Multiple sequence alignment - TraesCS7A01G311800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G311800 chr7A 100.000 4919 0 0 1 4919 442276156 442271238 0.000000e+00 9084.0
1 TraesCS7A01G311800 chr7B 94.965 1728 50 15 3197 4919 387161491 387159796 0.000000e+00 2675.0
2 TraesCS7A01G311800 chr7B 94.502 1637 50 19 586 2184 387164280 387162646 0.000000e+00 2488.0
3 TraesCS7A01G311800 chr7B 91.954 609 30 5 2561 3151 387162653 387162046 0.000000e+00 835.0
4 TraesCS7A01G311800 chr7D 94.266 1622 60 8 586 2184 390693628 390692017 0.000000e+00 2449.0
5 TraesCS7A01G311800 chr7D 91.957 1778 69 27 3156 4919 390690937 390689220 0.000000e+00 2423.0
6 TraesCS7A01G311800 chr7D 91.100 618 28 6 2561 3151 390692024 390691407 0.000000e+00 811.0
7 TraesCS7A01G311800 chr7D 92.279 544 39 3 1 542 576062355 576061813 0.000000e+00 769.0
8 TraesCS7A01G311800 chr7D 93.103 58 3 1 2192 2249 273292841 273292785 3.160000e-12 84.2
9 TraesCS7A01G311800 chr4B 80.262 1221 151 34 886 2096 40074258 40075398 0.000000e+00 837.0
10 TraesCS7A01G311800 chr3A 92.279 544 36 4 1 542 639394784 639395323 0.000000e+00 767.0
11 TraesCS7A01G311800 chr3A 97.106 311 9 0 2253 2563 175624379 175624689 4.360000e-145 525.0
12 TraesCS7A01G311800 chr3A 97.106 311 9 0 2253 2563 728889302 728888992 4.360000e-145 525.0
13 TraesCS7A01G311800 chr3A 96.721 305 9 1 2256 2560 725605759 725605456 1.580000e-139 507.0
14 TraesCS7A01G311800 chr3A 96.393 305 10 1 2256 2560 725563429 725563126 7.350000e-138 501.0
15 TraesCS7A01G311800 chr3D 91.837 539 41 3 1 537 17884268 17884805 0.000000e+00 749.0
16 TraesCS7A01G311800 chr3D 89.174 545 55 4 1 542 419459182 419459725 0.000000e+00 676.0
17 TraesCS7A01G311800 chr2D 91.176 544 44 4 1 542 522693514 522694055 0.000000e+00 736.0
18 TraesCS7A01G311800 chr1D 89.541 545 51 6 1 542 276735261 276735802 0.000000e+00 686.0
19 TraesCS7A01G311800 chr4D 80.515 893 121 21 887 1769 27395046 27395895 1.930000e-178 636.0
20 TraesCS7A01G311800 chr4D 87.845 543 65 1 1 542 339325545 339326087 1.930000e-178 636.0
21 TraesCS7A01G311800 chrUn 87.661 543 65 2 1 542 112416253 112416794 8.990000e-177 630.0
22 TraesCS7A01G311800 chr6D 87.156 545 66 4 1 543 55411419 55411961 2.520000e-172 616.0
23 TraesCS7A01G311800 chr6D 91.525 59 4 1 2192 2250 191800885 191800828 4.080000e-11 80.5
24 TraesCS7A01G311800 chr4A 81.564 716 81 21 1381 2096 575780993 575780329 1.200000e-150 544.0
25 TraesCS7A01G311800 chr4A 97.735 309 5 1 2256 2562 182894087 182894395 9.380000e-147 531.0
26 TraesCS7A01G311800 chr6A 97.059 306 9 0 2256 2561 569480249 569480554 2.630000e-142 516.0
27 TraesCS7A01G311800 chr6A 96.104 154 6 0 2998 3151 498097133 498097286 8.170000e-63 252.0
28 TraesCS7A01G311800 chr6A 91.667 156 13 0 3154 3309 498097749 498097904 2.980000e-52 217.0
29 TraesCS7A01G311800 chr6A 93.220 59 2 1 2191 2249 399620727 399620783 8.770000e-13 86.1
30 TraesCS7A01G311800 chr6A 90.625 64 5 1 2189 2252 203770706 203770768 3.160000e-12 84.2
31 TraesCS7A01G311800 chr1A 96.764 309 9 1 2254 2561 68157349 68157041 9.440000e-142 514.0
32 TraesCS7A01G311800 chr1A 94.855 311 13 1 2254 2564 306143886 306144193 2.660000e-132 483.0
33 TraesCS7A01G311800 chr1A 93.930 313 15 1 2256 2564 465295062 465294750 2.070000e-128 470.0
34 TraesCS7A01G311800 chr3B 91.549 71 3 3 2180 2249 331359548 331359480 1.460000e-15 95.3
35 TraesCS7A01G311800 chr2A 93.220 59 1 2 2193 2250 290220649 290220593 3.160000e-12 84.2
36 TraesCS7A01G311800 chr1B 91.667 60 4 1 2190 2249 687136435 687136377 1.130000e-11 82.4
37 TraesCS7A01G311800 chr5B 90.323 62 5 1 2189 2250 690951792 690951732 4.080000e-11 80.5
38 TraesCS7A01G311800 chr5A 90.323 62 5 1 2190 2251 114683715 114683655 4.080000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G311800 chr7A 442271238 442276156 4918 True 9084.000000 9084 100.0000 1 4919 1 chr7A.!!$R1 4918
1 TraesCS7A01G311800 chr7B 387159796 387164280 4484 True 1999.333333 2675 93.8070 586 4919 3 chr7B.!!$R1 4333
2 TraesCS7A01G311800 chr7D 390689220 390693628 4408 True 1894.333333 2449 92.4410 586 4919 3 chr7D.!!$R3 4333
3 TraesCS7A01G311800 chr7D 576061813 576062355 542 True 769.000000 769 92.2790 1 542 1 chr7D.!!$R2 541
4 TraesCS7A01G311800 chr4B 40074258 40075398 1140 False 837.000000 837 80.2620 886 2096 1 chr4B.!!$F1 1210
5 TraesCS7A01G311800 chr3A 639394784 639395323 539 False 767.000000 767 92.2790 1 542 1 chr3A.!!$F2 541
6 TraesCS7A01G311800 chr3D 17884268 17884805 537 False 749.000000 749 91.8370 1 537 1 chr3D.!!$F1 536
7 TraesCS7A01G311800 chr3D 419459182 419459725 543 False 676.000000 676 89.1740 1 542 1 chr3D.!!$F2 541
8 TraesCS7A01G311800 chr2D 522693514 522694055 541 False 736.000000 736 91.1760 1 542 1 chr2D.!!$F1 541
9 TraesCS7A01G311800 chr1D 276735261 276735802 541 False 686.000000 686 89.5410 1 542 1 chr1D.!!$F1 541
10 TraesCS7A01G311800 chr4D 27395046 27395895 849 False 636.000000 636 80.5150 887 1769 1 chr4D.!!$F1 882
11 TraesCS7A01G311800 chr4D 339325545 339326087 542 False 636.000000 636 87.8450 1 542 1 chr4D.!!$F2 541
12 TraesCS7A01G311800 chrUn 112416253 112416794 541 False 630.000000 630 87.6610 1 542 1 chrUn.!!$F1 541
13 TraesCS7A01G311800 chr6D 55411419 55411961 542 False 616.000000 616 87.1560 1 543 1 chr6D.!!$F1 542
14 TraesCS7A01G311800 chr4A 575780329 575780993 664 True 544.000000 544 81.5640 1381 2096 1 chr4A.!!$R1 715
15 TraesCS7A01G311800 chr6A 498097133 498097904 771 False 234.500000 252 93.8855 2998 3309 2 chr6A.!!$F4 311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
863 885 0.179032 TCGCTGCCAGAAAGAACCAA 60.179 50.0 0.00 0.00 0.00 3.67 F
2221 2294 0.529337 ATCGTTCTGATGCAGAGGCG 60.529 55.0 13.41 13.41 41.75 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2302 2375 0.033208 ATGCCATTCCAATCCCACGT 60.033 50.0 0.0 0.0 0.0 4.49 R
4041 4732 0.331616 AAATCGGTTCTGGGAAGGGG 59.668 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 96 4.965119 AATCTCCCAAAAGCGTTGATAC 57.035 40.909 4.89 0.00 0.00 2.24
97 100 4.764823 TCTCCCAAAAGCGTTGATACAATT 59.235 37.500 4.89 0.00 0.00 2.32
107 110 9.535878 AAAGCGTTGATACAATTAAAAGGAAAA 57.464 25.926 0.00 0.00 0.00 2.29
152 155 2.412591 AGCATAGGAGCCCATAACAGT 58.587 47.619 0.00 0.00 34.23 3.55
193 196 2.664402 AAAAGGCCTCTCAAGCAAGA 57.336 45.000 5.23 0.00 0.00 3.02
474 479 5.585844 CCACATGGCAGTTTTCTTTTTCTTT 59.414 36.000 0.00 0.00 0.00 2.52
582 587 8.303876 TGTTTTATTTAGAAAAGACATCCAGGC 58.696 33.333 0.00 0.00 0.00 4.85
583 588 8.523658 GTTTTATTTAGAAAAGACATCCAGGCT 58.476 33.333 0.00 0.00 36.92 4.58
598 603 7.702785 ACATCCAGGCTTAATAATACATCCAT 58.297 34.615 0.00 0.00 0.00 3.41
600 605 6.406370 TCCAGGCTTAATAATACATCCATCG 58.594 40.000 0.00 0.00 0.00 3.84
606 611 8.338259 GGCTTAATAATACATCCATCGCATTAG 58.662 37.037 0.00 0.00 0.00 1.73
617 622 2.435372 TCGCATTAGGCCAATCCTTT 57.565 45.000 5.01 0.00 44.75 3.11
626 645 3.916035 AGGCCAATCCTTTTCTATTCCC 58.084 45.455 5.01 0.00 44.75 3.97
643 662 3.857854 CTGACGGCTGATGCGCAC 61.858 66.667 14.90 7.75 40.82 5.34
644 663 4.678499 TGACGGCTGATGCGCACA 62.678 61.111 14.90 12.55 40.82 4.57
861 883 1.131315 GATTCGCTGCCAGAAAGAACC 59.869 52.381 0.00 0.00 0.00 3.62
863 885 0.179032 TCGCTGCCAGAAAGAACCAA 60.179 50.000 0.00 0.00 0.00 3.67
939 961 2.747460 GACTCTGCCGCATGCCAA 60.747 61.111 13.15 0.00 40.16 4.52
1450 1517 2.751436 TTTCCCTGCTGCCGCATC 60.751 61.111 2.34 0.00 46.74 3.91
1968 2038 2.672996 GCTGCGGCTGAAGGGAAA 60.673 61.111 11.21 0.00 35.22 3.13
1971 2041 2.351276 GCGGCTGAAGGGAAAGGA 59.649 61.111 0.00 0.00 0.00 3.36
2100 2170 5.046910 AGGTGAGAAATTATTTGTGTGCG 57.953 39.130 0.00 0.00 0.00 5.34
2125 2198 1.204941 AGCGCCTTATCAGAGTTTCGT 59.795 47.619 2.29 0.00 0.00 3.85
2180 2253 8.441312 TTGTGTTTAGGTTGAGTAGGTTTAAG 57.559 34.615 0.00 0.00 0.00 1.85
2181 2254 6.484308 TGTGTTTAGGTTGAGTAGGTTTAAGC 59.516 38.462 0.00 0.00 0.00 3.09
2182 2255 6.484308 GTGTTTAGGTTGAGTAGGTTTAAGCA 59.516 38.462 0.00 0.00 0.00 3.91
2183 2256 7.012610 GTGTTTAGGTTGAGTAGGTTTAAGCAA 59.987 37.037 0.00 0.00 0.00 3.91
2184 2257 7.556996 TGTTTAGGTTGAGTAGGTTTAAGCAAA 59.443 33.333 0.00 0.00 0.00 3.68
2185 2258 8.407832 GTTTAGGTTGAGTAGGTTTAAGCAAAA 58.592 33.333 0.00 0.00 0.00 2.44
2186 2259 6.635030 AGGTTGAGTAGGTTTAAGCAAAAG 57.365 37.500 0.00 0.00 0.00 2.27
2187 2260 6.127101 AGGTTGAGTAGGTTTAAGCAAAAGT 58.873 36.000 0.00 0.00 0.00 2.66
2188 2261 6.605995 AGGTTGAGTAGGTTTAAGCAAAAGTT 59.394 34.615 0.00 0.00 0.00 2.66
2189 2262 7.123697 AGGTTGAGTAGGTTTAAGCAAAAGTTT 59.876 33.333 0.00 0.00 0.00 2.66
2190 2263 8.407832 GGTTGAGTAGGTTTAAGCAAAAGTTTA 58.592 33.333 0.00 0.00 0.00 2.01
2191 2264 9.961265 GTTGAGTAGGTTTAAGCAAAAGTTTAT 57.039 29.630 0.00 0.00 0.00 1.40
2192 2265 9.959749 TTGAGTAGGTTTAAGCAAAAGTTTATG 57.040 29.630 0.00 0.00 0.00 1.90
2193 2266 8.573035 TGAGTAGGTTTAAGCAAAAGTTTATGG 58.427 33.333 0.00 0.00 0.00 2.74
2194 2267 7.375834 AGTAGGTTTAAGCAAAAGTTTATGGC 58.624 34.615 0.00 0.00 0.00 4.40
2195 2268 5.547465 AGGTTTAAGCAAAAGTTTATGGCC 58.453 37.500 0.00 0.00 0.00 5.36
2196 2269 5.071115 AGGTTTAAGCAAAAGTTTATGGCCA 59.929 36.000 8.56 8.56 0.00 5.36
2197 2270 5.937540 GGTTTAAGCAAAAGTTTATGGCCAT 59.062 36.000 24.45 24.45 0.00 4.40
2198 2271 7.038658 AGGTTTAAGCAAAAGTTTATGGCCATA 60.039 33.333 21.94 21.94 0.00 2.74
2199 2272 7.768582 GGTTTAAGCAAAAGTTTATGGCCATAT 59.231 33.333 25.95 8.96 0.00 1.78
2200 2273 8.603181 GTTTAAGCAAAAGTTTATGGCCATATG 58.397 33.333 25.95 19.64 0.00 1.78
2201 2274 4.696455 AGCAAAAGTTTATGGCCATATGC 58.304 39.130 27.97 27.97 40.16 3.14
2202 2275 4.161942 AGCAAAAGTTTATGGCCATATGCA 59.838 37.500 32.79 17.42 43.89 3.96
2203 2276 5.058490 GCAAAAGTTTATGGCCATATGCAT 58.942 37.500 29.30 16.35 43.89 3.96
2204 2277 5.178067 GCAAAAGTTTATGGCCATATGCATC 59.822 40.000 29.30 15.37 43.89 3.91
2205 2278 4.771590 AAGTTTATGGCCATATGCATCG 57.228 40.909 25.95 0.00 43.89 3.84
2206 2279 3.754965 AGTTTATGGCCATATGCATCGT 58.245 40.909 25.95 0.00 43.89 3.73
2207 2280 4.144297 AGTTTATGGCCATATGCATCGTT 58.856 39.130 25.95 0.00 43.89 3.85
2208 2281 4.216257 AGTTTATGGCCATATGCATCGTTC 59.784 41.667 25.95 8.78 43.89 3.95
2209 2282 2.574006 ATGGCCATATGCATCGTTCT 57.426 45.000 19.18 0.00 43.89 3.01
2210 2283 1.596603 TGGCCATATGCATCGTTCTG 58.403 50.000 0.00 0.00 43.89 3.02
2211 2284 1.140652 TGGCCATATGCATCGTTCTGA 59.859 47.619 0.00 0.00 43.89 3.27
2212 2285 2.224597 TGGCCATATGCATCGTTCTGAT 60.225 45.455 0.00 0.00 43.89 2.90
2220 2293 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
2221 2294 0.529337 ATCGTTCTGATGCAGAGGCG 60.529 55.000 13.41 13.41 41.75 5.52
2222 2295 2.169789 CGTTCTGATGCAGAGGCGG 61.170 63.158 12.39 0.00 41.75 6.13
2223 2296 1.817099 GTTCTGATGCAGAGGCGGG 60.817 63.158 0.00 0.00 41.75 6.13
2224 2297 3.035173 TTCTGATGCAGAGGCGGGG 62.035 63.158 0.00 0.00 41.75 5.73
2225 2298 4.559063 CTGATGCAGAGGCGGGGG 62.559 72.222 0.00 0.00 45.35 5.40
2241 2314 2.361230 GGCCTGACCCCCTTTTCG 60.361 66.667 0.00 0.00 0.00 3.46
2242 2315 2.754375 GCCTGACCCCCTTTTCGA 59.246 61.111 0.00 0.00 0.00 3.71
2243 2316 1.074248 GCCTGACCCCCTTTTCGAA 59.926 57.895 0.00 0.00 0.00 3.71
2244 2317 0.538746 GCCTGACCCCCTTTTCGAAA 60.539 55.000 6.47 6.47 0.00 3.46
2245 2318 1.989706 CCTGACCCCCTTTTCGAAAA 58.010 50.000 21.35 21.35 0.00 2.29
2246 2319 2.312390 CCTGACCCCCTTTTCGAAAAA 58.688 47.619 22.67 6.75 0.00 1.94
2269 2342 7.914427 AAAAAGGTTTAGGGACTCTTTGATT 57.086 32.000 0.00 0.00 41.75 2.57
2270 2343 7.526142 AAAAGGTTTAGGGACTCTTTGATTC 57.474 36.000 0.00 0.00 41.75 2.52
2271 2344 4.833390 AGGTTTAGGGACTCTTTGATTCG 58.167 43.478 0.00 0.00 41.75 3.34
2272 2345 4.286291 AGGTTTAGGGACTCTTTGATTCGT 59.714 41.667 0.00 0.00 41.75 3.85
2273 2346 5.482878 AGGTTTAGGGACTCTTTGATTCGTA 59.517 40.000 0.00 0.00 41.75 3.43
2274 2347 5.811100 GGTTTAGGGACTCTTTGATTCGTAG 59.189 44.000 0.00 0.00 41.75 3.51
2275 2348 5.593679 TTAGGGACTCTTTGATTCGTAGG 57.406 43.478 0.00 0.00 41.75 3.18
2276 2349 3.709587 AGGGACTCTTTGATTCGTAGGA 58.290 45.455 0.00 0.00 0.00 2.94
2277 2350 4.290942 AGGGACTCTTTGATTCGTAGGAT 58.709 43.478 0.00 0.00 0.00 3.24
2278 2351 4.717280 AGGGACTCTTTGATTCGTAGGATT 59.283 41.667 0.00 0.00 0.00 3.01
2279 2352 5.189934 AGGGACTCTTTGATTCGTAGGATTT 59.810 40.000 0.00 0.00 0.00 2.17
2280 2353 5.524281 GGGACTCTTTGATTCGTAGGATTTC 59.476 44.000 0.00 0.00 0.00 2.17
2281 2354 5.524281 GGACTCTTTGATTCGTAGGATTTCC 59.476 44.000 0.00 0.00 0.00 3.13
2282 2355 5.429130 ACTCTTTGATTCGTAGGATTTCCC 58.571 41.667 0.00 0.00 36.42 3.97
2283 2356 5.045869 ACTCTTTGATTCGTAGGATTTCCCA 60.046 40.000 0.00 0.00 37.41 4.37
2284 2357 5.811190 TCTTTGATTCGTAGGATTTCCCAA 58.189 37.500 0.00 0.00 37.41 4.12
2285 2358 6.242396 TCTTTGATTCGTAGGATTTCCCAAA 58.758 36.000 0.00 0.00 37.41 3.28
2286 2359 6.889722 TCTTTGATTCGTAGGATTTCCCAAAT 59.110 34.615 0.00 0.00 37.41 2.32
2287 2360 6.449635 TTGATTCGTAGGATTTCCCAAATG 57.550 37.500 0.00 0.00 37.41 2.32
2288 2361 4.338118 TGATTCGTAGGATTTCCCAAATGC 59.662 41.667 0.00 0.00 39.24 3.56
2289 2362 3.358111 TCGTAGGATTTCCCAAATGCA 57.642 42.857 0.00 0.00 41.13 3.96
2290 2363 3.278574 TCGTAGGATTTCCCAAATGCAG 58.721 45.455 0.00 0.00 41.13 4.41
2291 2364 2.358898 CGTAGGATTTCCCAAATGCAGG 59.641 50.000 0.00 0.00 41.13 4.85
2292 2365 2.925966 AGGATTTCCCAAATGCAGGA 57.074 45.000 0.00 0.00 41.13 3.86
2293 2366 3.188880 AGGATTTCCCAAATGCAGGAA 57.811 42.857 1.16 1.16 41.13 3.36
2294 2367 3.727948 AGGATTTCCCAAATGCAGGAAT 58.272 40.909 6.02 0.00 41.69 3.01
2295 2368 4.882559 AGGATTTCCCAAATGCAGGAATA 58.117 39.130 6.02 0.00 41.69 1.75
2296 2369 4.897670 AGGATTTCCCAAATGCAGGAATAG 59.102 41.667 6.02 0.00 41.69 1.73
2297 2370 4.039609 GGATTTCCCAAATGCAGGAATAGG 59.960 45.833 6.02 0.00 41.69 2.57
2298 2371 4.329638 TTTCCCAAATGCAGGAATAGGA 57.670 40.909 6.02 0.00 41.69 2.94
2299 2372 4.329638 TTCCCAAATGCAGGAATAGGAA 57.670 40.909 1.16 1.94 37.23 3.36
2300 2373 4.329638 TCCCAAATGCAGGAATAGGAAA 57.670 40.909 0.00 0.00 0.00 3.13
2301 2374 4.682563 TCCCAAATGCAGGAATAGGAAAA 58.317 39.130 0.00 0.00 0.00 2.29
2302 2375 5.090139 TCCCAAATGCAGGAATAGGAAAAA 58.910 37.500 0.00 0.00 0.00 1.94
2303 2376 5.046663 TCCCAAATGCAGGAATAGGAAAAAC 60.047 40.000 0.00 0.00 0.00 2.43
2304 2377 4.864247 CCAAATGCAGGAATAGGAAAAACG 59.136 41.667 0.00 0.00 0.00 3.60
2305 2378 5.469479 CAAATGCAGGAATAGGAAAAACGT 58.531 37.500 0.00 0.00 0.00 3.99
2306 2379 4.701956 ATGCAGGAATAGGAAAAACGTG 57.298 40.909 0.00 0.00 0.00 4.49
2307 2380 2.817258 TGCAGGAATAGGAAAAACGTGG 59.183 45.455 0.00 0.00 0.00 4.94
2308 2381 2.163613 GCAGGAATAGGAAAAACGTGGG 59.836 50.000 0.00 0.00 0.00 4.61
2309 2382 3.681593 CAGGAATAGGAAAAACGTGGGA 58.318 45.455 0.00 0.00 0.00 4.37
2310 2383 4.270008 CAGGAATAGGAAAAACGTGGGAT 58.730 43.478 0.00 0.00 0.00 3.85
2311 2384 4.705023 CAGGAATAGGAAAAACGTGGGATT 59.295 41.667 0.00 0.00 0.00 3.01
2312 2385 4.705023 AGGAATAGGAAAAACGTGGGATTG 59.295 41.667 0.00 0.00 0.00 2.67
2313 2386 4.142249 GGAATAGGAAAAACGTGGGATTGG 60.142 45.833 0.00 0.00 0.00 3.16
2314 2387 2.668144 AGGAAAAACGTGGGATTGGA 57.332 45.000 0.00 0.00 0.00 3.53
2315 2388 2.952116 AGGAAAAACGTGGGATTGGAA 58.048 42.857 0.00 0.00 0.00 3.53
2316 2389 3.506398 AGGAAAAACGTGGGATTGGAAT 58.494 40.909 0.00 0.00 0.00 3.01
2317 2390 3.258123 AGGAAAAACGTGGGATTGGAATG 59.742 43.478 0.00 0.00 0.00 2.67
2318 2391 3.584834 GAAAAACGTGGGATTGGAATGG 58.415 45.455 0.00 0.00 0.00 3.16
2319 2392 0.894835 AAACGTGGGATTGGAATGGC 59.105 50.000 0.00 0.00 0.00 4.40
2320 2393 0.251564 AACGTGGGATTGGAATGGCA 60.252 50.000 0.00 0.00 0.00 4.92
2321 2394 0.033208 ACGTGGGATTGGAATGGCAT 60.033 50.000 0.00 0.00 0.00 4.40
2322 2395 0.386476 CGTGGGATTGGAATGGCATG 59.614 55.000 0.00 0.00 0.00 4.06
2323 2396 1.488390 GTGGGATTGGAATGGCATGT 58.512 50.000 0.00 0.00 0.00 3.21
2324 2397 1.410153 GTGGGATTGGAATGGCATGTC 59.590 52.381 0.00 0.82 0.00 3.06
2325 2398 1.006878 TGGGATTGGAATGGCATGTCA 59.993 47.619 0.60 0.60 0.00 3.58
2326 2399 2.322658 GGGATTGGAATGGCATGTCAT 58.677 47.619 7.07 7.07 0.00 3.06
2327 2400 2.298163 GGGATTGGAATGGCATGTCATC 59.702 50.000 14.31 7.19 0.00 2.92
2328 2401 3.228453 GGATTGGAATGGCATGTCATCT 58.772 45.455 14.31 3.95 0.00 2.90
2329 2402 3.640029 GGATTGGAATGGCATGTCATCTT 59.360 43.478 14.31 0.00 0.00 2.40
2330 2403 4.500887 GGATTGGAATGGCATGTCATCTTG 60.501 45.833 14.31 0.00 0.00 3.02
2331 2404 3.369242 TGGAATGGCATGTCATCTTGA 57.631 42.857 14.31 0.00 0.00 3.02
2332 2405 3.699413 TGGAATGGCATGTCATCTTGAA 58.301 40.909 14.31 0.00 0.00 2.69
2333 2406 4.283337 TGGAATGGCATGTCATCTTGAAT 58.717 39.130 14.31 0.00 0.00 2.57
2334 2407 4.712829 TGGAATGGCATGTCATCTTGAATT 59.287 37.500 14.31 0.00 0.00 2.17
2335 2408 5.163488 TGGAATGGCATGTCATCTTGAATTC 60.163 40.000 14.31 6.14 0.00 2.17
2336 2409 5.068723 GGAATGGCATGTCATCTTGAATTCT 59.931 40.000 14.31 0.00 31.74 2.40
2337 2410 6.263842 GGAATGGCATGTCATCTTGAATTCTA 59.736 38.462 14.31 0.00 31.74 2.10
2338 2411 6.630444 ATGGCATGTCATCTTGAATTCTAC 57.370 37.500 7.07 0.00 0.00 2.59
2339 2412 5.499313 TGGCATGTCATCTTGAATTCTACA 58.501 37.500 7.05 2.54 0.00 2.74
2340 2413 6.124340 TGGCATGTCATCTTGAATTCTACAT 58.876 36.000 7.05 4.59 0.00 2.29
2341 2414 6.038936 TGGCATGTCATCTTGAATTCTACATG 59.961 38.462 18.97 18.97 43.39 3.21
2342 2415 6.261603 GGCATGTCATCTTGAATTCTACATGA 59.738 38.462 23.16 15.87 43.28 3.07
2343 2416 7.040617 GGCATGTCATCTTGAATTCTACATGAT 60.041 37.037 23.16 10.94 43.28 2.45
2344 2417 8.350722 GCATGTCATCTTGAATTCTACATGATT 58.649 33.333 23.16 10.52 43.28 2.57
2345 2418 9.665264 CATGTCATCTTGAATTCTACATGATTG 57.335 33.333 18.74 12.88 43.28 2.67
2346 2419 8.797350 TGTCATCTTGAATTCTACATGATTGT 57.203 30.769 10.07 0.00 39.98 2.71
2347 2420 9.889128 TGTCATCTTGAATTCTACATGATTGTA 57.111 29.630 10.07 0.00 37.28 2.41
2354 2427 9.671279 TTGAATTCTACATGATTGTATGAGTGT 57.329 29.630 7.05 0.00 37.68 3.55
2355 2428 9.671279 TGAATTCTACATGATTGTATGAGTGTT 57.329 29.630 7.05 0.00 37.68 3.32
2358 2431 9.671279 ATTCTACATGATTGTATGAGTGTTTGA 57.329 29.630 0.00 0.00 37.68 2.69
2359 2432 9.671279 TTCTACATGATTGTATGAGTGTTTGAT 57.329 29.630 0.00 0.00 37.68 2.57
2360 2433 9.671279 TCTACATGATTGTATGAGTGTTTGATT 57.329 29.630 0.00 0.00 37.68 2.57
2361 2434 9.712359 CTACATGATTGTATGAGTGTTTGATTG 57.288 33.333 0.00 0.00 37.68 2.67
2362 2435 8.114331 ACATGATTGTATGAGTGTTTGATTGT 57.886 30.769 0.00 0.00 33.16 2.71
2363 2436 8.024865 ACATGATTGTATGAGTGTTTGATTGTG 58.975 33.333 0.00 0.00 33.16 3.33
2364 2437 6.380995 TGATTGTATGAGTGTTTGATTGTGC 58.619 36.000 0.00 0.00 0.00 4.57
2365 2438 5.764487 TTGTATGAGTGTTTGATTGTGCA 57.236 34.783 0.00 0.00 0.00 4.57
2366 2439 5.963176 TGTATGAGTGTTTGATTGTGCAT 57.037 34.783 0.00 0.00 0.00 3.96
2367 2440 7.446001 TTGTATGAGTGTTTGATTGTGCATA 57.554 32.000 0.00 0.00 0.00 3.14
2368 2441 7.446001 TGTATGAGTGTTTGATTGTGCATAA 57.554 32.000 0.00 0.00 0.00 1.90
2369 2442 7.529158 TGTATGAGTGTTTGATTGTGCATAAG 58.471 34.615 1.43 0.00 0.00 1.73
2370 2443 6.822667 ATGAGTGTTTGATTGTGCATAAGA 57.177 33.333 1.43 0.00 0.00 2.10
2371 2444 6.631971 TGAGTGTTTGATTGTGCATAAGAA 57.368 33.333 1.43 0.00 0.00 2.52
2372 2445 7.036996 TGAGTGTTTGATTGTGCATAAGAAA 57.963 32.000 1.43 0.98 0.00 2.52
2373 2446 7.487484 TGAGTGTTTGATTGTGCATAAGAAAA 58.513 30.769 1.43 2.38 0.00 2.29
2374 2447 7.978414 TGAGTGTTTGATTGTGCATAAGAAAAA 59.022 29.630 1.43 0.00 0.00 1.94
2375 2448 8.130307 AGTGTTTGATTGTGCATAAGAAAAAC 57.870 30.769 17.04 17.04 0.00 2.43
2376 2449 7.043458 AGTGTTTGATTGTGCATAAGAAAAACG 60.043 33.333 17.91 0.00 0.00 3.60
2377 2450 6.754209 TGTTTGATTGTGCATAAGAAAAACGT 59.246 30.769 17.91 0.00 0.00 3.99
2378 2451 7.915923 TGTTTGATTGTGCATAAGAAAAACGTA 59.084 29.630 17.91 6.77 0.00 3.57
2379 2452 8.417176 GTTTGATTGTGCATAAGAAAAACGTAG 58.583 33.333 1.43 0.00 0.00 3.51
2380 2453 6.607689 TGATTGTGCATAAGAAAAACGTAGG 58.392 36.000 1.43 0.00 0.00 3.18
2381 2454 6.428465 TGATTGTGCATAAGAAAAACGTAGGA 59.572 34.615 1.43 0.00 0.00 2.94
2382 2455 6.811253 TTGTGCATAAGAAAAACGTAGGAT 57.189 33.333 0.00 0.00 0.00 3.24
2383 2456 6.811253 TGTGCATAAGAAAAACGTAGGATT 57.189 33.333 0.00 0.00 0.00 3.01
2384 2457 6.837992 TGTGCATAAGAAAAACGTAGGATTC 58.162 36.000 0.00 0.00 0.00 2.52
2385 2458 6.653320 TGTGCATAAGAAAAACGTAGGATTCT 59.347 34.615 0.00 0.00 33.73 2.40
2386 2459 7.174253 TGTGCATAAGAAAAACGTAGGATTCTT 59.826 33.333 16.69 16.69 42.82 2.52
2387 2460 8.021396 GTGCATAAGAAAAACGTAGGATTCTTT 58.979 33.333 17.32 0.00 41.15 2.52
2388 2461 8.234546 TGCATAAGAAAAACGTAGGATTCTTTC 58.765 33.333 17.32 10.87 41.15 2.62
2389 2462 8.234546 GCATAAGAAAAACGTAGGATTCTTTCA 58.765 33.333 17.32 6.65 41.15 2.69
2393 2466 8.446599 AGAAAAACGTAGGATTCTTTCAAAGA 57.553 30.769 0.00 0.00 35.26 2.52
2394 2467 8.560374 AGAAAAACGTAGGATTCTTTCAAAGAG 58.440 33.333 0.00 0.00 39.03 2.85
2395 2468 6.803154 AAACGTAGGATTCTTTCAAAGAGG 57.197 37.500 0.00 0.00 39.03 3.69
2396 2469 5.485209 ACGTAGGATTCTTTCAAAGAGGT 57.515 39.130 0.00 0.00 39.03 3.85
2397 2470 5.866207 ACGTAGGATTCTTTCAAAGAGGTT 58.134 37.500 0.00 0.00 39.03 3.50
2398 2471 6.296803 ACGTAGGATTCTTTCAAAGAGGTTT 58.703 36.000 0.00 0.00 39.03 3.27
2399 2472 6.204882 ACGTAGGATTCTTTCAAAGAGGTTTG 59.795 38.462 0.00 0.00 43.96 2.93
2408 2481 3.754965 TCAAAGAGGTTTGAGTGGATGG 58.245 45.455 0.00 0.00 45.82 3.51
2409 2482 3.394274 TCAAAGAGGTTTGAGTGGATGGA 59.606 43.478 0.00 0.00 45.82 3.41
2410 2483 4.141274 TCAAAGAGGTTTGAGTGGATGGAA 60.141 41.667 0.00 0.00 45.82 3.53
2411 2484 4.453480 AAGAGGTTTGAGTGGATGGAAA 57.547 40.909 0.00 0.00 0.00 3.13
2412 2485 4.453480 AGAGGTTTGAGTGGATGGAAAA 57.547 40.909 0.00 0.00 0.00 2.29
2413 2486 5.003096 AGAGGTTTGAGTGGATGGAAAAT 57.997 39.130 0.00 0.00 0.00 1.82
2414 2487 5.397360 AGAGGTTTGAGTGGATGGAAAATT 58.603 37.500 0.00 0.00 0.00 1.82
2415 2488 5.840693 AGAGGTTTGAGTGGATGGAAAATTT 59.159 36.000 0.00 0.00 0.00 1.82
2416 2489 6.015095 AGAGGTTTGAGTGGATGGAAAATTTC 60.015 38.462 0.00 0.00 0.00 2.17
2448 2521 9.866655 AAATCTAGTGCAAATAAATCCTATGGA 57.133 29.630 0.00 0.00 35.55 3.41
2449 2522 9.866655 AATCTAGTGCAAATAAATCCTATGGAA 57.133 29.630 0.00 0.00 34.34 3.53
2450 2523 9.866655 ATCTAGTGCAAATAAATCCTATGGAAA 57.133 29.630 0.00 0.00 34.34 3.13
2451 2524 9.693739 TCTAGTGCAAATAAATCCTATGGAAAA 57.306 29.630 0.00 0.00 34.34 2.29
2471 2544 7.031372 GGAAAAATTCCTACGGTTTACAATCC 58.969 38.462 1.86 0.00 46.57 3.01
2472 2545 7.094075 GGAAAAATTCCTACGGTTTACAATCCT 60.094 37.037 1.86 0.00 46.57 3.24
2473 2546 8.866970 AAAAATTCCTACGGTTTACAATCCTA 57.133 30.769 0.00 0.00 0.00 2.94
2474 2547 7.854557 AAATTCCTACGGTTTACAATCCTAC 57.145 36.000 0.00 0.00 0.00 3.18
2475 2548 4.637483 TCCTACGGTTTACAATCCTACG 57.363 45.455 0.00 0.00 0.00 3.51
2476 2549 4.269183 TCCTACGGTTTACAATCCTACGA 58.731 43.478 0.00 0.00 0.00 3.43
2477 2550 4.704540 TCCTACGGTTTACAATCCTACGAA 59.295 41.667 0.00 0.00 0.00 3.85
2478 2551 5.360714 TCCTACGGTTTACAATCCTACGAAT 59.639 40.000 0.00 0.00 0.00 3.34
2479 2552 5.689068 CCTACGGTTTACAATCCTACGAATC 59.311 44.000 0.00 0.00 0.00 2.52
2480 2553 5.075858 ACGGTTTACAATCCTACGAATCA 57.924 39.130 0.00 0.00 0.00 2.57
2481 2554 5.481105 ACGGTTTACAATCCTACGAATCAA 58.519 37.500 0.00 0.00 0.00 2.57
2482 2555 5.933463 ACGGTTTACAATCCTACGAATCAAA 59.067 36.000 0.00 0.00 0.00 2.69
2483 2556 6.128472 ACGGTTTACAATCCTACGAATCAAAC 60.128 38.462 0.00 0.00 0.00 2.93
2484 2557 6.128499 CGGTTTACAATCCTACGAATCAAACA 60.128 38.462 0.00 0.00 0.00 2.83
2485 2558 7.571613 CGGTTTACAATCCTACGAATCAAACAA 60.572 37.037 0.00 0.00 0.00 2.83
2486 2559 7.536281 GGTTTACAATCCTACGAATCAAACAAC 59.464 37.037 0.00 0.00 0.00 3.32
2487 2560 5.622770 ACAATCCTACGAATCAAACAACC 57.377 39.130 0.00 0.00 0.00 3.77
2488 2561 4.457949 ACAATCCTACGAATCAAACAACCC 59.542 41.667 0.00 0.00 0.00 4.11
2489 2562 3.773418 TCCTACGAATCAAACAACCCA 57.227 42.857 0.00 0.00 0.00 4.51
2490 2563 3.404899 TCCTACGAATCAAACAACCCAC 58.595 45.455 0.00 0.00 0.00 4.61
2491 2564 2.158841 CCTACGAATCAAACAACCCACG 59.841 50.000 0.00 0.00 0.00 4.94
2492 2565 1.670791 ACGAATCAAACAACCCACGT 58.329 45.000 0.00 0.00 0.00 4.49
2493 2566 2.836262 ACGAATCAAACAACCCACGTA 58.164 42.857 0.00 0.00 0.00 3.57
2494 2567 2.803956 ACGAATCAAACAACCCACGTAG 59.196 45.455 0.00 0.00 0.00 3.51
2495 2568 2.158841 CGAATCAAACAACCCACGTAGG 59.841 50.000 0.00 0.00 37.03 3.18
2496 2569 3.404899 GAATCAAACAACCCACGTAGGA 58.595 45.455 7.14 0.00 41.22 2.94
2497 2570 3.495434 ATCAAACAACCCACGTAGGAA 57.505 42.857 7.14 0.00 41.22 3.36
2498 2571 3.278668 TCAAACAACCCACGTAGGAAA 57.721 42.857 7.14 0.00 41.22 3.13
2499 2572 3.618351 TCAAACAACCCACGTAGGAAAA 58.382 40.909 7.14 0.00 41.22 2.29
2500 2573 4.015084 TCAAACAACCCACGTAGGAAAAA 58.985 39.130 7.14 0.00 41.22 1.94
2546 2619 8.248904 TCAAAATTCCTTTGAGAATCCTTTGA 57.751 30.769 8.80 8.80 46.80 2.69
2547 2620 8.703743 TCAAAATTCCTTTGAGAATCCTTTGAA 58.296 29.630 9.83 0.00 46.80 2.69
2548 2621 9.498176 CAAAATTCCTTTGAGAATCCTTTGAAT 57.502 29.630 5.90 0.00 46.35 2.57
2549 2622 9.716531 AAAATTCCTTTGAGAATCCTTTGAATC 57.283 29.630 0.00 0.00 35.40 2.52
2550 2623 8.426569 AATTCCTTTGAGAATCCTTTGAATCA 57.573 30.769 0.00 0.00 35.40 2.57
2551 2624 7.838079 TTCCTTTGAGAATCCTTTGAATCAA 57.162 32.000 0.00 0.00 0.00 2.57
2552 2625 7.838079 TCCTTTGAGAATCCTTTGAATCAAA 57.162 32.000 8.25 8.25 33.82 2.69
2605 2678 9.093970 CACATAATCTTGATGAATTTTGTGCAT 57.906 29.630 0.00 0.00 0.00 3.96
2638 2711 6.536941 GTCTACAGGACCAGATCTTCAATTTC 59.463 42.308 0.00 0.00 38.93 2.17
2642 2715 6.376581 ACAGGACCAGATCTTCAATTTCATTC 59.623 38.462 0.00 0.00 0.00 2.67
2655 2728 9.158233 CTTCAATTTCATTCCAGCAAATGTTAT 57.842 29.630 6.43 0.95 37.77 1.89
2667 2740 9.679661 TCCAGCAAATGTTATCTTAGATGTTAA 57.320 29.630 4.78 0.00 0.00 2.01
2685 2768 6.524101 TGTTAAATGTTCTCCCTATTTGGC 57.476 37.500 0.00 0.00 0.00 4.52
2689 2772 1.339631 TGTTCTCCCTATTTGGCGTGG 60.340 52.381 0.00 0.00 0.00 4.94
2698 2781 2.490328 ATTTGGCGTGGCGATAATTG 57.510 45.000 0.00 0.00 0.00 2.32
2701 2784 2.025589 TGGCGTGGCGATAATTGTAA 57.974 45.000 0.00 0.00 0.00 2.41
2703 2786 3.729966 TGGCGTGGCGATAATTGTAATA 58.270 40.909 0.00 0.00 0.00 0.98
2809 2901 8.593945 TTATTTTCCATCTTATTGCCAGTCTT 57.406 30.769 0.00 0.00 0.00 3.01
2930 3022 2.595386 CGCATTTTAGGTGCAGGTTTC 58.405 47.619 0.00 0.00 42.62 2.78
2960 3060 0.250510 TGTGGATGCACGCCAGTTTA 60.251 50.000 13.03 0.00 35.77 2.01
3120 3220 7.229506 CCATAATCTTGCCTTACTTAGAAAGGG 59.770 40.741 4.18 0.00 43.21 3.95
3161 3847 6.926272 CCTAGGACTAAACAATCTCTGCATAC 59.074 42.308 1.05 0.00 0.00 2.39
3191 3877 6.145209 CACCAACTATCATTTCTCTCTATGCG 59.855 42.308 0.00 0.00 0.00 4.73
3193 3879 7.014326 ACCAACTATCATTTCTCTCTATGCGTA 59.986 37.037 0.00 0.00 0.00 4.42
3248 3934 1.817099 GCAGATGGACAGGGCTTCG 60.817 63.158 0.00 0.00 0.00 3.79
3300 3986 0.675837 GCTCCTGCACAAGATCAGCA 60.676 55.000 0.00 0.00 39.41 4.41
3372 4058 1.604593 CCCACAAGCTTCCACCCTG 60.605 63.158 0.00 0.00 0.00 4.45
3419 4105 2.202676 CGCGTGAAGGAGGAGCTC 60.203 66.667 4.71 4.71 0.00 4.09
3496 4182 6.035368 TCTCTTGAGACCTCTGAATTTCAG 57.965 41.667 18.49 18.49 45.59 3.02
3518 4204 3.433615 GTCAGGAAATTCAGACCTTGACG 59.566 47.826 6.56 0.00 34.94 4.35
3903 4590 2.124320 CAATCCGCGGGGTTCCAT 60.124 61.111 27.83 7.20 33.83 3.41
3904 4591 2.186826 CAATCCGCGGGGTTCCATC 61.187 63.158 27.83 0.00 33.83 3.51
3905 4592 2.375345 AATCCGCGGGGTTCCATCT 61.375 57.895 27.83 0.00 33.83 2.90
3918 4605 0.673985 TCCATCTTCCCGCGATGTAG 59.326 55.000 8.23 1.34 37.22 2.74
3919 4606 0.319900 CCATCTTCCCGCGATGTAGG 60.320 60.000 8.23 0.00 37.22 3.18
3920 4607 0.673985 CATCTTCCCGCGATGTAGGA 59.326 55.000 8.23 1.19 34.87 2.94
3921 4608 0.962489 ATCTTCCCGCGATGTAGGAG 59.038 55.000 8.23 0.00 0.00 3.69
4029 4720 1.208293 GGAGAAGCTACCTCACCTTGG 59.792 57.143 15.34 0.00 32.48 3.61
4041 4732 3.557264 CCTCACCTTGGGTAGTCTGAAAC 60.557 52.174 0.00 0.00 32.11 2.78
4042 4733 2.370849 TCACCTTGGGTAGTCTGAAACC 59.629 50.000 2.55 2.55 32.11 3.27
4056 4747 0.608308 GAAACCCCTTCCCAGAACCG 60.608 60.000 0.00 0.00 0.00 4.44
4156 4847 7.156876 TGCCTGATGTTACCTTATTTTTCAG 57.843 36.000 0.00 0.00 0.00 3.02
4244 4936 0.942252 GTCTTTTCGGTTCCTTGCGT 59.058 50.000 0.00 0.00 0.00 5.24
4263 4955 2.032030 CGTGATGTTTTTCTGGCGTCTT 60.032 45.455 0.00 0.00 0.00 3.01
4309 5001 2.933260 GTTTGCAAAATCCAAACGGTGT 59.067 40.909 14.67 0.00 41.55 4.16
4341 5045 4.528206 TCAGTTATTGGAAGCACAGAGAGA 59.472 41.667 0.00 0.00 0.00 3.10
4342 5046 4.869297 CAGTTATTGGAAGCACAGAGAGAG 59.131 45.833 0.00 0.00 0.00 3.20
4343 5047 4.774726 AGTTATTGGAAGCACAGAGAGAGA 59.225 41.667 0.00 0.00 0.00 3.10
4344 5048 3.891422 ATTGGAAGCACAGAGAGAGAG 57.109 47.619 0.00 0.00 0.00 3.20
4345 5049 2.593925 TGGAAGCACAGAGAGAGAGA 57.406 50.000 0.00 0.00 0.00 3.10
4346 5050 2.445427 TGGAAGCACAGAGAGAGAGAG 58.555 52.381 0.00 0.00 0.00 3.20
4347 5051 2.040947 TGGAAGCACAGAGAGAGAGAGA 59.959 50.000 0.00 0.00 0.00 3.10
4348 5052 2.684881 GGAAGCACAGAGAGAGAGAGAG 59.315 54.545 0.00 0.00 0.00 3.20
4468 5175 3.007614 AGCTTGCTACTCCGGTAAGAAAA 59.992 43.478 0.00 0.00 0.00 2.29
4469 5176 3.371285 GCTTGCTACTCCGGTAAGAAAAG 59.629 47.826 0.00 6.65 0.00 2.27
4470 5177 4.817517 CTTGCTACTCCGGTAAGAAAAGA 58.182 43.478 0.00 0.00 0.00 2.52
4471 5178 4.877378 TGCTACTCCGGTAAGAAAAGAA 57.123 40.909 0.00 0.00 0.00 2.52
4472 5179 5.217978 TGCTACTCCGGTAAGAAAAGAAA 57.782 39.130 0.00 0.00 0.00 2.52
4473 5180 5.235516 TGCTACTCCGGTAAGAAAAGAAAG 58.764 41.667 0.00 0.00 0.00 2.62
4511 5218 4.033684 GGTATCTCGCTGTAAACAGTACG 58.966 47.826 11.54 7.69 45.45 3.67
4512 5219 3.844577 ATCTCGCTGTAAACAGTACGT 57.155 42.857 11.54 0.00 45.45 3.57
4513 5220 4.952262 ATCTCGCTGTAAACAGTACGTA 57.048 40.909 11.54 0.00 45.45 3.57
4514 5221 4.070581 TCTCGCTGTAAACAGTACGTAC 57.929 45.455 18.10 18.10 45.45 3.67
4520 5227 4.142902 GCTGTAAACAGTACGTACTACGGA 60.143 45.833 27.72 14.40 45.03 4.69
4541 5248 2.293399 AGATCCGCGCCAATTAATTTCC 59.707 45.455 0.00 0.00 0.00 3.13
4658 5365 1.694150 CCTCACCTTGACCTTCTGTGA 59.306 52.381 0.00 0.00 34.95 3.58
4664 5371 3.199946 ACCTTGACCTTCTGTGAAACTCA 59.800 43.478 0.00 0.00 38.04 3.41
4698 5405 2.819422 TCGTTACTCGACGATTCCAG 57.181 50.000 0.00 0.00 46.09 3.86
4772 5479 2.811431 CAAAGTGCCGATCCAACACTAA 59.189 45.455 9.58 0.00 43.63 2.24
4879 5600 5.163281 ACAATCTGCTCTCTTCATGTTCT 57.837 39.130 0.00 0.00 0.00 3.01
4894 5615 4.742659 TCATGTTCTAAAACGCCAAAAAGC 59.257 37.500 0.00 0.00 38.28 3.51
4912 5633 3.492353 CCCCCATGCCCGTCTGAT 61.492 66.667 0.00 0.00 0.00 2.90
4913 5634 2.203252 CCCCATGCCCGTCTGATG 60.203 66.667 0.00 0.00 0.00 3.07
4914 5635 2.903855 CCCATGCCCGTCTGATGC 60.904 66.667 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 96 6.149308 GCCCTGATGGTTTTTCCTTTTAATTG 59.851 38.462 0.00 0.00 37.07 2.32
97 100 3.580895 GGCCCTGATGGTTTTTCCTTTTA 59.419 43.478 0.00 0.00 37.07 1.52
107 110 3.350163 CCCCTGGCCCTGATGGTT 61.350 66.667 0.00 0.00 36.04 3.67
167 170 2.649531 TGAGAGGCCTTTTTCGGAAA 57.350 45.000 6.77 0.00 0.00 3.13
193 196 4.498682 GCTTGTGACAGAAGCTGAAAATGT 60.499 41.667 25.63 0.00 42.21 2.71
342 345 4.908601 TCAGCTGTCTATTTTGGAAGGA 57.091 40.909 14.67 0.00 0.00 3.36
404 407 4.536090 TCAAAGAGGGTGATAGGAACACAT 59.464 41.667 0.00 0.00 39.65 3.21
464 467 9.125026 AGCTTAGTGAGATTTGAAAGAAAAAGA 57.875 29.630 0.00 0.00 0.00 2.52
467 470 7.721399 AGGAGCTTAGTGAGATTTGAAAGAAAA 59.279 33.333 0.00 0.00 0.00 2.29
474 479 3.452627 GGGAGGAGCTTAGTGAGATTTGA 59.547 47.826 0.00 0.00 0.00 2.69
556 561 8.303876 GCCTGGATGTCTTTTCTAAATAAAACA 58.696 33.333 0.00 0.00 0.00 2.83
557 562 8.523658 AGCCTGGATGTCTTTTCTAAATAAAAC 58.476 33.333 0.00 0.00 0.00 2.43
558 563 8.650143 AGCCTGGATGTCTTTTCTAAATAAAA 57.350 30.769 0.00 0.00 0.00 1.52
559 564 8.650143 AAGCCTGGATGTCTTTTCTAAATAAA 57.350 30.769 0.00 0.00 0.00 1.40
560 565 9.747898 TTAAGCCTGGATGTCTTTTCTAAATAA 57.252 29.630 0.00 0.00 0.00 1.40
561 566 9.920946 ATTAAGCCTGGATGTCTTTTCTAAATA 57.079 29.630 0.00 0.00 0.00 1.40
562 567 8.829373 ATTAAGCCTGGATGTCTTTTCTAAAT 57.171 30.769 0.00 0.00 0.00 1.40
563 568 9.747898 TTATTAAGCCTGGATGTCTTTTCTAAA 57.252 29.630 0.00 0.00 0.00 1.85
564 569 9.920946 ATTATTAAGCCTGGATGTCTTTTCTAA 57.079 29.630 0.00 0.00 0.00 2.10
566 571 9.343539 GTATTATTAAGCCTGGATGTCTTTTCT 57.656 33.333 0.00 0.00 0.00 2.52
567 572 9.120538 TGTATTATTAAGCCTGGATGTCTTTTC 57.879 33.333 0.00 0.00 0.00 2.29
568 573 9.646522 ATGTATTATTAAGCCTGGATGTCTTTT 57.353 29.630 0.00 0.00 0.00 2.27
569 574 9.289782 GATGTATTATTAAGCCTGGATGTCTTT 57.710 33.333 0.00 0.00 0.00 2.52
570 575 7.885399 GGATGTATTATTAAGCCTGGATGTCTT 59.115 37.037 0.00 0.00 0.00 3.01
571 576 7.017551 TGGATGTATTATTAAGCCTGGATGTCT 59.982 37.037 0.00 0.00 0.00 3.41
572 577 7.168219 TGGATGTATTATTAAGCCTGGATGTC 58.832 38.462 0.00 0.00 0.00 3.06
573 578 7.090319 TGGATGTATTATTAAGCCTGGATGT 57.910 36.000 0.00 0.00 0.00 3.06
574 579 7.011763 CGATGGATGTATTATTAAGCCTGGATG 59.988 40.741 0.00 0.00 0.00 3.51
575 580 7.050377 CGATGGATGTATTATTAAGCCTGGAT 58.950 38.462 0.00 0.00 0.00 3.41
576 581 6.406370 CGATGGATGTATTATTAAGCCTGGA 58.594 40.000 0.00 0.00 0.00 3.86
577 582 5.065218 GCGATGGATGTATTATTAAGCCTGG 59.935 44.000 0.00 0.00 0.00 4.45
578 583 5.643348 TGCGATGGATGTATTATTAAGCCTG 59.357 40.000 0.00 0.00 0.00 4.85
579 584 5.804639 TGCGATGGATGTATTATTAAGCCT 58.195 37.500 0.00 0.00 0.00 4.58
580 585 6.683974 ATGCGATGGATGTATTATTAAGCC 57.316 37.500 0.00 0.00 0.00 4.35
581 586 8.338259 CCTAATGCGATGGATGTATTATTAAGC 58.662 37.037 0.00 0.00 0.00 3.09
582 587 8.338259 GCCTAATGCGATGGATGTATTATTAAG 58.662 37.037 0.00 0.00 0.00 1.85
583 588 7.282224 GGCCTAATGCGATGGATGTATTATTAA 59.718 37.037 0.00 0.00 42.61 1.40
584 589 6.765989 GGCCTAATGCGATGGATGTATTATTA 59.234 38.462 0.00 0.00 42.61 0.98
606 611 3.638627 CAGGGAATAGAAAAGGATTGGCC 59.361 47.826 0.00 0.00 0.00 5.36
617 622 1.860641 TCAGCCGTCAGGGAATAGAA 58.139 50.000 0.00 0.00 38.47 2.10
626 645 3.857854 GTGCGCATCAGCCGTCAG 61.858 66.667 15.91 0.00 37.52 3.51
641 660 3.465871 CAACCCAGGGAACAAAAATGTG 58.534 45.455 14.54 0.00 0.00 3.21
643 662 2.810032 GCCAACCCAGGGAACAAAAATG 60.810 50.000 14.54 0.00 0.00 2.32
644 663 1.419762 GCCAACCCAGGGAACAAAAAT 59.580 47.619 14.54 0.00 0.00 1.82
713 734 2.159572 AGTTTGGACGCGAATATTGTGC 60.160 45.455 15.93 0.00 0.00 4.57
789 810 1.739049 GCCACCGAGGAGAGAGATG 59.261 63.158 0.00 0.00 41.22 2.90
816 837 5.473504 GTGGGTATATGTATGCAAGGAAAGG 59.526 44.000 0.00 0.00 0.00 3.11
817 838 5.179368 CGTGGGTATATGTATGCAAGGAAAG 59.821 44.000 0.00 0.00 0.00 2.62
861 883 2.544685 CGCAGGGAGTCTCAGTTATTG 58.455 52.381 1.47 0.00 0.00 1.90
863 885 0.461961 GCGCAGGGAGTCTCAGTTAT 59.538 55.000 0.30 0.00 0.00 1.89
939 961 3.341469 TAATGGCCGGGGGAGGAGT 62.341 63.158 2.18 0.00 0.00 3.85
1372 1439 4.070552 GAAGTCGCCGCCTCCAGT 62.071 66.667 0.00 0.00 0.00 4.00
1450 1517 0.949105 CCGAGAAACCCTGTGTTCCG 60.949 60.000 0.00 0.00 35.67 4.30
1968 2038 2.379907 TGGCATTCCCTTCTTCTTTCCT 59.620 45.455 0.00 0.00 0.00 3.36
1971 2041 2.174360 GCTGGCATTCCCTTCTTCTTT 58.826 47.619 0.00 0.00 0.00 2.52
2013 2083 1.232621 TGAGCTTCTTCCGACGACGA 61.233 55.000 9.28 0.00 42.66 4.20
2151 2224 4.819630 CCTACTCAACCTAAACACAAGCAA 59.180 41.667 0.00 0.00 0.00 3.91
2180 2253 4.440880 TGCATATGGCCATAAACTTTTGC 58.559 39.130 28.28 28.28 43.89 3.68
2181 2254 5.403166 CGATGCATATGGCCATAAACTTTTG 59.597 40.000 28.75 20.92 43.89 2.44
2182 2255 5.068987 ACGATGCATATGGCCATAAACTTTT 59.931 36.000 28.75 9.02 43.89 2.27
2183 2256 4.584325 ACGATGCATATGGCCATAAACTTT 59.416 37.500 28.75 9.80 43.89 2.66
2184 2257 4.144297 ACGATGCATATGGCCATAAACTT 58.856 39.130 28.75 19.87 43.89 2.66
2185 2258 3.754965 ACGATGCATATGGCCATAAACT 58.245 40.909 28.75 10.59 43.89 2.66
2186 2259 4.216257 AGAACGATGCATATGGCCATAAAC 59.784 41.667 28.75 22.32 43.89 2.01
2187 2260 4.216042 CAGAACGATGCATATGGCCATAAA 59.784 41.667 28.75 17.46 43.89 1.40
2188 2261 3.752747 CAGAACGATGCATATGGCCATAA 59.247 43.478 28.75 13.68 43.89 1.90
2189 2262 3.007831 TCAGAACGATGCATATGGCCATA 59.992 43.478 27.36 27.36 43.89 2.74
2190 2263 2.156917 CAGAACGATGCATATGGCCAT 58.843 47.619 24.45 24.45 43.89 4.40
2191 2264 1.140652 TCAGAACGATGCATATGGCCA 59.859 47.619 8.56 8.56 43.89 5.36
2192 2265 1.882912 TCAGAACGATGCATATGGCC 58.117 50.000 0.00 0.00 43.89 5.36
2193 2266 3.466712 CATCAGAACGATGCATATGGC 57.533 47.619 0.00 0.00 44.95 4.40
2202 2275 0.529337 CGCCTCTGCATCAGAACGAT 60.529 55.000 11.25 0.00 40.18 3.73
2203 2276 1.153765 CGCCTCTGCATCAGAACGA 60.154 57.895 11.25 0.00 40.18 3.85
2204 2277 2.169789 CCGCCTCTGCATCAGAACG 61.170 63.158 10.24 10.24 40.18 3.95
2205 2278 1.817099 CCCGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
2206 2279 2.586245 CCCGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
2207 2280 3.473647 CCCCGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
2208 2281 4.559063 CCCCCGCCTCTGCATCAG 62.559 72.222 0.00 0.00 37.32 2.90
2224 2297 2.361230 CGAAAAGGGGGTCAGGCC 60.361 66.667 0.00 0.00 0.00 5.19
2225 2298 0.538746 TTTCGAAAAGGGGGTCAGGC 60.539 55.000 8.44 0.00 0.00 4.85
2226 2299 1.989706 TTTTCGAAAAGGGGGTCAGG 58.010 50.000 19.08 0.00 0.00 3.86
2245 2318 7.255486 CGAATCAAAGAGTCCCTAAACCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
2246 2319 6.206829 CGAATCAAAGAGTCCCTAAACCTTTT 59.793 38.462 0.00 0.00 0.00 2.27
2247 2320 5.705905 CGAATCAAAGAGTCCCTAAACCTTT 59.294 40.000 0.00 0.00 0.00 3.11
2248 2321 5.221864 ACGAATCAAAGAGTCCCTAAACCTT 60.222 40.000 0.00 0.00 0.00 3.50
2249 2322 4.286291 ACGAATCAAAGAGTCCCTAAACCT 59.714 41.667 0.00 0.00 0.00 3.50
2250 2323 4.576879 ACGAATCAAAGAGTCCCTAAACC 58.423 43.478 0.00 0.00 0.00 3.27
2251 2324 5.811100 CCTACGAATCAAAGAGTCCCTAAAC 59.189 44.000 0.00 0.00 0.00 2.01
2252 2325 5.718130 TCCTACGAATCAAAGAGTCCCTAAA 59.282 40.000 0.00 0.00 0.00 1.85
2253 2326 5.266788 TCCTACGAATCAAAGAGTCCCTAA 58.733 41.667 0.00 0.00 0.00 2.69
2254 2327 4.863548 TCCTACGAATCAAAGAGTCCCTA 58.136 43.478 0.00 0.00 0.00 3.53
2255 2328 3.709587 TCCTACGAATCAAAGAGTCCCT 58.290 45.455 0.00 0.00 0.00 4.20
2256 2329 4.674281 ATCCTACGAATCAAAGAGTCCC 57.326 45.455 0.00 0.00 0.00 4.46
2257 2330 5.524281 GGAAATCCTACGAATCAAAGAGTCC 59.476 44.000 0.00 0.00 0.00 3.85
2258 2331 5.524281 GGGAAATCCTACGAATCAAAGAGTC 59.476 44.000 0.00 0.00 35.95 3.36
2259 2332 5.045869 TGGGAAATCCTACGAATCAAAGAGT 60.046 40.000 0.00 0.00 36.20 3.24
2260 2333 5.428253 TGGGAAATCCTACGAATCAAAGAG 58.572 41.667 0.00 0.00 36.20 2.85
2261 2334 5.429681 TGGGAAATCCTACGAATCAAAGA 57.570 39.130 0.00 0.00 36.20 2.52
2262 2335 6.509418 TTTGGGAAATCCTACGAATCAAAG 57.491 37.500 0.00 0.00 36.20 2.77
2263 2336 6.627065 GCATTTGGGAAATCCTACGAATCAAA 60.627 38.462 0.00 0.57 36.20 2.69
2264 2337 5.163561 GCATTTGGGAAATCCTACGAATCAA 60.164 40.000 0.00 0.00 36.20 2.57
2265 2338 4.338118 GCATTTGGGAAATCCTACGAATCA 59.662 41.667 0.00 0.00 36.20 2.57
2266 2339 4.338118 TGCATTTGGGAAATCCTACGAATC 59.662 41.667 0.00 0.00 36.20 2.52
2267 2340 4.277476 TGCATTTGGGAAATCCTACGAAT 58.723 39.130 0.00 0.00 36.20 3.34
2268 2341 3.691575 TGCATTTGGGAAATCCTACGAA 58.308 40.909 0.00 0.00 36.20 3.85
2269 2342 3.278574 CTGCATTTGGGAAATCCTACGA 58.721 45.455 0.00 0.00 36.20 3.43
2270 2343 2.358898 CCTGCATTTGGGAAATCCTACG 59.641 50.000 0.00 0.00 36.20 3.51
2271 2344 3.631250 TCCTGCATTTGGGAAATCCTAC 58.369 45.455 0.00 0.00 36.20 3.18
2272 2345 4.329638 TTCCTGCATTTGGGAAATCCTA 57.670 40.909 2.79 0.00 38.49 2.94
2273 2346 2.925966 TCCTGCATTTGGGAAATCCT 57.074 45.000 0.00 0.00 36.20 3.24
2274 2347 4.039609 CCTATTCCTGCATTTGGGAAATCC 59.960 45.833 9.02 0.00 43.62 3.01
2275 2348 4.895297 TCCTATTCCTGCATTTGGGAAATC 59.105 41.667 9.02 0.00 43.62 2.17
2276 2349 4.882559 TCCTATTCCTGCATTTGGGAAAT 58.117 39.130 9.02 2.19 43.62 2.17
2277 2350 4.329638 TCCTATTCCTGCATTTGGGAAA 57.670 40.909 9.02 0.00 43.62 3.13
2278 2351 4.329638 TTCCTATTCCTGCATTTGGGAA 57.670 40.909 7.53 7.53 44.37 3.97
2279 2352 4.329638 TTTCCTATTCCTGCATTTGGGA 57.670 40.909 0.00 0.00 0.00 4.37
2280 2353 5.178061 GTTTTTCCTATTCCTGCATTTGGG 58.822 41.667 0.00 0.00 0.00 4.12
2281 2354 4.864247 CGTTTTTCCTATTCCTGCATTTGG 59.136 41.667 0.00 0.00 0.00 3.28
2282 2355 5.345741 CACGTTTTTCCTATTCCTGCATTTG 59.654 40.000 0.00 0.00 0.00 2.32
2283 2356 5.469479 CACGTTTTTCCTATTCCTGCATTT 58.531 37.500 0.00 0.00 0.00 2.32
2284 2357 4.082245 CCACGTTTTTCCTATTCCTGCATT 60.082 41.667 0.00 0.00 0.00 3.56
2285 2358 3.443681 CCACGTTTTTCCTATTCCTGCAT 59.556 43.478 0.00 0.00 0.00 3.96
2286 2359 2.817258 CCACGTTTTTCCTATTCCTGCA 59.183 45.455 0.00 0.00 0.00 4.41
2287 2360 2.163613 CCCACGTTTTTCCTATTCCTGC 59.836 50.000 0.00 0.00 0.00 4.85
2288 2361 3.681593 TCCCACGTTTTTCCTATTCCTG 58.318 45.455 0.00 0.00 0.00 3.86
2289 2362 4.586306 ATCCCACGTTTTTCCTATTCCT 57.414 40.909 0.00 0.00 0.00 3.36
2290 2363 4.142249 CCAATCCCACGTTTTTCCTATTCC 60.142 45.833 0.00 0.00 0.00 3.01
2291 2364 4.703093 TCCAATCCCACGTTTTTCCTATTC 59.297 41.667 0.00 0.00 0.00 1.75
2292 2365 4.668636 TCCAATCCCACGTTTTTCCTATT 58.331 39.130 0.00 0.00 0.00 1.73
2293 2366 4.310022 TCCAATCCCACGTTTTTCCTAT 57.690 40.909 0.00 0.00 0.00 2.57
2294 2367 3.791953 TCCAATCCCACGTTTTTCCTA 57.208 42.857 0.00 0.00 0.00 2.94
2295 2368 2.668144 TCCAATCCCACGTTTTTCCT 57.332 45.000 0.00 0.00 0.00 3.36
2296 2369 3.584834 CATTCCAATCCCACGTTTTTCC 58.415 45.455 0.00 0.00 0.00 3.13
2297 2370 3.584834 CCATTCCAATCCCACGTTTTTC 58.415 45.455 0.00 0.00 0.00 2.29
2298 2371 2.289382 GCCATTCCAATCCCACGTTTTT 60.289 45.455 0.00 0.00 0.00 1.94
2299 2372 1.275010 GCCATTCCAATCCCACGTTTT 59.725 47.619 0.00 0.00 0.00 2.43
2300 2373 0.894835 GCCATTCCAATCCCACGTTT 59.105 50.000 0.00 0.00 0.00 3.60
2301 2374 0.251564 TGCCATTCCAATCCCACGTT 60.252 50.000 0.00 0.00 0.00 3.99
2302 2375 0.033208 ATGCCATTCCAATCCCACGT 60.033 50.000 0.00 0.00 0.00 4.49
2303 2376 0.386476 CATGCCATTCCAATCCCACG 59.614 55.000 0.00 0.00 0.00 4.94
2304 2377 1.410153 GACATGCCATTCCAATCCCAC 59.590 52.381 0.00 0.00 0.00 4.61
2305 2378 1.006878 TGACATGCCATTCCAATCCCA 59.993 47.619 0.00 0.00 0.00 4.37
2306 2379 1.779221 TGACATGCCATTCCAATCCC 58.221 50.000 0.00 0.00 0.00 3.85
2307 2380 3.228453 AGATGACATGCCATTCCAATCC 58.772 45.455 0.00 0.00 0.00 3.01
2308 2381 4.340097 TCAAGATGACATGCCATTCCAATC 59.660 41.667 0.00 0.00 0.00 2.67
2309 2382 4.283337 TCAAGATGACATGCCATTCCAAT 58.717 39.130 0.00 0.00 0.00 3.16
2310 2383 3.699413 TCAAGATGACATGCCATTCCAA 58.301 40.909 0.00 0.00 0.00 3.53
2311 2384 3.369242 TCAAGATGACATGCCATTCCA 57.631 42.857 0.00 0.00 0.00 3.53
2312 2385 4.931661 ATTCAAGATGACATGCCATTCC 57.068 40.909 0.00 0.00 0.00 3.01
2313 2386 6.145338 AGAATTCAAGATGACATGCCATTC 57.855 37.500 8.44 0.00 0.00 2.67
2314 2387 6.604396 TGTAGAATTCAAGATGACATGCCATT 59.396 34.615 8.44 0.00 0.00 3.16
2315 2388 6.124340 TGTAGAATTCAAGATGACATGCCAT 58.876 36.000 8.44 0.00 0.00 4.40
2316 2389 5.499313 TGTAGAATTCAAGATGACATGCCA 58.501 37.500 8.44 0.00 0.00 4.92
2317 2390 6.261603 TCATGTAGAATTCAAGATGACATGCC 59.738 38.462 18.63 0.00 41.43 4.40
2318 2391 7.255491 TCATGTAGAATTCAAGATGACATGC 57.745 36.000 18.63 0.00 41.43 4.06
2319 2392 9.665264 CAATCATGTAGAATTCAAGATGACATG 57.335 33.333 8.44 14.87 42.48 3.21
2320 2393 9.404848 ACAATCATGTAGAATTCAAGATGACAT 57.595 29.630 8.44 4.61 38.24 3.06
2321 2394 8.797350 ACAATCATGTAGAATTCAAGATGACA 57.203 30.769 8.44 2.49 38.24 3.58
2328 2401 9.671279 ACACTCATACAATCATGTAGAATTCAA 57.329 29.630 8.44 0.00 44.85 2.69
2329 2402 9.671279 AACACTCATACAATCATGTAGAATTCA 57.329 29.630 8.44 0.00 44.85 2.57
2332 2405 9.671279 TCAAACACTCATACAATCATGTAGAAT 57.329 29.630 0.00 0.00 44.85 2.40
2333 2406 9.671279 ATCAAACACTCATACAATCATGTAGAA 57.329 29.630 0.00 0.00 44.85 2.10
2334 2407 9.671279 AATCAAACACTCATACAATCATGTAGA 57.329 29.630 0.00 0.00 44.85 2.59
2335 2408 9.712359 CAATCAAACACTCATACAATCATGTAG 57.288 33.333 0.00 0.00 44.85 2.74
2336 2409 9.230122 ACAATCAAACACTCATACAATCATGTA 57.770 29.630 0.00 0.00 45.67 2.29
2337 2410 8.024865 CACAATCAAACACTCATACAATCATGT 58.975 33.333 0.00 0.00 43.74 3.21
2338 2411 7.008901 GCACAATCAAACACTCATACAATCATG 59.991 37.037 0.00 0.00 0.00 3.07
2339 2412 7.031372 GCACAATCAAACACTCATACAATCAT 58.969 34.615 0.00 0.00 0.00 2.45
2340 2413 6.016443 TGCACAATCAAACACTCATACAATCA 60.016 34.615 0.00 0.00 0.00 2.57
2341 2414 6.380995 TGCACAATCAAACACTCATACAATC 58.619 36.000 0.00 0.00 0.00 2.67
2342 2415 6.330004 TGCACAATCAAACACTCATACAAT 57.670 33.333 0.00 0.00 0.00 2.71
2343 2416 5.764487 TGCACAATCAAACACTCATACAA 57.236 34.783 0.00 0.00 0.00 2.41
2344 2417 5.963176 ATGCACAATCAAACACTCATACA 57.037 34.783 0.00 0.00 0.00 2.29
2345 2418 7.751732 TCTTATGCACAATCAAACACTCATAC 58.248 34.615 0.00 0.00 0.00 2.39
2346 2419 7.920160 TCTTATGCACAATCAAACACTCATA 57.080 32.000 0.00 0.00 0.00 2.15
2347 2420 6.822667 TCTTATGCACAATCAAACACTCAT 57.177 33.333 0.00 0.00 0.00 2.90
2348 2421 6.631971 TTCTTATGCACAATCAAACACTCA 57.368 33.333 0.00 0.00 0.00 3.41
2349 2422 7.928908 TTTTCTTATGCACAATCAAACACTC 57.071 32.000 0.00 0.00 0.00 3.51
2350 2423 7.043458 CGTTTTTCTTATGCACAATCAAACACT 60.043 33.333 0.00 0.00 0.00 3.55
2351 2424 7.056800 CGTTTTTCTTATGCACAATCAAACAC 58.943 34.615 0.00 0.00 0.00 3.32
2352 2425 6.754209 ACGTTTTTCTTATGCACAATCAAACA 59.246 30.769 0.00 0.00 0.00 2.83
2353 2426 7.160633 ACGTTTTTCTTATGCACAATCAAAC 57.839 32.000 0.00 0.00 0.00 2.93
2354 2427 7.593273 CCTACGTTTTTCTTATGCACAATCAAA 59.407 33.333 0.00 0.00 0.00 2.69
2355 2428 7.041030 TCCTACGTTTTTCTTATGCACAATCAA 60.041 33.333 0.00 0.00 0.00 2.57
2356 2429 6.428465 TCCTACGTTTTTCTTATGCACAATCA 59.572 34.615 0.00 0.00 0.00 2.57
2357 2430 6.837992 TCCTACGTTTTTCTTATGCACAATC 58.162 36.000 0.00 0.00 0.00 2.67
2358 2431 6.811253 TCCTACGTTTTTCTTATGCACAAT 57.189 33.333 0.00 0.00 0.00 2.71
2359 2432 6.811253 ATCCTACGTTTTTCTTATGCACAA 57.189 33.333 0.00 0.00 0.00 3.33
2360 2433 6.653320 AGAATCCTACGTTTTTCTTATGCACA 59.347 34.615 0.00 0.00 0.00 4.57
2361 2434 7.073342 AGAATCCTACGTTTTTCTTATGCAC 57.927 36.000 0.00 0.00 0.00 4.57
2362 2435 7.681939 AAGAATCCTACGTTTTTCTTATGCA 57.318 32.000 0.00 0.00 36.82 3.96
2363 2436 8.234546 TGAAAGAATCCTACGTTTTTCTTATGC 58.765 33.333 0.00 0.00 37.42 3.14
2367 2440 8.899771 TCTTTGAAAGAATCCTACGTTTTTCTT 58.100 29.630 4.94 1.09 39.45 2.52
2368 2441 8.446599 TCTTTGAAAGAATCCTACGTTTTTCT 57.553 30.769 4.94 0.00 33.83 2.52
2369 2442 7.803659 CCTCTTTGAAAGAATCCTACGTTTTTC 59.196 37.037 9.15 0.00 37.02 2.29
2370 2443 7.284716 ACCTCTTTGAAAGAATCCTACGTTTTT 59.715 33.333 9.15 0.00 37.02 1.94
2371 2444 6.771267 ACCTCTTTGAAAGAATCCTACGTTTT 59.229 34.615 9.15 0.00 37.02 2.43
2372 2445 6.296803 ACCTCTTTGAAAGAATCCTACGTTT 58.703 36.000 9.15 0.00 37.02 3.60
2373 2446 5.866207 ACCTCTTTGAAAGAATCCTACGTT 58.134 37.500 9.15 0.00 37.02 3.99
2374 2447 5.485209 ACCTCTTTGAAAGAATCCTACGT 57.515 39.130 9.15 0.00 37.02 3.57
2375 2448 6.426937 TCAAACCTCTTTGAAAGAATCCTACG 59.573 38.462 9.15 0.00 42.34 3.51
2376 2449 7.445707 ACTCAAACCTCTTTGAAAGAATCCTAC 59.554 37.037 9.15 0.00 44.18 3.18
2377 2450 7.445402 CACTCAAACCTCTTTGAAAGAATCCTA 59.555 37.037 9.15 0.00 44.18 2.94
2378 2451 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
2379 2452 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
2380 2453 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
2381 2454 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
2382 2455 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
2383 2456 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
2384 2457 5.278660 CCATCCACTCAAACCTCTTTGAAAG 60.279 44.000 0.00 0.00 44.18 2.62
2385 2458 4.584325 CCATCCACTCAAACCTCTTTGAAA 59.416 41.667 0.00 0.00 44.18 2.69
2386 2459 4.141274 TCCATCCACTCAAACCTCTTTGAA 60.141 41.667 0.00 0.00 44.18 2.69
2387 2460 3.394274 TCCATCCACTCAAACCTCTTTGA 59.606 43.478 0.00 0.00 42.93 2.69
2388 2461 3.754965 TCCATCCACTCAAACCTCTTTG 58.245 45.455 0.00 0.00 38.56 2.77
2389 2462 4.453480 TTCCATCCACTCAAACCTCTTT 57.547 40.909 0.00 0.00 0.00 2.52
2390 2463 4.453480 TTTCCATCCACTCAAACCTCTT 57.547 40.909 0.00 0.00 0.00 2.85
2391 2464 4.453480 TTTTCCATCCACTCAAACCTCT 57.547 40.909 0.00 0.00 0.00 3.69
2392 2465 5.728637 AATTTTCCATCCACTCAAACCTC 57.271 39.130 0.00 0.00 0.00 3.85
2393 2466 6.101650 GAAATTTTCCATCCACTCAAACCT 57.898 37.500 0.00 0.00 0.00 3.50
2422 2495 9.866655 TCCATAGGATTTATTTGCACTAGATTT 57.133 29.630 0.00 0.00 0.00 2.17
2423 2496 9.866655 TTCCATAGGATTTATTTGCACTAGATT 57.133 29.630 0.00 0.00 0.00 2.40
2424 2497 9.866655 TTTCCATAGGATTTATTTGCACTAGAT 57.133 29.630 0.00 0.00 0.00 1.98
2425 2498 9.693739 TTTTCCATAGGATTTATTTGCACTAGA 57.306 29.630 0.00 0.00 0.00 2.43
2456 2529 6.267817 TGATTCGTAGGATTGTAAACCGTAG 58.732 40.000 0.00 0.00 0.00 3.51
2457 2530 6.206395 TGATTCGTAGGATTGTAAACCGTA 57.794 37.500 0.00 0.00 0.00 4.02
2458 2531 5.075858 TGATTCGTAGGATTGTAAACCGT 57.924 39.130 0.00 0.00 0.00 4.83
2459 2532 6.128499 TGTTTGATTCGTAGGATTGTAAACCG 60.128 38.462 0.00 0.00 0.00 4.44
2460 2533 7.136289 TGTTTGATTCGTAGGATTGTAAACC 57.864 36.000 0.00 0.00 0.00 3.27
2461 2534 7.536281 GGTTGTTTGATTCGTAGGATTGTAAAC 59.464 37.037 0.00 0.00 0.00 2.01
2462 2535 7.308710 GGGTTGTTTGATTCGTAGGATTGTAAA 60.309 37.037 0.00 0.00 0.00 2.01
2463 2536 6.149807 GGGTTGTTTGATTCGTAGGATTGTAA 59.850 38.462 0.00 0.00 0.00 2.41
2464 2537 5.644636 GGGTTGTTTGATTCGTAGGATTGTA 59.355 40.000 0.00 0.00 0.00 2.41
2465 2538 4.457949 GGGTTGTTTGATTCGTAGGATTGT 59.542 41.667 0.00 0.00 0.00 2.71
2466 2539 4.457603 TGGGTTGTTTGATTCGTAGGATTG 59.542 41.667 0.00 0.00 0.00 2.67
2467 2540 4.457949 GTGGGTTGTTTGATTCGTAGGATT 59.542 41.667 0.00 0.00 0.00 3.01
2468 2541 4.007659 GTGGGTTGTTTGATTCGTAGGAT 58.992 43.478 0.00 0.00 0.00 3.24
2469 2542 3.404899 GTGGGTTGTTTGATTCGTAGGA 58.595 45.455 0.00 0.00 0.00 2.94
2470 2543 2.158841 CGTGGGTTGTTTGATTCGTAGG 59.841 50.000 0.00 0.00 0.00 3.18
2471 2544 2.803956 ACGTGGGTTGTTTGATTCGTAG 59.196 45.455 0.00 0.00 0.00 3.51
2472 2545 2.836262 ACGTGGGTTGTTTGATTCGTA 58.164 42.857 0.00 0.00 0.00 3.43
2473 2546 1.670791 ACGTGGGTTGTTTGATTCGT 58.329 45.000 0.00 0.00 0.00 3.85
2474 2547 2.158841 CCTACGTGGGTTGTTTGATTCG 59.841 50.000 10.29 0.00 0.00 3.34
2475 2548 3.404899 TCCTACGTGGGTTGTTTGATTC 58.595 45.455 18.36 0.00 36.20 2.52
2476 2549 3.495434 TCCTACGTGGGTTGTTTGATT 57.505 42.857 18.36 0.00 36.20 2.57
2477 2550 3.495434 TTCCTACGTGGGTTGTTTGAT 57.505 42.857 18.36 0.00 36.20 2.57
2478 2551 3.278668 TTTCCTACGTGGGTTGTTTGA 57.721 42.857 18.36 0.00 36.20 2.69
2479 2552 4.373348 TTTTTCCTACGTGGGTTGTTTG 57.627 40.909 18.36 0.00 36.20 2.93
2522 2595 8.891671 TTCAAAGGATTCTCAAAGGAATTTTG 57.108 30.769 0.00 0.00 46.09 2.44
2523 2596 9.716531 GATTCAAAGGATTCTCAAAGGAATTTT 57.283 29.630 0.00 0.00 36.24 1.82
2524 2597 8.873144 TGATTCAAAGGATTCTCAAAGGAATTT 58.127 29.630 0.00 0.00 36.24 1.82
2525 2598 8.426569 TGATTCAAAGGATTCTCAAAGGAATT 57.573 30.769 0.00 0.00 36.24 2.17
2526 2599 8.426569 TTGATTCAAAGGATTCTCAAAGGAAT 57.573 30.769 0.00 0.00 38.47 3.01
2527 2600 7.838079 TTGATTCAAAGGATTCTCAAAGGAA 57.162 32.000 0.00 0.00 0.00 3.36
2528 2601 7.838079 TTTGATTCAAAGGATTCTCAAAGGA 57.162 32.000 7.74 0.00 31.21 3.36
2542 2615 5.304101 TGCTTAAGGGCTTCTTTGATTCAAA 59.696 36.000 11.19 11.19 36.93 2.69
2543 2616 4.832266 TGCTTAAGGGCTTCTTTGATTCAA 59.168 37.500 4.29 0.00 36.93 2.69
2544 2617 4.406456 TGCTTAAGGGCTTCTTTGATTCA 58.594 39.130 4.29 0.00 36.93 2.57
2545 2618 5.391312 TTGCTTAAGGGCTTCTTTGATTC 57.609 39.130 4.29 0.00 36.93 2.52
2546 2619 6.364568 AATTGCTTAAGGGCTTCTTTGATT 57.635 33.333 4.29 0.00 36.93 2.57
2547 2620 6.364568 AAATTGCTTAAGGGCTTCTTTGAT 57.635 33.333 4.29 0.00 36.93 2.57
2548 2621 5.806654 AAATTGCTTAAGGGCTTCTTTGA 57.193 34.783 4.29 0.00 36.93 2.69
2549 2622 6.232139 CAAAATTGCTTAAGGGCTTCTTTG 57.768 37.500 4.29 0.47 36.93 2.77
2592 2665 5.879223 AGACAACCAAAATGCACAAAATTCA 59.121 32.000 0.00 0.00 0.00 2.57
2638 2711 8.627403 ACATCTAAGATAACATTTGCTGGAATG 58.373 33.333 6.52 6.52 41.64 2.67
2667 2740 3.016736 CACGCCAAATAGGGAGAACATT 58.983 45.455 0.00 0.00 38.09 2.71
2668 2741 2.643551 CACGCCAAATAGGGAGAACAT 58.356 47.619 0.00 0.00 38.09 2.71
2685 2768 9.325150 CCTAAAAATATTACAATTATCGCCACG 57.675 33.333 0.00 0.00 0.00 4.94
2716 2800 6.270695 TCAGGCAATCAGATACTCCATGATAA 59.729 38.462 0.00 0.00 33.40 1.75
2729 2813 5.901413 ATCTAATTCCTCAGGCAATCAGA 57.099 39.130 0.00 0.00 0.00 3.27
2809 2901 0.689055 ACATGAGGCAGCAGAGACAA 59.311 50.000 0.00 0.00 0.00 3.18
2925 3017 4.067972 TCCACAACTCTACACAGAAACC 57.932 45.455 0.00 0.00 0.00 3.27
2930 3022 2.738846 GTGCATCCACAACTCTACACAG 59.261 50.000 0.00 0.00 41.67 3.66
2960 3060 9.860898 GGCTTAAATTTCTATGACACATTCTTT 57.139 29.630 0.00 0.00 0.00 2.52
3151 3251 4.910195 AGTTGGTGAATTGTATGCAGAGA 58.090 39.130 0.00 0.00 0.00 3.10
3152 3252 6.539826 TGATAGTTGGTGAATTGTATGCAGAG 59.460 38.462 0.00 0.00 0.00 3.35
3161 3847 8.503458 AGAGAGAAATGATAGTTGGTGAATTG 57.497 34.615 0.00 0.00 0.00 2.32
3248 3934 1.262824 CGATCGCGTCACCGAGAATC 61.263 60.000 5.77 0.00 45.86 2.52
3300 3986 7.013464 GGATGATTCAAGCTCATTCTGAAGATT 59.987 37.037 4.27 0.00 33.56 2.40
3372 4058 2.737376 GGGCAACGTCGGAGTCAC 60.737 66.667 0.00 0.00 37.60 3.67
3496 4182 3.433615 CGTCAAGGTCTGAATTTCCTGAC 59.566 47.826 9.70 9.70 35.22 3.51
3540 4226 1.372307 CTTTTGCAAGCCAAGGGGG 59.628 57.895 0.00 0.00 40.85 5.40
3903 4590 1.107538 CCTCCTACATCGCGGGAAGA 61.108 60.000 11.91 1.19 0.00 2.87
3904 4591 1.364171 CCTCCTACATCGCGGGAAG 59.636 63.158 6.13 4.38 0.00 3.46
3905 4592 2.131709 CCCTCCTACATCGCGGGAA 61.132 63.158 6.13 0.00 37.05 3.97
3918 4605 4.179599 CCCTCCCTCCCTCCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
3919 4606 4.179599 CCCCTCCCTCCCTCCCTC 62.180 77.778 0.00 0.00 0.00 4.30
3943 4634 1.661341 CACTATCCTCTGCACTTGGC 58.339 55.000 0.00 0.00 45.13 4.52
4009 4700 1.208293 CCAAGGTGAGGTAGCTTCTCC 59.792 57.143 12.38 5.78 44.89 3.71
4029 4720 1.281287 GGGAAGGGGTTTCAGACTACC 59.719 57.143 0.00 0.00 37.54 3.18
4041 4732 0.331616 AAATCGGTTCTGGGAAGGGG 59.668 55.000 0.00 0.00 0.00 4.79
4042 4733 3.136626 AGATAAATCGGTTCTGGGAAGGG 59.863 47.826 0.00 0.00 0.00 3.95
4056 4747 7.168469 GGACTCTAAAAGACTCGCAGATAAATC 59.832 40.741 0.00 0.00 33.89 2.17
4156 4847 5.173673 TCGTTCAAACTTACACACGATGTAC 59.826 40.000 4.17 0.00 43.71 2.90
4244 4936 3.380004 ACAAAGACGCCAGAAAAACATCA 59.620 39.130 0.00 0.00 0.00 3.07
4263 4955 1.674764 CCAAGCCACAGCAACCACAA 61.675 55.000 0.00 0.00 43.56 3.33
4309 5001 3.500448 TCCAATAACTGACCTGCACAA 57.500 42.857 0.00 0.00 0.00 3.33
4341 5045 0.399454 TTTGCCTGCTTGCTCTCTCT 59.601 50.000 0.00 0.00 0.00 3.10
4342 5046 1.199558 CTTTTGCCTGCTTGCTCTCTC 59.800 52.381 0.00 0.00 0.00 3.20
4343 5047 1.245732 CTTTTGCCTGCTTGCTCTCT 58.754 50.000 0.00 0.00 0.00 3.10
4344 5048 0.957362 ACTTTTGCCTGCTTGCTCTC 59.043 50.000 0.00 0.00 0.00 3.20
4345 5049 0.672342 CACTTTTGCCTGCTTGCTCT 59.328 50.000 0.00 0.00 0.00 4.09
4346 5050 0.319297 CCACTTTTGCCTGCTTGCTC 60.319 55.000 0.00 0.00 0.00 4.26
4347 5051 1.044790 ACCACTTTTGCCTGCTTGCT 61.045 50.000 0.00 0.00 0.00 3.91
4348 5052 0.598419 GACCACTTTTGCCTGCTTGC 60.598 55.000 0.00 0.00 0.00 4.01
4468 5175 1.349357 GGCTGTTGGTCCTCTCTTTCT 59.651 52.381 0.00 0.00 0.00 2.52
4469 5176 1.814793 GGCTGTTGGTCCTCTCTTTC 58.185 55.000 0.00 0.00 0.00 2.62
4470 5177 0.035458 CGGCTGTTGGTCCTCTCTTT 59.965 55.000 0.00 0.00 0.00 2.52
4471 5178 1.674057 CGGCTGTTGGTCCTCTCTT 59.326 57.895 0.00 0.00 0.00 2.85
4472 5179 2.286523 CCGGCTGTTGGTCCTCTCT 61.287 63.158 0.00 0.00 0.00 3.10
4473 5180 1.255667 TACCGGCTGTTGGTCCTCTC 61.256 60.000 0.00 0.00 40.96 3.20
4520 5227 2.293399 GGAAATTAATTGGCGCGGATCT 59.707 45.455 8.83 0.00 0.00 2.75
4541 5248 1.798735 CAGTCTTTGCCATGCCTCG 59.201 57.895 0.00 0.00 0.00 4.63
4658 5365 6.788243 ACGAGTTTATTTTCGGTTTGAGTTT 58.212 32.000 0.00 0.00 40.93 2.66
4664 5371 6.420604 TCGAGTAACGAGTTTATTTTCGGTTT 59.579 34.615 0.00 0.00 46.45 3.27
4698 5405 3.714391 AGGAACAAGTAACGAGTGACAC 58.286 45.455 0.00 0.00 0.00 3.67
4772 5479 4.226168 CCTTTGGAGGGTTCTAGTCTTGAT 59.774 45.833 0.00 0.00 39.55 2.57
4818 5535 7.377766 TGTCCATAATTTTTAGTGTGAGCTC 57.622 36.000 6.82 6.82 0.00 4.09
4852 5573 6.222389 ACATGAAGAGAGCAGATTGTATAGC 58.778 40.000 0.00 0.00 0.00 2.97
4858 5579 7.606858 TTTAGAACATGAAGAGAGCAGATTG 57.393 36.000 0.00 0.00 0.00 2.67
4861 5582 5.635280 CGTTTTAGAACATGAAGAGAGCAGA 59.365 40.000 0.00 0.00 35.44 4.26
4879 5600 0.393448 GGGGGCTTTTTGGCGTTTTA 59.607 50.000 0.00 0.00 42.84 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.