Multiple sequence alignment - TraesCS7A01G312200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G312200 chr7A 100.000 4656 0 0 1 4656 442981251 442976596 0.000000e+00 8599
1 TraesCS7A01G312200 chr7A 91.883 308 24 1 128 435 696986080 696986386 3.330000e-116 429
2 TraesCS7A01G312200 chr7B 96.361 3188 75 19 482 3658 387674635 387671478 0.000000e+00 5206
3 TraesCS7A01G312200 chr7B 95.940 862 31 3 3797 4656 387671407 387670548 0.000000e+00 1395
4 TraesCS7A01G312200 chr7D 97.314 2494 56 7 1201 3687 390932380 390929891 0.000000e+00 4224
5 TraesCS7A01G312200 chr7D 95.342 687 19 5 467 1150 390933064 390932388 0.000000e+00 1079
6 TraesCS7A01G312200 chr7D 94.016 635 32 4 3705 4334 390929785 390929152 0.000000e+00 957
7 TraesCS7A01G312200 chr7D 88.889 171 9 6 4491 4652 390929161 390928992 7.900000e-48 202
8 TraesCS7A01G312200 chr3A 91.531 307 24 2 128 434 726338799 726339103 5.570000e-114 422
9 TraesCS7A01G312200 chr3A 95.000 100 3 2 3659 3757 647618184 647618282 6.240000e-34 156
10 TraesCS7A01G312200 chr4A 91.205 307 25 2 128 434 631371717 631371413 2.590000e-112 416
11 TraesCS7A01G312200 chr5A 90.909 308 26 2 128 435 299295102 299294797 3.350000e-111 412
12 TraesCS7A01G312200 chr5A 89.809 314 28 4 126 439 139481497 139481188 2.610000e-107 399
13 TraesCS7A01G312200 chr2A 90.850 306 26 2 125 430 43004223 43004526 4.340000e-110 409
14 TraesCS7A01G312200 chr2A 90.190 316 26 5 128 442 472249010 472249321 1.560000e-109 407
15 TraesCS7A01G312200 chr2A 90.323 310 27 3 125 434 42930531 42930837 2.020000e-108 403
16 TraesCS7A01G312200 chr2A 90.323 310 27 3 125 434 42960545 42960851 2.020000e-108 403
17 TraesCS7A01G312200 chr5D 95.918 98 3 1 3659 3755 205794742 205794645 1.730000e-34 158
18 TraesCS7A01G312200 chr5D 94.898 98 4 1 3659 3755 558970531 558970434 8.070000e-33 152
19 TraesCS7A01G312200 chr1D 95.050 101 3 2 3659 3757 483907678 483907578 1.730000e-34 158
20 TraesCS7A01G312200 chr6D 95.000 100 4 1 3659 3757 18672181 18672082 6.240000e-34 156
21 TraesCS7A01G312200 chr6B 94.118 102 5 1 3659 3759 529769702 529769803 2.240000e-33 154
22 TraesCS7A01G312200 chr6A 94.898 98 4 1 3658 3754 457850469 457850372 8.070000e-33 152
23 TraesCS7A01G312200 chr3B 94.059 101 5 1 3659 3758 614918728 614918628 8.070000e-33 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G312200 chr7A 442976596 442981251 4655 True 8599.0 8599 100.00000 1 4656 1 chr7A.!!$R1 4655
1 TraesCS7A01G312200 chr7B 387670548 387674635 4087 True 3300.5 5206 96.15050 482 4656 2 chr7B.!!$R1 4174
2 TraesCS7A01G312200 chr7D 390928992 390933064 4072 True 1615.5 4224 93.89025 467 4652 4 chr7D.!!$R1 4185

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
111 112 0.034198 TTCATTCCACGCGGACTTGA 59.966 50.000 12.47 3.87 42.67 3.02 F
363 364 0.036388 AAGGATAGGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82 F
450 451 0.102300 AAAAGACTGGCAACCGCAAC 59.898 50.000 0.00 0.00 41.24 4.17 F
456 457 0.945265 CTGGCAACCGCAACCAAATG 60.945 55.000 0.00 0.00 41.24 2.32 F
829 830 1.078426 CCCGCCCAACTCTACTTGG 60.078 63.158 0.00 0.00 40.57 3.61 F
2420 2428 0.964358 AGCCTTGCTGTGAAGGATGC 60.964 55.000 4.77 0.00 44.87 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1257 1261 1.678101 GCTTCATCCATAACAGGGCAC 59.322 52.381 0.00 0.0 0.00 5.01 R
1415 1419 2.357009 AGCAGTTTTCAGCACAAGTCTG 59.643 45.455 0.00 0.0 34.70 3.51 R
1422 1426 3.399330 TGGTAGTAGCAGTTTTCAGCAC 58.601 45.455 0.00 0.0 34.70 4.40 R
2179 2187 4.521639 GCCAATGGAGCATATTGAATGAGA 59.478 41.667 2.05 0.0 37.65 3.27 R
2743 2751 1.909302 TCTCCCTCTTGACCACCAATC 59.091 52.381 0.00 0.0 33.68 2.67 R
3974 4105 0.179045 GACTGCTGGGAACGCCATAT 60.179 55.000 0.00 0.0 35.15 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.955609 AAATGACCGATTTGGCCGT 58.044 47.368 0.00 0.00 43.94 5.68
19 20 1.253100 AAATGACCGATTTGGCCGTT 58.747 45.000 0.00 0.00 43.94 4.44
20 21 1.253100 AATGACCGATTTGGCCGTTT 58.747 45.000 0.00 0.00 43.94 3.60
21 22 0.808755 ATGACCGATTTGGCCGTTTC 59.191 50.000 0.00 0.00 43.94 2.78
22 23 0.250553 TGACCGATTTGGCCGTTTCT 60.251 50.000 0.00 0.00 43.94 2.52
23 24 1.002201 TGACCGATTTGGCCGTTTCTA 59.998 47.619 0.00 0.00 43.94 2.10
24 25 2.078392 GACCGATTTGGCCGTTTCTAA 58.922 47.619 0.00 0.00 43.94 2.10
25 26 2.681344 GACCGATTTGGCCGTTTCTAAT 59.319 45.455 0.00 0.00 43.94 1.73
26 27 2.422127 ACCGATTTGGCCGTTTCTAATG 59.578 45.455 0.00 0.00 43.94 1.90
27 28 2.223479 CCGATTTGGCCGTTTCTAATGG 60.223 50.000 0.00 0.00 40.68 3.16
28 29 2.223479 CGATTTGGCCGTTTCTAATGGG 60.223 50.000 0.00 0.00 38.05 4.00
31 32 4.657952 GCCGTTTCTAATGGGCCT 57.342 55.556 4.53 0.00 39.67 5.19
32 33 3.792712 GCCGTTTCTAATGGGCCTA 57.207 52.632 4.53 0.00 39.67 3.93
33 34 1.306148 GCCGTTTCTAATGGGCCTAC 58.694 55.000 4.53 0.00 39.67 3.18
34 35 1.963172 CCGTTTCTAATGGGCCTACC 58.037 55.000 4.53 0.00 40.81 3.18
35 36 1.489230 CCGTTTCTAATGGGCCTACCT 59.511 52.381 4.53 0.00 41.11 3.08
36 37 2.701951 CCGTTTCTAATGGGCCTACCTA 59.298 50.000 4.53 0.00 41.11 3.08
37 38 3.135167 CCGTTTCTAATGGGCCTACCTAA 59.865 47.826 4.53 0.00 41.11 2.69
38 39 4.377897 CGTTTCTAATGGGCCTACCTAAG 58.622 47.826 4.53 0.00 41.11 2.18
39 40 4.100498 CGTTTCTAATGGGCCTACCTAAGA 59.900 45.833 4.53 0.00 41.11 2.10
40 41 5.395990 CGTTTCTAATGGGCCTACCTAAGAA 60.396 44.000 4.53 1.34 41.11 2.52
41 42 6.420638 GTTTCTAATGGGCCTACCTAAGAAA 58.579 40.000 4.53 7.72 38.46 2.52
42 43 6.841781 TTCTAATGGGCCTACCTAAGAAAT 57.158 37.500 4.53 0.00 41.11 2.17
43 44 6.187727 TCTAATGGGCCTACCTAAGAAATG 57.812 41.667 4.53 0.00 41.11 2.32
44 45 4.881157 AATGGGCCTACCTAAGAAATGT 57.119 40.909 4.53 0.00 41.11 2.71
45 46 4.881157 ATGGGCCTACCTAAGAAATGTT 57.119 40.909 4.53 0.00 41.11 2.71
46 47 4.668138 TGGGCCTACCTAAGAAATGTTT 57.332 40.909 4.53 0.00 41.11 2.83
47 48 5.005628 TGGGCCTACCTAAGAAATGTTTT 57.994 39.130 4.53 0.00 41.11 2.43
48 49 6.142259 TGGGCCTACCTAAGAAATGTTTTA 57.858 37.500 4.53 0.00 41.11 1.52
49 50 6.553857 TGGGCCTACCTAAGAAATGTTTTAA 58.446 36.000 4.53 0.00 41.11 1.52
50 51 6.661805 TGGGCCTACCTAAGAAATGTTTTAAG 59.338 38.462 4.53 0.00 41.11 1.85
51 52 6.888088 GGGCCTACCTAAGAAATGTTTTAAGA 59.112 38.462 0.84 0.00 35.85 2.10
52 53 7.560262 GGGCCTACCTAAGAAATGTTTTAAGAT 59.440 37.037 0.84 0.00 35.85 2.40
53 54 8.967918 GGCCTACCTAAGAAATGTTTTAAGATT 58.032 33.333 0.00 0.00 0.00 2.40
64 65 9.144085 GAAATGTTTTAAGATTCGTACTATGCG 57.856 33.333 0.00 0.00 0.00 4.73
65 66 6.578020 TGTTTTAAGATTCGTACTATGCGG 57.422 37.500 0.00 0.00 0.00 5.69
66 67 6.331845 TGTTTTAAGATTCGTACTATGCGGA 58.668 36.000 0.00 0.00 0.00 5.54
67 68 6.254157 TGTTTTAAGATTCGTACTATGCGGAC 59.746 38.462 0.00 0.00 0.00 4.79
68 69 3.366440 AAGATTCGTACTATGCGGACC 57.634 47.619 0.00 0.00 0.00 4.46
69 70 2.304092 AGATTCGTACTATGCGGACCA 58.696 47.619 0.00 0.00 0.00 4.02
70 71 2.691526 AGATTCGTACTATGCGGACCAA 59.308 45.455 0.00 0.00 0.00 3.67
71 72 3.131577 AGATTCGTACTATGCGGACCAAA 59.868 43.478 0.00 0.00 0.00 3.28
72 73 2.282701 TCGTACTATGCGGACCAAAC 57.717 50.000 0.00 0.00 0.00 2.93
73 74 1.545136 TCGTACTATGCGGACCAAACA 59.455 47.619 0.00 0.00 0.00 2.83
74 75 1.924524 CGTACTATGCGGACCAAACAG 59.075 52.381 0.00 0.00 0.00 3.16
75 76 2.673043 CGTACTATGCGGACCAAACAGT 60.673 50.000 0.00 0.00 0.00 3.55
76 77 1.808411 ACTATGCGGACCAAACAGTG 58.192 50.000 0.00 0.00 0.00 3.66
77 78 1.346395 ACTATGCGGACCAAACAGTGA 59.654 47.619 0.00 0.00 0.00 3.41
78 79 2.224426 ACTATGCGGACCAAACAGTGAA 60.224 45.455 0.00 0.00 0.00 3.18
79 80 0.951558 ATGCGGACCAAACAGTGAAC 59.048 50.000 0.00 0.00 0.00 3.18
80 81 1.278637 GCGGACCAAACAGTGAACG 59.721 57.895 0.00 0.00 0.00 3.95
81 82 1.433837 GCGGACCAAACAGTGAACGT 61.434 55.000 0.00 0.00 0.00 3.99
82 83 1.855513 CGGACCAAACAGTGAACGTA 58.144 50.000 0.00 0.00 0.00 3.57
83 84 1.790623 CGGACCAAACAGTGAACGTAG 59.209 52.381 0.00 0.00 0.00 3.51
84 85 2.544277 CGGACCAAACAGTGAACGTAGA 60.544 50.000 0.00 0.00 0.00 2.59
85 86 3.057734 GGACCAAACAGTGAACGTAGAG 58.942 50.000 0.00 0.00 0.00 2.43
86 87 2.475487 GACCAAACAGTGAACGTAGAGC 59.525 50.000 0.00 0.00 0.00 4.09
87 88 1.798813 CCAAACAGTGAACGTAGAGCC 59.201 52.381 0.00 0.00 0.00 4.70
88 89 1.798813 CAAACAGTGAACGTAGAGCCC 59.201 52.381 0.00 0.00 0.00 5.19
89 90 1.045407 AACAGTGAACGTAGAGCCCA 58.955 50.000 0.00 0.00 0.00 5.36
90 91 1.267121 ACAGTGAACGTAGAGCCCAT 58.733 50.000 0.00 0.00 0.00 4.00
91 92 1.623811 ACAGTGAACGTAGAGCCCATT 59.376 47.619 0.00 0.00 0.00 3.16
92 93 2.038557 ACAGTGAACGTAGAGCCCATTT 59.961 45.455 0.00 0.00 0.00 2.32
93 94 3.074412 CAGTGAACGTAGAGCCCATTTT 58.926 45.455 0.00 0.00 0.00 1.82
94 95 3.125316 CAGTGAACGTAGAGCCCATTTTC 59.875 47.826 0.00 0.00 0.00 2.29
95 96 3.071479 GTGAACGTAGAGCCCATTTTCA 58.929 45.455 0.00 0.00 0.00 2.69
96 97 3.689649 GTGAACGTAGAGCCCATTTTCAT 59.310 43.478 0.00 0.00 0.00 2.57
97 98 4.156008 GTGAACGTAGAGCCCATTTTCATT 59.844 41.667 0.00 0.00 0.00 2.57
98 99 4.394920 TGAACGTAGAGCCCATTTTCATTC 59.605 41.667 0.00 0.00 0.00 2.67
99 100 3.279434 ACGTAGAGCCCATTTTCATTCC 58.721 45.455 0.00 0.00 0.00 3.01
100 101 3.278574 CGTAGAGCCCATTTTCATTCCA 58.721 45.455 0.00 0.00 0.00 3.53
101 102 3.065371 CGTAGAGCCCATTTTCATTCCAC 59.935 47.826 0.00 0.00 0.00 4.02
102 103 2.094675 AGAGCCCATTTTCATTCCACG 58.905 47.619 0.00 0.00 0.00 4.94
103 104 0.532115 AGCCCATTTTCATTCCACGC 59.468 50.000 0.00 0.00 0.00 5.34
104 105 0.801836 GCCCATTTTCATTCCACGCG 60.802 55.000 3.53 3.53 0.00 6.01
105 106 0.179140 CCCATTTTCATTCCACGCGG 60.179 55.000 12.47 0.00 0.00 6.46
106 107 0.808125 CCATTTTCATTCCACGCGGA 59.192 50.000 12.47 0.00 40.60 5.54
107 108 1.467374 CCATTTTCATTCCACGCGGAC 60.467 52.381 12.47 0.00 42.67 4.79
108 109 1.468520 CATTTTCATTCCACGCGGACT 59.531 47.619 12.47 0.00 42.67 3.85
109 110 1.600023 TTTTCATTCCACGCGGACTT 58.400 45.000 12.47 0.00 42.67 3.01
110 111 0.871722 TTTCATTCCACGCGGACTTG 59.128 50.000 12.47 0.00 42.67 3.16
111 112 0.034198 TTCATTCCACGCGGACTTGA 59.966 50.000 12.47 3.87 42.67 3.02
112 113 0.669318 TCATTCCACGCGGACTTGAC 60.669 55.000 12.47 0.00 42.67 3.18
113 114 0.670546 CATTCCACGCGGACTTGACT 60.671 55.000 12.47 0.00 42.67 3.41
114 115 0.670546 ATTCCACGCGGACTTGACTG 60.671 55.000 12.47 0.00 42.67 3.51
115 116 2.709125 TTCCACGCGGACTTGACTGG 62.709 60.000 12.47 6.40 42.67 4.00
116 117 3.414700 CACGCGGACTTGACTGGC 61.415 66.667 12.47 0.00 0.00 4.85
117 118 3.923864 ACGCGGACTTGACTGGCA 61.924 61.111 12.47 0.00 0.00 4.92
118 119 2.664851 CGCGGACTTGACTGGCAA 60.665 61.111 0.00 0.00 34.73 4.52
119 120 2.946762 GCGGACTTGACTGGCAAC 59.053 61.111 0.00 0.00 31.96 4.17
120 121 2.617274 GCGGACTTGACTGGCAACC 61.617 63.158 0.00 0.00 31.96 3.77
121 122 2.317609 CGGACTTGACTGGCAACCG 61.318 63.158 10.40 10.40 39.00 4.44
122 123 2.617274 GGACTTGACTGGCAACCGC 61.617 63.158 0.00 0.00 31.96 5.68
123 124 1.891919 GACTTGACTGGCAACCGCA 60.892 57.895 0.00 0.00 41.24 5.69
124 125 1.444119 GACTTGACTGGCAACCGCAA 61.444 55.000 0.00 0.00 41.24 4.85
125 126 1.008538 CTTGACTGGCAACCGCAAC 60.009 57.895 0.00 0.00 41.24 4.17
126 127 2.406452 CTTGACTGGCAACCGCAACC 62.406 60.000 0.00 0.00 41.24 3.77
127 128 4.025401 GACTGGCAACCGCAACCG 62.025 66.667 0.00 0.00 41.24 4.44
138 139 3.284449 GCAACCGCGAACCAACCT 61.284 61.111 8.23 0.00 0.00 3.50
139 140 2.841160 GCAACCGCGAACCAACCTT 61.841 57.895 8.23 0.00 0.00 3.50
140 141 1.731093 CAACCGCGAACCAACCTTT 59.269 52.632 8.23 0.00 0.00 3.11
141 142 0.593773 CAACCGCGAACCAACCTTTG 60.594 55.000 8.23 0.00 0.00 2.77
156 157 4.034285 ACCTTTGGTTGAGATGGTTAGG 57.966 45.455 0.00 0.00 27.29 2.69
157 158 3.397955 ACCTTTGGTTGAGATGGTTAGGT 59.602 43.478 0.00 0.00 27.29 3.08
158 159 3.758554 CCTTTGGTTGAGATGGTTAGGTG 59.241 47.826 0.00 0.00 0.00 4.00
159 160 3.433306 TTGGTTGAGATGGTTAGGTGG 57.567 47.619 0.00 0.00 0.00 4.61
160 161 2.626785 TGGTTGAGATGGTTAGGTGGA 58.373 47.619 0.00 0.00 0.00 4.02
161 162 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
162 163 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
163 164 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
164 165 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
165 166 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
166 167 2.832129 GAGATGGTTAGGTGGACAGTGA 59.168 50.000 0.00 0.00 0.00 3.41
167 168 3.452627 GAGATGGTTAGGTGGACAGTGAT 59.547 47.826 0.00 0.00 0.00 3.06
168 169 4.620723 AGATGGTTAGGTGGACAGTGATA 58.379 43.478 0.00 0.00 0.00 2.15
169 170 5.219739 AGATGGTTAGGTGGACAGTGATAT 58.780 41.667 0.00 0.00 0.00 1.63
170 171 5.305644 AGATGGTTAGGTGGACAGTGATATC 59.694 44.000 0.00 0.00 0.00 1.63
171 172 3.709653 TGGTTAGGTGGACAGTGATATCC 59.290 47.826 0.00 0.00 0.00 2.59
172 173 3.967987 GGTTAGGTGGACAGTGATATCCT 59.032 47.826 0.00 2.19 0.00 3.24
173 174 4.409247 GGTTAGGTGGACAGTGATATCCTT 59.591 45.833 0.00 0.00 0.00 3.36
174 175 5.601313 GGTTAGGTGGACAGTGATATCCTTA 59.399 44.000 0.00 0.00 0.00 2.69
175 176 6.099269 GGTTAGGTGGACAGTGATATCCTTAA 59.901 42.308 0.00 0.00 0.00 1.85
176 177 5.615925 AGGTGGACAGTGATATCCTTAAC 57.384 43.478 0.00 0.00 0.00 2.01
177 178 4.409247 AGGTGGACAGTGATATCCTTAACC 59.591 45.833 0.00 0.00 0.00 2.85
178 179 4.444449 GGTGGACAGTGATATCCTTAACCC 60.444 50.000 0.00 0.00 0.00 4.11
179 180 4.163458 GTGGACAGTGATATCCTTAACCCA 59.837 45.833 0.00 0.00 0.00 4.51
180 181 4.975147 TGGACAGTGATATCCTTAACCCAT 59.025 41.667 0.00 0.00 0.00 4.00
181 182 5.071788 TGGACAGTGATATCCTTAACCCATC 59.928 44.000 0.00 0.00 0.00 3.51
182 183 5.071788 GGACAGTGATATCCTTAACCCATCA 59.928 44.000 0.00 0.00 0.00 3.07
183 184 6.179906 ACAGTGATATCCTTAACCCATCAG 57.820 41.667 0.00 0.00 0.00 2.90
184 185 5.072329 ACAGTGATATCCTTAACCCATCAGG 59.928 44.000 0.00 0.00 43.78 3.86
200 201 3.363787 AGGGTTCAAATCCTGGTGC 57.636 52.632 0.00 0.00 38.36 5.01
201 202 0.779997 AGGGTTCAAATCCTGGTGCT 59.220 50.000 0.00 0.00 38.36 4.40
202 203 1.147817 AGGGTTCAAATCCTGGTGCTT 59.852 47.619 0.00 0.00 38.36 3.91
203 204 1.273327 GGGTTCAAATCCTGGTGCTTG 59.727 52.381 0.00 0.00 0.00 4.01
204 205 1.337167 GGTTCAAATCCTGGTGCTTGC 60.337 52.381 0.00 0.00 0.00 4.01
205 206 1.340889 GTTCAAATCCTGGTGCTTGCA 59.659 47.619 0.00 0.00 0.00 4.08
206 207 1.927487 TCAAATCCTGGTGCTTGCAT 58.073 45.000 0.00 0.00 0.00 3.96
207 208 2.250031 TCAAATCCTGGTGCTTGCATT 58.750 42.857 0.00 0.00 0.00 3.56
208 209 2.633967 TCAAATCCTGGTGCTTGCATTT 59.366 40.909 0.00 0.00 0.00 2.32
209 210 3.831333 TCAAATCCTGGTGCTTGCATTTA 59.169 39.130 0.00 0.00 0.00 1.40
210 211 4.467082 TCAAATCCTGGTGCTTGCATTTAT 59.533 37.500 0.00 0.00 0.00 1.40
211 212 4.660789 AATCCTGGTGCTTGCATTTATC 57.339 40.909 0.00 0.00 0.00 1.75
212 213 2.378038 TCCTGGTGCTTGCATTTATCC 58.622 47.619 0.00 0.00 0.00 2.59
213 214 2.025037 TCCTGGTGCTTGCATTTATCCT 60.025 45.455 0.00 0.00 0.00 3.24
214 215 2.100252 CCTGGTGCTTGCATTTATCCTG 59.900 50.000 0.00 0.00 0.00 3.86
215 216 3.018856 CTGGTGCTTGCATTTATCCTGA 58.981 45.455 0.00 0.00 0.00 3.86
216 217 3.429492 TGGTGCTTGCATTTATCCTGAA 58.571 40.909 0.00 0.00 0.00 3.02
217 218 4.025360 TGGTGCTTGCATTTATCCTGAAT 58.975 39.130 0.00 0.00 0.00 2.57
218 219 4.467082 TGGTGCTTGCATTTATCCTGAATT 59.533 37.500 0.00 0.00 0.00 2.17
219 220 5.046448 TGGTGCTTGCATTTATCCTGAATTT 60.046 36.000 0.00 0.00 0.00 1.82
220 221 6.154192 TGGTGCTTGCATTTATCCTGAATTTA 59.846 34.615 0.00 0.00 0.00 1.40
221 222 7.147689 TGGTGCTTGCATTTATCCTGAATTTAT 60.148 33.333 0.00 0.00 0.00 1.40
222 223 7.712205 GGTGCTTGCATTTATCCTGAATTTATT 59.288 33.333 0.00 0.00 0.00 1.40
223 224 9.101655 GTGCTTGCATTTATCCTGAATTTATTT 57.898 29.630 0.00 0.00 0.00 1.40
224 225 9.316730 TGCTTGCATTTATCCTGAATTTATTTC 57.683 29.630 0.00 0.00 34.72 2.17
225 226 9.316730 GCTTGCATTTATCCTGAATTTATTTCA 57.683 29.630 0.00 0.00 42.09 2.69
235 236 7.771183 TCCTGAATTTATTTCAAGAATTCCGG 58.229 34.615 0.65 0.00 43.64 5.14
236 237 6.476706 CCTGAATTTATTTCAAGAATTCCGGC 59.523 38.462 0.65 0.00 43.64 6.13
237 238 6.033341 TGAATTTATTTCAAGAATTCCGGCG 58.967 36.000 0.00 0.00 41.38 6.46
238 239 5.828299 ATTTATTTCAAGAATTCCGGCGA 57.172 34.783 9.30 0.00 0.00 5.54
239 240 5.828299 TTTATTTCAAGAATTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
240 241 6.928979 TTTATTTCAAGAATTCCGGCGATA 57.071 33.333 9.30 0.00 0.00 2.92
241 242 4.813296 ATTTCAAGAATTCCGGCGATAC 57.187 40.909 9.30 0.00 0.00 2.24
242 243 2.971660 TCAAGAATTCCGGCGATACA 57.028 45.000 9.30 0.00 0.00 2.29
243 244 2.546778 TCAAGAATTCCGGCGATACAC 58.453 47.619 9.30 0.00 0.00 2.90
244 245 2.167693 TCAAGAATTCCGGCGATACACT 59.832 45.455 9.30 0.00 0.00 3.55
245 246 2.936498 CAAGAATTCCGGCGATACACTT 59.064 45.455 9.30 5.63 0.00 3.16
246 247 3.261981 AGAATTCCGGCGATACACTTT 57.738 42.857 9.30 0.00 0.00 2.66
247 248 3.606687 AGAATTCCGGCGATACACTTTT 58.393 40.909 9.30 0.00 0.00 2.27
248 249 4.761975 AGAATTCCGGCGATACACTTTTA 58.238 39.130 9.30 0.00 0.00 1.52
249 250 4.809426 AGAATTCCGGCGATACACTTTTAG 59.191 41.667 9.30 0.00 0.00 1.85
250 251 3.598019 TTCCGGCGATACACTTTTAGT 57.402 42.857 9.30 0.00 0.00 2.24
262 263 4.559862 CACTTTTAGTGGGAGGAGACAT 57.440 45.455 0.00 0.00 42.35 3.06
263 264 4.911390 CACTTTTAGTGGGAGGAGACATT 58.089 43.478 0.00 0.00 42.35 2.71
264 265 4.938226 CACTTTTAGTGGGAGGAGACATTC 59.062 45.833 0.00 0.00 42.35 2.67
265 266 6.089517 CACTTTTAGTGGGAGGAGACATTCC 61.090 48.000 0.00 0.00 43.25 3.01
275 276 3.372660 GGAGACATTCCCATCGACTAC 57.627 52.381 0.00 0.00 40.37 2.73
276 277 2.693591 GGAGACATTCCCATCGACTACA 59.306 50.000 0.00 0.00 40.37 2.74
277 278 3.132289 GGAGACATTCCCATCGACTACAA 59.868 47.826 0.00 0.00 40.37 2.41
278 279 4.363999 GAGACATTCCCATCGACTACAAG 58.636 47.826 0.00 0.00 0.00 3.16
279 280 3.133003 AGACATTCCCATCGACTACAAGG 59.867 47.826 0.00 0.00 0.00 3.61
280 281 2.213499 CATTCCCATCGACTACAAGGC 58.787 52.381 0.00 0.00 0.00 4.35
286 287 4.396854 CGACTACAAGGCGCCTAC 57.603 61.111 33.07 15.42 41.27 3.18
287 288 1.585521 CGACTACAAGGCGCCTACG 60.586 63.158 33.07 26.08 41.27 3.51
288 289 1.226888 GACTACAAGGCGCCTACGG 60.227 63.158 33.07 24.15 40.57 4.02
289 290 1.941999 GACTACAAGGCGCCTACGGT 61.942 60.000 33.07 28.35 40.57 4.83
290 291 1.518572 CTACAAGGCGCCTACGGTG 60.519 63.158 33.07 26.40 40.57 4.94
291 292 1.940883 CTACAAGGCGCCTACGGTGA 61.941 60.000 33.07 12.81 40.57 4.02
292 293 2.216750 TACAAGGCGCCTACGGTGAC 62.217 60.000 33.07 0.00 42.50 3.67
295 296 2.508663 GGCGCCTACGGTGACTTC 60.509 66.667 22.15 0.00 38.38 3.01
296 297 2.879462 GCGCCTACGGTGACTTCG 60.879 66.667 0.00 0.00 40.57 3.79
297 298 2.564975 CGCCTACGGTGACTTCGT 59.435 61.111 0.00 0.00 43.64 3.85
298 299 1.796151 CGCCTACGGTGACTTCGTA 59.204 57.895 0.00 0.00 41.38 3.43
299 300 0.168788 CGCCTACGGTGACTTCGTAA 59.831 55.000 0.00 0.00 41.62 3.18
300 301 1.401409 CGCCTACGGTGACTTCGTAAA 60.401 52.381 0.00 0.00 41.62 2.01
301 302 2.676076 GCCTACGGTGACTTCGTAAAA 58.324 47.619 0.00 0.00 41.62 1.52
302 303 3.256558 GCCTACGGTGACTTCGTAAAAT 58.743 45.455 0.00 0.00 41.62 1.82
303 304 3.305361 GCCTACGGTGACTTCGTAAAATC 59.695 47.826 0.00 0.00 41.62 2.17
304 305 4.741342 CCTACGGTGACTTCGTAAAATCT 58.259 43.478 0.00 0.00 41.62 2.40
305 306 4.797349 CCTACGGTGACTTCGTAAAATCTC 59.203 45.833 0.00 0.00 41.62 2.75
306 307 4.247267 ACGGTGACTTCGTAAAATCTCA 57.753 40.909 0.00 0.00 39.22 3.27
307 308 4.624015 ACGGTGACTTCGTAAAATCTCAA 58.376 39.130 0.00 0.00 39.22 3.02
308 309 5.051816 ACGGTGACTTCGTAAAATCTCAAA 58.948 37.500 0.00 0.00 39.22 2.69
309 310 5.524646 ACGGTGACTTCGTAAAATCTCAAAA 59.475 36.000 0.00 0.00 39.22 2.44
310 311 6.204108 ACGGTGACTTCGTAAAATCTCAAAAT 59.796 34.615 0.00 0.00 39.22 1.82
311 312 6.519761 CGGTGACTTCGTAAAATCTCAAAATG 59.480 38.462 0.00 0.00 0.00 2.32
312 313 7.570507 CGGTGACTTCGTAAAATCTCAAAATGA 60.571 37.037 0.00 0.00 0.00 2.57
313 314 8.237267 GGTGACTTCGTAAAATCTCAAAATGAT 58.763 33.333 0.00 0.00 0.00 2.45
317 318 9.722056 ACTTCGTAAAATCTCAAAATGATATGC 57.278 29.630 0.00 0.00 0.00 3.14
318 319 9.173939 CTTCGTAAAATCTCAAAATGATATGCC 57.826 33.333 0.00 0.00 0.00 4.40
319 320 7.351981 TCGTAAAATCTCAAAATGATATGCCG 58.648 34.615 0.00 0.00 0.00 5.69
320 321 6.578545 CGTAAAATCTCAAAATGATATGCCGG 59.421 38.462 0.00 0.00 0.00 6.13
321 322 6.469782 AAAATCTCAAAATGATATGCCGGT 57.530 33.333 1.90 0.00 0.00 5.28
322 323 6.469782 AAATCTCAAAATGATATGCCGGTT 57.530 33.333 1.90 0.00 0.00 4.44
323 324 5.695851 ATCTCAAAATGATATGCCGGTTC 57.304 39.130 1.90 0.00 0.00 3.62
324 325 4.522114 TCTCAAAATGATATGCCGGTTCA 58.478 39.130 1.90 1.91 0.00 3.18
325 326 4.576053 TCTCAAAATGATATGCCGGTTCAG 59.424 41.667 1.90 0.00 0.00 3.02
326 327 4.269183 TCAAAATGATATGCCGGTTCAGT 58.731 39.130 1.90 0.00 0.00 3.41
327 328 4.335315 TCAAAATGATATGCCGGTTCAGTC 59.665 41.667 1.90 0.00 0.00 3.51
328 329 3.845781 AATGATATGCCGGTTCAGTCT 57.154 42.857 1.90 0.00 0.00 3.24
329 330 2.890808 TGATATGCCGGTTCAGTCTC 57.109 50.000 1.90 0.00 0.00 3.36
330 331 2.388735 TGATATGCCGGTTCAGTCTCT 58.611 47.619 1.90 0.00 0.00 3.10
331 332 2.362397 TGATATGCCGGTTCAGTCTCTC 59.638 50.000 1.90 0.00 0.00 3.20
332 333 0.738975 TATGCCGGTTCAGTCTCTCG 59.261 55.000 1.90 0.00 0.00 4.04
333 334 0.965866 ATGCCGGTTCAGTCTCTCGA 60.966 55.000 1.90 0.00 0.00 4.04
334 335 1.176619 TGCCGGTTCAGTCTCTCGAA 61.177 55.000 1.90 0.00 0.00 3.71
335 336 0.456995 GCCGGTTCAGTCTCTCGAAG 60.457 60.000 1.90 0.00 0.00 3.79
336 337 0.171455 CCGGTTCAGTCTCTCGAAGG 59.829 60.000 0.00 0.00 0.00 3.46
337 338 0.882474 CGGTTCAGTCTCTCGAAGGT 59.118 55.000 0.00 0.00 0.00 3.50
338 339 1.401670 CGGTTCAGTCTCTCGAAGGTG 60.402 57.143 0.00 0.00 0.00 4.00
339 340 1.670380 GGTTCAGTCTCTCGAAGGTGC 60.670 57.143 0.00 0.00 0.00 5.01
340 341 1.271102 GTTCAGTCTCTCGAAGGTGCT 59.729 52.381 0.00 0.00 0.00 4.40
341 342 1.169577 TCAGTCTCTCGAAGGTGCTC 58.830 55.000 0.00 0.00 0.00 4.26
342 343 0.884514 CAGTCTCTCGAAGGTGCTCA 59.115 55.000 0.00 0.00 0.00 4.26
343 344 1.476085 CAGTCTCTCGAAGGTGCTCAT 59.524 52.381 0.00 0.00 0.00 2.90
344 345 2.685388 CAGTCTCTCGAAGGTGCTCATA 59.315 50.000 0.00 0.00 0.00 2.15
345 346 3.129462 CAGTCTCTCGAAGGTGCTCATAA 59.871 47.826 0.00 0.00 0.00 1.90
346 347 3.380004 AGTCTCTCGAAGGTGCTCATAAG 59.620 47.826 0.00 0.00 0.00 1.73
347 348 2.690497 TCTCTCGAAGGTGCTCATAAGG 59.310 50.000 0.00 0.00 0.00 2.69
348 349 2.690497 CTCTCGAAGGTGCTCATAAGGA 59.310 50.000 0.00 0.00 0.00 3.36
349 350 3.300388 TCTCGAAGGTGCTCATAAGGAT 58.700 45.455 0.00 0.00 0.00 3.24
350 351 4.470602 TCTCGAAGGTGCTCATAAGGATA 58.529 43.478 0.00 0.00 0.00 2.59
351 352 4.520874 TCTCGAAGGTGCTCATAAGGATAG 59.479 45.833 0.00 0.00 0.00 2.08
352 353 3.574396 TCGAAGGTGCTCATAAGGATAGG 59.426 47.826 0.00 0.00 0.00 2.57
353 354 3.306364 CGAAGGTGCTCATAAGGATAGGG 60.306 52.174 0.00 0.00 0.00 3.53
354 355 3.352611 AGGTGCTCATAAGGATAGGGT 57.647 47.619 0.00 0.00 0.00 4.34
355 356 2.975489 AGGTGCTCATAAGGATAGGGTG 59.025 50.000 0.00 0.00 0.00 4.61
356 357 2.706190 GGTGCTCATAAGGATAGGGTGT 59.294 50.000 0.00 0.00 0.00 4.16
357 358 3.495100 GGTGCTCATAAGGATAGGGTGTG 60.495 52.174 0.00 0.00 0.00 3.82
358 359 2.104792 TGCTCATAAGGATAGGGTGTGC 59.895 50.000 0.00 0.00 0.00 4.57
359 360 2.868044 GCTCATAAGGATAGGGTGTGCG 60.868 54.545 0.00 0.00 0.00 5.34
360 361 2.365617 CTCATAAGGATAGGGTGTGCGT 59.634 50.000 0.00 0.00 0.00 5.24
361 362 2.102420 TCATAAGGATAGGGTGTGCGTG 59.898 50.000 0.00 0.00 0.00 5.34
362 363 1.563924 TAAGGATAGGGTGTGCGTGT 58.436 50.000 0.00 0.00 0.00 4.49
363 364 0.036388 AAGGATAGGGTGTGCGTGTG 60.036 55.000 0.00 0.00 0.00 3.82
364 365 1.192146 AGGATAGGGTGTGCGTGTGT 61.192 55.000 0.00 0.00 0.00 3.72
365 366 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
366 367 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
369 370 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
370 371 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
371 372 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
372 373 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
373 374 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
374 375 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
375 376 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
376 377 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
377 378 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
378 379 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
379 380 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
380 381 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
381 382 2.205074 GTGTGCGTTCATAGGGATGAG 58.795 52.381 0.00 0.00 43.03 2.90
382 383 1.831106 TGTGCGTTCATAGGGATGAGT 59.169 47.619 0.00 0.00 43.03 3.41
383 384 2.205074 GTGCGTTCATAGGGATGAGTG 58.795 52.381 0.00 0.00 43.03 3.51
384 385 1.831106 TGCGTTCATAGGGATGAGTGT 59.169 47.619 0.00 0.00 43.03 3.55
385 386 3.028130 TGCGTTCATAGGGATGAGTGTA 58.972 45.455 0.00 0.00 43.03 2.90
386 387 3.641436 TGCGTTCATAGGGATGAGTGTAT 59.359 43.478 0.00 0.00 43.03 2.29
387 388 3.990469 GCGTTCATAGGGATGAGTGTATG 59.010 47.826 0.00 0.00 43.03 2.39
388 389 3.990469 CGTTCATAGGGATGAGTGTATGC 59.010 47.826 0.00 0.00 43.03 3.14
389 390 3.942130 TCATAGGGATGAGTGTATGCG 57.058 47.619 0.00 0.00 37.15 4.73
390 391 2.029020 TCATAGGGATGAGTGTATGCGC 60.029 50.000 0.00 0.00 37.15 6.09
391 392 0.313987 TAGGGATGAGTGTATGCGCG 59.686 55.000 0.00 0.00 0.00 6.86
392 393 2.598632 GGGATGAGTGTATGCGCGC 61.599 63.158 27.26 27.26 0.00 6.86
393 394 2.541437 GATGAGTGTATGCGCGCG 59.459 61.111 28.44 28.44 0.00 6.86
394 395 2.202743 ATGAGTGTATGCGCGCGT 60.203 55.556 32.35 30.61 0.00 6.01
395 396 0.933047 GATGAGTGTATGCGCGCGTA 60.933 55.000 32.35 28.18 0.00 4.42
396 397 0.318699 ATGAGTGTATGCGCGCGTAT 60.319 50.000 34.26 34.26 0.00 3.06
397 398 0.308376 TGAGTGTATGCGCGCGTATA 59.692 50.000 32.06 32.06 0.00 1.47
398 399 1.068816 TGAGTGTATGCGCGCGTATAT 60.069 47.619 36.33 24.35 0.00 0.86
399 400 1.317611 GAGTGTATGCGCGCGTATATG 59.682 52.381 36.33 8.63 0.00 1.78
400 401 1.068816 AGTGTATGCGCGCGTATATGA 60.069 47.619 36.33 25.28 0.00 2.15
401 402 1.317611 GTGTATGCGCGCGTATATGAG 59.682 52.381 36.33 7.09 0.00 2.90
402 403 0.294887 GTATGCGCGCGTATATGAGC 59.705 55.000 36.33 22.92 0.00 4.26
412 413 3.833545 CGTATATGAGCGCTTAGGTCT 57.166 47.619 13.26 0.00 46.86 3.85
413 414 3.493272 CGTATATGAGCGCTTAGGTCTG 58.507 50.000 13.26 0.00 46.86 3.51
414 415 3.058155 CGTATATGAGCGCTTAGGTCTGT 60.058 47.826 13.26 0.00 46.86 3.41
415 416 4.153655 CGTATATGAGCGCTTAGGTCTGTA 59.846 45.833 13.26 0.00 46.86 2.74
416 417 2.873133 ATGAGCGCTTAGGTCTGTAC 57.127 50.000 13.26 0.00 46.86 2.90
417 418 0.815734 TGAGCGCTTAGGTCTGTACC 59.184 55.000 13.26 0.00 46.86 3.34
430 431 5.217895 GGTCTGTACCGATTGCTAAAAAG 57.782 43.478 0.00 0.00 35.62 2.27
431 432 4.933400 GGTCTGTACCGATTGCTAAAAAGA 59.067 41.667 0.00 0.00 35.62 2.52
432 433 5.410439 GGTCTGTACCGATTGCTAAAAAGAA 59.590 40.000 0.00 0.00 35.62 2.52
433 434 6.072893 GGTCTGTACCGATTGCTAAAAAGAAA 60.073 38.462 0.00 0.00 35.62 2.52
434 435 7.357303 GTCTGTACCGATTGCTAAAAAGAAAA 58.643 34.615 0.00 0.00 0.00 2.29
435 436 7.534239 GTCTGTACCGATTGCTAAAAAGAAAAG 59.466 37.037 0.00 0.00 0.00 2.27
436 437 7.442969 TCTGTACCGATTGCTAAAAAGAAAAGA 59.557 33.333 0.00 0.00 0.00 2.52
437 438 7.357303 TGTACCGATTGCTAAAAAGAAAAGAC 58.643 34.615 0.00 0.00 0.00 3.01
438 439 6.635030 ACCGATTGCTAAAAAGAAAAGACT 57.365 33.333 0.00 0.00 0.00 3.24
439 440 6.438763 ACCGATTGCTAAAAAGAAAAGACTG 58.561 36.000 0.00 0.00 0.00 3.51
440 441 5.858581 CCGATTGCTAAAAAGAAAAGACTGG 59.141 40.000 0.00 0.00 0.00 4.00
441 442 5.343325 CGATTGCTAAAAAGAAAAGACTGGC 59.657 40.000 0.00 0.00 0.00 4.85
442 443 5.590530 TTGCTAAAAAGAAAAGACTGGCA 57.409 34.783 0.00 0.00 0.00 4.92
443 444 5.590530 TGCTAAAAAGAAAAGACTGGCAA 57.409 34.783 0.00 0.00 0.00 4.52
444 445 5.348164 TGCTAAAAAGAAAAGACTGGCAAC 58.652 37.500 0.00 0.00 0.00 4.17
445 446 4.745125 GCTAAAAAGAAAAGACTGGCAACC 59.255 41.667 0.00 0.00 0.00 3.77
446 447 3.436700 AAAAGAAAAGACTGGCAACCG 57.563 42.857 0.00 0.00 0.00 4.44
447 448 0.668535 AAGAAAAGACTGGCAACCGC 59.331 50.000 0.00 0.00 37.44 5.68
448 449 0.465460 AGAAAAGACTGGCAACCGCA 60.465 50.000 0.00 0.00 41.24 5.69
449 450 0.383949 GAAAAGACTGGCAACCGCAA 59.616 50.000 0.00 0.00 41.24 4.85
450 451 0.102300 AAAAGACTGGCAACCGCAAC 59.898 50.000 0.00 0.00 41.24 4.17
451 452 1.734388 AAAGACTGGCAACCGCAACC 61.734 55.000 0.00 0.00 41.24 3.77
452 453 2.902423 AAGACTGGCAACCGCAACCA 62.902 55.000 0.00 0.00 41.24 3.67
453 454 2.441164 ACTGGCAACCGCAACCAA 60.441 55.556 0.00 0.00 41.24 3.67
454 455 2.010582 GACTGGCAACCGCAACCAAA 62.011 55.000 0.00 0.00 41.24 3.28
455 456 1.367102 CTGGCAACCGCAACCAAAT 59.633 52.632 0.00 0.00 41.24 2.32
456 457 0.945265 CTGGCAACCGCAACCAAATG 60.945 55.000 0.00 0.00 41.24 2.32
457 458 2.316867 GGCAACCGCAACCAAATGC 61.317 57.895 0.00 0.00 42.94 3.56
465 466 2.262572 GCAACCAAATGCGTCCTTAG 57.737 50.000 0.00 0.00 36.45 2.18
477 478 2.889852 CGTCCTTAGAGTTGCCCTAAC 58.110 52.381 0.00 0.00 39.65 2.34
480 481 4.254492 GTCCTTAGAGTTGCCCTAACAAG 58.746 47.826 0.00 0.00 41.88 3.16
538 539 1.282157 CCAACGATTTTCCCCTCCTCT 59.718 52.381 0.00 0.00 0.00 3.69
576 577 1.949631 CGCTCCGACCGCCTTTATC 60.950 63.158 0.00 0.00 0.00 1.75
606 607 2.522193 CCGGCTCTCCCCTCCTAC 60.522 72.222 0.00 0.00 0.00 3.18
607 608 2.279073 CGGCTCTCCCCTCCTACA 59.721 66.667 0.00 0.00 0.00 2.74
608 609 2.128507 CGGCTCTCCCCTCCTACAC 61.129 68.421 0.00 0.00 0.00 2.90
609 610 2.128507 GGCTCTCCCCTCCTACACG 61.129 68.421 0.00 0.00 0.00 4.49
610 611 2.128507 GCTCTCCCCTCCTACACGG 61.129 68.421 0.00 0.00 0.00 4.94
611 612 2.043248 TCTCCCCTCCTACACGGC 60.043 66.667 0.00 0.00 0.00 5.68
612 613 2.363795 CTCCCCTCCTACACGGCA 60.364 66.667 0.00 0.00 0.00 5.69
829 830 1.078426 CCCGCCCAACTCTACTTGG 60.078 63.158 0.00 0.00 40.57 3.61
905 906 4.724798 TGTGCAGGTAAAGGAGGGTAATAT 59.275 41.667 0.00 0.00 0.00 1.28
937 941 2.016961 CTTCGCAATGGATCACCGG 58.983 57.895 0.00 0.00 39.42 5.28
1106 1110 4.556233 CTCGACCATGTGAGTAACTCAAA 58.444 43.478 0.00 0.00 42.46 2.69
1158 1162 2.074576 GCCTCGTTGTTCCTTAACCTC 58.925 52.381 0.00 0.00 34.49 3.85
1160 1164 3.056322 GCCTCGTTGTTCCTTAACCTCTA 60.056 47.826 0.00 0.00 34.49 2.43
1163 1167 6.171213 CCTCGTTGTTCCTTAACCTCTATTT 58.829 40.000 0.00 0.00 34.49 1.40
1165 1169 7.174426 CCTCGTTGTTCCTTAACCTCTATTTTT 59.826 37.037 0.00 0.00 34.49 1.94
1221 1225 8.196771 ACTTGAGAACTGAGATGAGATGATTAC 58.803 37.037 0.00 0.00 0.00 1.89
1320 1324 1.373497 CTCATATCCTGCGACCGCC 60.373 63.158 12.08 0.00 41.09 6.13
1545 1549 7.065563 AGCAGAAGTAAAGCAAGTCTGATTATG 59.934 37.037 3.25 0.00 38.37 1.90
1568 1572 2.802787 TGTTTGGCAAATGGTTACCG 57.197 45.000 16.74 0.00 0.00 4.02
2077 2085 6.017026 TGTTCGTTTGTAATTTAGTGCCATGA 60.017 34.615 0.00 0.00 0.00 3.07
2083 2091 8.755018 GTTTGTAATTTAGTGCCATGATAATGC 58.245 33.333 0.00 0.00 0.00 3.56
2179 2187 8.037758 CAGTTTGTTCAGACATACTCCTAGAAT 58.962 37.037 0.00 0.00 43.35 2.40
2266 2274 6.213397 TGGTCCATGCTTATACTATATGCTGT 59.787 38.462 12.72 2.82 0.00 4.40
2284 2292 9.809096 ATATGCTGTTATAACTATCAAGATCCG 57.191 33.333 16.33 0.00 0.00 4.18
2420 2428 0.964358 AGCCTTGCTGTGAAGGATGC 60.964 55.000 4.77 0.00 44.87 3.91
2502 2510 4.588528 AGGTGAATTTGTGTGGCTATTGTT 59.411 37.500 0.00 0.00 0.00 2.83
2507 2515 5.657826 ATTTGTGTGGCTATTGTTATGCA 57.342 34.783 0.00 0.00 0.00 3.96
2728 2736 1.613437 AGGGCATGTGTTGTTGCTAAC 59.387 47.619 0.00 0.00 38.88 2.34
2837 2845 7.623630 TGAGGTATGTATGTGCATGCTAATAT 58.376 34.615 20.33 5.88 33.07 1.28
2931 2939 6.468000 GCATTTTTCCATGCTTAGTAACGTAC 59.532 38.462 0.00 0.00 45.35 3.67
2948 2956 8.961092 AGTAACGTACAATATAAAGCATACACG 58.039 33.333 0.00 0.00 0.00 4.49
2987 2995 8.068380 ACTCATACGTTTTCTCTAACAAAAAGC 58.932 33.333 0.00 0.00 0.00 3.51
3018 3026 6.560253 CACCTAGTAAATGTGCTTTCTTGT 57.440 37.500 0.00 0.00 0.00 3.16
3446 3459 5.335819 GCTTAACATTTGCCATGCCATTTTT 60.336 36.000 0.00 0.00 0.00 1.94
3517 3530 2.263895 TAGCTGGTTACTGGGATGGT 57.736 50.000 0.00 0.00 0.00 3.55
3615 3628 1.190323 GAGAACGAAACTGCACGTCTG 59.810 52.381 0.22 0.00 41.87 3.51
3663 3676 9.761504 GGTTTCTGTATATTCTTAACCTACTCC 57.238 37.037 0.00 0.00 32.75 3.85
3678 3691 0.618981 ACTCCCTCCGTCCCAAAATC 59.381 55.000 0.00 0.00 0.00 2.17
3684 3697 2.076863 CTCCGTCCCAAAATCAGTGTC 58.923 52.381 0.00 0.00 0.00 3.67
3685 3698 1.697432 TCCGTCCCAAAATCAGTGTCT 59.303 47.619 0.00 0.00 0.00 3.41
3686 3699 2.076863 CCGTCCCAAAATCAGTGTCTC 58.923 52.381 0.00 0.00 0.00 3.36
3687 3700 2.549992 CCGTCCCAAAATCAGTGTCTCA 60.550 50.000 0.00 0.00 0.00 3.27
3688 3701 3.138304 CGTCCCAAAATCAGTGTCTCAA 58.862 45.455 0.00 0.00 0.00 3.02
3689 3702 3.187227 CGTCCCAAAATCAGTGTCTCAAG 59.813 47.826 0.00 0.00 0.00 3.02
3690 3703 3.057946 GTCCCAAAATCAGTGTCTCAAGC 60.058 47.826 0.00 0.00 0.00 4.01
3691 3704 3.152341 CCCAAAATCAGTGTCTCAAGCT 58.848 45.455 0.00 0.00 0.00 3.74
3692 3705 3.571401 CCCAAAATCAGTGTCTCAAGCTT 59.429 43.478 0.00 0.00 0.00 3.74
3693 3706 4.761739 CCCAAAATCAGTGTCTCAAGCTTA 59.238 41.667 0.00 0.00 0.00 3.09
3694 3707 5.106396 CCCAAAATCAGTGTCTCAAGCTTAG 60.106 44.000 0.00 0.00 0.00 2.18
3695 3708 5.471456 CCAAAATCAGTGTCTCAAGCTTAGT 59.529 40.000 0.00 0.00 0.00 2.24
3697 3710 7.360438 CCAAAATCAGTGTCTCAAGCTTAGTAC 60.360 40.741 0.00 0.00 0.00 2.73
3698 3711 5.984695 ATCAGTGTCTCAAGCTTAGTACA 57.015 39.130 0.00 0.36 0.00 2.90
3699 3712 5.784578 TCAGTGTCTCAAGCTTAGTACAA 57.215 39.130 0.00 0.00 0.00 2.41
3700 3713 6.346477 TCAGTGTCTCAAGCTTAGTACAAT 57.654 37.500 0.00 0.00 0.00 2.71
3701 3714 6.759272 TCAGTGTCTCAAGCTTAGTACAATT 58.241 36.000 0.00 0.00 0.00 2.32
3703 3716 7.715249 TCAGTGTCTCAAGCTTAGTACAATTTT 59.285 33.333 0.00 0.00 0.00 1.82
3891 4022 1.270550 CGGCTTCAAATTTGGCAGAGT 59.729 47.619 17.90 0.00 0.00 3.24
3952 4083 6.994496 AGTTCCTTGTGGATCATATATGTGTG 59.006 38.462 12.42 0.00 42.81 3.82
3974 4105 5.415701 GTGCCTGTCTCCATTTTCTAATTGA 59.584 40.000 0.00 0.00 0.00 2.57
4314 4447 7.119116 TCTGTAAACGTTATGATGCACTTTGAT 59.881 33.333 0.00 0.00 0.00 2.57
4326 4459 6.479990 TGATGCACTTTGATCTAAATACCTCG 59.520 38.462 0.00 0.00 0.00 4.63
4351 4484 1.014352 ACCGATTTGAATAGCACGCC 58.986 50.000 0.00 0.00 0.00 5.68
4380 4513 2.027745 TCTGACTTCTGAGCAATGTCCC 60.028 50.000 0.00 0.00 0.00 4.46
4421 4554 6.707608 TGTACAATCATCCTCTATTGCATGAC 59.292 38.462 0.00 0.00 36.72 3.06
4463 4596 7.254319 CGGATTTTAAGAGCTACGCTATTTTGA 60.254 37.037 0.82 0.00 36.68 2.69
4541 4674 2.417097 GTTGTGGGCTGTGGTTGC 59.583 61.111 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.253100 AACGGCCAAATCGGTCATTT 58.747 45.000 2.24 0.00 40.64 2.32
3 4 0.250553 AGAAACGGCCAAATCGGTCA 60.251 50.000 2.24 0.00 40.64 4.02
4 5 1.729284 TAGAAACGGCCAAATCGGTC 58.271 50.000 2.24 0.00 36.97 4.79
5 6 2.188062 TTAGAAACGGCCAAATCGGT 57.812 45.000 2.24 0.00 36.97 4.69
6 7 2.223479 CCATTAGAAACGGCCAAATCGG 60.223 50.000 2.24 0.00 38.11 4.18
7 8 2.223479 CCCATTAGAAACGGCCAAATCG 60.223 50.000 2.24 0.00 0.00 3.34
9 10 1.480545 GCCCATTAGAAACGGCCAAAT 59.519 47.619 2.24 0.00 35.23 2.32
10 11 0.892063 GCCCATTAGAAACGGCCAAA 59.108 50.000 2.24 0.00 35.23 3.28
11 12 2.573920 GCCCATTAGAAACGGCCAA 58.426 52.632 2.24 0.00 35.23 4.52
12 13 4.329831 GCCCATTAGAAACGGCCA 57.670 55.556 2.24 0.00 35.23 5.36
14 15 1.306148 GTAGGCCCATTAGAAACGGC 58.694 55.000 0.00 0.00 40.85 5.68
15 16 1.489230 AGGTAGGCCCATTAGAAACGG 59.511 52.381 0.00 0.00 34.66 4.44
16 17 4.100498 TCTTAGGTAGGCCCATTAGAAACG 59.900 45.833 0.00 0.00 34.66 3.60
17 18 5.625568 TCTTAGGTAGGCCCATTAGAAAC 57.374 43.478 0.00 0.00 34.66 2.78
18 19 6.645884 TTTCTTAGGTAGGCCCATTAGAAA 57.354 37.500 0.00 5.23 35.53 2.52
19 20 6.159751 ACATTTCTTAGGTAGGCCCATTAGAA 59.840 38.462 0.00 0.00 34.66 2.10
20 21 5.670361 ACATTTCTTAGGTAGGCCCATTAGA 59.330 40.000 0.00 0.00 34.66 2.10
21 22 5.941788 ACATTTCTTAGGTAGGCCCATTAG 58.058 41.667 0.00 0.00 34.66 1.73
22 23 5.987019 ACATTTCTTAGGTAGGCCCATTA 57.013 39.130 0.00 0.00 34.66 1.90
23 24 4.881157 ACATTTCTTAGGTAGGCCCATT 57.119 40.909 0.00 0.00 34.66 3.16
24 25 4.881157 AACATTTCTTAGGTAGGCCCAT 57.119 40.909 0.00 0.00 34.66 4.00
25 26 4.668138 AAACATTTCTTAGGTAGGCCCA 57.332 40.909 0.00 0.00 34.66 5.36
26 27 6.888088 TCTTAAAACATTTCTTAGGTAGGCCC 59.112 38.462 0.00 0.00 34.57 5.80
27 28 7.933215 TCTTAAAACATTTCTTAGGTAGGCC 57.067 36.000 0.00 0.00 0.00 5.19
38 39 9.144085 CGCATAGTACGAATCTTAAAACATTTC 57.856 33.333 0.00 0.00 0.00 2.17
39 40 8.120465 CCGCATAGTACGAATCTTAAAACATTT 58.880 33.333 0.00 0.00 0.00 2.32
40 41 7.493320 TCCGCATAGTACGAATCTTAAAACATT 59.507 33.333 0.00 0.00 0.00 2.71
41 42 6.982141 TCCGCATAGTACGAATCTTAAAACAT 59.018 34.615 0.00 0.00 0.00 2.71
42 43 6.254157 GTCCGCATAGTACGAATCTTAAAACA 59.746 38.462 0.00 0.00 0.00 2.83
43 44 6.292008 GGTCCGCATAGTACGAATCTTAAAAC 60.292 42.308 0.00 0.00 0.00 2.43
44 45 5.750067 GGTCCGCATAGTACGAATCTTAAAA 59.250 40.000 0.00 0.00 0.00 1.52
45 46 5.163530 TGGTCCGCATAGTACGAATCTTAAA 60.164 40.000 0.00 0.00 0.00 1.52
46 47 4.338964 TGGTCCGCATAGTACGAATCTTAA 59.661 41.667 0.00 0.00 0.00 1.85
47 48 3.884693 TGGTCCGCATAGTACGAATCTTA 59.115 43.478 0.00 0.00 0.00 2.10
48 49 2.691526 TGGTCCGCATAGTACGAATCTT 59.308 45.455 0.00 0.00 0.00 2.40
49 50 2.304092 TGGTCCGCATAGTACGAATCT 58.696 47.619 0.00 0.00 0.00 2.40
50 51 2.787601 TGGTCCGCATAGTACGAATC 57.212 50.000 0.00 0.00 0.00 2.52
51 52 3.192466 GTTTGGTCCGCATAGTACGAAT 58.808 45.455 0.00 0.00 0.00 3.34
52 53 2.029200 TGTTTGGTCCGCATAGTACGAA 60.029 45.455 0.00 0.00 0.00 3.85
53 54 1.545136 TGTTTGGTCCGCATAGTACGA 59.455 47.619 0.00 0.00 0.00 3.43
54 55 1.924524 CTGTTTGGTCCGCATAGTACG 59.075 52.381 0.00 0.00 0.00 3.67
55 56 2.671396 CACTGTTTGGTCCGCATAGTAC 59.329 50.000 0.00 0.00 0.00 2.73
56 57 2.563620 TCACTGTTTGGTCCGCATAGTA 59.436 45.455 0.00 0.00 0.00 1.82
57 58 1.346395 TCACTGTTTGGTCCGCATAGT 59.654 47.619 0.00 0.00 0.00 2.12
58 59 2.093306 TCACTGTTTGGTCCGCATAG 57.907 50.000 0.00 0.00 0.00 2.23
59 60 2.147958 GTTCACTGTTTGGTCCGCATA 58.852 47.619 0.00 0.00 0.00 3.14
60 61 0.951558 GTTCACTGTTTGGTCCGCAT 59.048 50.000 0.00 0.00 0.00 4.73
61 62 1.433053 CGTTCACTGTTTGGTCCGCA 61.433 55.000 0.00 0.00 0.00 5.69
62 63 1.278637 CGTTCACTGTTTGGTCCGC 59.721 57.895 0.00 0.00 0.00 5.54
63 64 1.790623 CTACGTTCACTGTTTGGTCCG 59.209 52.381 0.00 0.00 0.00 4.79
64 65 3.057734 CTCTACGTTCACTGTTTGGTCC 58.942 50.000 0.00 0.00 0.00 4.46
65 66 2.475487 GCTCTACGTTCACTGTTTGGTC 59.525 50.000 0.00 0.00 0.00 4.02
66 67 2.480845 GCTCTACGTTCACTGTTTGGT 58.519 47.619 0.00 0.00 0.00 3.67
67 68 1.798813 GGCTCTACGTTCACTGTTTGG 59.201 52.381 0.00 0.00 0.00 3.28
68 69 1.798813 GGGCTCTACGTTCACTGTTTG 59.201 52.381 0.00 0.00 0.00 2.93
69 70 1.414919 TGGGCTCTACGTTCACTGTTT 59.585 47.619 0.00 0.00 0.00 2.83
70 71 1.045407 TGGGCTCTACGTTCACTGTT 58.955 50.000 0.00 0.00 0.00 3.16
71 72 1.267121 ATGGGCTCTACGTTCACTGT 58.733 50.000 0.00 0.00 0.00 3.55
72 73 2.386661 AATGGGCTCTACGTTCACTG 57.613 50.000 0.00 0.00 0.00 3.66
73 74 3.244422 TGAAAATGGGCTCTACGTTCACT 60.244 43.478 0.00 0.00 0.00 3.41
74 75 3.071479 TGAAAATGGGCTCTACGTTCAC 58.929 45.455 0.00 0.00 0.00 3.18
75 76 3.410631 TGAAAATGGGCTCTACGTTCA 57.589 42.857 0.00 0.00 0.00 3.18
76 77 4.201920 GGAATGAAAATGGGCTCTACGTTC 60.202 45.833 0.00 0.00 0.00 3.95
77 78 3.694566 GGAATGAAAATGGGCTCTACGTT 59.305 43.478 0.00 0.00 0.00 3.99
78 79 3.279434 GGAATGAAAATGGGCTCTACGT 58.721 45.455 0.00 0.00 0.00 3.57
79 80 3.065371 GTGGAATGAAAATGGGCTCTACG 59.935 47.826 0.00 0.00 0.00 3.51
80 81 3.065371 CGTGGAATGAAAATGGGCTCTAC 59.935 47.826 0.00 0.00 0.00 2.59
81 82 3.278574 CGTGGAATGAAAATGGGCTCTA 58.721 45.455 0.00 0.00 0.00 2.43
82 83 2.094675 CGTGGAATGAAAATGGGCTCT 58.905 47.619 0.00 0.00 0.00 4.09
83 84 1.469767 GCGTGGAATGAAAATGGGCTC 60.470 52.381 0.00 0.00 0.00 4.70
84 85 0.532115 GCGTGGAATGAAAATGGGCT 59.468 50.000 0.00 0.00 0.00 5.19
85 86 0.801836 CGCGTGGAATGAAAATGGGC 60.802 55.000 0.00 0.00 0.00 5.36
86 87 0.179140 CCGCGTGGAATGAAAATGGG 60.179 55.000 10.20 0.00 37.49 4.00
87 88 0.808125 TCCGCGTGGAATGAAAATGG 59.192 50.000 17.09 0.00 42.85 3.16
97 98 2.338620 CAGTCAAGTCCGCGTGGA 59.661 61.111 15.21 15.21 43.88 4.02
98 99 2.738521 CCAGTCAAGTCCGCGTGG 60.739 66.667 9.28 9.28 0.00 4.94
99 100 3.414700 GCCAGTCAAGTCCGCGTG 61.415 66.667 4.92 0.00 0.00 5.34
100 101 3.454587 TTGCCAGTCAAGTCCGCGT 62.455 57.895 4.92 0.00 0.00 6.01
101 102 2.664851 TTGCCAGTCAAGTCCGCG 60.665 61.111 0.00 0.00 0.00 6.46
102 103 2.617274 GGTTGCCAGTCAAGTCCGC 61.617 63.158 0.00 0.00 34.91 5.54
103 104 2.317609 CGGTTGCCAGTCAAGTCCG 61.318 63.158 0.00 0.00 37.77 4.79
104 105 2.617274 GCGGTTGCCAGTCAAGTCC 61.617 63.158 0.00 0.00 34.91 3.85
105 106 1.444119 TTGCGGTTGCCAGTCAAGTC 61.444 55.000 0.00 0.00 41.78 3.01
106 107 1.453015 TTGCGGTTGCCAGTCAAGT 60.453 52.632 0.00 0.00 41.78 3.16
107 108 1.008538 GTTGCGGTTGCCAGTCAAG 60.009 57.895 0.00 0.00 41.78 3.02
108 109 2.485795 GGTTGCGGTTGCCAGTCAA 61.486 57.895 0.00 0.00 41.78 3.18
109 110 2.904866 GGTTGCGGTTGCCAGTCA 60.905 61.111 0.00 0.00 41.78 3.41
110 111 4.025401 CGGTTGCGGTTGCCAGTC 62.025 66.667 0.00 0.00 41.78 3.51
121 122 2.344521 AAAGGTTGGTTCGCGGTTGC 62.345 55.000 6.13 0.00 37.91 4.17
122 123 0.593773 CAAAGGTTGGTTCGCGGTTG 60.594 55.000 6.13 0.00 0.00 3.77
123 124 1.730451 CCAAAGGTTGGTTCGCGGTT 61.730 55.000 6.13 0.00 45.93 4.44
124 125 2.190841 CCAAAGGTTGGTTCGCGGT 61.191 57.895 6.13 0.00 45.93 5.68
125 126 2.642700 CCAAAGGTTGGTTCGCGG 59.357 61.111 6.13 0.00 45.93 6.46
135 136 3.397955 ACCTAACCATCTCAACCAAAGGT 59.602 43.478 0.00 0.00 37.65 3.50
136 137 3.758554 CACCTAACCATCTCAACCAAAGG 59.241 47.826 0.00 0.00 0.00 3.11
137 138 3.758554 CCACCTAACCATCTCAACCAAAG 59.241 47.826 0.00 0.00 0.00 2.77
138 139 3.396276 TCCACCTAACCATCTCAACCAAA 59.604 43.478 0.00 0.00 0.00 3.28
139 140 2.983192 TCCACCTAACCATCTCAACCAA 59.017 45.455 0.00 0.00 0.00 3.67
140 141 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
141 142 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
142 143 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
143 144 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
144 145 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
145 146 2.832129 TCACTGTCCACCTAACCATCTC 59.168 50.000 0.00 0.00 0.00 2.75
146 147 2.902608 TCACTGTCCACCTAACCATCT 58.097 47.619 0.00 0.00 0.00 2.90
147 148 3.914426 ATCACTGTCCACCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
148 149 4.348168 GGATATCACTGTCCACCTAACCAT 59.652 45.833 4.83 0.00 33.05 3.55
149 150 3.709653 GGATATCACTGTCCACCTAACCA 59.290 47.826 4.83 0.00 33.05 3.67
150 151 3.967987 AGGATATCACTGTCCACCTAACC 59.032 47.826 4.83 0.00 35.19 2.85
151 152 5.615925 AAGGATATCACTGTCCACCTAAC 57.384 43.478 4.83 0.00 35.19 2.34
152 153 6.099269 GGTTAAGGATATCACTGTCCACCTAA 59.901 42.308 4.83 0.00 35.19 2.69
153 154 5.601313 GGTTAAGGATATCACTGTCCACCTA 59.399 44.000 4.83 0.00 35.19 3.08
154 155 4.409247 GGTTAAGGATATCACTGTCCACCT 59.591 45.833 4.83 0.00 35.19 4.00
155 156 4.444449 GGGTTAAGGATATCACTGTCCACC 60.444 50.000 4.83 1.21 35.19 4.61
156 157 4.163458 TGGGTTAAGGATATCACTGTCCAC 59.837 45.833 4.83 0.00 35.19 4.02
157 158 4.367166 TGGGTTAAGGATATCACTGTCCA 58.633 43.478 4.83 2.36 35.19 4.02
158 159 5.071788 TGATGGGTTAAGGATATCACTGTCC 59.928 44.000 4.83 1.47 32.98 4.02
159 160 6.174720 TGATGGGTTAAGGATATCACTGTC 57.825 41.667 4.83 0.00 0.00 3.51
160 161 5.072329 CCTGATGGGTTAAGGATATCACTGT 59.928 44.000 4.83 0.00 32.43 3.55
161 162 5.555017 CCTGATGGGTTAAGGATATCACTG 58.445 45.833 4.83 0.00 32.43 3.66
162 163 5.832539 CCTGATGGGTTAAGGATATCACT 57.167 43.478 4.83 0.00 32.43 3.41
182 183 0.779997 AGCACCAGGATTTGAACCCT 59.220 50.000 0.00 0.00 0.00 4.34
183 184 1.273327 CAAGCACCAGGATTTGAACCC 59.727 52.381 0.00 0.00 0.00 4.11
184 185 1.337167 GCAAGCACCAGGATTTGAACC 60.337 52.381 0.00 0.00 0.00 3.62
185 186 1.340889 TGCAAGCACCAGGATTTGAAC 59.659 47.619 0.00 0.00 0.00 3.18
186 187 1.702182 TGCAAGCACCAGGATTTGAA 58.298 45.000 0.00 0.00 0.00 2.69
187 188 1.927487 ATGCAAGCACCAGGATTTGA 58.073 45.000 0.00 0.00 0.00 2.69
188 189 2.754946 AATGCAAGCACCAGGATTTG 57.245 45.000 0.00 0.00 0.00 2.32
189 190 4.141869 GGATAAATGCAAGCACCAGGATTT 60.142 41.667 0.00 0.00 38.88 2.17
190 191 3.385755 GGATAAATGCAAGCACCAGGATT 59.614 43.478 0.00 0.00 0.00 3.01
191 192 2.961062 GGATAAATGCAAGCACCAGGAT 59.039 45.455 0.00 0.00 0.00 3.24
192 193 2.025037 AGGATAAATGCAAGCACCAGGA 60.025 45.455 0.00 0.00 0.00 3.86
193 194 2.100252 CAGGATAAATGCAAGCACCAGG 59.900 50.000 0.00 0.00 0.00 4.45
194 195 3.018856 TCAGGATAAATGCAAGCACCAG 58.981 45.455 0.00 0.00 0.00 4.00
195 196 3.084536 TCAGGATAAATGCAAGCACCA 57.915 42.857 0.00 0.00 0.00 4.17
196 197 4.660789 ATTCAGGATAAATGCAAGCACC 57.339 40.909 0.00 0.00 0.00 5.01
197 198 8.652810 AATAAATTCAGGATAAATGCAAGCAC 57.347 30.769 0.00 0.00 0.00 4.40
198 199 9.316730 GAAATAAATTCAGGATAAATGCAAGCA 57.683 29.630 0.00 0.00 37.99 3.91
199 200 9.316730 TGAAATAAATTCAGGATAAATGCAAGC 57.683 29.630 0.00 0.00 43.08 4.01
213 214 6.033341 CGCCGGAATTCTTGAAATAAATTCA 58.967 36.000 5.05 0.00 46.22 2.57
214 215 6.262601 TCGCCGGAATTCTTGAAATAAATTC 58.737 36.000 5.05 0.00 38.23 2.17
215 216 6.202516 TCGCCGGAATTCTTGAAATAAATT 57.797 33.333 5.05 0.00 0.00 1.82
216 217 5.828299 TCGCCGGAATTCTTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
217 218 5.828299 ATCGCCGGAATTCTTGAAATAAA 57.172 34.783 5.05 0.00 0.00 1.40
218 219 5.818336 TGTATCGCCGGAATTCTTGAAATAA 59.182 36.000 5.05 0.00 0.00 1.40
219 220 5.235616 GTGTATCGCCGGAATTCTTGAAATA 59.764 40.000 5.05 0.00 0.00 1.40
220 221 4.035208 GTGTATCGCCGGAATTCTTGAAAT 59.965 41.667 5.05 0.00 0.00 2.17
221 222 3.372822 GTGTATCGCCGGAATTCTTGAAA 59.627 43.478 5.05 0.00 0.00 2.69
222 223 2.933906 GTGTATCGCCGGAATTCTTGAA 59.066 45.455 5.05 0.00 0.00 2.69
223 224 2.167693 AGTGTATCGCCGGAATTCTTGA 59.832 45.455 5.05 0.00 0.00 3.02
224 225 2.550978 AGTGTATCGCCGGAATTCTTG 58.449 47.619 5.05 0.00 0.00 3.02
225 226 2.981859 AGTGTATCGCCGGAATTCTT 57.018 45.000 5.05 0.00 0.00 2.52
226 227 2.981859 AAGTGTATCGCCGGAATTCT 57.018 45.000 5.05 0.00 0.00 2.40
227 228 4.569564 ACTAAAAGTGTATCGCCGGAATTC 59.430 41.667 5.05 0.00 0.00 2.17
228 229 4.331717 CACTAAAAGTGTATCGCCGGAATT 59.668 41.667 5.05 0.00 41.19 2.17
229 230 3.869246 CACTAAAAGTGTATCGCCGGAAT 59.131 43.478 5.05 0.00 41.19 3.01
230 231 3.255725 CACTAAAAGTGTATCGCCGGAA 58.744 45.455 5.05 0.00 41.19 4.30
231 232 2.417651 CCACTAAAAGTGTATCGCCGGA 60.418 50.000 5.05 0.00 44.50 5.14
232 233 1.931172 CCACTAAAAGTGTATCGCCGG 59.069 52.381 0.00 0.00 44.50 6.13
233 234 1.931172 CCCACTAAAAGTGTATCGCCG 59.069 52.381 6.33 0.00 44.50 6.46
234 235 3.195661 CTCCCACTAAAAGTGTATCGCC 58.804 50.000 6.33 0.00 44.50 5.54
235 236 3.118884 TCCTCCCACTAAAAGTGTATCGC 60.119 47.826 6.33 0.00 44.50 4.58
236 237 4.401519 TCTCCTCCCACTAAAAGTGTATCG 59.598 45.833 6.33 0.00 44.50 2.92
237 238 5.187186 TGTCTCCTCCCACTAAAAGTGTATC 59.813 44.000 6.33 0.00 44.50 2.24
238 239 5.091552 TGTCTCCTCCCACTAAAAGTGTAT 58.908 41.667 6.33 0.00 44.50 2.29
239 240 4.485875 TGTCTCCTCCCACTAAAAGTGTA 58.514 43.478 6.33 0.00 44.50 2.90
240 241 3.314693 TGTCTCCTCCCACTAAAAGTGT 58.685 45.455 6.33 0.00 44.50 3.55
241 242 4.559862 ATGTCTCCTCCCACTAAAAGTG 57.440 45.455 0.00 0.00 45.53 3.16
242 243 4.019231 GGAATGTCTCCTCCCACTAAAAGT 60.019 45.833 0.00 0.00 41.61 2.66
243 244 4.518249 GGAATGTCTCCTCCCACTAAAAG 58.482 47.826 0.00 0.00 41.61 2.27
244 245 4.569719 GGAATGTCTCCTCCCACTAAAA 57.430 45.455 0.00 0.00 41.61 1.52
252 253 1.069358 GTCGATGGGAATGTCTCCTCC 59.931 57.143 0.00 0.00 44.68 4.30
253 254 2.035632 AGTCGATGGGAATGTCTCCTC 58.964 52.381 0.00 0.00 44.68 3.71
254 255 2.166907 AGTCGATGGGAATGTCTCCT 57.833 50.000 0.00 0.00 44.68 3.69
255 256 2.693591 TGTAGTCGATGGGAATGTCTCC 59.306 50.000 0.00 0.00 44.54 3.71
256 257 4.363999 CTTGTAGTCGATGGGAATGTCTC 58.636 47.826 0.00 0.00 0.00 3.36
257 258 3.133003 CCTTGTAGTCGATGGGAATGTCT 59.867 47.826 0.00 0.00 0.00 3.41
258 259 3.458189 CCTTGTAGTCGATGGGAATGTC 58.542 50.000 0.00 0.00 0.00 3.06
259 260 2.420129 GCCTTGTAGTCGATGGGAATGT 60.420 50.000 0.00 0.00 0.00 2.71
260 261 2.213499 GCCTTGTAGTCGATGGGAATG 58.787 52.381 0.00 0.00 0.00 2.67
261 262 1.202533 CGCCTTGTAGTCGATGGGAAT 60.203 52.381 0.00 0.00 0.00 3.01
262 263 0.174845 CGCCTTGTAGTCGATGGGAA 59.825 55.000 0.00 0.00 0.00 3.97
263 264 1.813859 CGCCTTGTAGTCGATGGGA 59.186 57.895 0.00 0.00 0.00 4.37
264 265 1.883084 GCGCCTTGTAGTCGATGGG 60.883 63.158 0.00 0.00 0.00 4.00
265 266 1.883084 GGCGCCTTGTAGTCGATGG 60.883 63.158 22.15 0.00 0.00 3.51
266 267 0.384309 TAGGCGCCTTGTAGTCGATG 59.616 55.000 37.74 0.00 0.00 3.84
267 268 0.384669 GTAGGCGCCTTGTAGTCGAT 59.615 55.000 37.74 8.78 0.00 3.59
268 269 1.805254 GTAGGCGCCTTGTAGTCGA 59.195 57.895 37.74 11.48 0.00 4.20
269 270 1.585521 CGTAGGCGCCTTGTAGTCG 60.586 63.158 37.74 23.36 0.00 4.18
270 271 1.226888 CCGTAGGCGCCTTGTAGTC 60.227 63.158 37.74 16.43 46.14 2.59
271 272 2.890371 CCGTAGGCGCCTTGTAGT 59.110 61.111 37.74 12.35 46.14 2.73
283 284 5.396484 TGAGATTTTACGAAGTCACCGTAG 58.604 41.667 0.00 0.00 43.93 3.51
284 285 5.375417 TGAGATTTTACGAAGTCACCGTA 57.625 39.130 0.00 0.00 43.93 4.02
285 286 4.247267 TGAGATTTTACGAAGTCACCGT 57.753 40.909 0.00 0.00 43.93 4.83
286 287 5.585500 TTTGAGATTTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
287 288 7.581476 TCATTTTGAGATTTTACGAAGTCACC 58.419 34.615 0.00 0.00 43.93 4.02
292 293 9.173939 GGCATATCATTTTGAGATTTTACGAAG 57.826 33.333 0.00 0.00 0.00 3.79
293 294 7.855409 CGGCATATCATTTTGAGATTTTACGAA 59.145 33.333 0.00 0.00 0.00 3.85
294 295 7.351981 CGGCATATCATTTTGAGATTTTACGA 58.648 34.615 0.00 0.00 0.00 3.43
295 296 6.578545 CCGGCATATCATTTTGAGATTTTACG 59.421 38.462 0.00 0.00 0.00 3.18
296 297 7.425606 ACCGGCATATCATTTTGAGATTTTAC 58.574 34.615 0.00 0.00 0.00 2.01
297 298 7.581213 ACCGGCATATCATTTTGAGATTTTA 57.419 32.000 0.00 0.00 0.00 1.52
298 299 6.469782 ACCGGCATATCATTTTGAGATTTT 57.530 33.333 0.00 0.00 0.00 1.82
299 300 6.096705 TGAACCGGCATATCATTTTGAGATTT 59.903 34.615 0.00 0.00 0.00 2.17
300 301 5.593909 TGAACCGGCATATCATTTTGAGATT 59.406 36.000 0.00 0.00 0.00 2.40
301 302 5.132502 TGAACCGGCATATCATTTTGAGAT 58.867 37.500 0.00 0.00 0.00 2.75
302 303 4.522114 TGAACCGGCATATCATTTTGAGA 58.478 39.130 0.00 0.00 0.00 3.27
303 304 4.336433 ACTGAACCGGCATATCATTTTGAG 59.664 41.667 0.00 0.00 0.00 3.02
304 305 4.269183 ACTGAACCGGCATATCATTTTGA 58.731 39.130 0.00 0.00 0.00 2.69
305 306 4.336433 AGACTGAACCGGCATATCATTTTG 59.664 41.667 0.00 0.00 0.00 2.44
306 307 4.526970 AGACTGAACCGGCATATCATTTT 58.473 39.130 0.00 0.00 0.00 1.82
307 308 4.130118 GAGACTGAACCGGCATATCATTT 58.870 43.478 0.00 0.00 0.00 2.32
308 309 3.389329 AGAGACTGAACCGGCATATCATT 59.611 43.478 0.00 0.00 0.00 2.57
309 310 2.968574 AGAGACTGAACCGGCATATCAT 59.031 45.455 0.00 0.00 0.00 2.45
310 311 2.362397 GAGAGACTGAACCGGCATATCA 59.638 50.000 0.00 0.00 0.00 2.15
311 312 2.605823 CGAGAGACTGAACCGGCATATC 60.606 54.545 0.00 0.00 0.00 1.63
312 313 1.338337 CGAGAGACTGAACCGGCATAT 59.662 52.381 0.00 0.00 0.00 1.78
313 314 0.738975 CGAGAGACTGAACCGGCATA 59.261 55.000 0.00 0.00 0.00 3.14
314 315 0.965866 TCGAGAGACTGAACCGGCAT 60.966 55.000 0.00 0.00 33.31 4.40
315 316 1.176619 TTCGAGAGACTGAACCGGCA 61.177 55.000 0.00 0.00 41.84 5.69
316 317 0.456995 CTTCGAGAGACTGAACCGGC 60.457 60.000 0.00 0.00 41.84 6.13
317 318 0.171455 CCTTCGAGAGACTGAACCGG 59.829 60.000 0.00 0.00 41.84 5.28
318 319 0.882474 ACCTTCGAGAGACTGAACCG 59.118 55.000 0.00 0.00 41.84 4.44
319 320 1.670380 GCACCTTCGAGAGACTGAACC 60.670 57.143 0.00 0.00 41.84 3.62
320 321 1.271102 AGCACCTTCGAGAGACTGAAC 59.729 52.381 0.00 0.00 41.84 3.18
321 322 1.542030 GAGCACCTTCGAGAGACTGAA 59.458 52.381 0.00 0.00 41.84 3.02
322 323 1.169577 GAGCACCTTCGAGAGACTGA 58.830 55.000 0.00 0.00 41.84 3.41
323 324 0.884514 TGAGCACCTTCGAGAGACTG 59.115 55.000 0.00 0.00 41.84 3.51
324 325 1.846007 ATGAGCACCTTCGAGAGACT 58.154 50.000 0.00 0.00 41.84 3.24
325 326 3.490078 CCTTATGAGCACCTTCGAGAGAC 60.490 52.174 0.00 0.00 41.84 3.36
326 327 2.690497 CCTTATGAGCACCTTCGAGAGA 59.310 50.000 0.00 0.00 39.20 3.10
327 328 2.690497 TCCTTATGAGCACCTTCGAGAG 59.310 50.000 0.00 0.00 0.00 3.20
328 329 2.735151 TCCTTATGAGCACCTTCGAGA 58.265 47.619 0.00 0.00 0.00 4.04
329 330 3.742433 ATCCTTATGAGCACCTTCGAG 57.258 47.619 0.00 0.00 0.00 4.04
330 331 3.574396 CCTATCCTTATGAGCACCTTCGA 59.426 47.826 0.00 0.00 0.00 3.71
331 332 3.306364 CCCTATCCTTATGAGCACCTTCG 60.306 52.174 0.00 0.00 0.00 3.79
332 333 3.648545 ACCCTATCCTTATGAGCACCTTC 59.351 47.826 0.00 0.00 0.00 3.46
333 334 3.392616 CACCCTATCCTTATGAGCACCTT 59.607 47.826 0.00 0.00 0.00 3.50
334 335 2.975489 CACCCTATCCTTATGAGCACCT 59.025 50.000 0.00 0.00 0.00 4.00
335 336 2.706190 ACACCCTATCCTTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
336 337 3.733337 CACACCCTATCCTTATGAGCAC 58.267 50.000 0.00 0.00 0.00 4.40
337 338 2.104792 GCACACCCTATCCTTATGAGCA 59.895 50.000 0.00 0.00 0.00 4.26
338 339 2.772287 GCACACCCTATCCTTATGAGC 58.228 52.381 0.00 0.00 0.00 4.26
339 340 2.365617 ACGCACACCCTATCCTTATGAG 59.634 50.000 0.00 0.00 0.00 2.90
340 341 2.102420 CACGCACACCCTATCCTTATGA 59.898 50.000 0.00 0.00 0.00 2.15
341 342 2.158957 ACACGCACACCCTATCCTTATG 60.159 50.000 0.00 0.00 0.00 1.90
342 343 2.116238 ACACGCACACCCTATCCTTAT 58.884 47.619 0.00 0.00 0.00 1.73
343 344 1.206132 CACACGCACACCCTATCCTTA 59.794 52.381 0.00 0.00 0.00 2.69
344 345 0.036388 CACACGCACACCCTATCCTT 60.036 55.000 0.00 0.00 0.00 3.36
345 346 1.192146 ACACACGCACACCCTATCCT 61.192 55.000 0.00 0.00 0.00 3.24
346 347 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
347 348 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
348 349 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
349 350 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
352 353 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
353 354 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
354 355 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
355 356 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
356 357 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
357 358 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
358 359 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
359 360 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
360 361 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
361 362 2.205074 CTCATCCCTATGAACGCACAC 58.795 52.381 0.00 0.00 41.57 3.82
362 363 1.831106 ACTCATCCCTATGAACGCACA 59.169 47.619 0.00 0.00 41.57 4.57
363 364 2.205074 CACTCATCCCTATGAACGCAC 58.795 52.381 0.00 0.00 41.57 5.34
364 365 1.831106 ACACTCATCCCTATGAACGCA 59.169 47.619 0.00 0.00 41.57 5.24
365 366 2.604046 ACACTCATCCCTATGAACGC 57.396 50.000 0.00 0.00 41.57 4.84
366 367 3.990469 GCATACACTCATCCCTATGAACG 59.010 47.826 0.00 0.00 41.57 3.95
367 368 3.990469 CGCATACACTCATCCCTATGAAC 59.010 47.826 0.00 0.00 41.57 3.18
368 369 3.554960 GCGCATACACTCATCCCTATGAA 60.555 47.826 0.30 0.00 41.57 2.57
369 370 2.029020 GCGCATACACTCATCCCTATGA 60.029 50.000 0.30 0.00 39.87 2.15
370 371 2.341257 GCGCATACACTCATCCCTATG 58.659 52.381 0.30 0.00 0.00 2.23
371 372 1.067565 CGCGCATACACTCATCCCTAT 60.068 52.381 8.75 0.00 0.00 2.57
372 373 0.313987 CGCGCATACACTCATCCCTA 59.686 55.000 8.75 0.00 0.00 3.53
373 374 1.068083 CGCGCATACACTCATCCCT 59.932 57.895 8.75 0.00 0.00 4.20
374 375 2.598632 GCGCGCATACACTCATCCC 61.599 63.158 29.10 0.00 0.00 3.85
375 376 2.931386 GCGCGCATACACTCATCC 59.069 61.111 29.10 0.00 0.00 3.51
376 377 0.933047 TACGCGCGCATACACTCATC 60.933 55.000 32.58 0.00 0.00 2.92
377 378 0.318699 ATACGCGCGCATACACTCAT 60.319 50.000 32.58 8.80 0.00 2.90
378 379 0.308376 TATACGCGCGCATACACTCA 59.692 50.000 32.58 2.69 0.00 3.41
379 380 1.317611 CATATACGCGCGCATACACTC 59.682 52.381 32.58 0.00 0.00 3.51
380 381 1.068816 TCATATACGCGCGCATACACT 60.069 47.619 32.58 11.38 0.00 3.55
381 382 1.317611 CTCATATACGCGCGCATACAC 59.682 52.381 32.58 0.00 0.00 2.90
382 383 1.613270 CTCATATACGCGCGCATACA 58.387 50.000 32.58 10.65 0.00 2.29
383 384 0.294887 GCTCATATACGCGCGCATAC 59.705 55.000 32.58 11.16 0.00 2.39
384 385 1.131618 CGCTCATATACGCGCGCATA 61.132 55.000 32.58 27.72 43.01 3.14
385 386 2.436539 CGCTCATATACGCGCGCAT 61.437 57.895 32.58 26.28 43.01 4.73
386 387 3.097114 CGCTCATATACGCGCGCA 61.097 61.111 32.58 20.08 43.01 6.09
392 393 3.058155 ACAGACCTAAGCGCTCATATACG 60.058 47.826 12.06 0.00 0.00 3.06
393 394 4.506886 ACAGACCTAAGCGCTCATATAC 57.493 45.455 12.06 1.00 0.00 1.47
394 395 4.458295 GGTACAGACCTAAGCGCTCATATA 59.542 45.833 12.06 0.00 43.16 0.86
395 396 3.256136 GGTACAGACCTAAGCGCTCATAT 59.744 47.826 12.06 0.00 43.16 1.78
396 397 2.621998 GGTACAGACCTAAGCGCTCATA 59.378 50.000 12.06 0.00 43.16 2.15
397 398 1.409427 GGTACAGACCTAAGCGCTCAT 59.591 52.381 12.06 0.00 43.16 2.90
398 399 0.815734 GGTACAGACCTAAGCGCTCA 59.184 55.000 12.06 0.00 43.16 4.26
399 400 0.248539 CGGTACAGACCTAAGCGCTC 60.249 60.000 12.06 0.00 44.46 5.03
400 401 0.679002 TCGGTACAGACCTAAGCGCT 60.679 55.000 2.64 2.64 44.46 5.92
401 402 0.384669 ATCGGTACAGACCTAAGCGC 59.615 55.000 0.00 0.00 44.46 5.92
402 403 2.460918 CAATCGGTACAGACCTAAGCG 58.539 52.381 0.00 0.00 44.46 4.68
403 404 2.159085 AGCAATCGGTACAGACCTAAGC 60.159 50.000 0.00 0.00 44.46 3.09
404 405 3.802948 AGCAATCGGTACAGACCTAAG 57.197 47.619 0.00 0.00 44.46 2.18
405 406 5.664294 TTTAGCAATCGGTACAGACCTAA 57.336 39.130 0.00 3.65 44.46 2.69
406 407 5.664294 TTTTAGCAATCGGTACAGACCTA 57.336 39.130 0.00 0.00 44.46 3.08
407 408 4.546829 TTTTAGCAATCGGTACAGACCT 57.453 40.909 0.00 0.00 44.46 3.85
408 409 4.933400 TCTTTTTAGCAATCGGTACAGACC 59.067 41.667 0.00 0.00 43.03 3.85
409 410 6.476243 TTCTTTTTAGCAATCGGTACAGAC 57.524 37.500 0.00 0.00 0.00 3.51
410 411 7.442969 TCTTTTCTTTTTAGCAATCGGTACAGA 59.557 33.333 0.00 0.00 0.00 3.41
411 412 7.534239 GTCTTTTCTTTTTAGCAATCGGTACAG 59.466 37.037 0.00 0.00 0.00 2.74
412 413 7.227910 AGTCTTTTCTTTTTAGCAATCGGTACA 59.772 33.333 0.00 0.00 0.00 2.90
413 414 7.534239 CAGTCTTTTCTTTTTAGCAATCGGTAC 59.466 37.037 0.00 0.00 0.00 3.34
414 415 7.308348 CCAGTCTTTTCTTTTTAGCAATCGGTA 60.308 37.037 0.00 0.00 0.00 4.02
415 416 6.438763 CAGTCTTTTCTTTTTAGCAATCGGT 58.561 36.000 0.00 0.00 0.00 4.69
416 417 5.858581 CCAGTCTTTTCTTTTTAGCAATCGG 59.141 40.000 0.00 0.00 0.00 4.18
417 418 5.343325 GCCAGTCTTTTCTTTTTAGCAATCG 59.657 40.000 0.00 0.00 0.00 3.34
418 419 6.215845 TGCCAGTCTTTTCTTTTTAGCAATC 58.784 36.000 0.00 0.00 0.00 2.67
419 420 6.160576 TGCCAGTCTTTTCTTTTTAGCAAT 57.839 33.333 0.00 0.00 0.00 3.56
420 421 5.590530 TGCCAGTCTTTTCTTTTTAGCAA 57.409 34.783 0.00 0.00 0.00 3.91
421 422 5.348164 GTTGCCAGTCTTTTCTTTTTAGCA 58.652 37.500 0.00 0.00 0.00 3.49
422 423 4.745125 GGTTGCCAGTCTTTTCTTTTTAGC 59.255 41.667 0.00 0.00 0.00 3.09
423 424 4.976116 CGGTTGCCAGTCTTTTCTTTTTAG 59.024 41.667 0.00 0.00 0.00 1.85
424 425 4.735283 GCGGTTGCCAGTCTTTTCTTTTTA 60.735 41.667 0.00 0.00 33.98 1.52
425 426 3.780902 CGGTTGCCAGTCTTTTCTTTTT 58.219 40.909 0.00 0.00 0.00 1.94
426 427 2.481276 GCGGTTGCCAGTCTTTTCTTTT 60.481 45.455 0.00 0.00 33.98 2.27
427 428 1.067060 GCGGTTGCCAGTCTTTTCTTT 59.933 47.619 0.00 0.00 33.98 2.52
428 429 0.668535 GCGGTTGCCAGTCTTTTCTT 59.331 50.000 0.00 0.00 33.98 2.52
429 430 0.465460 TGCGGTTGCCAGTCTTTTCT 60.465 50.000 0.00 0.00 41.78 2.52
430 431 0.383949 TTGCGGTTGCCAGTCTTTTC 59.616 50.000 0.00 0.00 41.78 2.29
431 432 0.102300 GTTGCGGTTGCCAGTCTTTT 59.898 50.000 0.00 0.00 41.78 2.27
432 433 1.733526 GTTGCGGTTGCCAGTCTTT 59.266 52.632 0.00 0.00 41.78 2.52
433 434 2.193536 GGTTGCGGTTGCCAGTCTT 61.194 57.895 0.00 0.00 41.78 3.01
434 435 2.594592 GGTTGCGGTTGCCAGTCT 60.595 61.111 0.00 0.00 41.78 3.24
435 436 2.010582 TTTGGTTGCGGTTGCCAGTC 62.011 55.000 0.00 0.00 41.78 3.51
436 437 1.398958 ATTTGGTTGCGGTTGCCAGT 61.399 50.000 0.00 0.00 41.78 4.00
437 438 0.945265 CATTTGGTTGCGGTTGCCAG 60.945 55.000 0.00 0.00 41.78 4.85
438 439 1.068753 CATTTGGTTGCGGTTGCCA 59.931 52.632 0.00 0.00 41.78 4.92
439 440 2.316867 GCATTTGGTTGCGGTTGCC 61.317 57.895 0.00 0.00 41.78 4.52
440 441 3.243128 GCATTTGGTTGCGGTTGC 58.757 55.556 0.00 0.00 43.20 4.17
446 447 1.810151 TCTAAGGACGCATTTGGTTGC 59.190 47.619 0.00 0.00 39.29 4.17
447 448 3.074412 ACTCTAAGGACGCATTTGGTTG 58.926 45.455 0.00 0.00 0.00 3.77
448 449 3.418684 ACTCTAAGGACGCATTTGGTT 57.581 42.857 0.00 0.00 0.00 3.67
449 450 3.074412 CAACTCTAAGGACGCATTTGGT 58.926 45.455 0.00 0.00 0.00 3.67
450 451 2.159517 GCAACTCTAAGGACGCATTTGG 60.160 50.000 0.00 0.00 0.00 3.28
451 452 2.159517 GGCAACTCTAAGGACGCATTTG 60.160 50.000 0.00 0.00 0.00 2.32
452 453 2.084546 GGCAACTCTAAGGACGCATTT 58.915 47.619 0.00 0.00 0.00 2.32
453 454 1.679032 GGGCAACTCTAAGGACGCATT 60.679 52.381 0.00 0.00 0.00 3.56
454 455 0.107654 GGGCAACTCTAAGGACGCAT 60.108 55.000 0.00 0.00 0.00 4.73
455 456 1.192146 AGGGCAACTCTAAGGACGCA 61.192 55.000 0.00 0.00 0.00 5.24
456 457 0.822164 TAGGGCAACTCTAAGGACGC 59.178 55.000 0.00 0.00 0.00 5.19
457 458 2.232941 TGTTAGGGCAACTCTAAGGACG 59.767 50.000 0.00 0.00 38.05 4.79
458 459 3.975168 TGTTAGGGCAACTCTAAGGAC 57.025 47.619 0.00 0.00 38.05 3.85
459 460 3.263425 CCTTGTTAGGGCAACTCTAAGGA 59.737 47.826 0.00 0.00 38.92 3.36
460 461 3.263425 TCCTTGTTAGGGCAACTCTAAGG 59.737 47.826 0.00 0.00 42.26 2.69
461 462 4.553330 TCCTTGTTAGGGCAACTCTAAG 57.447 45.455 0.00 0.00 42.26 2.18
462 463 4.986054 TTCCTTGTTAGGGCAACTCTAA 57.014 40.909 0.00 0.00 42.26 2.10
463 464 4.506095 GGTTTCCTTGTTAGGGCAACTCTA 60.506 45.833 0.00 0.00 42.26 2.43
464 465 3.487372 GTTTCCTTGTTAGGGCAACTCT 58.513 45.455 0.00 0.00 42.26 3.24
465 466 2.557056 GGTTTCCTTGTTAGGGCAACTC 59.443 50.000 0.00 0.00 42.26 3.01
477 478 3.431725 GAGCCCGCGGTTTCCTTG 61.432 66.667 26.12 7.77 0.00 3.61
520 521 2.027100 GTGAGAGGAGGGGAAAATCGTT 60.027 50.000 0.00 0.00 0.00 3.85
610 611 1.134694 GAAAGGAATCGGCGTGTGC 59.865 57.895 6.85 0.86 41.71 4.57
611 612 0.953471 TGGAAAGGAATCGGCGTGTG 60.953 55.000 6.85 0.00 0.00 3.82
612 613 0.953960 GTGGAAAGGAATCGGCGTGT 60.954 55.000 6.85 0.00 0.00 4.49
736 737 2.888414 GAGGAATAGGAGAGGAAGTCGG 59.112 54.545 0.00 0.00 0.00 4.79
821 822 2.422479 CGTCGATGAGAACCCAAGTAGA 59.578 50.000 0.00 0.00 0.00 2.59
829 830 0.389948 AGGCAACGTCGATGAGAACC 60.390 55.000 12.58 7.10 46.39 3.62
873 874 1.617322 TTACCTGCACACGAGAGACT 58.383 50.000 0.00 0.00 0.00 3.24
874 875 2.329379 CTTTACCTGCACACGAGAGAC 58.671 52.381 0.00 0.00 0.00 3.36
990 994 4.554036 GGCGGCATCTCCTCCCAC 62.554 72.222 3.07 0.00 33.45 4.61
1221 1225 2.894565 CGGCGGCTAGGAGTACGAG 61.895 68.421 7.61 0.00 0.00 4.18
1257 1261 1.678101 GCTTCATCCATAACAGGGCAC 59.322 52.381 0.00 0.00 0.00 5.01
1363 1367 9.471084 AATACTTGCAATGTTAAGTTGTTAACC 57.529 29.630 0.00 0.00 45.19 2.85
1415 1419 2.357009 AGCAGTTTTCAGCACAAGTCTG 59.643 45.455 0.00 0.00 34.70 3.51
1422 1426 3.399330 TGGTAGTAGCAGTTTTCAGCAC 58.601 45.455 0.00 0.00 34.70 4.40
2077 2085 5.479306 AGCGAATATCAGTTACGGCATTAT 58.521 37.500 0.00 0.00 0.00 1.28
2083 2091 5.744345 GGATATGAGCGAATATCAGTTACGG 59.256 44.000 17.93 0.00 40.07 4.02
2179 2187 4.521639 GCCAATGGAGCATATTGAATGAGA 59.478 41.667 2.05 0.00 37.65 3.27
2266 2274 9.909644 GTAAGCTTCGGATCTTGATAGTTATAA 57.090 33.333 0.00 0.00 0.00 0.98
2507 2515 9.661563 CTCAATGGGCAATTGCATATAAATAAT 57.338 29.630 30.32 8.14 44.63 1.28
2743 2751 1.909302 TCTCCCTCTTGACCACCAATC 59.091 52.381 0.00 0.00 33.68 2.67
2931 2939 7.259290 ACTTTCCCGTGTATGCTTTATATTG 57.741 36.000 0.00 0.00 0.00 1.90
2948 2956 6.980051 AACGTATGAGTATTCAACTTTCCC 57.020 37.500 0.00 0.00 39.07 3.97
2986 2994 1.153353 TTTACTAGGTGCAGCAACGC 58.847 50.000 19.63 0.00 0.00 4.84
2987 2995 2.742053 ACATTTACTAGGTGCAGCAACG 59.258 45.455 19.63 8.06 0.00 4.10
3018 3026 7.362574 GCACAACAATAGGTTAAAGCCTGAATA 60.363 37.037 0.00 0.00 37.72 1.75
3446 3459 3.256383 CCAATGACTGACCATTTCTGCAA 59.744 43.478 0.00 0.00 34.77 4.08
3517 3530 3.873801 GCCCAGAAGTGAAATAGAGCCAA 60.874 47.826 0.00 0.00 0.00 4.52
3567 3580 7.444487 ACATAGAACCAACAACTTTCTTAGGAC 59.556 37.037 0.00 0.00 31.93 3.85
3615 3628 2.955660 TCTGGTTCAAACATTGGACACC 59.044 45.455 4.07 2.95 41.10 4.16
3659 3672 0.618981 GATTTTGGGACGGAGGGAGT 59.381 55.000 0.00 0.00 0.00 3.85
3663 3676 1.271379 ACACTGATTTTGGGACGGAGG 60.271 52.381 0.00 0.00 0.00 4.30
3678 3691 7.426929 AAATTGTACTAAGCTTGAGACACTG 57.573 36.000 9.86 0.00 0.00 3.66
3735 3838 1.497161 ATACTCCCTCCGTCCCAAAG 58.503 55.000 0.00 0.00 0.00 2.77
3891 4022 5.123820 CAGCACTGCTTACAAGGCTAAAATA 59.876 40.000 0.00 0.00 36.40 1.40
3974 4105 0.179045 GACTGCTGGGAACGCCATAT 60.179 55.000 0.00 0.00 35.15 1.78
4326 4459 3.309954 GTGCTATTCAAATCGGTGACCTC 59.690 47.826 0.00 0.00 0.00 3.85
4330 4463 1.663643 GCGTGCTATTCAAATCGGTGA 59.336 47.619 0.00 0.00 0.00 4.02
4351 4484 2.857152 GCTCAGAAGTCAGAACGCTATG 59.143 50.000 0.00 0.00 0.00 2.23
4380 4513 9.935682 ATGATTGTACACTAATTTCATTTAGCG 57.064 29.630 0.00 0.00 33.34 4.26
4484 4617 3.421919 TGGATGTGTCTTGAGCAATGA 57.578 42.857 0.00 0.00 0.00 2.57
4541 4674 6.236017 TCTCAATTGTTAAAGGCAAGTACG 57.764 37.500 5.13 0.00 0.00 3.67
4630 4772 6.607689 TGTAATAATTGTCTCAAGGCAAACG 58.392 36.000 0.54 0.00 0.00 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.