 21.39 21.39 0.00 4.40
530 536 8.741841 AGTAATTTGGAACAGAGAGAGTACTAC 58.258 37.037 0.00 0.00 42.39 2.73
531 537 8.880991 AGTAATTTGGAACAGAGAGAGTACTA 57.119 34.615 0.00 0.00 42.39 1.82
532 538 7.362229 CGAGTAATTTGGAACAGAGAGAGTACT 60.362 40.741 0.00 0.00 42.39 2.73
533 539 6.748198 CGAGTAATTTGGAACAGAGAGAGTAC 59.252 42.308 0.00 0.00 42.39 2.73
534 540 6.433404 ACGAGTAATTTGGAACAGAGAGAGTA 59.567 38.462 0.00 0.00 42.39 2.59
535 541 5.244178 ACGAGTAATTTGGAACAGAGAGAGT 59.756 40.000 0.00 0.00 42.39 3.24
536 542 5.715070 ACGAGTAATTTGGAACAGAGAGAG 58.285 41.667 0.00 0.00 42.39 3.20
537 543 5.243060 TGACGAGTAATTTGGAACAGAGAGA 59.757 40.000 0.00 0.00 42.39 3.10
538 544 5.470368 TGACGAGTAATTTGGAACAGAGAG 58.530 41.667 0.00 0.00 42.39 3.20
539 545 5.462530 TGACGAGTAATTTGGAACAGAGA 57.537 39.130 0.00 0.00 42.39 3.10
540 546 5.869344 TCATGACGAGTAATTTGGAACAGAG 59.131 40.000 0.00 0.00 42.39 3.35
541 547 5.789521 TCATGACGAGTAATTTGGAACAGA 58.210 37.500 0.00 0.00 42.39 3.41
542 548 6.099579 CTCATGACGAGTAATTTGGAACAG 57.900 41.667 0.00 0.00 36.87 3.16
556 562 5.739959 TCCATTCCAAATTACTCATGACGA 58.260 37.500 0.00 0.00 0.00 4.20
557 563 5.008019 CCTCCATTCCAAATTACTCATGACG 59.992 44.000 0.00 0.00 0.00 4.35
558 564 5.300286 CCCTCCATTCCAAATTACTCATGAC 59.700 44.000 0.00 0.00 0.00 3.06
559 565 5.193527 TCCCTCCATTCCAAATTACTCATGA 59.806 40.000 0.00 0.00 0.00 3.07
560 566 5.448654 TCCCTCCATTCCAAATTACTCATG 58.551 41.667 0.00 0.00 0.00 3.07
561 567 5.194537 ACTCCCTCCATTCCAAATTACTCAT 59.805 40.000 0.00 0.00 0.00 2.90
562 568 4.540099 ACTCCCTCCATTCCAAATTACTCA 59.460 41.667 0.00 0.00 0.00 3.41
563 569 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
564 570 6.848562 ATACTCCCTCCATTCCAAATTACT 57.151 37.500 0.00 0.00 0.00 2.24
565 571 8.164070 ACATATACTCCCTCCATTCCAAATTAC 58.836 37.037 0.00 0.00 0.00 1.89
566 572 8.163408 CACATATACTCCCTCCATTCCAAATTA 58.837 37.037 0.00 0.00 0.00 1.40
567 573 7.006509 CACATATACTCCCTCCATTCCAAATT 58.993 38.462 0.00 0.00 0.00 1.82
568 574 6.103205 ACACATATACTCCCTCCATTCCAAAT 59.897 38.462 0.00 0.00 0.00 2.32
569 575 5.431731 ACACATATACTCCCTCCATTCCAAA 59.568 40.000 0.00 0.00 0.00 3.28
570 576 4.975147 ACACATATACTCCCTCCATTCCAA 59.025 41.667 0.00 0.00 0.00 3.53
571 577 4.566837 ACACATATACTCCCTCCATTCCA 58.433 43.478 0.00 0.00 0.00 3.53
572 578 6.681729 TTACACATATACTCCCTCCATTCC 57.318 41.667 0.00 0.00 0.00 3.01
573 579 6.014156 AGCTTACACATATACTCCCTCCATTC 60.014 42.308 0.00 0.00 0.00 2.67
574 580 5.846714 AGCTTACACATATACTCCCTCCATT 59.153 40.000 0.00 0.00 0.00 3.16
575 581 5.407049 AGCTTACACATATACTCCCTCCAT 58.593 41.667 0.00 0.00 0.00 3.41
576 582 4.816126 AGCTTACACATATACTCCCTCCA 58.184 43.478 0.00 0.00 0.00 3.86
577 583 5.081032 AGAGCTTACACATATACTCCCTCC 58.919 45.833 0.00 0.00 0.00 4.30
578 584 5.106475 CGAGAGCTTACACATATACTCCCTC 60.106 48.000 0.00 0.00 0.00 4.30
579 585 4.762765 CGAGAGCTTACACATATACTCCCT 59.237 45.833 0.00 0.00 0.00 4.20
580 586 4.760715 TCGAGAGCTTACACATATACTCCC 59.239 45.833 0.00 0.00 0.00 4.30
581 587 5.943706 TCGAGAGCTTACACATATACTCC 57.056 43.478 0.00 0.00 0.00 3.85
582 588 7.863375 ACATTTCGAGAGCTTACACATATACTC 59.137 37.037 0.00 0.00 0.00 2.59
583 589 7.649705 CACATTTCGAGAGCTTACACATATACT 59.350 37.037 0.00 0.00 0.00 2.12
584 590 7.567771 GCACATTTCGAGAGCTTACACATATAC 60.568 40.741 0.00 0.00 0.00 1.47
585 591 6.420903 GCACATTTCGAGAGCTTACACATATA 59.579 38.462 0.00 0.00 0.00 0.86
586 592 5.235186 GCACATTTCGAGAGCTTACACATAT 59.765 40.000 0.00 0.00 0.00 1.78
587 593 4.566759 GCACATTTCGAGAGCTTACACATA 59.433 41.667 0.00 0.00 0.00 2.29
588 594 3.372206 GCACATTTCGAGAGCTTACACAT 59.628 43.478 0.00 0.00 0.00 3.21
589 595 2.736721 GCACATTTCGAGAGCTTACACA 59.263 45.455 0.00 0.00 0.00 3.72
590 596 2.222596 CGCACATTTCGAGAGCTTACAC 60.223 50.000 0.00 0.00 0.00 2.90
591 597 1.992667 CGCACATTTCGAGAGCTTACA 59.007 47.619 0.00 0.00 0.00 2.41
592 598 2.259618 TCGCACATTTCGAGAGCTTAC 58.740 47.619 0.00 0.00 0.00 2.34
593 599 2.647529 TCGCACATTTCGAGAGCTTA 57.352 45.000 0.00 0.00 0.00 3.09
594 600 3.514777 TCGCACATTTCGAGAGCTT 57.485 47.368 0.00 0.00 0.00 3.74
604 610 4.558470 CGTTTTATGAAATGCTCGCACATT 59.442 37.500 0.00 0.00 42.01 2.71
605 611 4.097714 CGTTTTATGAAATGCTCGCACAT 58.902 39.130 0.00 0.00 0.00 3.21
606 612 3.187432 TCGTTTTATGAAATGCTCGCACA 59.813 39.130 0.00 0.00 32.86 4.57
607 613 3.742786 TCGTTTTATGAAATGCTCGCAC 58.257 40.909 0.00 0.00 32.86 5.34
608 614 4.614555 ATCGTTTTATGAAATGCTCGCA 57.385 36.364 0.00 0.00 32.86 5.10
609 615 5.932021 AAATCGTTTTATGAAATGCTCGC 57.068 34.783 0.00 0.00 32.86 5.03
610 616 6.171006 GCAAAATCGTTTTATGAAATGCTCG 58.829 36.000 0.00 0.00 32.86 5.03
611 617 6.033407 TCGCAAAATCGTTTTATGAAATGCTC 59.967 34.615 8.56 0.00 32.86 4.26
612 618 5.861251 TCGCAAAATCGTTTTATGAAATGCT 59.139 32.000 8.56 0.00 32.86 3.79
613 619 6.076772 TCGCAAAATCGTTTTATGAAATGC 57.923 33.333 0.00 0.00 32.86 3.56
614 620 9.186938 GAAATCGCAAAATCGTTTTATGAAATG 57.813 29.630 0.00 0.00 33.26 2.32
615 621 9.139174 AGAAATCGCAAAATCGTTTTATGAAAT 57.861 25.926 0.00 0.00 33.26 2.17
616 622 8.514136 AGAAATCGCAAAATCGTTTTATGAAA 57.486 26.923 0.00 0.00 33.26 2.69
617 623 9.272901 CTAGAAATCGCAAAATCGTTTTATGAA 57.727 29.630 0.00 0.00 33.26 2.57
618 624 7.428183 GCTAGAAATCGCAAAATCGTTTTATGA 59.572 33.333 0.00 0.00 33.26 2.15
619 625 7.305418 GGCTAGAAATCGCAAAATCGTTTTATG 60.305 37.037 0.00 0.00 33.26 1.90
620 626 6.691388 GGCTAGAAATCGCAAAATCGTTTTAT 59.309 34.615 0.00 0.00 33.26 1.40
658 664 4.024218 CAGAAGAAAGCACCTCAAGTTGAG 60.024 45.833 23.58 23.58 43.91 3.02
684 691 1.741770 CAAGGGAAGGGTTCGCGAG 60.742 63.158 9.59 0.00 46.14 5.03
689 696 1.357761 TGGGAATCAAGGGAAGGGTTC 59.642 52.381 0.00 0.00 0.00 3.62
762 769 5.163513 GTGACCGCATCTCAAAATTCAAAT 58.836 37.500 0.00 0.00 0.00 2.32
1160 1186 4.078516 GTAGGGCGGGTGAAGCGT 62.079 66.667 0.00 0.00 35.00 5.07
1164 1190 3.006728 CAGGGTAGGGCGGGTGAA 61.007 66.667 0.00 0.00 0.00 3.18
1228 1257 0.388134 CTTGTACCTACACACGCGCT 60.388 55.000 5.73 0.00 35.64 5.92
1236 1265 2.173519 CCGGTTCTCCTTGTACCTACA 58.826 52.381 0.00 0.00 34.42 2.74
1335 1364 1.551019 AACCCTTCCTGTAGGCCGAC 61.551 60.000 9.38 9.38 33.73 4.79
1712 1807 4.676951 ACACCATGCCCCCAACCG 62.677 66.667 0.00 0.00 0.00 4.44
1740 1835 8.039603 TCGCAAACAAAGTAAGACAATATCAT 57.960 30.769 0.00 0.00 0.00 2.45
1752 1847 3.375610 TGCTCAAGTTCGCAAACAAAGTA 59.624 39.130 0.00 0.00 37.88 2.24
1779 1874 3.463048 TTTAGGAACGGAGGGAGTACT 57.537 47.619 0.00 0.00 0.00 2.73
1780 1875 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
1781 1876 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
1782 1877 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
1783 1878 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
1784 1879 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
1785 1880 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1786 1881 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
1804 1899 9.396022 TCACTTGTTGAAATCTCTAAAAAGACT 57.604 29.630 0.00 0.00 0.00 3.24
1805 1900 9.439537 GTCACTTGTTGAAATCTCTAAAAAGAC 57.560 33.333 0.00 0.00 35.39 3.01
1806 1901 9.396022 AGTCACTTGTTGAAATCTCTAAAAAGA 57.604 29.630 0.00 0.00 35.39 2.52
1809 1904 9.607988 TGTAGTCACTTGTTGAAATCTCTAAAA 57.392 29.630 0.00 0.00 35.39 1.52
1810 1905 9.778741 ATGTAGTCACTTGTTGAAATCTCTAAA 57.221 29.630 0.00 0.00 35.39 1.85
1812 1907 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
1813 1908 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
1814 1909 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
1815 1910 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
1816 1911 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
1817 1912 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
1818 1913 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
1819 1914 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
1820 1915 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
1821 1916 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
1822 1917 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
1823 1918 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
1824 1919 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
1825 1920 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
1826 1921 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
1827 1922 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
1828 1923 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
1829 1924 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1830 1925 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1831 1926 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1832 1927 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1833 1928 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1834 1929 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1835 1930 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1836 1931 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1837 1932 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1838 1933 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1839 1934 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1840 1935 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1879 1974 8.826710 CAAATGGACTACAACATACGAATGTAT 58.173 33.333 0.00 0.00 45.79 2.29
1880 1975 8.035984 TCAAATGGACTACAACATACGAATGTA 58.964 33.333 0.00 0.00 45.79 2.29
1882 1977 7.302350 TCAAATGGACTACAACATACGAATG 57.698 36.000 0.00 0.00 39.17 2.67
1883 1978 7.915293 TTCAAATGGACTACAACATACGAAT 57.085 32.000 0.00 0.00 0.00 3.34
1884 1979 7.731882 TTTCAAATGGACTACAACATACGAA 57.268 32.000 0.00 0.00 0.00 3.85
1885 1980 7.389330 ACATTTCAAATGGACTACAACATACGA 59.611 33.333 14.70 0.00 0.00 3.43
1886 1981 7.526608 ACATTTCAAATGGACTACAACATACG 58.473 34.615 14.70 0.00 0.00 3.06
1887 1982 8.730680 AGACATTTCAAATGGACTACAACATAC 58.269 33.333 14.70 0.00 0.00 2.39
1888 1983 8.862325 AGACATTTCAAATGGACTACAACATA 57.138 30.769 14.70 0.00 0.00 2.29
1889 1984 7.765695 AGACATTTCAAATGGACTACAACAT 57.234 32.000 14.70 0.00 0.00 2.71
1890 1985 8.684386 TTAGACATTTCAAATGGACTACAACA 57.316 30.769 14.70 1.25 0.00 3.33
1891 1986 9.959749 TTTTAGACATTTCAAATGGACTACAAC 57.040 29.630 14.70 0.00 0.00 3.32
1896 1991 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
1897 1992 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
1915 2010 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
1916 2011 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
1917 2012 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
1918 2013 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
1919 2014 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
1920 2015 9.327731 CTACTCCCTCCATTCCTAAATATAAGT 57.672 37.037 0.00 0.00 0.00 2.24
1921 2016 9.548631 TCTACTCCCTCCATTCCTAAATATAAG 57.451 37.037 0.00 0.00 0.00 1.73
1922 2017 9.907819 TTCTACTCCCTCCATTCCTAAATATAA 57.092 33.333 0.00 0.00 0.00 0.98
1923 2018 9.907819 TTTCTACTCCCTCCATTCCTAAATATA 57.092 33.333 0.00 0.00 0.00 0.86
1924 2019 8.814448 TTTCTACTCCCTCCATTCCTAAATAT 57.186 34.615 0.00 0.00 0.00 1.28
1925 2020 7.849904 ACTTTCTACTCCCTCCATTCCTAAATA 59.150 37.037 0.00 0.00 0.00 1.40
1926 2021 6.678857 ACTTTCTACTCCCTCCATTCCTAAAT 59.321 38.462 0.00 0.00 0.00 1.40
1927 2022 6.030082 ACTTTCTACTCCCTCCATTCCTAAA 58.970 40.000 0.00 0.00 0.00 1.85
1928 2023 5.600749 ACTTTCTACTCCCTCCATTCCTAA 58.399 41.667 0.00 0.00 0.00 2.69
1929 2024 5.222278 ACTTTCTACTCCCTCCATTCCTA 57.778 43.478 0.00 0.00 0.00 2.94
1930 2025 4.081695 ACTTTCTACTCCCTCCATTCCT 57.918 45.455 0.00 0.00 0.00 3.36
1931 2026 4.345547 CCTACTTTCTACTCCCTCCATTCC 59.654 50.000 0.00 0.00 0.00 3.01
1932 2027 5.069383 GTCCTACTTTCTACTCCCTCCATTC 59.931 48.000 0.00 0.00 0.00 2.67
1933 2028 4.963628 GTCCTACTTTCTACTCCCTCCATT 59.036 45.833 0.00 0.00 0.00 3.16
1934 2029 4.016479 TGTCCTACTTTCTACTCCCTCCAT 60.016 45.833 0.00 0.00 0.00 3.41
1935 2030 3.335786 TGTCCTACTTTCTACTCCCTCCA 59.664 47.826 0.00 0.00 0.00 3.86
1936 2031 3.955551 CTGTCCTACTTTCTACTCCCTCC 59.044 52.174 0.00 0.00 0.00 4.30
1937 2032 4.602107 ACTGTCCTACTTTCTACTCCCTC 58.398 47.826 0.00 0.00 0.00 4.30
1938 2033 4.678538 ACTGTCCTACTTTCTACTCCCT 57.321 45.455 0.00 0.00 0.00 4.20
1939 2034 4.338964 GCTACTGTCCTACTTTCTACTCCC 59.661 50.000 0.00 0.00 0.00 4.30
1940 2035 4.948621 TGCTACTGTCCTACTTTCTACTCC 59.051 45.833 0.00 0.00 0.00 3.85
1941 2036 6.512342 TTGCTACTGTCCTACTTTCTACTC 57.488 41.667 0.00 0.00 0.00 2.59
2094 2189 4.067192 GCAAGACGTAGGGGAGTTAAAAA 58.933 43.478 0.00 0.00 0.00 1.94
2095 2190 3.071312 TGCAAGACGTAGGGGAGTTAAAA 59.929 43.478 0.00 0.00 0.00 1.52
2140 2235 4.038282 GGCATGGAATCATAAGCAACATGA 59.962 41.667 0.00 0.00 37.10 3.07
2162 2257 3.192844 AGTGCTGCATTTTCTGAAGATGG 59.807 43.478 18.93 7.60 31.16 3.51
2377 2472 7.639850 CGTTGCTACCAGTATTTATTTGACATG 59.360 37.037 0.00 0.00 0.00 3.21
2407 2502 4.380867 CCACCACTTGCCATTCATAAAGTC 60.381 45.833 0.00 0.00 30.59 3.01
2747 2842 4.666512 ACTAAAGGCACAGATCACCAATT 58.333 39.130 0.00 0.00 0.00 2.32
2863 2977 5.946942 ACTGAAAGGAGATAGAAGCATCA 57.053 39.130 0.00 0.00 39.30 3.07
2908 3022 9.529325 CGTATACAATTTGATTCAAGACCTAGA 57.471 33.333 2.79 0.00 0.00 2.43
3165 3375 5.185668 TGTGACACCAAGAATGTTGAATG 57.814 39.130 2.45 0.00 0.00 2.67
3204 3414 5.125417 GCCAGCAAAAACCTGATAAGATACA 59.875 40.000 0.00 0.00 32.03 2.29
3285 3499 3.056107 CCGGTCAAGAGAATCAACCACTA 60.056 47.826 0.00 0.00 37.82 2.74
3589 3804 2.637872 AGAACCAACTGATTCGGAAGGA 59.362 45.455 12.69 0.00 0.00 3.36
3590 3805 3.059352 AGAACCAACTGATTCGGAAGG 57.941 47.619 0.00 3.23 0.00 3.46
3595 3810 9.098355 TCTATTCAATTAGAACCAACTGATTCG 57.902 33.333 0.00 0.00 39.49 3.34
3675 3890 2.225068 ACCAAGAGAACTGTCACACG 57.775 50.000 0.00 0.00 0.00 4.49
3676 3891 3.531538 TCAACCAAGAGAACTGTCACAC 58.468 45.455 0.00 0.00 0.00 3.82
3706 3923 2.286365 TTGAACAGATTTTCGCCCCT 57.714 45.000 0.00 0.00 0.00 4.79
3709 3926 6.523676 TGAAATTTTGAACAGATTTTCGCC 57.476 33.333 0.00 0.00 0.00 5.54
3711 3928 9.023967 AGACTTGAAATTTTGAACAGATTTTCG 57.976 29.630 0.00 0.00 0.00 3.46
3715 3932 9.305925 GTTGAGACTTGAAATTTTGAACAGATT 57.694 29.630 0.00 0.00 0.00 2.40
3716 3933 7.645340 CGTTGAGACTTGAAATTTTGAACAGAT 59.355 33.333 0.00 0.00 0.00 2.90
3718 3935 6.291269 GCGTTGAGACTTGAAATTTTGAACAG 60.291 38.462 0.00 0.00 0.00 3.16
3720 3937 5.514914 TGCGTTGAGACTTGAAATTTTGAAC 59.485 36.000 0.00 0.00 0.00 3.18
3811 4030 0.025513 CTGCTAAGCGCTTAAGCACG 59.974 55.000 32.01 26.08 42.21 5.34
3866 4085 3.105283 TCTCCTTTGACTAACCCTAGGC 58.895 50.000 2.05 0.00 33.18 3.93
3897 4116 2.155279 GACTTGCTCTCCTTTGTTCCC 58.845 52.381 0.00 0.00 0.00 3.97
3899 4118 3.496507 GTCTGACTTGCTCTCCTTTGTTC 59.503 47.826 0.00 0.00 0.00 3.18
3968 4212 0.320508 GTCAGGGAACGGGAACTCAC 60.321 60.000 0.00 0.00 0.00 3.51
3973 4217 1.152204 TGAGGTCAGGGAACGGGAA 60.152 57.895 0.00 0.00 0.00 3.97
3984 4228 0.037326 CACCTTAAGCGCTGAGGTCA 60.037 55.000 31.88 3.37 41.72 4.02
3991 4235 0.804989 GCAATGACACCTTAAGCGCT 59.195 50.000 2.64 2.64 0.00 5.92
3992 4236 0.521291 TGCAATGACACCTTAAGCGC 59.479 50.000 0.00 0.00 0.00 5.92
4102 4902 4.929808 AGCATCTTTTGTGTAGGAGTAACG 59.070 41.667 0.00 0.00 0.00 3.18
4119 4919 3.430042 AACAGTCAATGTCCAGCATCT 57.570 42.857 0.00 0.00 43.00 2.90
4203 5003 1.376543 AGCAGCACATCTCCAAATCG 58.623 50.000 0.00 0.00 0.00 3.34
4209 5009 2.260247 TGCAAAGCAGCACATCTCC 58.740 52.632 0.00 0.00 40.11 3.71
4229 5029 0.719465 GTAGCGATCCAAACACACCG 59.281 55.000 0.00 0.00 0.00 4.94
4230 5030 1.084289 GGTAGCGATCCAAACACACC 58.916 55.000 0.00 0.00 0.00 4.16
4231 5031 0.719465 CGGTAGCGATCCAAACACAC 59.281 55.000 9.07 0.00 0.00 3.82
4232 5032 0.319083 ACGGTAGCGATCCAAACACA 59.681 50.000 22.88 0.00 0.00 3.72
4233 5033 0.719465 CACGGTAGCGATCCAAACAC 59.281 55.000 22.88 0.00 0.00 3.32
4234 5034 0.604073 TCACGGTAGCGATCCAAACA 59.396 50.000 22.88 0.00 0.00 2.83
4235 5035 1.278238 CTCACGGTAGCGATCCAAAC 58.722 55.000 22.88 0.00 0.00 2.93
4236 5036 0.459585 GCTCACGGTAGCGATCCAAA 60.460 55.000 22.88 0.00 31.76 3.28
4237 5037 1.141019 GCTCACGGTAGCGATCCAA 59.859 57.895 22.88 0.29 31.76 3.53
4238 5038 2.805546 GCTCACGGTAGCGATCCA 59.194 61.111 22.88 0.29 31.76 3.41
4244 5044 4.082523 TGGGCAGCTCACGGTAGC 62.083 66.667 0.00 3.25 43.11 3.58
4245 5045 2.185350 CTGGGCAGCTCACGGTAG 59.815 66.667 0.00 0.00 0.00 3.18
4276 5076 2.550487 TACCAATGCAGCGGTCAAC 58.450 52.632 12.85 0.00 36.69 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.