Multiple sequence alignment - TraesCS7A01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G312000 chr7A 100.000 5015 0 0 1 5015 442956094 442951080 0.000000e+00 9262.0
1 TraesCS7A01G312000 chr7A 90.909 44 4 0 73 116 118239068 118239025 5.420000e-05 60.2
2 TraesCS7A01G312000 chr7B 93.242 4143 156 40 902 5015 387648696 387644649 0.000000e+00 5986.0
3 TraesCS7A01G312000 chr7B 89.516 248 10 8 641 877 387648931 387648689 2.930000e-77 300.0
4 TraesCS7A01G312000 chr7B 84.321 287 40 5 3 289 139428098 139427817 4.950000e-70 276.0
5 TraesCS7A01G312000 chr7D 94.474 3728 103 27 928 4626 390911179 390907526 0.000000e+00 5648.0
6 TraesCS7A01G312000 chr7D 94.985 339 14 1 4680 5015 390907518 390907180 3.440000e-146 529.0
7 TraesCS7A01G312000 chr7D 86.486 259 8 7 634 877 390911437 390911191 4.980000e-65 259.0
8 TraesCS7A01G312000 chr3D 85.938 192 19 4 314 497 481230067 481229876 1.100000e-46 198.0
9 TraesCS7A01G312000 chr2A 83.234 167 23 4 314 476 71307189 71307354 1.120000e-31 148.0
10 TraesCS7A01G312000 chr2A 81.928 166 25 4 314 476 71205071 71205234 8.760000e-28 135.0
11 TraesCS7A01G312000 chr2A 81.928 166 25 4 314 476 71257701 71257864 8.760000e-28 135.0
12 TraesCS7A01G312000 chr2B 80.303 198 31 5 314 503 650166549 650166352 5.230000e-30 143.0
13 TraesCS7A01G312000 chr2B 91.489 47 4 0 70 116 744110470 744110516 1.170000e-06 65.8
14 TraesCS7A01G312000 chr3A 81.928 166 26 3 315 476 441494548 441494713 2.430000e-28 137.0
15 TraesCS7A01G312000 chr2D 80.282 142 24 4 1 139 606570729 606570869 2.470000e-18 104.0
16 TraesCS7A01G312000 chr2D 92.157 51 4 0 65 115 131273474 131273524 6.960000e-09 73.1
17 TraesCS7A01G312000 chr2D 91.489 47 4 0 70 116 110638727 110638773 1.170000e-06 65.8
18 TraesCS7A01G312000 chr2D 93.182 44 3 0 73 116 585765619 585765576 1.170000e-06 65.8
19 TraesCS7A01G312000 chr3B 95.455 44 2 0 73 116 537694910 537694867 2.500000e-08 71.3
20 TraesCS7A01G312000 chr5D 87.500 56 5 2 65 119 559101497 559101551 4.190000e-06 63.9
21 TraesCS7A01G312000 chr4A 100.000 28 0 0 289 316 696150719 696150746 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G312000 chr7A 442951080 442956094 5014 True 9262.000000 9262 100.000000 1 5015 1 chr7A.!!$R2 5014
1 TraesCS7A01G312000 chr7B 387644649 387648931 4282 True 3143.000000 5986 91.379000 641 5015 2 chr7B.!!$R2 4374
2 TraesCS7A01G312000 chr7D 390907180 390911437 4257 True 2145.333333 5648 91.981667 634 5015 3 chr7D.!!$R1 4381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
122 123 0.038526 ACAACATCTCCGGTCGTGTC 60.039 55.0 0.00 0.0 0.00 3.67 F
188 189 0.108472 CCGCTGTTGCAGAGATGAGA 60.108 55.0 0.00 0.0 39.64 3.27 F
1022 1040 0.249784 TTTTACACCTGTGCGGCGTA 60.250 50.0 9.37 0.0 35.61 4.42 F
1633 1651 0.384309 TGCGGACGAATGCCTAGTAG 59.616 55.0 0.00 0.0 0.00 2.57 F
1634 1652 0.384669 GCGGACGAATGCCTAGTAGT 59.615 55.0 0.00 0.0 0.00 2.73 F
2178 2198 0.822944 CCATGGGTGTGTTGCAGTCA 60.823 55.0 2.85 0.0 0.00 3.41 F
3653 3706 0.973632 TACACCACACTGGCGAAGAT 59.026 50.0 0.00 0.0 42.67 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1489 0.880278 CCGTACATGGCCATCTTCCG 60.880 60.000 17.61 15.17 0.00 4.30 R
2180 2200 0.175531 AAACACAAACCTGCCAGTGC 59.824 50.000 0.00 0.00 35.47 4.40 R
2612 2634 0.595310 GGATCCGCGTCTTGCTCTAC 60.595 60.000 4.92 0.00 43.27 2.59 R
3042 3088 1.133025 GAATCATTTGGGGTGCTCACG 59.867 52.381 0.00 0.00 0.00 4.35 R
3492 3545 1.146041 AACGGTCTTGCTGAGCACA 59.854 52.632 6.64 0.00 42.88 4.57 R
3910 3963 0.119155 ACTTCACATGGGGAGGGAGA 59.881 55.000 8.49 0.00 0.00 3.71 R
4969 5042 2.306805 TGCATCCTTGACTTCACTGGAT 59.693 45.455 6.99 6.99 38.89 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.730420 TTTTTCTCTAATTTTCTGCAACAGTAC 57.270 29.630 0.00 0.00 32.61 2.73
27 28 8.677148 TTTCTCTAATTTTCTGCAACAGTACT 57.323 30.769 0.00 0.00 32.61 2.73
28 29 7.891183 TCTCTAATTTTCTGCAACAGTACTC 57.109 36.000 0.00 0.00 32.61 2.59
29 30 7.671302 TCTCTAATTTTCTGCAACAGTACTCT 58.329 34.615 0.00 0.00 32.61 3.24
30 31 8.150945 TCTCTAATTTTCTGCAACAGTACTCTT 58.849 33.333 0.00 0.00 32.61 2.85
31 32 9.424319 CTCTAATTTTCTGCAACAGTACTCTTA 57.576 33.333 0.00 0.00 32.61 2.10
32 33 9.944376 TCTAATTTTCTGCAACAGTACTCTTAT 57.056 29.630 0.00 0.00 32.61 1.73
35 36 7.801716 TTTTCTGCAACAGTACTCTTATTGT 57.198 32.000 0.00 0.00 32.61 2.71
36 37 8.896320 TTTTCTGCAACAGTACTCTTATTGTA 57.104 30.769 0.00 0.00 32.61 2.41
37 38 8.534333 TTTCTGCAACAGTACTCTTATTGTAG 57.466 34.615 13.29 13.29 35.20 2.74
38 39 7.462571 TCTGCAACAGTACTCTTATTGTAGA 57.537 36.000 16.08 16.08 38.94 2.59
39 40 7.892609 TCTGCAACAGTACTCTTATTGTAGAA 58.107 34.615 17.00 7.37 38.51 2.10
40 41 8.029522 TCTGCAACAGTACTCTTATTGTAGAAG 58.970 37.037 17.00 7.84 38.51 2.85
41 42 7.667557 TGCAACAGTACTCTTATTGTAGAAGT 58.332 34.615 0.00 0.00 28.51 3.01
42 43 8.148351 TGCAACAGTACTCTTATTGTAGAAGTT 58.852 33.333 0.00 0.00 28.51 2.66
43 44 8.436200 GCAACAGTACTCTTATTGTAGAAGTTG 58.564 37.037 0.00 1.04 34.25 3.16
44 45 9.477484 CAACAGTACTCTTATTGTAGAAGTTGT 57.523 33.333 0.00 0.00 28.51 3.32
63 64 6.903883 GTTGTAAACTCATATCCGACACAT 57.096 37.500 0.00 0.00 45.32 3.21
64 65 6.934210 GTTGTAAACTCATATCCGACACATC 58.066 40.000 0.00 0.00 45.32 3.06
65 66 6.465439 TGTAAACTCATATCCGACACATCT 57.535 37.500 0.00 0.00 0.00 2.90
66 67 7.576861 TGTAAACTCATATCCGACACATCTA 57.423 36.000 0.00 0.00 0.00 1.98
67 68 8.002984 TGTAAACTCATATCCGACACATCTAA 57.997 34.615 0.00 0.00 0.00 2.10
68 69 8.638873 TGTAAACTCATATCCGACACATCTAAT 58.361 33.333 0.00 0.00 0.00 1.73
69 70 9.477484 GTAAACTCATATCCGACACATCTAATT 57.523 33.333 0.00 0.00 0.00 1.40
70 71 8.964476 AAACTCATATCCGACACATCTAATTT 57.036 30.769 0.00 0.00 0.00 1.82
71 72 8.964476 AACTCATATCCGACACATCTAATTTT 57.036 30.769 0.00 0.00 0.00 1.82
72 73 8.594881 ACTCATATCCGACACATCTAATTTTC 57.405 34.615 0.00 0.00 0.00 2.29
73 74 8.424918 ACTCATATCCGACACATCTAATTTTCT 58.575 33.333 0.00 0.00 0.00 2.52
74 75 8.593492 TCATATCCGACACATCTAATTTTCTG 57.407 34.615 0.00 0.00 0.00 3.02
75 76 5.741388 ATCCGACACATCTAATTTTCTGC 57.259 39.130 0.00 0.00 0.00 4.26
76 77 4.574892 TCCGACACATCTAATTTTCTGCA 58.425 39.130 0.00 0.00 0.00 4.41
77 78 5.000591 TCCGACACATCTAATTTTCTGCAA 58.999 37.500 0.00 0.00 0.00 4.08
78 79 5.088739 CCGACACATCTAATTTTCTGCAAC 58.911 41.667 0.00 0.00 0.00 4.17
79 80 5.334802 CCGACACATCTAATTTTCTGCAACA 60.335 40.000 0.00 0.00 0.00 3.33
80 81 6.142139 CGACACATCTAATTTTCTGCAACAA 58.858 36.000 0.00 0.00 0.00 2.83
81 82 6.303970 CGACACATCTAATTTTCTGCAACAAG 59.696 38.462 0.00 0.00 0.00 3.16
82 83 7.275888 ACACATCTAATTTTCTGCAACAAGA 57.724 32.000 0.00 0.00 0.00 3.02
83 84 7.141363 ACACATCTAATTTTCTGCAACAAGAC 58.859 34.615 0.00 0.00 0.00 3.01
84 85 6.583806 CACATCTAATTTTCTGCAACAAGACC 59.416 38.462 0.00 0.00 0.00 3.85
85 86 6.491403 ACATCTAATTTTCTGCAACAAGACCT 59.509 34.615 0.00 0.00 0.00 3.85
86 87 7.665559 ACATCTAATTTTCTGCAACAAGACCTA 59.334 33.333 0.00 0.00 0.00 3.08
87 88 8.680903 CATCTAATTTTCTGCAACAAGACCTAT 58.319 33.333 0.00 0.00 0.00 2.57
88 89 8.044060 TCTAATTTTCTGCAACAAGACCTATG 57.956 34.615 0.00 0.00 0.00 2.23
89 90 6.655078 AATTTTCTGCAACAAGACCTATGT 57.345 33.333 0.00 0.00 0.00 2.29
90 91 6.655078 ATTTTCTGCAACAAGACCTATGTT 57.345 33.333 0.00 0.00 41.50 2.71
100 101 7.481275 AACAAGACCTATGTTGCAAAAATTG 57.519 32.000 0.00 0.00 39.43 2.32
114 115 5.009048 CAAAAATTGCAACAACATCTCCG 57.991 39.130 0.00 0.00 0.00 4.63
115 116 3.302365 AAATTGCAACAACATCTCCGG 57.698 42.857 0.00 0.00 0.00 5.14
116 117 1.909700 ATTGCAACAACATCTCCGGT 58.090 45.000 0.00 0.00 0.00 5.28
117 118 1.234821 TTGCAACAACATCTCCGGTC 58.765 50.000 0.00 0.00 0.00 4.79
118 119 0.948623 TGCAACAACATCTCCGGTCG 60.949 55.000 0.00 0.00 0.00 4.79
119 120 0.949105 GCAACAACATCTCCGGTCGT 60.949 55.000 0.00 0.00 0.00 4.34
120 121 0.790207 CAACAACATCTCCGGTCGTG 59.210 55.000 0.00 0.89 0.00 4.35
121 122 0.391597 AACAACATCTCCGGTCGTGT 59.608 50.000 0.00 1.60 0.00 4.49
122 123 0.038526 ACAACATCTCCGGTCGTGTC 60.039 55.000 0.00 0.00 0.00 3.67
123 124 0.243907 CAACATCTCCGGTCGTGTCT 59.756 55.000 0.00 0.00 0.00 3.41
124 125 0.526662 AACATCTCCGGTCGTGTCTC 59.473 55.000 0.00 0.00 0.00 3.36
125 126 1.062685 CATCTCCGGTCGTGTCTCG 59.937 63.158 0.00 0.00 41.41 4.04
126 127 2.762234 ATCTCCGGTCGTGTCTCGC 61.762 63.158 0.00 0.00 39.67 5.03
127 128 3.733960 CTCCGGTCGTGTCTCGCA 61.734 66.667 0.00 0.00 39.67 5.10
128 129 3.948086 CTCCGGTCGTGTCTCGCAC 62.948 68.421 0.00 0.00 44.36 5.34
129 130 4.039357 CCGGTCGTGTCTCGCACT 62.039 66.667 0.00 0.00 45.57 4.40
130 131 2.050351 CGGTCGTGTCTCGCACTT 60.050 61.111 0.00 0.00 45.57 3.16
131 132 2.365068 CGGTCGTGTCTCGCACTTG 61.365 63.158 0.00 0.00 45.57 3.16
132 133 2.658707 GGTCGTGTCTCGCACTTGC 61.659 63.158 0.00 0.00 45.57 4.01
133 134 1.949133 GTCGTGTCTCGCACTTGCA 60.949 57.895 1.48 0.00 45.57 4.08
134 135 1.949133 TCGTGTCTCGCACTTGCAC 60.949 57.895 1.48 0.00 45.57 4.57
135 136 2.237066 CGTGTCTCGCACTTGCACA 61.237 57.895 1.48 0.00 45.57 4.57
136 137 1.566563 GTGTCTCGCACTTGCACAG 59.433 57.895 1.48 0.00 44.41 3.66
137 138 1.143838 TGTCTCGCACTTGCACAGT 59.856 52.632 1.48 0.00 42.21 3.55
138 139 0.875908 TGTCTCGCACTTGCACAGTC 60.876 55.000 1.48 0.00 42.21 3.51
139 140 1.661509 TCTCGCACTTGCACAGTCG 60.662 57.895 1.48 0.89 42.21 4.18
140 141 1.951130 CTCGCACTTGCACAGTCGT 60.951 57.895 1.48 0.00 42.21 4.34
141 142 1.880601 CTCGCACTTGCACAGTCGTC 61.881 60.000 1.48 0.00 42.21 4.20
142 143 2.546321 GCACTTGCACAGTCGTCG 59.454 61.111 0.00 0.00 41.59 5.12
143 144 2.237751 GCACTTGCACAGTCGTCGT 61.238 57.895 0.00 0.00 41.59 4.34
144 145 1.846648 CACTTGCACAGTCGTCGTC 59.153 57.895 0.00 0.00 30.92 4.20
145 146 1.299926 ACTTGCACAGTCGTCGTCC 60.300 57.895 0.00 0.00 0.00 4.79
146 147 2.354188 TTGCACAGTCGTCGTCCG 60.354 61.111 0.00 0.00 38.13 4.79
147 148 4.994201 TGCACAGTCGTCGTCCGC 62.994 66.667 0.00 0.00 36.19 5.54
148 149 4.702081 GCACAGTCGTCGTCCGCT 62.702 66.667 0.00 0.00 36.19 5.52
149 150 2.801162 CACAGTCGTCGTCCGCTG 60.801 66.667 14.44 14.44 42.51 5.18
150 151 4.702081 ACAGTCGTCGTCCGCTGC 62.702 66.667 15.28 0.00 41.38 5.25
156 157 4.760047 GTCGTCCGCTGCCACCAT 62.760 66.667 0.00 0.00 0.00 3.55
157 158 4.015406 TCGTCCGCTGCCACCATT 62.015 61.111 0.00 0.00 0.00 3.16
158 159 3.499737 CGTCCGCTGCCACCATTC 61.500 66.667 0.00 0.00 0.00 2.67
159 160 2.045926 GTCCGCTGCCACCATTCT 60.046 61.111 0.00 0.00 0.00 2.40
160 161 1.220749 GTCCGCTGCCACCATTCTA 59.779 57.895 0.00 0.00 0.00 2.10
161 162 1.090052 GTCCGCTGCCACCATTCTAC 61.090 60.000 0.00 0.00 0.00 2.59
162 163 1.078497 CCGCTGCCACCATTCTACA 60.078 57.895 0.00 0.00 0.00 2.74
163 164 0.676466 CCGCTGCCACCATTCTACAA 60.676 55.000 0.00 0.00 0.00 2.41
164 165 0.447801 CGCTGCCACCATTCTACAAC 59.552 55.000 0.00 0.00 0.00 3.32
165 166 1.533625 GCTGCCACCATTCTACAACA 58.466 50.000 0.00 0.00 0.00 3.33
166 167 1.200020 GCTGCCACCATTCTACAACAC 59.800 52.381 0.00 0.00 0.00 3.32
167 168 1.812571 CTGCCACCATTCTACAACACC 59.187 52.381 0.00 0.00 0.00 4.16
168 169 1.143889 TGCCACCATTCTACAACACCA 59.856 47.619 0.00 0.00 0.00 4.17
169 170 1.539827 GCCACCATTCTACAACACCAC 59.460 52.381 0.00 0.00 0.00 4.16
170 171 2.159382 CCACCATTCTACAACACCACC 58.841 52.381 0.00 0.00 0.00 4.61
171 172 1.804151 CACCATTCTACAACACCACCG 59.196 52.381 0.00 0.00 0.00 4.94
172 173 0.802494 CCATTCTACAACACCACCGC 59.198 55.000 0.00 0.00 0.00 5.68
173 174 1.610624 CCATTCTACAACACCACCGCT 60.611 52.381 0.00 0.00 0.00 5.52
174 175 1.464608 CATTCTACAACACCACCGCTG 59.535 52.381 0.00 0.00 0.00 5.18
175 176 0.466543 TTCTACAACACCACCGCTGT 59.533 50.000 0.00 0.00 0.00 4.40
176 177 0.466543 TCTACAACACCACCGCTGTT 59.533 50.000 0.00 0.00 31.80 3.16
178 179 2.026014 CAACACCACCGCTGTTGC 59.974 61.111 3.20 0.00 41.45 4.17
179 180 2.439338 AACACCACCGCTGTTGCA 60.439 55.556 0.00 0.00 39.64 4.08
180 181 2.480610 AACACCACCGCTGTTGCAG 61.481 57.895 0.00 0.00 39.64 4.41
181 182 2.591429 CACCACCGCTGTTGCAGA 60.591 61.111 0.00 0.00 39.64 4.26
182 183 2.281070 ACCACCGCTGTTGCAGAG 60.281 61.111 0.00 0.00 39.64 3.35
183 184 2.031012 CCACCGCTGTTGCAGAGA 59.969 61.111 0.00 0.00 39.64 3.10
184 185 1.376424 CCACCGCTGTTGCAGAGAT 60.376 57.895 0.00 0.00 39.64 2.75
185 186 1.642037 CCACCGCTGTTGCAGAGATG 61.642 60.000 0.00 0.00 39.64 2.90
186 187 0.671472 CACCGCTGTTGCAGAGATGA 60.671 55.000 0.00 0.00 39.64 2.92
187 188 0.390866 ACCGCTGTTGCAGAGATGAG 60.391 55.000 0.00 0.00 39.64 2.90
188 189 0.108472 CCGCTGTTGCAGAGATGAGA 60.108 55.000 0.00 0.00 39.64 3.27
189 190 1.472904 CCGCTGTTGCAGAGATGAGAT 60.473 52.381 0.00 0.00 39.64 2.75
190 191 1.593469 CGCTGTTGCAGAGATGAGATG 59.407 52.381 0.00 0.00 39.64 2.90
191 192 2.737679 CGCTGTTGCAGAGATGAGATGA 60.738 50.000 0.00 0.00 39.64 2.92
192 193 2.867368 GCTGTTGCAGAGATGAGATGAG 59.133 50.000 0.00 0.00 39.41 2.90
193 194 3.430513 GCTGTTGCAGAGATGAGATGAGA 60.431 47.826 0.00 0.00 39.41 3.27
194 195 4.756502 CTGTTGCAGAGATGAGATGAGAA 58.243 43.478 0.00 0.00 32.44 2.87
195 196 5.156608 TGTTGCAGAGATGAGATGAGAAA 57.843 39.130 0.00 0.00 0.00 2.52
196 197 5.176592 TGTTGCAGAGATGAGATGAGAAAG 58.823 41.667 0.00 0.00 0.00 2.62
197 198 5.046807 TGTTGCAGAGATGAGATGAGAAAGA 60.047 40.000 0.00 0.00 0.00 2.52
198 199 5.265350 TGCAGAGATGAGATGAGAAAGAG 57.735 43.478 0.00 0.00 0.00 2.85
199 200 4.954826 TGCAGAGATGAGATGAGAAAGAGA 59.045 41.667 0.00 0.00 0.00 3.10
200 201 5.068067 TGCAGAGATGAGATGAGAAAGAGAG 59.932 44.000 0.00 0.00 0.00 3.20
201 202 5.300034 GCAGAGATGAGATGAGAAAGAGAGA 59.700 44.000 0.00 0.00 0.00 3.10
202 203 6.015688 GCAGAGATGAGATGAGAAAGAGAGAT 60.016 42.308 0.00 0.00 0.00 2.75
203 204 7.368059 CAGAGATGAGATGAGAAAGAGAGATG 58.632 42.308 0.00 0.00 0.00 2.90
204 205 7.013942 CAGAGATGAGATGAGAAAGAGAGATGT 59.986 40.741 0.00 0.00 0.00 3.06
205 206 7.013942 AGAGATGAGATGAGAAAGAGAGATGTG 59.986 40.741 0.00 0.00 0.00 3.21
206 207 5.008619 TGAGATGAGAAAGAGAGATGTGC 57.991 43.478 0.00 0.00 0.00 4.57
207 208 4.710865 TGAGATGAGAAAGAGAGATGTGCT 59.289 41.667 0.00 0.00 0.00 4.40
208 209 5.163530 TGAGATGAGAAAGAGAGATGTGCTC 60.164 44.000 0.00 0.00 44.29 4.26
209 210 4.710865 AGATGAGAAAGAGAGATGTGCTCA 59.289 41.667 0.00 0.00 46.45 4.26
210 211 5.364446 AGATGAGAAAGAGAGATGTGCTCAT 59.636 40.000 0.00 0.00 46.45 2.90
211 212 4.756502 TGAGAAAGAGAGATGTGCTCATG 58.243 43.478 5.89 0.00 46.45 3.07
212 213 4.222366 TGAGAAAGAGAGATGTGCTCATGT 59.778 41.667 5.89 1.37 46.45 3.21
213 214 5.420104 TGAGAAAGAGAGATGTGCTCATGTA 59.580 40.000 5.89 0.00 46.45 2.29
214 215 5.904941 AGAAAGAGAGATGTGCTCATGTAG 58.095 41.667 5.89 0.00 46.45 2.74
215 216 5.655974 AGAAAGAGAGATGTGCTCATGTAGA 59.344 40.000 5.89 0.00 46.45 2.59
216 217 4.916983 AGAGAGATGTGCTCATGTAGAC 57.083 45.455 5.89 0.00 46.45 2.59
217 218 3.636300 AGAGAGATGTGCTCATGTAGACC 59.364 47.826 5.89 0.00 46.45 3.85
218 219 3.369175 AGAGATGTGCTCATGTAGACCA 58.631 45.455 5.89 0.00 46.45 4.02
219 220 3.131933 AGAGATGTGCTCATGTAGACCAC 59.868 47.826 5.89 0.00 46.45 4.16
220 221 2.159184 AGATGTGCTCATGTAGACCACG 60.159 50.000 5.89 0.00 35.92 4.94
221 222 0.966179 TGTGCTCATGTAGACCACGT 59.034 50.000 0.00 0.00 35.92 4.49
222 223 1.336795 TGTGCTCATGTAGACCACGTG 60.337 52.381 9.08 9.08 44.31 4.49
223 224 0.966179 TGCTCATGTAGACCACGTGT 59.034 50.000 15.65 2.26 43.53 4.49
224 225 1.343142 TGCTCATGTAGACCACGTGTT 59.657 47.619 15.65 0.00 43.53 3.32
225 226 1.726791 GCTCATGTAGACCACGTGTTG 59.273 52.381 15.65 2.14 43.53 3.33
226 227 2.609491 GCTCATGTAGACCACGTGTTGA 60.609 50.000 15.65 4.97 43.53 3.18
227 228 3.245797 CTCATGTAGACCACGTGTTGAG 58.754 50.000 15.65 10.34 43.53 3.02
228 229 1.726791 CATGTAGACCACGTGTTGAGC 59.273 52.381 15.65 2.38 39.04 4.26
229 230 0.747852 TGTAGACCACGTGTTGAGCA 59.252 50.000 15.65 5.09 0.00 4.26
230 231 1.137282 TGTAGACCACGTGTTGAGCAA 59.863 47.619 15.65 0.00 0.00 3.91
231 232 1.792949 GTAGACCACGTGTTGAGCAAG 59.207 52.381 15.65 0.00 0.00 4.01
232 233 0.532862 AGACCACGTGTTGAGCAAGG 60.533 55.000 15.65 0.00 0.00 3.61
233 234 1.507141 GACCACGTGTTGAGCAAGGG 61.507 60.000 15.65 0.00 0.00 3.95
234 235 1.227823 CCACGTGTTGAGCAAGGGA 60.228 57.895 15.65 0.00 31.41 4.20
235 236 1.230635 CCACGTGTTGAGCAAGGGAG 61.231 60.000 15.65 0.00 31.41 4.30
236 237 1.071471 ACGTGTTGAGCAAGGGAGG 59.929 57.895 0.00 0.00 0.00 4.30
237 238 1.071471 CGTGTTGAGCAAGGGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
238 239 1.230635 CGTGTTGAGCAAGGGAGGTG 61.231 60.000 0.00 0.00 0.00 4.00
239 240 0.890996 GTGTTGAGCAAGGGAGGTGG 60.891 60.000 0.00 0.00 0.00 4.61
240 241 1.973812 GTTGAGCAAGGGAGGTGGC 60.974 63.158 0.00 0.00 0.00 5.01
241 242 3.551496 TTGAGCAAGGGAGGTGGCG 62.551 63.158 0.00 0.00 0.00 5.69
242 243 4.785453 GAGCAAGGGAGGTGGCGG 62.785 72.222 0.00 0.00 0.00 6.13
245 246 4.760047 CAAGGGAGGTGGCGGACG 62.760 72.222 0.00 0.00 0.00 4.79
261 262 2.561885 CGCCCTACGCTAGATCGG 59.438 66.667 0.00 0.00 34.21 4.18
262 263 2.258897 GCCCTACGCTAGATCGGC 59.741 66.667 0.00 4.07 0.00 5.54
263 264 2.963371 CCCTACGCTAGATCGGCC 59.037 66.667 0.00 0.00 0.00 6.13
264 265 2.561885 CCTACGCTAGATCGGCCG 59.438 66.667 22.12 22.12 0.00 6.13
265 266 1.964891 CCTACGCTAGATCGGCCGA 60.965 63.158 33.12 33.12 0.00 5.54
266 267 1.207085 CTACGCTAGATCGGCCGAC 59.793 63.158 33.75 23.63 0.00 4.79
267 268 1.227764 TACGCTAGATCGGCCGACT 60.228 57.895 33.75 28.86 0.00 4.18
268 269 1.504647 TACGCTAGATCGGCCGACTG 61.505 60.000 33.75 20.76 0.00 3.51
269 270 2.543802 CGCTAGATCGGCCGACTGA 61.544 63.158 33.75 17.27 35.06 3.41
270 271 1.857318 CGCTAGATCGGCCGACTGAT 61.857 60.000 33.75 15.81 44.93 2.90
271 272 0.315568 GCTAGATCGGCCGACTGATT 59.684 55.000 33.75 15.33 42.19 2.57
272 273 1.540267 GCTAGATCGGCCGACTGATTA 59.460 52.381 33.75 16.62 42.19 1.75
273 274 2.030185 GCTAGATCGGCCGACTGATTAA 60.030 50.000 33.75 12.67 42.19 1.40
274 275 3.552273 GCTAGATCGGCCGACTGATTAAA 60.552 47.826 33.75 11.99 42.19 1.52
275 276 3.536956 AGATCGGCCGACTGATTAAAA 57.463 42.857 33.75 3.58 42.19 1.52
276 277 4.073293 AGATCGGCCGACTGATTAAAAT 57.927 40.909 33.75 10.73 42.19 1.82
277 278 4.058817 AGATCGGCCGACTGATTAAAATC 58.941 43.478 33.75 19.75 42.19 2.17
278 279 3.254470 TCGGCCGACTGATTAAAATCA 57.746 42.857 27.28 5.34 42.78 2.57
279 280 3.804036 TCGGCCGACTGATTAAAATCAT 58.196 40.909 27.28 0.00 43.87 2.45
280 281 4.196193 TCGGCCGACTGATTAAAATCATT 58.804 39.130 27.28 0.84 43.87 2.57
281 282 4.638421 TCGGCCGACTGATTAAAATCATTT 59.362 37.500 27.28 0.00 43.87 2.32
282 283 5.124776 TCGGCCGACTGATTAAAATCATTTT 59.875 36.000 27.28 0.02 43.87 1.82
283 284 5.455525 CGGCCGACTGATTAAAATCATTTTC 59.544 40.000 24.07 3.37 43.87 2.29
284 285 5.748630 GGCCGACTGATTAAAATCATTTTCC 59.251 40.000 0.00 1.96 43.87 3.13
285 286 6.329496 GCCGACTGATTAAAATCATTTTCCA 58.671 36.000 0.00 0.00 43.87 3.53
286 287 6.980397 GCCGACTGATTAAAATCATTTTCCAT 59.020 34.615 0.00 0.00 43.87 3.41
287 288 8.134895 GCCGACTGATTAAAATCATTTTCCATA 58.865 33.333 0.00 0.00 43.87 2.74
325 326 8.834004 TGTTGTTAGTTATATACTCCCTCTGT 57.166 34.615 0.00 0.00 38.33 3.41
326 327 9.263446 TGTTGTTAGTTATATACTCCCTCTGTT 57.737 33.333 0.00 0.00 38.33 3.16
327 328 9.747293 GTTGTTAGTTATATACTCCCTCTGTTC 57.253 37.037 0.00 0.00 38.33 3.18
328 329 9.483489 TTGTTAGTTATATACTCCCTCTGTTCA 57.517 33.333 0.00 0.00 38.33 3.18
329 330 9.656323 TGTTAGTTATATACTCCCTCTGTTCAT 57.344 33.333 0.00 0.00 38.33 2.57
330 331 9.915629 GTTAGTTATATACTCCCTCTGTTCATG 57.084 37.037 0.00 0.00 38.33 3.07
331 332 9.877222 TTAGTTATATACTCCCTCTGTTCATGA 57.123 33.333 0.00 0.00 38.33 3.07
332 333 8.783660 AGTTATATACTCCCTCTGTTCATGAA 57.216 34.615 3.38 3.38 28.23 2.57
333 334 9.386122 AGTTATATACTCCCTCTGTTCATGAAT 57.614 33.333 12.12 0.00 28.23 2.57
337 338 7.682787 ATACTCCCTCTGTTCATGAATAAGT 57.317 36.000 12.12 10.95 0.00 2.24
338 339 8.783660 ATACTCCCTCTGTTCATGAATAAGTA 57.216 34.615 12.12 12.68 0.00 2.24
339 340 6.879400 ACTCCCTCTGTTCATGAATAAGTAC 58.121 40.000 12.12 0.00 0.00 2.73
340 341 6.670027 ACTCCCTCTGTTCATGAATAAGTACT 59.330 38.462 12.12 0.00 0.00 2.73
341 342 7.181125 ACTCCCTCTGTTCATGAATAAGTACTT 59.819 37.037 12.12 13.68 0.00 2.24
342 343 7.556844 TCCCTCTGTTCATGAATAAGTACTTC 58.443 38.462 12.39 0.00 0.00 3.01
343 344 7.400339 TCCCTCTGTTCATGAATAAGTACTTCT 59.600 37.037 12.39 0.00 0.00 2.85
344 345 8.696374 CCCTCTGTTCATGAATAAGTACTTCTA 58.304 37.037 12.39 0.00 0.00 2.10
345 346 9.522804 CCTCTGTTCATGAATAAGTACTTCTAC 57.477 37.037 12.39 5.25 0.00 2.59
346 347 9.522804 CTCTGTTCATGAATAAGTACTTCTACC 57.477 37.037 12.39 1.10 0.00 3.18
347 348 9.256228 TCTGTTCATGAATAAGTACTTCTACCT 57.744 33.333 12.39 0.00 0.00 3.08
348 349 9.877178 CTGTTCATGAATAAGTACTTCTACCTT 57.123 33.333 12.39 0.00 0.00 3.50
355 356 9.841295 TGAATAAGTACTTCTACCTTTTGTGTT 57.159 29.630 12.39 0.00 0.00 3.32
360 361 8.883954 AGTACTTCTACCTTTTGTGTTAAGTC 57.116 34.615 0.00 0.00 31.29 3.01
361 362 8.480501 AGTACTTCTACCTTTTGTGTTAAGTCA 58.519 33.333 0.00 0.00 31.29 3.41
362 363 9.101655 GTACTTCTACCTTTTGTGTTAAGTCAA 57.898 33.333 0.00 0.00 31.29 3.18
363 364 8.570068 ACTTCTACCTTTTGTGTTAAGTCAAA 57.430 30.769 2.18 2.18 32.75 2.69
364 365 9.185680 ACTTCTACCTTTTGTGTTAAGTCAAAT 57.814 29.630 6.02 0.00 34.30 2.32
522 523 9.494271 AGTTGATGCAGATATACATTTATTCGT 57.506 29.630 0.00 0.00 0.00 3.85
523 524 9.533983 GTTGATGCAGATATACATTTATTCGTG 57.466 33.333 0.00 0.00 0.00 4.35
524 525 8.255394 TGATGCAGATATACATTTATTCGTGG 57.745 34.615 0.00 0.00 0.00 4.94
525 526 8.093927 TGATGCAGATATACATTTATTCGTGGA 58.906 33.333 0.00 0.00 0.00 4.02
526 527 7.652300 TGCAGATATACATTTATTCGTGGAC 57.348 36.000 0.00 0.00 0.00 4.02
527 528 6.364976 TGCAGATATACATTTATTCGTGGACG 59.635 38.462 0.00 0.00 41.45 4.79
528 529 6.183360 GCAGATATACATTTATTCGTGGACGG 60.183 42.308 0.00 0.00 40.29 4.79
529 530 7.088272 CAGATATACATTTATTCGTGGACGGA 58.912 38.462 0.00 0.00 40.29 4.69
530 531 7.759886 CAGATATACATTTATTCGTGGACGGAT 59.240 37.037 0.00 0.00 41.16 4.18
531 532 7.759886 AGATATACATTTATTCGTGGACGGATG 59.240 37.037 3.10 2.24 38.20 3.51
532 533 3.202906 ACATTTATTCGTGGACGGATGG 58.797 45.455 3.10 0.00 38.20 3.51
533 534 3.118555 ACATTTATTCGTGGACGGATGGA 60.119 43.478 3.10 0.00 38.20 3.41
534 535 2.882927 TTATTCGTGGACGGATGGAG 57.117 50.000 3.10 0.00 38.20 3.86
535 536 1.771565 TATTCGTGGACGGATGGAGT 58.228 50.000 3.10 0.00 38.20 3.85
536 537 1.771565 ATTCGTGGACGGATGGAGTA 58.228 50.000 0.00 0.00 35.99 2.59
537 538 1.548081 TTCGTGGACGGATGGAGTAA 58.452 50.000 0.00 0.00 40.29 2.24
538 539 1.548081 TCGTGGACGGATGGAGTAAA 58.452 50.000 0.00 0.00 40.29 2.01
539 540 2.104967 TCGTGGACGGATGGAGTAAAT 58.895 47.619 0.00 0.00 40.29 1.40
540 541 3.289836 TCGTGGACGGATGGAGTAAATA 58.710 45.455 0.00 0.00 40.29 1.40
541 542 3.317149 TCGTGGACGGATGGAGTAAATAG 59.683 47.826 0.00 0.00 40.29 1.73
542 543 3.067742 CGTGGACGGATGGAGTAAATAGT 59.932 47.826 0.00 0.00 35.37 2.12
543 544 4.441079 CGTGGACGGATGGAGTAAATAGTT 60.441 45.833 0.00 0.00 35.37 2.24
544 545 5.221106 CGTGGACGGATGGAGTAAATAGTTA 60.221 44.000 0.00 0.00 35.37 2.24
545 546 6.576185 GTGGACGGATGGAGTAAATAGTTAA 58.424 40.000 0.00 0.00 0.00 2.01
546 547 7.043565 GTGGACGGATGGAGTAAATAGTTAAA 58.956 38.462 0.00 0.00 0.00 1.52
547 548 7.550196 GTGGACGGATGGAGTAAATAGTTAAAA 59.450 37.037 0.00 0.00 0.00 1.52
548 549 8.269317 TGGACGGATGGAGTAAATAGTTAAAAT 58.731 33.333 0.00 0.00 0.00 1.82
549 550 9.117183 GGACGGATGGAGTAAATAGTTAAAATT 57.883 33.333 0.00 0.00 0.00 1.82
570 571 7.745620 AATTTGATTCAAAGTACGAAGGAGT 57.254 32.000 16.34 0.00 36.76 3.85
571 572 6.780706 TTTGATTCAAAGTACGAAGGAGTC 57.219 37.500 7.74 0.00 0.00 3.36
572 573 5.723672 TGATTCAAAGTACGAAGGAGTCT 57.276 39.130 0.00 0.00 0.00 3.24
573 574 6.829229 TGATTCAAAGTACGAAGGAGTCTA 57.171 37.500 0.00 0.00 0.00 2.59
574 575 7.223260 TGATTCAAAGTACGAAGGAGTCTAA 57.777 36.000 0.00 0.00 0.00 2.10
575 576 7.837863 TGATTCAAAGTACGAAGGAGTCTAAT 58.162 34.615 0.00 0.00 0.00 1.73
576 577 8.963725 TGATTCAAAGTACGAAGGAGTCTAATA 58.036 33.333 0.00 0.00 0.00 0.98
577 578 9.798994 GATTCAAAGTACGAAGGAGTCTAATAA 57.201 33.333 0.00 0.00 0.00 1.40
579 580 8.976986 TCAAAGTACGAAGGAGTCTAATAAAC 57.023 34.615 0.00 0.00 0.00 2.01
580 581 8.031277 TCAAAGTACGAAGGAGTCTAATAAACC 58.969 37.037 0.00 0.00 0.00 3.27
581 582 6.462552 AGTACGAAGGAGTCTAATAAACCC 57.537 41.667 0.00 0.00 0.00 4.11
582 583 4.382345 ACGAAGGAGTCTAATAAACCCG 57.618 45.455 0.00 0.00 0.00 5.28
583 584 3.131755 ACGAAGGAGTCTAATAAACCCGG 59.868 47.826 0.00 0.00 0.00 5.73
584 585 3.382546 CGAAGGAGTCTAATAAACCCGGA 59.617 47.826 0.73 0.00 0.00 5.14
585 586 4.499357 CGAAGGAGTCTAATAAACCCGGAG 60.499 50.000 0.73 0.00 0.00 4.63
586 587 4.261411 AGGAGTCTAATAAACCCGGAGA 57.739 45.455 0.73 0.00 0.00 3.71
587 588 3.959449 AGGAGTCTAATAAACCCGGAGAC 59.041 47.826 0.73 6.00 37.41 3.36
600 601 3.502237 GGAGACGGCGAAAGTACAA 57.498 52.632 16.62 0.00 0.00 2.41
601 602 2.005971 GGAGACGGCGAAAGTACAAT 57.994 50.000 16.62 0.00 0.00 2.71
602 603 3.155093 GGAGACGGCGAAAGTACAATA 57.845 47.619 16.62 0.00 0.00 1.90
603 604 3.714391 GGAGACGGCGAAAGTACAATAT 58.286 45.455 16.62 0.00 0.00 1.28
604 605 4.863491 GGAGACGGCGAAAGTACAATATA 58.137 43.478 16.62 0.00 0.00 0.86
605 606 5.284079 GGAGACGGCGAAAGTACAATATAA 58.716 41.667 16.62 0.00 0.00 0.98
606 607 5.750067 GGAGACGGCGAAAGTACAATATAAA 59.250 40.000 16.62 0.00 0.00 1.40
607 608 6.256321 GGAGACGGCGAAAGTACAATATAAAA 59.744 38.462 16.62 0.00 0.00 1.52
608 609 7.201548 GGAGACGGCGAAAGTACAATATAAAAA 60.202 37.037 16.62 0.00 0.00 1.94
629 630 7.396540 AAAAATGCGTATTCCTCTGAGATTT 57.603 32.000 6.17 0.00 0.00 2.17
630 631 7.396540 AAAATGCGTATTCCTCTGAGATTTT 57.603 32.000 6.17 5.14 0.00 1.82
631 632 8.506168 AAAATGCGTATTCCTCTGAGATTTTA 57.494 30.769 6.17 0.00 0.00 1.52
632 633 7.721286 AATGCGTATTCCTCTGAGATTTTAG 57.279 36.000 6.17 0.00 0.00 1.85
633 634 5.601662 TGCGTATTCCTCTGAGATTTTAGG 58.398 41.667 6.17 0.34 0.00 2.69
634 635 5.128827 TGCGTATTCCTCTGAGATTTTAGGT 59.871 40.000 6.17 0.00 0.00 3.08
635 636 6.322969 TGCGTATTCCTCTGAGATTTTAGGTA 59.677 38.462 6.17 0.00 0.00 3.08
636 637 6.864165 GCGTATTCCTCTGAGATTTTAGGTAG 59.136 42.308 6.17 0.00 0.00 3.18
637 638 7.470286 GCGTATTCCTCTGAGATTTTAGGTAGT 60.470 40.741 6.17 0.00 0.00 2.73
638 639 8.414778 CGTATTCCTCTGAGATTTTAGGTAGTT 58.585 37.037 6.17 0.00 0.00 2.24
742 745 0.729140 CACGCAAATCGAAAGGCACC 60.729 55.000 0.00 0.00 41.67 5.01
762 765 3.263941 GCAAAGGCACCTACACCG 58.736 61.111 0.00 0.00 40.72 4.94
772 775 0.686769 ACCTACACCGTCCTGGGATC 60.687 60.000 0.00 0.00 44.64 3.36
864 882 3.322466 CCCTCGCCACTCCAACCT 61.322 66.667 0.00 0.00 0.00 3.50
868 886 2.743928 CGCCACTCCAACCTGCTC 60.744 66.667 0.00 0.00 0.00 4.26
869 887 2.360475 GCCACTCCAACCTGCTCC 60.360 66.667 0.00 0.00 0.00 4.70
870 888 2.352805 CCACTCCAACCTGCTCCC 59.647 66.667 0.00 0.00 0.00 4.30
871 889 2.352805 CACTCCAACCTGCTCCCC 59.647 66.667 0.00 0.00 0.00 4.81
872 890 2.936032 ACTCCAACCTGCTCCCCC 60.936 66.667 0.00 0.00 0.00 5.40
873 891 2.935481 CTCCAACCTGCTCCCCCA 60.935 66.667 0.00 0.00 0.00 4.96
874 892 3.256960 TCCAACCTGCTCCCCCAC 61.257 66.667 0.00 0.00 0.00 4.61
875 893 4.366684 CCAACCTGCTCCCCCACC 62.367 72.222 0.00 0.00 0.00 4.61
876 894 4.722700 CAACCTGCTCCCCCACCG 62.723 72.222 0.00 0.00 0.00 4.94
879 897 4.410400 CCTGCTCCCCCACCGTTC 62.410 72.222 0.00 0.00 0.00 3.95
880 898 3.322466 CTGCTCCCCCACCGTTCT 61.322 66.667 0.00 0.00 0.00 3.01
881 899 3.612247 CTGCTCCCCCACCGTTCTG 62.612 68.421 0.00 0.00 0.00 3.02
882 900 3.637273 GCTCCCCCACCGTTCTGT 61.637 66.667 0.00 0.00 0.00 3.41
883 901 2.288025 GCTCCCCCACCGTTCTGTA 61.288 63.158 0.00 0.00 0.00 2.74
884 902 1.833787 GCTCCCCCACCGTTCTGTAA 61.834 60.000 0.00 0.00 0.00 2.41
885 903 0.688487 CTCCCCCACCGTTCTGTAAA 59.312 55.000 0.00 0.00 0.00 2.01
886 904 1.072648 CTCCCCCACCGTTCTGTAAAA 59.927 52.381 0.00 0.00 0.00 1.52
887 905 1.493871 TCCCCCACCGTTCTGTAAAAA 59.506 47.619 0.00 0.00 0.00 1.94
921 939 2.815211 CACCGACATGTGGGCTCG 60.815 66.667 25.23 11.55 32.50 5.03
922 940 4.760047 ACCGACATGTGGGCTCGC 62.760 66.667 25.23 0.00 30.95 5.03
985 1003 3.771160 CCCACTTCCTCGTCCCCG 61.771 72.222 0.00 0.00 0.00 5.73
987 1005 4.452733 CACTTCCTCGTCCCCGCC 62.453 72.222 0.00 0.00 0.00 6.13
988 1006 4.698625 ACTTCCTCGTCCCCGCCT 62.699 66.667 0.00 0.00 0.00 5.52
989 1007 3.391382 CTTCCTCGTCCCCGCCTT 61.391 66.667 0.00 0.00 0.00 4.35
1017 1035 0.454285 CGGCATTTTACACCTGTGCG 60.454 55.000 0.00 0.00 36.70 5.34
1022 1040 0.249784 TTTTACACCTGTGCGGCGTA 60.250 50.000 9.37 0.00 35.61 4.42
1028 1046 4.814294 CTGTGCGGCGTACCCCTC 62.814 72.222 24.76 0.24 0.00 4.30
1032 1050 4.525949 GCGGCGTACCCCTCCTTC 62.526 72.222 9.37 0.00 0.00 3.46
1033 1051 3.846430 CGGCGTACCCCTCCTTCC 61.846 72.222 0.00 0.00 0.00 3.46
1034 1052 2.365237 GGCGTACCCCTCCTTCCT 60.365 66.667 0.00 0.00 0.00 3.36
1035 1053 2.433146 GGCGTACCCCTCCTTCCTC 61.433 68.421 0.00 0.00 0.00 3.71
1036 1054 2.433146 GCGTACCCCTCCTTCCTCC 61.433 68.421 0.00 0.00 0.00 4.30
1037 1055 1.761271 CGTACCCCTCCTTCCTCCC 60.761 68.421 0.00 0.00 0.00 4.30
1038 1056 1.384222 GTACCCCTCCTTCCTCCCC 60.384 68.421 0.00 0.00 0.00 4.81
1039 1057 1.551964 TACCCCTCCTTCCTCCCCT 60.552 63.158 0.00 0.00 0.00 4.79
1040 1058 1.166973 TACCCCTCCTTCCTCCCCTT 61.167 60.000 0.00 0.00 0.00 3.95
1600 1618 1.973138 CAGAGCTCAATTTTGGCGTG 58.027 50.000 17.77 0.00 32.17 5.34
1602 1620 1.267806 AGAGCTCAATTTTGGCGTGTG 59.732 47.619 17.77 0.00 32.17 3.82
1632 1650 0.818938 TTGCGGACGAATGCCTAGTA 59.181 50.000 0.00 0.00 0.00 1.82
1633 1651 0.384309 TGCGGACGAATGCCTAGTAG 59.616 55.000 0.00 0.00 0.00 2.57
1634 1652 0.384669 GCGGACGAATGCCTAGTAGT 59.615 55.000 0.00 0.00 0.00 2.73
1675 1693 4.502259 CGTTGATTGGGGGAATTTTTGTGA 60.502 41.667 0.00 0.00 0.00 3.58
1911 1931 8.197439 GGATTTAGGAAGAAACAATACATTGGG 58.803 37.037 6.87 0.00 41.96 4.12
1940 1960 4.081476 TGAGACTGTGGATGTAAGATGGTG 60.081 45.833 0.00 0.00 0.00 4.17
1986 2006 2.246719 CAGCCCATCTGCTAACCTAC 57.753 55.000 0.00 0.00 40.32 3.18
1987 2007 1.765314 CAGCCCATCTGCTAACCTACT 59.235 52.381 0.00 0.00 40.32 2.57
1988 2008 1.765314 AGCCCATCTGCTAACCTACTG 59.235 52.381 0.00 0.00 40.56 2.74
1989 2009 1.762957 GCCCATCTGCTAACCTACTGA 59.237 52.381 0.00 0.00 0.00 3.41
1990 2010 2.170607 GCCCATCTGCTAACCTACTGAA 59.829 50.000 0.00 0.00 0.00 3.02
1991 2011 3.370527 GCCCATCTGCTAACCTACTGAAA 60.371 47.826 0.00 0.00 0.00 2.69
1992 2012 4.843728 CCCATCTGCTAACCTACTGAAAA 58.156 43.478 0.00 0.00 0.00 2.29
1993 2013 5.440610 CCCATCTGCTAACCTACTGAAAAT 58.559 41.667 0.00 0.00 0.00 1.82
2073 2093 0.984995 GCCTGTCCTTACTTGAGGGT 59.015 55.000 0.00 0.00 37.41 4.34
2112 2132 9.006839 TCGATTCTCGGTTATATATGTTGTAGT 57.993 33.333 0.00 0.00 40.88 2.73
2175 2195 2.652530 GCCATGGGTGTGTTGCAG 59.347 61.111 15.13 0.00 0.00 4.41
2176 2196 2.202395 GCCATGGGTGTGTTGCAGT 61.202 57.895 15.13 0.00 0.00 4.40
2177 2197 1.959085 CCATGGGTGTGTTGCAGTC 59.041 57.895 2.85 0.00 0.00 3.51
2178 2198 0.822944 CCATGGGTGTGTTGCAGTCA 60.823 55.000 2.85 0.00 0.00 3.41
2179 2199 1.250328 CATGGGTGTGTTGCAGTCAT 58.750 50.000 0.00 0.00 0.00 3.06
2180 2200 1.068125 CATGGGTGTGTTGCAGTCATG 60.068 52.381 0.00 0.00 34.64 3.07
2292 2313 2.674796 AATTCCGTGACTAGGACTGC 57.325 50.000 0.00 0.00 37.53 4.40
2310 2332 7.486647 AGGACTGCAAACATTATTCATTCATC 58.513 34.615 0.00 0.00 0.00 2.92
2605 2627 9.093970 CAAGTTATACACTTTGATGATTACGGA 57.906 33.333 0.00 0.00 43.89 4.69
2612 2634 7.138736 ACACTTTGATGATTACGGAAAAGTTG 58.861 34.615 0.00 0.00 36.10 3.16
2817 2839 4.341235 TGGTGGTGATATAGCTGTGAGTAC 59.659 45.833 0.00 0.00 0.00 2.73
3042 3088 5.524284 ACATGCTCGAGTGATTCTACATAC 58.476 41.667 15.13 0.00 0.00 2.39
3492 3545 2.230660 GAGCTAACCCTTGTGCTGTTT 58.769 47.619 0.00 0.00 35.76 2.83
3521 3574 1.056660 AAGACCGTTGTGATCCCAGT 58.943 50.000 0.00 0.00 0.00 4.00
3653 3706 0.973632 TACACCACACTGGCGAAGAT 59.026 50.000 0.00 0.00 42.67 2.40
3747 3800 3.119352 GGTGTTTCTTGATGATTCCCTGC 60.119 47.826 0.00 0.00 0.00 4.85
3825 3878 4.497966 CGAAGCATGCAATTGTTAGACATG 59.502 41.667 21.98 14.91 40.80 3.21
3841 3894 3.270433 AGACATGGGTTCCCTTTGATCAT 59.730 43.478 9.43 0.00 0.00 2.45
3895 3948 3.444388 TGTTGTGTACAGTTTTTGGACCC 59.556 43.478 0.00 0.00 40.16 4.46
3908 3961 2.514824 GACCCGAAGCCAGCATCC 60.515 66.667 0.00 0.00 0.00 3.51
3909 3962 4.115199 ACCCGAAGCCAGCATCCC 62.115 66.667 0.00 0.00 0.00 3.85
3910 3963 3.801997 CCCGAAGCCAGCATCCCT 61.802 66.667 0.00 0.00 0.00 4.20
3911 3964 2.203126 CCGAAGCCAGCATCCCTC 60.203 66.667 0.00 0.00 0.00 4.30
3912 3965 2.739996 CCGAAGCCAGCATCCCTCT 61.740 63.158 0.00 0.00 0.00 3.69
3913 3966 1.227497 CGAAGCCAGCATCCCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
3914 3967 1.148048 GAAGCCAGCATCCCTCTCC 59.852 63.158 0.00 0.00 0.00 3.71
3915 3968 2.336484 GAAGCCAGCATCCCTCTCCC 62.336 65.000 0.00 0.00 0.00 4.30
3916 3969 2.771762 GCCAGCATCCCTCTCCCT 60.772 66.667 0.00 0.00 0.00 4.20
3917 3970 2.817056 GCCAGCATCCCTCTCCCTC 61.817 68.421 0.00 0.00 0.00 4.30
3918 3971 2.146061 CCAGCATCCCTCTCCCTCC 61.146 68.421 0.00 0.00 0.00 4.30
3919 3972 2.146061 CAGCATCCCTCTCCCTCCC 61.146 68.421 0.00 0.00 0.00 4.30
3920 3973 2.851588 GCATCCCTCTCCCTCCCC 60.852 72.222 0.00 0.00 0.00 4.81
3921 3974 2.705410 CATCCCTCTCCCTCCCCA 59.295 66.667 0.00 0.00 0.00 4.96
3922 3975 1.241327 CATCCCTCTCCCTCCCCAT 59.759 63.158 0.00 0.00 0.00 4.00
3923 3976 1.132554 CATCCCTCTCCCTCCCCATG 61.133 65.000 0.00 0.00 0.00 3.66
3924 3977 1.617181 ATCCCTCTCCCTCCCCATGT 61.617 60.000 0.00 0.00 0.00 3.21
3925 3978 2.074948 CCCTCTCCCTCCCCATGTG 61.075 68.421 0.00 0.00 0.00 3.21
3926 3979 1.003442 CCTCTCCCTCCCCATGTGA 59.997 63.158 0.00 0.00 0.00 3.58
3927 3980 0.621571 CCTCTCCCTCCCCATGTGAA 60.622 60.000 0.00 0.00 0.00 3.18
3928 3981 0.835941 CTCTCCCTCCCCATGTGAAG 59.164 60.000 0.00 0.00 0.00 3.02
3929 3982 0.119155 TCTCCCTCCCCATGTGAAGT 59.881 55.000 0.00 0.00 0.00 3.01
3930 3983 0.254178 CTCCCTCCCCATGTGAAGTG 59.746 60.000 0.00 0.00 0.00 3.16
3953 4006 5.876460 TGATATGGCTGTGCATATGTACATC 59.124 40.000 24.27 20.24 39.79 3.06
4037 4093 3.359033 ACTGGATTGTGTTGCTGCATAT 58.641 40.909 1.84 0.00 0.00 1.78
4110 4168 7.775053 ATGTTATTGAAGCAAACTTTAGGGA 57.225 32.000 0.00 0.00 35.82 4.20
4111 4169 7.214467 TGTTATTGAAGCAAACTTTAGGGAG 57.786 36.000 0.00 0.00 35.82 4.30
4112 4170 7.001674 TGTTATTGAAGCAAACTTTAGGGAGA 58.998 34.615 0.00 0.00 35.82 3.71
4169 4228 4.803452 AGTGACAAGAAAAGGGGATTGAA 58.197 39.130 0.00 0.00 0.00 2.69
4186 4245 7.015584 GGGGATTGAAGAAACATTTATGCCTAT 59.984 37.037 0.00 0.00 0.00 2.57
4283 4346 6.655003 ACGACAGTCATCATGGAAATTAAACT 59.345 34.615 0.41 0.00 0.00 2.66
4297 4360 7.494625 TGGAAATTAAACTAGATAACCAGCGAG 59.505 37.037 0.00 0.00 0.00 5.03
4320 4383 7.530426 AGCATTAGAACATTTCTCAAAAGGT 57.470 32.000 0.00 0.00 40.88 3.50
4328 4394 7.996644 AGAACATTTCTCAAAAGGTACCTAACA 59.003 33.333 16.67 0.00 38.36 2.41
4435 4501 7.633772 GCAAGAGATCACAACCCTAAGATCTAA 60.634 40.741 0.00 0.00 45.18 2.10
4443 4509 4.022359 ACCCTAAGATCTAACACCCCAT 57.978 45.455 0.00 0.00 0.00 4.00
4577 4643 6.546428 TCCAGGACAGATTAACCTAAAGAG 57.454 41.667 0.00 0.00 32.35 2.85
4611 4681 4.955811 ACTGTCATGAGTGTTAGGTTGA 57.044 40.909 0.00 0.00 0.00 3.18
4718 4788 6.084326 TGGCAACTTCTAAACAGAATTTCC 57.916 37.500 0.00 0.00 37.61 3.13
4720 4790 6.152379 GGCAACTTCTAAACAGAATTTCCTG 58.848 40.000 0.00 0.00 39.93 3.86
4809 4882 7.276658 CGAACCATTATTATCAGTAGCCATCTC 59.723 40.741 0.00 0.00 0.00 2.75
4853 4926 1.298014 CTGGAGAGGGTGCAGTTCC 59.702 63.158 0.00 0.00 39.73 3.62
4894 4967 2.957402 TTGGCTTGTCAAGGACATCT 57.043 45.000 14.40 0.00 42.40 2.90
4917 4990 6.493115 TCTTCACTTGATTTCCCTTTGCATAA 59.507 34.615 0.00 0.00 0.00 1.90
4969 5042 6.487828 AGGGAGATCACATTCATCTTTTTCA 58.512 36.000 0.00 0.00 30.30 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.730420 GTACTGTTGCAGAAAATTAGAGAAAAA 57.270 29.630 2.91 0.00 35.18 1.94
2 3 8.677148 AGTACTGTTGCAGAAAATTAGAGAAA 57.323 30.769 0.00 0.00 35.18 2.52
3 4 8.150945 AGAGTACTGTTGCAGAAAATTAGAGAA 58.849 33.333 0.00 0.00 35.18 2.87
5 6 7.897575 AGAGTACTGTTGCAGAAAATTAGAG 57.102 36.000 0.00 0.00 35.18 2.43
6 7 9.944376 ATAAGAGTACTGTTGCAGAAAATTAGA 57.056 29.630 15.18 0.00 35.18 2.10
9 10 8.850156 ACAATAAGAGTACTGTTGCAGAAAATT 58.150 29.630 15.18 2.67 35.18 1.82
10 11 8.396272 ACAATAAGAGTACTGTTGCAGAAAAT 57.604 30.769 15.18 0.00 35.18 1.82
11 12 7.801716 ACAATAAGAGTACTGTTGCAGAAAA 57.198 32.000 15.18 0.00 35.18 2.29
12 13 8.364894 TCTACAATAAGAGTACTGTTGCAGAAA 58.635 33.333 15.18 0.00 35.18 2.52
13 14 7.892609 TCTACAATAAGAGTACTGTTGCAGAA 58.107 34.615 15.18 0.00 35.18 3.02
14 15 7.462571 TCTACAATAAGAGTACTGTTGCAGA 57.537 36.000 15.18 9.68 35.18 4.26
15 16 7.815068 ACTTCTACAATAAGAGTACTGTTGCAG 59.185 37.037 15.18 7.81 37.52 4.41
16 17 7.667557 ACTTCTACAATAAGAGTACTGTTGCA 58.332 34.615 15.18 0.00 0.00 4.08
17 18 8.436200 CAACTTCTACAATAAGAGTACTGTTGC 58.564 37.037 15.18 0.00 0.00 4.17
18 19 9.477484 ACAACTTCTACAATAAGAGTACTGTTG 57.523 33.333 15.18 12.48 35.92 3.33
31 32 9.314321 CGGATATGAGTTTACAACTTCTACAAT 57.686 33.333 0.00 0.00 43.03 2.71
32 33 8.525316 TCGGATATGAGTTTACAACTTCTACAA 58.475 33.333 0.00 0.00 43.03 2.41
33 34 7.972277 GTCGGATATGAGTTTACAACTTCTACA 59.028 37.037 0.00 0.00 43.03 2.74
34 35 7.972277 TGTCGGATATGAGTTTACAACTTCTAC 59.028 37.037 0.00 0.00 43.03 2.59
35 36 7.972277 GTGTCGGATATGAGTTTACAACTTCTA 59.028 37.037 0.00 0.00 43.03 2.10
36 37 6.812160 GTGTCGGATATGAGTTTACAACTTCT 59.188 38.462 0.00 0.00 43.03 2.85
37 38 6.588756 TGTGTCGGATATGAGTTTACAACTTC 59.411 38.462 0.00 0.00 43.03 3.01
38 39 6.460781 TGTGTCGGATATGAGTTTACAACTT 58.539 36.000 0.00 0.00 43.03 2.66
39 40 6.032956 TGTGTCGGATATGAGTTTACAACT 57.967 37.500 0.00 0.00 46.38 3.16
40 41 6.757010 AGATGTGTCGGATATGAGTTTACAAC 59.243 38.462 0.00 0.00 0.00 3.32
41 42 6.873997 AGATGTGTCGGATATGAGTTTACAA 58.126 36.000 0.00 0.00 0.00 2.41
42 43 6.465439 AGATGTGTCGGATATGAGTTTACA 57.535 37.500 0.00 0.00 0.00 2.41
43 44 9.477484 AATTAGATGTGTCGGATATGAGTTTAC 57.523 33.333 0.00 0.00 0.00 2.01
45 46 8.964476 AAATTAGATGTGTCGGATATGAGTTT 57.036 30.769 0.00 0.00 0.00 2.66
46 47 8.964476 AAAATTAGATGTGTCGGATATGAGTT 57.036 30.769 0.00 0.00 0.00 3.01
47 48 8.424918 AGAAAATTAGATGTGTCGGATATGAGT 58.575 33.333 0.00 0.00 0.00 3.41
48 49 8.706936 CAGAAAATTAGATGTGTCGGATATGAG 58.293 37.037 0.00 0.00 0.00 2.90
49 50 7.171508 GCAGAAAATTAGATGTGTCGGATATGA 59.828 37.037 0.00 0.00 0.00 2.15
50 51 7.041848 TGCAGAAAATTAGATGTGTCGGATATG 60.042 37.037 0.00 0.00 0.00 1.78
51 52 6.992123 TGCAGAAAATTAGATGTGTCGGATAT 59.008 34.615 0.00 0.00 0.00 1.63
52 53 6.345298 TGCAGAAAATTAGATGTGTCGGATA 58.655 36.000 0.00 0.00 0.00 2.59
53 54 5.185454 TGCAGAAAATTAGATGTGTCGGAT 58.815 37.500 0.00 0.00 0.00 4.18
54 55 4.574892 TGCAGAAAATTAGATGTGTCGGA 58.425 39.130 0.00 0.00 0.00 4.55
55 56 4.944962 TGCAGAAAATTAGATGTGTCGG 57.055 40.909 0.00 0.00 0.00 4.79
56 57 5.688823 TGTTGCAGAAAATTAGATGTGTCG 58.311 37.500 0.00 0.00 0.00 4.35
57 58 7.324616 GTCTTGTTGCAGAAAATTAGATGTGTC 59.675 37.037 0.00 0.00 0.00 3.67
58 59 7.141363 GTCTTGTTGCAGAAAATTAGATGTGT 58.859 34.615 0.00 0.00 0.00 3.72
59 60 6.583806 GGTCTTGTTGCAGAAAATTAGATGTG 59.416 38.462 0.00 0.00 0.00 3.21
60 61 6.491403 AGGTCTTGTTGCAGAAAATTAGATGT 59.509 34.615 0.00 0.00 0.00 3.06
61 62 6.917533 AGGTCTTGTTGCAGAAAATTAGATG 58.082 36.000 0.00 0.00 0.00 2.90
62 63 8.680903 CATAGGTCTTGTTGCAGAAAATTAGAT 58.319 33.333 0.00 0.00 0.00 1.98
63 64 7.665559 ACATAGGTCTTGTTGCAGAAAATTAGA 59.334 33.333 0.00 0.00 0.00 2.10
64 65 7.820648 ACATAGGTCTTGTTGCAGAAAATTAG 58.179 34.615 0.00 0.00 0.00 1.73
65 66 7.759489 ACATAGGTCTTGTTGCAGAAAATTA 57.241 32.000 0.00 0.00 0.00 1.40
66 67 6.655078 ACATAGGTCTTGTTGCAGAAAATT 57.345 33.333 0.00 0.00 0.00 1.82
67 68 6.449698 CAACATAGGTCTTGTTGCAGAAAAT 58.550 36.000 3.87 0.00 45.10 1.82
68 69 5.830912 CAACATAGGTCTTGTTGCAGAAAA 58.169 37.500 3.87 0.00 45.10 2.29
69 70 5.437289 CAACATAGGTCTTGTTGCAGAAA 57.563 39.130 3.87 0.00 45.10 2.52
76 77 7.481275 CAATTTTTGCAACATAGGTCTTGTT 57.519 32.000 0.00 0.00 37.79 2.83
92 93 4.084433 CCGGAGATGTTGTTGCAATTTTTG 60.084 41.667 0.59 0.00 0.00 2.44
93 94 4.057432 CCGGAGATGTTGTTGCAATTTTT 58.943 39.130 0.59 0.00 0.00 1.94
94 95 3.069443 ACCGGAGATGTTGTTGCAATTTT 59.931 39.130 9.46 0.00 0.00 1.82
95 96 2.627699 ACCGGAGATGTTGTTGCAATTT 59.372 40.909 9.46 0.00 0.00 1.82
96 97 2.228822 GACCGGAGATGTTGTTGCAATT 59.771 45.455 9.46 0.00 0.00 2.32
97 98 1.812571 GACCGGAGATGTTGTTGCAAT 59.187 47.619 9.46 0.00 0.00 3.56
98 99 1.234821 GACCGGAGATGTTGTTGCAA 58.765 50.000 9.46 0.00 0.00 4.08
99 100 0.948623 CGACCGGAGATGTTGTTGCA 60.949 55.000 9.46 0.00 0.00 4.08
100 101 0.949105 ACGACCGGAGATGTTGTTGC 60.949 55.000 9.46 0.00 0.00 4.17
101 102 0.790207 CACGACCGGAGATGTTGTTG 59.210 55.000 9.46 0.00 0.00 3.33
102 103 0.391597 ACACGACCGGAGATGTTGTT 59.608 50.000 9.46 0.00 0.00 2.83
103 104 0.038526 GACACGACCGGAGATGTTGT 60.039 55.000 9.46 1.62 0.00 3.32
104 105 0.243907 AGACACGACCGGAGATGTTG 59.756 55.000 9.46 0.00 0.00 3.33
105 106 0.526662 GAGACACGACCGGAGATGTT 59.473 55.000 9.46 0.17 0.00 2.71
106 107 1.645704 CGAGACACGACCGGAGATGT 61.646 60.000 9.46 8.91 45.77 3.06
107 108 1.062685 CGAGACACGACCGGAGATG 59.937 63.158 9.46 5.11 45.77 2.90
108 109 2.762234 GCGAGACACGACCGGAGAT 61.762 63.158 9.46 0.00 45.77 2.75
109 110 3.429141 GCGAGACACGACCGGAGA 61.429 66.667 9.46 0.00 45.77 3.71
110 111 3.733960 TGCGAGACACGACCGGAG 61.734 66.667 9.46 3.87 45.77 4.63
111 112 4.034258 GTGCGAGACACGACCGGA 62.034 66.667 9.46 0.00 45.77 5.14
119 120 0.875908 GACTGTGCAAGTGCGAGACA 60.876 55.000 8.65 2.71 45.83 3.41
120 121 1.856012 GACTGTGCAAGTGCGAGAC 59.144 57.895 8.65 0.00 45.83 3.36
121 122 1.661509 CGACTGTGCAAGTGCGAGA 60.662 57.895 8.65 0.00 45.83 4.04
122 123 1.880601 GACGACTGTGCAAGTGCGAG 61.881 60.000 17.92 0.00 45.83 5.03
123 124 1.949133 GACGACTGTGCAAGTGCGA 60.949 57.895 17.92 0.00 45.83 5.10
124 125 2.546321 GACGACTGTGCAAGTGCG 59.454 61.111 6.31 10.74 45.83 5.34
125 126 2.147204 GACGACGACTGTGCAAGTGC 62.147 60.000 0.00 0.00 40.07 4.40
126 127 1.548973 GGACGACGACTGTGCAAGTG 61.549 60.000 0.00 2.99 40.07 3.16
127 128 1.299926 GGACGACGACTGTGCAAGT 60.300 57.895 0.00 0.00 43.85 3.16
128 129 3.538841 GGACGACGACTGTGCAAG 58.461 61.111 0.00 0.00 0.00 4.01
139 140 4.760047 ATGGTGGCAGCGGACGAC 62.760 66.667 12.58 0.00 0.00 4.34
140 141 3.950794 GAATGGTGGCAGCGGACGA 62.951 63.158 12.58 0.00 0.00 4.20
141 142 2.572095 TAGAATGGTGGCAGCGGACG 62.572 60.000 12.58 0.00 0.00 4.79
142 143 1.090052 GTAGAATGGTGGCAGCGGAC 61.090 60.000 12.58 5.53 0.00 4.79
143 144 1.220749 GTAGAATGGTGGCAGCGGA 59.779 57.895 12.58 0.00 0.00 5.54
144 145 0.676466 TTGTAGAATGGTGGCAGCGG 60.676 55.000 12.58 0.00 0.00 5.52
145 146 0.447801 GTTGTAGAATGGTGGCAGCG 59.552 55.000 12.58 0.00 0.00 5.18
146 147 1.200020 GTGTTGTAGAATGGTGGCAGC 59.800 52.381 10.30 10.30 0.00 5.25
147 148 1.812571 GGTGTTGTAGAATGGTGGCAG 59.187 52.381 0.00 0.00 0.00 4.85
148 149 1.143889 TGGTGTTGTAGAATGGTGGCA 59.856 47.619 0.00 0.00 0.00 4.92
149 150 1.539827 GTGGTGTTGTAGAATGGTGGC 59.460 52.381 0.00 0.00 0.00 5.01
150 151 2.159382 GGTGGTGTTGTAGAATGGTGG 58.841 52.381 0.00 0.00 0.00 4.61
151 152 1.804151 CGGTGGTGTTGTAGAATGGTG 59.196 52.381 0.00 0.00 0.00 4.17
152 153 1.880646 GCGGTGGTGTTGTAGAATGGT 60.881 52.381 0.00 0.00 0.00 3.55
153 154 0.802494 GCGGTGGTGTTGTAGAATGG 59.198 55.000 0.00 0.00 0.00 3.16
154 155 1.464608 CAGCGGTGGTGTTGTAGAATG 59.535 52.381 6.74 0.00 0.00 2.67
155 156 1.071699 ACAGCGGTGGTGTTGTAGAAT 59.928 47.619 20.20 0.00 41.72 2.40
156 157 0.466543 ACAGCGGTGGTGTTGTAGAA 59.533 50.000 20.20 0.00 41.72 2.10
157 158 2.129620 ACAGCGGTGGTGTTGTAGA 58.870 52.632 20.20 0.00 41.72 2.59
158 159 4.771127 ACAGCGGTGGTGTTGTAG 57.229 55.556 20.20 0.00 41.72 2.74
163 164 2.901840 CTGCAACAGCGGTGGTGT 60.902 61.111 31.11 8.16 44.05 4.16
164 165 2.591429 TCTGCAACAGCGGTGGTG 60.591 61.111 27.69 27.69 45.11 4.17
165 166 2.116983 ATCTCTGCAACAGCGGTGGT 62.117 55.000 20.20 10.14 36.07 4.16
166 167 1.376424 ATCTCTGCAACAGCGGTGG 60.376 57.895 20.20 2.78 36.07 4.61
167 168 0.671472 TCATCTCTGCAACAGCGGTG 60.671 55.000 14.13 14.13 36.07 4.94
168 169 0.390866 CTCATCTCTGCAACAGCGGT 60.391 55.000 0.00 0.00 36.07 5.68
169 170 0.108472 TCTCATCTCTGCAACAGCGG 60.108 55.000 0.00 0.00 35.95 5.52
170 171 1.593469 CATCTCATCTCTGCAACAGCG 59.407 52.381 0.00 0.00 0.00 5.18
171 172 2.867368 CTCATCTCATCTCTGCAACAGC 59.133 50.000 0.00 0.00 0.00 4.40
172 173 4.388378 TCTCATCTCATCTCTGCAACAG 57.612 45.455 0.00 0.00 0.00 3.16
173 174 4.813750 TTCTCATCTCATCTCTGCAACA 57.186 40.909 0.00 0.00 0.00 3.33
174 175 5.417811 TCTTTCTCATCTCATCTCTGCAAC 58.582 41.667 0.00 0.00 0.00 4.17
175 176 5.421374 TCTCTTTCTCATCTCATCTCTGCAA 59.579 40.000 0.00 0.00 0.00 4.08
176 177 4.954826 TCTCTTTCTCATCTCATCTCTGCA 59.045 41.667 0.00 0.00 0.00 4.41
177 178 5.300034 TCTCTCTTTCTCATCTCATCTCTGC 59.700 44.000 0.00 0.00 0.00 4.26
178 179 6.947644 TCTCTCTTTCTCATCTCATCTCTG 57.052 41.667 0.00 0.00 0.00 3.35
179 180 7.013942 CACATCTCTCTTTCTCATCTCATCTCT 59.986 40.741 0.00 0.00 0.00 3.10
180 181 7.143340 CACATCTCTCTTTCTCATCTCATCTC 58.857 42.308 0.00 0.00 0.00 2.75
181 182 6.461927 GCACATCTCTCTTTCTCATCTCATCT 60.462 42.308 0.00 0.00 0.00 2.90
182 183 5.693104 GCACATCTCTCTTTCTCATCTCATC 59.307 44.000 0.00 0.00 0.00 2.92
183 184 5.364446 AGCACATCTCTCTTTCTCATCTCAT 59.636 40.000 0.00 0.00 0.00 2.90
184 185 4.710865 AGCACATCTCTCTTTCTCATCTCA 59.289 41.667 0.00 0.00 0.00 3.27
185 186 5.163530 TGAGCACATCTCTCTTTCTCATCTC 60.164 44.000 0.00 0.00 42.38 2.75
186 187 4.710865 TGAGCACATCTCTCTTTCTCATCT 59.289 41.667 0.00 0.00 42.38 2.90
187 188 5.008619 TGAGCACATCTCTCTTTCTCATC 57.991 43.478 0.00 0.00 42.38 2.92
188 189 5.104859 ACATGAGCACATCTCTCTTTCTCAT 60.105 40.000 0.00 0.00 42.38 2.90
189 190 4.222366 ACATGAGCACATCTCTCTTTCTCA 59.778 41.667 0.00 0.00 42.38 3.27
190 191 4.757594 ACATGAGCACATCTCTCTTTCTC 58.242 43.478 0.00 0.00 42.38 2.87
191 192 4.822685 ACATGAGCACATCTCTCTTTCT 57.177 40.909 0.00 0.00 42.38 2.52
192 193 5.748152 GTCTACATGAGCACATCTCTCTTTC 59.252 44.000 0.00 0.00 42.38 2.62
193 194 5.395103 GGTCTACATGAGCACATCTCTCTTT 60.395 44.000 0.00 0.00 42.38 2.52
194 195 4.099266 GGTCTACATGAGCACATCTCTCTT 59.901 45.833 0.00 0.00 42.38 2.85
195 196 3.636300 GGTCTACATGAGCACATCTCTCT 59.364 47.826 0.00 0.00 42.38 3.10
196 197 3.382865 TGGTCTACATGAGCACATCTCTC 59.617 47.826 0.00 0.00 46.77 3.20
197 198 3.369175 TGGTCTACATGAGCACATCTCT 58.631 45.455 0.00 0.00 46.77 3.10
198 199 3.808466 TGGTCTACATGAGCACATCTC 57.192 47.619 0.00 0.00 46.77 2.75
205 206 1.726791 CAACACGTGGTCTACATGAGC 59.273 52.381 21.57 0.00 43.03 4.26
206 207 3.245797 CTCAACACGTGGTCTACATGAG 58.754 50.000 21.57 11.16 39.46 2.90
207 208 2.609491 GCTCAACACGTGGTCTACATGA 60.609 50.000 21.57 4.59 39.46 3.07
208 209 1.726791 GCTCAACACGTGGTCTACATG 59.273 52.381 21.57 0.00 41.98 3.21
209 210 1.343142 TGCTCAACACGTGGTCTACAT 59.657 47.619 21.57 0.00 0.00 2.29
210 211 0.747852 TGCTCAACACGTGGTCTACA 59.252 50.000 21.57 7.71 0.00 2.74
211 212 1.792949 CTTGCTCAACACGTGGTCTAC 59.207 52.381 21.57 4.85 0.00 2.59
212 213 1.270094 CCTTGCTCAACACGTGGTCTA 60.270 52.381 21.57 2.39 0.00 2.59
213 214 0.532862 CCTTGCTCAACACGTGGTCT 60.533 55.000 21.57 0.27 0.00 3.85
214 215 1.507141 CCCTTGCTCAACACGTGGTC 61.507 60.000 21.57 1.57 0.00 4.02
215 216 1.525995 CCCTTGCTCAACACGTGGT 60.526 57.895 21.57 11.47 0.00 4.16
216 217 1.227823 TCCCTTGCTCAACACGTGG 60.228 57.895 21.57 2.57 0.00 4.94
217 218 1.230635 CCTCCCTTGCTCAACACGTG 61.231 60.000 15.48 15.48 0.00 4.49
218 219 1.071471 CCTCCCTTGCTCAACACGT 59.929 57.895 0.00 0.00 0.00 4.49
219 220 1.071471 ACCTCCCTTGCTCAACACG 59.929 57.895 0.00 0.00 0.00 4.49
220 221 0.890996 CCACCTCCCTTGCTCAACAC 60.891 60.000 0.00 0.00 0.00 3.32
221 222 1.455849 CCACCTCCCTTGCTCAACA 59.544 57.895 0.00 0.00 0.00 3.33
222 223 1.973812 GCCACCTCCCTTGCTCAAC 60.974 63.158 0.00 0.00 0.00 3.18
223 224 2.436109 GCCACCTCCCTTGCTCAA 59.564 61.111 0.00 0.00 0.00 3.02
224 225 4.020617 CGCCACCTCCCTTGCTCA 62.021 66.667 0.00 0.00 0.00 4.26
225 226 4.785453 CCGCCACCTCCCTTGCTC 62.785 72.222 0.00 0.00 0.00 4.26
228 229 4.760047 CGTCCGCCACCTCCCTTG 62.760 72.222 0.00 0.00 0.00 3.61
245 246 2.258897 GCCGATCTAGCGTAGGGC 59.741 66.667 0.00 0.00 44.05 5.19
246 247 2.963371 GGCCGATCTAGCGTAGGG 59.037 66.667 0.00 0.00 0.00 3.53
247 248 1.964891 TCGGCCGATCTAGCGTAGG 60.965 63.158 27.28 0.00 0.00 3.18
248 249 1.207085 GTCGGCCGATCTAGCGTAG 59.793 63.158 33.58 0.00 0.00 3.51
249 250 1.227764 AGTCGGCCGATCTAGCGTA 60.228 57.895 33.58 1.12 0.00 4.42
250 251 2.516460 AGTCGGCCGATCTAGCGT 60.516 61.111 33.58 7.28 0.00 5.07
251 252 1.857318 ATCAGTCGGCCGATCTAGCG 61.857 60.000 33.58 17.04 0.00 4.26
252 253 0.315568 AATCAGTCGGCCGATCTAGC 59.684 55.000 33.58 18.33 0.00 3.42
253 254 3.917329 TTAATCAGTCGGCCGATCTAG 57.083 47.619 33.58 20.54 0.00 2.43
254 255 4.659111 TTTTAATCAGTCGGCCGATCTA 57.341 40.909 33.58 19.53 0.00 1.98
255 256 3.536956 TTTTAATCAGTCGGCCGATCT 57.463 42.857 33.58 25.62 0.00 2.75
256 257 3.807622 TGATTTTAATCAGTCGGCCGATC 59.192 43.478 33.58 23.78 40.32 3.69
257 258 3.804036 TGATTTTAATCAGTCGGCCGAT 58.196 40.909 33.58 17.92 40.32 4.18
258 259 3.254470 TGATTTTAATCAGTCGGCCGA 57.746 42.857 27.28 27.28 40.32 5.54
299 300 9.435570 ACAGAGGGAGTATATAACTAACAACAT 57.564 33.333 0.00 0.00 39.07 2.71
300 301 8.834004 ACAGAGGGAGTATATAACTAACAACA 57.166 34.615 0.00 0.00 39.07 3.33
301 302 9.747293 GAACAGAGGGAGTATATAACTAACAAC 57.253 37.037 0.00 0.00 39.07 3.32
302 303 9.483489 TGAACAGAGGGAGTATATAACTAACAA 57.517 33.333 0.00 0.00 39.07 2.83
303 304 9.656323 ATGAACAGAGGGAGTATATAACTAACA 57.344 33.333 0.00 0.00 39.07 2.41
304 305 9.915629 CATGAACAGAGGGAGTATATAACTAAC 57.084 37.037 0.00 0.00 39.07 2.34
305 306 9.877222 TCATGAACAGAGGGAGTATATAACTAA 57.123 33.333 0.00 0.00 39.07 2.24
306 307 9.877222 TTCATGAACAGAGGGAGTATATAACTA 57.123 33.333 3.38 0.00 39.07 2.24
307 308 8.783660 TTCATGAACAGAGGGAGTATATAACT 57.216 34.615 3.38 0.00 42.80 2.24
311 312 9.386122 ACTTATTCATGAACAGAGGGAGTATAT 57.614 33.333 19.04 0.00 0.00 0.86
312 313 8.783660 ACTTATTCATGAACAGAGGGAGTATA 57.216 34.615 19.04 0.00 0.00 1.47
313 314 7.682787 ACTTATTCATGAACAGAGGGAGTAT 57.317 36.000 19.04 0.29 0.00 2.12
314 315 7.839705 AGTACTTATTCATGAACAGAGGGAGTA 59.160 37.037 19.04 7.16 0.00 2.59
315 316 6.670027 AGTACTTATTCATGAACAGAGGGAGT 59.330 38.462 19.04 8.02 0.00 3.85
316 317 7.118496 AGTACTTATTCATGAACAGAGGGAG 57.882 40.000 19.04 2.78 0.00 4.30
317 318 7.400339 AGAAGTACTTATTCATGAACAGAGGGA 59.600 37.037 19.04 1.17 0.00 4.20
318 319 7.560368 AGAAGTACTTATTCATGAACAGAGGG 58.440 38.462 19.04 7.12 0.00 4.30
319 320 9.522804 GTAGAAGTACTTATTCATGAACAGAGG 57.477 37.037 19.04 8.40 0.00 3.69
320 321 9.522804 GGTAGAAGTACTTATTCATGAACAGAG 57.477 37.037 19.04 14.99 0.00 3.35
321 322 9.256228 AGGTAGAAGTACTTATTCATGAACAGA 57.744 33.333 19.04 3.49 0.00 3.41
322 323 9.877178 AAGGTAGAAGTACTTATTCATGAACAG 57.123 33.333 11.07 12.19 0.00 3.16
329 330 9.841295 AACACAAAAGGTAGAAGTACTTATTCA 57.159 29.630 8.42 0.00 0.00 2.57
334 335 9.322773 GACTTAACACAAAAGGTAGAAGTACTT 57.677 33.333 8.13 8.13 29.64 2.24
335 336 8.480501 TGACTTAACACAAAAGGTAGAAGTACT 58.519 33.333 0.00 0.00 29.64 2.73
336 337 8.652810 TGACTTAACACAAAAGGTAGAAGTAC 57.347 34.615 0.00 0.00 29.64 2.73
337 338 9.669887 TTTGACTTAACACAAAAGGTAGAAGTA 57.330 29.630 0.00 0.00 33.90 2.24
338 339 8.570068 TTTGACTTAACACAAAAGGTAGAAGT 57.430 30.769 0.00 0.00 33.90 3.01
454 455 9.944376 ACAACATGACACTAAATTAGTATCACT 57.056 29.630 15.36 2.58 44.14 3.41
496 497 9.494271 ACGAATAAATGTATATCTGCATCAACT 57.506 29.630 0.00 0.00 0.00 3.16
497 498 9.533983 CACGAATAAATGTATATCTGCATCAAC 57.466 33.333 0.00 0.00 0.00 3.18
498 499 8.720562 CCACGAATAAATGTATATCTGCATCAA 58.279 33.333 0.00 0.00 0.00 2.57
499 500 8.093927 TCCACGAATAAATGTATATCTGCATCA 58.906 33.333 0.00 0.00 0.00 3.07
500 501 8.383619 GTCCACGAATAAATGTATATCTGCATC 58.616 37.037 0.00 0.00 0.00 3.91
501 502 7.063426 CGTCCACGAATAAATGTATATCTGCAT 59.937 37.037 0.00 0.00 43.02 3.96
502 503 6.364976 CGTCCACGAATAAATGTATATCTGCA 59.635 38.462 0.00 0.00 43.02 4.41
503 504 6.183360 CCGTCCACGAATAAATGTATATCTGC 60.183 42.308 0.00 0.00 43.02 4.26
504 505 7.088272 TCCGTCCACGAATAAATGTATATCTG 58.912 38.462 0.00 0.00 43.02 2.90
505 506 7.223260 TCCGTCCACGAATAAATGTATATCT 57.777 36.000 0.00 0.00 43.02 1.98
506 507 7.010183 CCATCCGTCCACGAATAAATGTATATC 59.990 40.741 0.00 0.00 43.02 1.63
507 508 6.816640 CCATCCGTCCACGAATAAATGTATAT 59.183 38.462 0.00 0.00 43.02 0.86
508 509 6.015265 TCCATCCGTCCACGAATAAATGTATA 60.015 38.462 0.00 0.00 43.02 1.47
509 510 4.994852 CCATCCGTCCACGAATAAATGTAT 59.005 41.667 0.00 0.00 43.02 2.29
510 511 4.099727 TCCATCCGTCCACGAATAAATGTA 59.900 41.667 0.00 0.00 43.02 2.29
511 512 3.118555 TCCATCCGTCCACGAATAAATGT 60.119 43.478 0.00 0.00 43.02 2.71
512 513 3.462982 TCCATCCGTCCACGAATAAATG 58.537 45.455 0.00 0.00 43.02 2.32
513 514 3.134081 ACTCCATCCGTCCACGAATAAAT 59.866 43.478 0.00 0.00 43.02 1.40
514 515 2.498481 ACTCCATCCGTCCACGAATAAA 59.502 45.455 0.00 0.00 43.02 1.40
515 516 2.104967 ACTCCATCCGTCCACGAATAA 58.895 47.619 0.00 0.00 43.02 1.40
516 517 1.771565 ACTCCATCCGTCCACGAATA 58.228 50.000 0.00 0.00 43.02 1.75
517 518 1.771565 TACTCCATCCGTCCACGAAT 58.228 50.000 0.00 0.00 43.02 3.34
518 519 1.548081 TTACTCCATCCGTCCACGAA 58.452 50.000 0.00 0.00 43.02 3.85
519 520 1.548081 TTTACTCCATCCGTCCACGA 58.452 50.000 0.00 0.00 43.02 4.35
520 521 2.596904 ATTTACTCCATCCGTCCACG 57.403 50.000 0.00 0.00 39.44 4.94
521 522 4.667519 ACTATTTACTCCATCCGTCCAC 57.332 45.455 0.00 0.00 0.00 4.02
522 523 6.795144 TTAACTATTTACTCCATCCGTCCA 57.205 37.500 0.00 0.00 0.00 4.02
523 524 8.672823 ATTTTAACTATTTACTCCATCCGTCC 57.327 34.615 0.00 0.00 0.00 4.79
544 545 8.630037 ACTCCTTCGTACTTTGAATCAAATTTT 58.370 29.630 9.02 0.00 32.70 1.82
545 546 8.166422 ACTCCTTCGTACTTTGAATCAAATTT 57.834 30.769 9.02 2.39 32.70 1.82
546 547 7.661847 AGACTCCTTCGTACTTTGAATCAAATT 59.338 33.333 9.02 6.35 32.70 1.82
547 548 7.162082 AGACTCCTTCGTACTTTGAATCAAAT 58.838 34.615 9.02 2.91 32.70 2.32
548 549 6.522054 AGACTCCTTCGTACTTTGAATCAAA 58.478 36.000 8.25 8.25 0.00 2.69
549 550 6.097915 AGACTCCTTCGTACTTTGAATCAA 57.902 37.500 0.00 0.00 0.00 2.57
550 551 5.723672 AGACTCCTTCGTACTTTGAATCA 57.276 39.130 0.00 0.00 0.00 2.57
551 552 9.798994 TTATTAGACTCCTTCGTACTTTGAATC 57.201 33.333 0.00 0.00 0.00 2.52
553 554 9.415544 GTTTATTAGACTCCTTCGTACTTTGAA 57.584 33.333 0.00 0.00 0.00 2.69
554 555 8.031277 GGTTTATTAGACTCCTTCGTACTTTGA 58.969 37.037 0.00 0.00 0.00 2.69
555 556 7.277319 GGGTTTATTAGACTCCTTCGTACTTTG 59.723 40.741 0.00 0.00 0.00 2.77
556 557 7.326454 GGGTTTATTAGACTCCTTCGTACTTT 58.674 38.462 0.00 0.00 0.00 2.66
557 558 6.405176 CGGGTTTATTAGACTCCTTCGTACTT 60.405 42.308 0.00 0.00 0.00 2.24
558 559 5.067023 CGGGTTTATTAGACTCCTTCGTACT 59.933 44.000 0.00 0.00 0.00 2.73
559 560 5.277047 CGGGTTTATTAGACTCCTTCGTAC 58.723 45.833 0.00 0.00 0.00 3.67
560 561 4.339247 CCGGGTTTATTAGACTCCTTCGTA 59.661 45.833 0.00 0.00 0.00 3.43
561 562 3.131755 CCGGGTTTATTAGACTCCTTCGT 59.868 47.826 0.00 0.00 0.00 3.85
562 563 3.382546 TCCGGGTTTATTAGACTCCTTCG 59.617 47.826 0.00 0.00 0.00 3.79
563 564 4.648307 TCTCCGGGTTTATTAGACTCCTTC 59.352 45.833 0.00 0.00 0.00 3.46
564 565 4.405036 GTCTCCGGGTTTATTAGACTCCTT 59.595 45.833 0.00 0.00 34.95 3.36
565 566 3.959449 GTCTCCGGGTTTATTAGACTCCT 59.041 47.826 0.00 0.00 34.95 3.69
566 567 3.243334 CGTCTCCGGGTTTATTAGACTCC 60.243 52.174 13.46 0.00 35.51 3.85
567 568 3.962423 CGTCTCCGGGTTTATTAGACTC 58.038 50.000 13.46 0.00 35.51 3.36
581 582 0.387622 TTGTACTTTCGCCGTCTCCG 60.388 55.000 0.00 0.00 0.00 4.63
582 583 2.005971 ATTGTACTTTCGCCGTCTCC 57.994 50.000 0.00 0.00 0.00 3.71
583 584 6.817270 TTTATATTGTACTTTCGCCGTCTC 57.183 37.500 0.00 0.00 0.00 3.36
584 585 7.599630 TTTTTATATTGTACTTTCGCCGTCT 57.400 32.000 0.00 0.00 0.00 4.18
605 606 7.396540 AAATCTCAGAGGAATACGCATTTTT 57.603 32.000 0.00 0.00 0.00 1.94
606 607 7.396540 AAAATCTCAGAGGAATACGCATTTT 57.603 32.000 0.00 0.00 0.00 1.82
607 608 7.227512 CCTAAAATCTCAGAGGAATACGCATTT 59.772 37.037 0.00 0.00 0.00 2.32
608 609 6.708054 CCTAAAATCTCAGAGGAATACGCATT 59.292 38.462 0.00 0.00 0.00 3.56
609 610 6.183361 ACCTAAAATCTCAGAGGAATACGCAT 60.183 38.462 0.00 0.00 33.04 4.73
610 611 5.128827 ACCTAAAATCTCAGAGGAATACGCA 59.871 40.000 0.00 0.00 33.04 5.24
611 612 5.602628 ACCTAAAATCTCAGAGGAATACGC 58.397 41.667 0.00 0.00 33.04 4.42
612 613 7.942990 ACTACCTAAAATCTCAGAGGAATACG 58.057 38.462 0.00 0.00 33.04 3.06
615 616 9.454859 CAAAACTACCTAAAATCTCAGAGGAAT 57.545 33.333 0.00 0.00 33.04 3.01
616 617 8.437575 ACAAAACTACCTAAAATCTCAGAGGAA 58.562 33.333 0.00 0.00 33.04 3.36
617 618 7.974504 ACAAAACTACCTAAAATCTCAGAGGA 58.025 34.615 0.00 0.00 33.04 3.71
618 619 9.720769 TTACAAAACTACCTAAAATCTCAGAGG 57.279 33.333 0.00 0.00 35.05 3.69
758 761 3.480133 GGGGATCCCAGGACGGTG 61.480 72.222 32.07 0.00 44.65 4.94
864 882 3.636231 CAGAACGGTGGGGGAGCA 61.636 66.667 0.00 0.00 0.00 4.26
868 886 1.984066 TTTTTACAGAACGGTGGGGG 58.016 50.000 0.00 0.00 0.00 5.40
950 968 1.025041 GGCCCTTTTATTCTGCTCGG 58.975 55.000 0.00 0.00 0.00 4.63
954 972 1.852633 AGTGGGCCCTTTTATTCTGC 58.147 50.000 25.70 0.14 0.00 4.26
987 1005 2.153547 AAAATGCCGGCGGTTGGAAG 62.154 55.000 28.82 0.00 0.00 3.46
988 1006 0.894184 TAAAATGCCGGCGGTTGGAA 60.894 50.000 28.82 8.80 0.00 3.53
989 1007 1.303398 TAAAATGCCGGCGGTTGGA 60.303 52.632 28.82 9.70 0.00 3.53
1017 1035 2.365237 AGGAAGGAGGGGTACGCC 60.365 66.667 20.94 20.94 44.92 5.68
1022 1040 2.075278 AAAGGGGAGGAAGGAGGGGT 62.075 60.000 0.00 0.00 0.00 4.95
1028 1046 2.998949 CGGGAAAGGGGAGGAAGG 59.001 66.667 0.00 0.00 0.00 3.46
1029 1047 2.272471 GCGGGAAAGGGGAGGAAG 59.728 66.667 0.00 0.00 0.00 3.46
1030 1048 3.335729 GGCGGGAAAGGGGAGGAA 61.336 66.667 0.00 0.00 0.00 3.36
1033 1051 3.798511 GAGGGCGGGAAAGGGGAG 61.799 72.222 0.00 0.00 0.00 4.30
1034 1052 3.962530 ATGAGGGCGGGAAAGGGGA 62.963 63.158 0.00 0.00 0.00 4.81
1035 1053 3.420482 ATGAGGGCGGGAAAGGGG 61.420 66.667 0.00 0.00 0.00 4.79
1036 1054 2.124151 CATGAGGGCGGGAAAGGG 60.124 66.667 0.00 0.00 0.00 3.95
1037 1055 2.124151 CCATGAGGGCGGGAAAGG 60.124 66.667 0.00 0.00 0.00 3.11
1113 1131 2.978824 GGCCTGCTTAGTGACGGA 59.021 61.111 0.00 0.00 0.00 4.69
1145 1163 2.879233 GCCAGGTGGTTCTCCGACA 61.879 63.158 0.00 0.00 37.57 4.35
1266 1284 3.844090 GGGGTCGAGGCAGAGAGC 61.844 72.222 0.00 0.00 44.65 4.09
1471 1489 0.880278 CCGTACATGGCCATCTTCCG 60.880 60.000 17.61 15.17 0.00 4.30
1600 1618 0.955428 TCCGCAAGTCATGGAAGCAC 60.955 55.000 0.00 0.00 0.00 4.40
1602 1620 1.796796 GTCCGCAAGTCATGGAAGC 59.203 57.895 0.00 0.00 32.60 3.86
1632 1650 3.053917 ACGGGCCATATGGAAAAGTTACT 60.054 43.478 26.47 0.00 37.39 2.24
1633 1651 3.284617 ACGGGCCATATGGAAAAGTTAC 58.715 45.455 26.47 4.56 37.39 2.50
1634 1652 3.655615 ACGGGCCATATGGAAAAGTTA 57.344 42.857 26.47 0.00 37.39 2.24
1675 1693 5.131809 AGCTAAATCAGGATACCAAAGCTCT 59.868 40.000 0.00 0.00 32.59 4.09
1978 1998 7.334671 GGAGGTTTCAGATTTTCAGTAGGTTAG 59.665 40.741 0.00 0.00 0.00 2.34
1979 1999 7.017254 AGGAGGTTTCAGATTTTCAGTAGGTTA 59.983 37.037 0.00 0.00 0.00 2.85
1981 2001 5.310857 AGGAGGTTTCAGATTTTCAGTAGGT 59.689 40.000 0.00 0.00 0.00 3.08
1982 2002 5.645497 CAGGAGGTTTCAGATTTTCAGTAGG 59.355 44.000 0.00 0.00 0.00 3.18
1983 2003 6.234177 ACAGGAGGTTTCAGATTTTCAGTAG 58.766 40.000 0.00 0.00 0.00 2.57
1984 2004 6.043243 AGACAGGAGGTTTCAGATTTTCAGTA 59.957 38.462 0.00 0.00 0.00 2.74
1985 2005 5.053978 ACAGGAGGTTTCAGATTTTCAGT 57.946 39.130 0.00 0.00 0.00 3.41
1986 2006 5.180868 CAGACAGGAGGTTTCAGATTTTCAG 59.819 44.000 0.00 0.00 0.00 3.02
1987 2007 5.065914 CAGACAGGAGGTTTCAGATTTTCA 58.934 41.667 0.00 0.00 0.00 2.69
1988 2008 4.457257 CCAGACAGGAGGTTTCAGATTTTC 59.543 45.833 0.00 0.00 41.22 2.29
1989 2009 4.104738 TCCAGACAGGAGGTTTCAGATTTT 59.895 41.667 0.00 0.00 43.07 1.82
1990 2010 3.652869 TCCAGACAGGAGGTTTCAGATTT 59.347 43.478 0.00 0.00 43.07 2.17
1991 2011 3.251484 TCCAGACAGGAGGTTTCAGATT 58.749 45.455 0.00 0.00 43.07 2.40
1992 2012 2.907892 TCCAGACAGGAGGTTTCAGAT 58.092 47.619 0.00 0.00 43.07 2.90
1993 2013 2.398754 TCCAGACAGGAGGTTTCAGA 57.601 50.000 0.00 0.00 43.07 3.27
2180 2200 0.175531 AAACACAAACCTGCCAGTGC 59.824 50.000 0.00 0.00 35.47 4.40
2181 2201 1.204467 ACAAACACAAACCTGCCAGTG 59.796 47.619 0.00 0.00 37.95 3.66
2182 2202 1.204467 CACAAACACAAACCTGCCAGT 59.796 47.619 0.00 0.00 0.00 4.00
2185 2205 0.809636 GGCACAAACACAAACCTGCC 60.810 55.000 0.00 0.00 37.62 4.85
2434 2456 2.607187 GAAAAGCGGAACATCTCTCGA 58.393 47.619 0.00 0.00 0.00 4.04
2605 2627 2.221055 CGCGTCTTGCTCTACAACTTTT 59.779 45.455 0.00 0.00 43.27 2.27
2612 2634 0.595310 GGATCCGCGTCTTGCTCTAC 60.595 60.000 4.92 0.00 43.27 2.59
2817 2839 8.749841 TGTTTTTGGAATAAACGAACATATGG 57.250 30.769 7.80 0.00 38.11 2.74
3042 3088 1.133025 GAATCATTTGGGGTGCTCACG 59.867 52.381 0.00 0.00 0.00 4.35
3492 3545 1.146041 AACGGTCTTGCTGAGCACA 59.854 52.632 6.64 0.00 42.88 4.57
3521 3574 6.964741 TGTAACTGTTGACTAACGTTTTCA 57.035 33.333 5.91 7.18 39.71 2.69
3747 3800 2.097825 CCCCAAAGATCAAGCTCCAAG 58.902 52.381 0.00 0.00 0.00 3.61
3841 3894 4.080582 CCCAACATCCTACATACAGTCCAA 60.081 45.833 0.00 0.00 0.00 3.53
3895 3948 1.227497 GAGAGGGATGCTGGCTTCG 60.227 63.158 3.10 0.00 0.00 3.79
3908 3961 0.621571 TTCACATGGGGAGGGAGAGG 60.622 60.000 0.00 0.00 0.00 3.69
3909 3962 0.835941 CTTCACATGGGGAGGGAGAG 59.164 60.000 0.00 0.00 0.00 3.20
3910 3963 0.119155 ACTTCACATGGGGAGGGAGA 59.881 55.000 8.49 0.00 0.00 3.71
3911 3964 0.254178 CACTTCACATGGGGAGGGAG 59.746 60.000 8.49 0.00 0.00 4.30
3912 3965 0.178876 TCACTTCACATGGGGAGGGA 60.179 55.000 3.24 3.24 0.00 4.20
3913 3966 0.921896 ATCACTTCACATGGGGAGGG 59.078 55.000 8.49 2.83 0.00 4.30
3914 3967 3.497405 CCATATCACTTCACATGGGGAGG 60.497 52.174 8.49 2.71 35.33 4.30
3915 3968 3.748083 CCATATCACTTCACATGGGGAG 58.252 50.000 0.11 0.11 35.33 4.30
3916 3969 2.158623 GCCATATCACTTCACATGGGGA 60.159 50.000 0.00 0.00 38.70 4.81
3917 3970 2.158564 AGCCATATCACTTCACATGGGG 60.159 50.000 0.00 0.00 38.70 4.96
3918 3971 2.882761 CAGCCATATCACTTCACATGGG 59.117 50.000 0.00 0.00 38.70 4.00
3919 3972 3.314357 CACAGCCATATCACTTCACATGG 59.686 47.826 0.00 0.00 40.80 3.66
3920 3973 3.242969 GCACAGCCATATCACTTCACATG 60.243 47.826 0.00 0.00 0.00 3.21
3921 3974 2.947652 GCACAGCCATATCACTTCACAT 59.052 45.455 0.00 0.00 0.00 3.21
3922 3975 2.290197 TGCACAGCCATATCACTTCACA 60.290 45.455 0.00 0.00 0.00 3.58
3923 3976 2.358957 TGCACAGCCATATCACTTCAC 58.641 47.619 0.00 0.00 0.00 3.18
3924 3977 2.785540 TGCACAGCCATATCACTTCA 57.214 45.000 0.00 0.00 0.00 3.02
3925 3978 4.758674 ACATATGCACAGCCATATCACTTC 59.241 41.667 1.58 0.00 36.52 3.01
3926 3979 4.722220 ACATATGCACAGCCATATCACTT 58.278 39.130 1.58 0.00 36.52 3.16
3927 3980 4.362470 ACATATGCACAGCCATATCACT 57.638 40.909 1.58 0.00 36.52 3.41
3928 3981 4.996758 TGTACATATGCACAGCCATATCAC 59.003 41.667 4.57 0.00 36.52 3.06
3929 3982 5.226194 TGTACATATGCACAGCCATATCA 57.774 39.130 4.57 0.00 36.52 2.15
3930 3983 6.036844 CAGATGTACATATGCACAGCCATATC 59.963 42.308 18.44 8.43 36.52 1.63
3953 4006 8.147058 AGATATCAAGTGGTAATACAAGAGCAG 58.853 37.037 5.32 0.00 0.00 4.24
4037 4093 4.985538 TTCCACTTTACGCCAAGAAAAA 57.014 36.364 1.32 0.00 0.00 1.94
4110 4168 0.667792 GCTTTCAGAGCGACCGTTCT 60.668 55.000 2.97 2.97 42.46 3.01
4111 4169 1.782181 GCTTTCAGAGCGACCGTTC 59.218 57.895 0.00 0.00 42.46 3.95
4112 4170 3.952811 GCTTTCAGAGCGACCGTT 58.047 55.556 0.00 0.00 42.46 4.44
4186 4245 6.569127 TGGTGCCAAAAGGAAGTATATCTA 57.431 37.500 0.00 0.00 0.00 1.98
4198 4257 2.353889 CTCTGATCGATGGTGCCAAAAG 59.646 50.000 0.54 0.00 0.00 2.27
4283 4346 5.068591 TGTTCTAATGCTCGCTGGTTATCTA 59.931 40.000 0.00 0.00 0.00 1.98
4297 4360 7.755373 GGTACCTTTTGAGAAATGTTCTAATGC 59.245 37.037 4.06 0.00 40.87 3.56
4320 4383 7.039923 GCCTGTAGTAAGATGCTATGTTAGGTA 60.040 40.741 0.00 0.00 0.00 3.08
4328 4394 5.835819 TCTTCTGCCTGTAGTAAGATGCTAT 59.164 40.000 0.00 0.00 0.00 2.97
4394 4460 3.006859 TCTCTTGCTGATTTCGAACTCCA 59.993 43.478 12.40 2.29 0.00 3.86
4395 4461 3.589988 TCTCTTGCTGATTTCGAACTCC 58.410 45.455 12.40 0.00 0.00 3.85
4443 4509 3.960102 ACAAGAGCCTGAAATCCAAAACA 59.040 39.130 0.00 0.00 0.00 2.83
4577 4643 5.066505 ACTCATGACAGTTTTGTTGACTTCC 59.933 40.000 0.00 0.00 37.76 3.46
4853 4926 3.153919 TCGGGGTTTTGGAATTGAAGAG 58.846 45.455 0.00 0.00 0.00 2.85
4894 4967 6.041409 TGTTATGCAAAGGGAAATCAAGTGAA 59.959 34.615 0.00 0.00 0.00 3.18
4917 4990 3.384168 TCTAGGGCTGTGATTGGTATGT 58.616 45.455 0.00 0.00 0.00 2.29
4969 5042 2.306805 TGCATCCTTGACTTCACTGGAT 59.693 45.455 6.99 6.99 38.89 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.