Multiple sequence alignment - TraesCS7A01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G311200 chr7A 100.000 5077 0 0 1 5077 440691162 440696238 0.000000e+00 9376
1 TraesCS7A01G311200 chr7D 95.767 3307 97 13 538 3828 390021666 390024945 0.000000e+00 5291
2 TraesCS7A01G311200 chr7D 91.216 592 41 11 3807 4395 390024969 390025552 0.000000e+00 795
3 TraesCS7A01G311200 chr7D 88.587 552 34 11 1 531 390020430 390020973 1.190000e-180 643
4 TraesCS7A01G311200 chr7D 91.083 157 13 1 4717 4872 390025553 390025709 1.430000e-50 211
5 TraesCS7A01G311200 chr7D 85.926 135 11 6 4943 5077 390060725 390060851 2.470000e-28 137
6 TraesCS7A01G311200 chr7B 97.547 2079 50 1 793 2871 385064673 385066750 0.000000e+00 3555
7 TraesCS7A01G311200 chr7B 97.510 964 20 2 2869 3828 385066873 385067836 0.000000e+00 1644
8 TraesCS7A01G311200 chr7B 94.730 816 27 4 1 805 385063572 385064382 0.000000e+00 1254
9 TraesCS7A01G311200 chr7B 89.447 597 46 15 3807 4395 385067860 385068447 0.000000e+00 737
10 TraesCS7A01G311200 chr6D 85.492 193 19 2 354 537 933037 932845 5.190000e-45 193
11 TraesCS7A01G311200 chr6D 85.204 196 16 3 354 537 297361108 297361302 6.710000e-44 189
12 TraesCS7A01G311200 chr6D 86.607 112 12 3 147 257 933190 933081 2.480000e-23 121
13 TraesCS7A01G311200 chr2A 76.369 347 60 17 1704 2032 135273804 135274146 3.140000e-37 167
14 TraesCS7A01G311200 chr1D 89.286 112 11 1 144 254 168800152 168800263 6.850000e-29 139
15 TraesCS7A01G311200 chr2B 87.129 101 13 0 148 248 639917832 639917732 1.160000e-21 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G311200 chr7A 440691162 440696238 5076 False 9376.0 9376 100.00000 1 5077 1 chr7A.!!$F1 5076
1 TraesCS7A01G311200 chr7D 390020430 390025709 5279 False 1735.0 5291 91.66325 1 4872 4 chr7D.!!$F2 4871
2 TraesCS7A01G311200 chr7B 385063572 385068447 4875 False 1797.5 3555 94.80850 1 4395 4 chr7B.!!$F1 4394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 431 0.176680 TTGGGCGCAAATGTGTTGTT 59.823 45.000 14.56 0.0 0.00 2.83 F
828 1854 2.563179 TCTGGTCCTTCAGTTCTGTAGC 59.437 50.000 0.00 0.0 36.25 3.58 F
1997 3027 1.864082 GAGGAGCTTGCTTATCTTCGC 59.136 52.381 0.00 0.0 0.00 4.70 F
3933 5143 0.033109 AACCTCTGGCTATTTGGGGC 60.033 55.000 0.00 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1621 2648 0.325296 TCCCCATCCGCACTAGAAGT 60.325 55.0 0.0 0.0 0.00 3.01 R
2036 3066 1.538047 TTGCTCTGGCTGTTTGATCC 58.462 50.0 0.0 0.0 39.59 3.36 R
3938 5148 0.397114 GCCATAAGGTTTCCCCTGGG 60.397 60.0 5.5 5.5 45.47 4.45 R
4996 6214 0.034337 ATAGTGCGACCAAACCGTGT 59.966 50.0 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.045926 CAGCTCGGTTTCCAGGGG 60.046 66.667 0.00 0.00 0.00 4.79
72 73 2.992114 AAGGTCGCGGCTCTGTCT 60.992 61.111 11.94 0.00 0.00 3.41
132 141 1.147376 GTTTGTTTTGGGTGGGGGC 59.853 57.895 0.00 0.00 0.00 5.80
143 152 1.450312 GTGGGGGCTTCTGATGTCG 60.450 63.158 0.00 0.00 0.00 4.35
160 169 2.570284 CGGAGGGGGTTTGTTTGCC 61.570 63.158 0.00 0.00 0.00 4.52
247 256 1.080705 ACTCTTTCTTCGCCGGACG 60.081 57.895 5.05 9.12 45.62 4.79
283 292 4.864334 GCAGCGGGATGGGAGGTG 62.864 72.222 0.00 0.00 36.57 4.00
359 371 6.574350 AGTTACTGCACTATTTAAGCTCGAT 58.426 36.000 0.00 0.00 0.00 3.59
400 417 0.534652 TTTTGCCATGCTGTTTGGGC 60.535 50.000 0.00 0.00 46.58 5.36
414 431 0.176680 TTGGGCGCAAATGTGTTGTT 59.823 45.000 14.56 0.00 0.00 2.83
481 498 4.637534 CCTCATACCACTGAACTTGATTGG 59.362 45.833 0.00 0.00 0.00 3.16
531 556 9.065871 GCAATTTGCTTCTTGTAAATACTACTG 57.934 33.333 14.11 0.00 39.47 2.74
750 1474 7.159372 AGTCTAGCGAAAAGGACTAATTTGAA 58.841 34.615 0.00 0.00 37.29 2.69
828 1854 2.563179 TCTGGTCCTTCAGTTCTGTAGC 59.437 50.000 0.00 0.00 36.25 3.58
927 1953 3.190535 TCCGTTCTCTTTTATTTGCAGGC 59.809 43.478 0.00 0.00 0.00 4.85
983 2010 4.019771 TGCATGGTTGGTGTTCAGAGTATA 60.020 41.667 0.00 0.00 0.00 1.47
1032 2059 3.941483 AGATCATGTTCGACAACCAATCC 59.059 43.478 0.00 0.00 0.00 3.01
1092 2119 2.797177 ATCCTCTCAAGCCCAAGTTC 57.203 50.000 0.00 0.00 0.00 3.01
1156 2183 4.275936 CCGACAAGAAAACCAAGAAGACAT 59.724 41.667 0.00 0.00 0.00 3.06
1192 2219 4.648626 AGCCGCCTCTTGCAAGCA 62.649 61.111 21.99 9.71 40.46 3.91
1519 2546 2.766970 TGCACGGCTTAAAACTTCAC 57.233 45.000 0.00 0.00 0.00 3.18
1521 2548 3.468770 TGCACGGCTTAAAACTTCACTA 58.531 40.909 0.00 0.00 0.00 2.74
1525 2552 5.277634 GCACGGCTTAAAACTTCACTAGAAA 60.278 40.000 0.00 0.00 32.35 2.52
1559 2586 3.262915 AGCCTTTCTGAACAGCTATCAGT 59.737 43.478 21.63 0.00 43.77 3.41
1599 2626 4.645535 AGCAGCATGAAGAAACTGTAAGA 58.354 39.130 0.00 0.00 39.69 2.10
1621 2648 2.442458 ATGGGCATGGCAATCGCA 60.442 55.556 22.06 9.60 41.24 5.10
1701 2728 2.033236 TGAGCTGCGTCGTTTAAACAAG 60.033 45.455 18.07 9.25 0.00 3.16
1852 2879 8.774586 GTTCTACTTCAACTAATCTTTTCTGCA 58.225 33.333 0.00 0.00 0.00 4.41
1997 3027 1.864082 GAGGAGCTTGCTTATCTTCGC 59.136 52.381 0.00 0.00 0.00 4.70
2256 3286 2.416431 GCATGGATTGAAGCCACAGAAC 60.416 50.000 3.43 0.00 38.44 3.01
2571 3601 1.277557 GACCTTCAGTGTCTCTGCCAT 59.722 52.381 0.00 0.00 43.32 4.40
2693 3723 1.882912 CACCACAAGTTGCAGAGCTA 58.117 50.000 1.81 0.00 0.00 3.32
2765 3795 4.393371 GGAATCACTGAAACTGCTAACTCC 59.607 45.833 0.00 0.00 0.00 3.85
2833 3863 2.161410 CGCATTTGCAGGCTGTAAGTAA 59.839 45.455 17.37 4.46 42.21 2.24
2855 3885 5.450818 AAGTAGCCAGATTGAACCCATAA 57.549 39.130 0.00 0.00 0.00 1.90
3023 4181 7.222999 GCAGCTTACAAAGATATAGAAGACGTT 59.777 37.037 0.00 0.00 0.00 3.99
3047 4205 2.223782 TGCATTTGTGAAGTGGCTTGAC 60.224 45.455 0.00 0.00 0.00 3.18
3110 4268 3.293311 TCTGCAAGCATTCTTTTCAGC 57.707 42.857 0.00 0.00 33.67 4.26
3290 4448 8.680903 TCGGAAGTTTCTAACTATAAAGACGAT 58.319 33.333 0.00 0.00 41.91 3.73
3357 4515 5.472137 GTGTCTGAAAAGTATGGCCAAGTTA 59.528 40.000 10.96 0.00 0.00 2.24
3565 4723 9.379791 AGGTAAATGCTGTATAGTTTTCTGTAC 57.620 33.333 0.00 0.00 42.36 2.90
3632 4795 3.857157 ATCATACCAGTACCGGCAAAT 57.143 42.857 0.00 0.00 0.00 2.32
3643 4806 1.883926 ACCGGCAAATGTAGTTTGGAC 59.116 47.619 0.00 0.00 45.84 4.02
3828 4991 4.038271 TGCCTTCAGAATTCATCAGGTT 57.962 40.909 8.44 0.00 0.00 3.50
3830 4993 5.188434 TGCCTTCAGAATTCATCAGGTTAG 58.812 41.667 8.44 0.00 0.00 2.34
3831 4994 5.189180 GCCTTCAGAATTCATCAGGTTAGT 58.811 41.667 8.44 0.00 0.00 2.24
3871 5081 3.084039 TCGCATCTGCCTTCTTGATTTT 58.916 40.909 0.00 0.00 37.91 1.82
3872 5082 3.507233 TCGCATCTGCCTTCTTGATTTTT 59.493 39.130 0.00 0.00 37.91 1.94
3907 5117 7.066163 TGTTTAATCTCCATGCTATCTGTGTTG 59.934 37.037 0.00 0.00 0.00 3.33
3933 5143 0.033109 AACCTCTGGCTATTTGGGGC 60.033 55.000 0.00 0.00 0.00 5.80
3934 5144 0.921256 ACCTCTGGCTATTTGGGGCT 60.921 55.000 0.00 0.00 0.00 5.19
3935 5145 1.140312 CCTCTGGCTATTTGGGGCTA 58.860 55.000 0.00 0.00 0.00 3.93
3936 5146 1.707427 CCTCTGGCTATTTGGGGCTAT 59.293 52.381 0.00 0.00 0.00 2.97
3938 5148 3.416156 CTCTGGCTATTTGGGGCTATTC 58.584 50.000 0.00 0.00 0.00 1.75
3972 5182 1.948104 ATGGCGCGTGCTCTAAATTA 58.052 45.000 21.89 0.00 42.25 1.40
3986 5197 7.060633 GTGCTCTAAATTACCGTTCATTTTGTG 59.939 37.037 0.00 0.00 0.00 3.33
3998 5209 5.062058 CGTTCATTTTGTGTTTCAGTTTGCT 59.938 36.000 0.00 0.00 0.00 3.91
4106 5317 4.615949 ACTCGATGTAGCATGATCTGAAC 58.384 43.478 0.00 0.00 0.00 3.18
4111 5322 6.595326 TCGATGTAGCATGATCTGAACTTTTT 59.405 34.615 0.00 0.00 0.00 1.94
4142 5354 3.056465 AGAAACTCTGGCTTACCTTCTCG 60.056 47.826 0.00 0.00 36.63 4.04
4169 5381 0.834612 TGACGGACAGTTTGAAGGGT 59.165 50.000 0.00 0.00 0.00 4.34
4186 5398 4.650972 AGGGTTGGTGTGTATGTATGTT 57.349 40.909 0.00 0.00 0.00 2.71
4187 5399 4.331968 AGGGTTGGTGTGTATGTATGTTG 58.668 43.478 0.00 0.00 0.00 3.33
4188 5400 4.076394 GGGTTGGTGTGTATGTATGTTGT 58.924 43.478 0.00 0.00 0.00 3.32
4207 5419 3.471680 TGTGTATTTGTGTGTGCTAGCA 58.528 40.909 14.93 14.93 0.00 3.49
4247 5463 1.562475 GGGTGTAGGGATTTGGTAGCA 59.438 52.381 0.00 0.00 0.00 3.49
4273 5490 3.437428 TGCTGAAACATGCGATTTATGC 58.563 40.909 0.00 0.00 0.00 3.14
4287 5504 5.686841 GCGATTTATGCATGCTATGTTTTCA 59.313 36.000 20.33 0.00 0.00 2.69
4312 5529 1.242076 CAGAGGCAGGGTGTTTCAAG 58.758 55.000 0.00 0.00 0.00 3.02
4325 5542 3.560068 GTGTTTCAAGCTCCTTTTCGAGA 59.440 43.478 0.00 0.00 30.97 4.04
4362 5579 0.319211 TGCAGTTCCGGTACTCAACG 60.319 55.000 11.27 1.29 0.00 4.10
4371 5588 1.135460 CGGTACTCAACGGGAACTCTC 60.135 57.143 0.00 0.00 0.00 3.20
4373 5590 0.524862 TACTCAACGGGAACTCTCGC 59.475 55.000 0.00 0.00 0.00 5.03
4376 5593 1.738099 CAACGGGAACTCTCGCCAG 60.738 63.158 0.00 0.00 0.00 4.85
4395 5612 0.249657 GTCTGCTAGGAATGGGCGAG 60.250 60.000 0.00 0.00 0.00 5.03
4396 5613 1.596477 CTGCTAGGAATGGGCGAGC 60.596 63.158 0.00 0.00 0.00 5.03
4397 5614 2.037620 CTGCTAGGAATGGGCGAGCT 62.038 60.000 0.00 0.00 34.19 4.09
4398 5615 1.301322 GCTAGGAATGGGCGAGCTC 60.301 63.158 2.73 2.73 0.00 4.09
4399 5616 1.369321 CTAGGAATGGGCGAGCTCC 59.631 63.158 8.47 0.47 0.00 4.70
4400 5617 1.075226 TAGGAATGGGCGAGCTCCT 60.075 57.895 8.47 8.37 41.29 3.69
4401 5618 0.187606 TAGGAATGGGCGAGCTCCTA 59.812 55.000 8.47 6.70 39.13 2.94
4402 5619 0.691078 AGGAATGGGCGAGCTCCTAA 60.691 55.000 8.47 0.00 36.51 2.69
4403 5620 0.250081 GGAATGGGCGAGCTCCTAAG 60.250 60.000 8.47 0.00 0.00 2.18
4404 5621 0.753262 GAATGGGCGAGCTCCTAAGA 59.247 55.000 8.47 0.00 0.00 2.10
4405 5622 1.346068 GAATGGGCGAGCTCCTAAGAT 59.654 52.381 8.47 0.00 0.00 2.40
4406 5623 0.683973 ATGGGCGAGCTCCTAAGATG 59.316 55.000 8.47 0.00 0.00 2.90
4407 5624 0.687757 TGGGCGAGCTCCTAAGATGT 60.688 55.000 8.47 0.00 0.00 3.06
4408 5625 0.032815 GGGCGAGCTCCTAAGATGTC 59.967 60.000 8.47 0.00 0.00 3.06
4409 5626 0.747255 GGCGAGCTCCTAAGATGTCA 59.253 55.000 8.47 0.00 0.00 3.58
4410 5627 1.342819 GGCGAGCTCCTAAGATGTCAT 59.657 52.381 8.47 0.00 0.00 3.06
4411 5628 2.609244 GGCGAGCTCCTAAGATGTCATC 60.609 54.545 8.47 4.52 0.00 2.92
4412 5629 2.295909 GCGAGCTCCTAAGATGTCATCT 59.704 50.000 9.68 9.68 42.61 2.90
4413 5630 3.611530 GCGAGCTCCTAAGATGTCATCTC 60.612 52.174 15.75 2.60 39.08 2.75
4414 5631 3.567585 CGAGCTCCTAAGATGTCATCTCA 59.432 47.826 15.75 0.10 39.08 3.27
4415 5632 4.320421 CGAGCTCCTAAGATGTCATCTCAG 60.320 50.000 15.75 10.77 39.08 3.35
4416 5633 3.321682 AGCTCCTAAGATGTCATCTCAGC 59.678 47.826 15.75 17.90 39.08 4.26
4417 5634 3.554752 GCTCCTAAGATGTCATCTCAGCC 60.555 52.174 15.75 0.00 39.08 4.85
4418 5635 2.625314 TCCTAAGATGTCATCTCAGCCG 59.375 50.000 15.75 0.00 39.08 5.52
4419 5636 2.625314 CCTAAGATGTCATCTCAGCCGA 59.375 50.000 15.75 0.00 39.08 5.54
4420 5637 3.068732 CCTAAGATGTCATCTCAGCCGAA 59.931 47.826 15.75 0.00 39.08 4.30
4421 5638 3.616956 AAGATGTCATCTCAGCCGAAA 57.383 42.857 15.75 0.00 39.08 3.46
4422 5639 3.616956 AGATGTCATCTCAGCCGAAAA 57.383 42.857 9.68 0.00 33.42 2.29
4423 5640 4.148128 AGATGTCATCTCAGCCGAAAAT 57.852 40.909 9.68 0.00 33.42 1.82
4424 5641 4.521146 AGATGTCATCTCAGCCGAAAATT 58.479 39.130 9.68 0.00 33.42 1.82
4425 5642 4.946157 AGATGTCATCTCAGCCGAAAATTT 59.054 37.500 9.68 0.00 33.42 1.82
4426 5643 4.424061 TGTCATCTCAGCCGAAAATTTG 57.576 40.909 0.00 0.00 0.00 2.32
4427 5644 4.071423 TGTCATCTCAGCCGAAAATTTGA 58.929 39.130 0.00 0.00 0.00 2.69
4428 5645 4.518590 TGTCATCTCAGCCGAAAATTTGAA 59.481 37.500 0.00 0.00 0.00 2.69
4429 5646 5.009510 TGTCATCTCAGCCGAAAATTTGAAA 59.990 36.000 0.00 0.00 0.00 2.69
4430 5647 5.343325 GTCATCTCAGCCGAAAATTTGAAAC 59.657 40.000 0.00 0.00 0.00 2.78
4431 5648 4.237349 TCTCAGCCGAAAATTTGAAACC 57.763 40.909 0.00 0.00 0.00 3.27
4432 5649 3.634448 TCTCAGCCGAAAATTTGAAACCA 59.366 39.130 0.00 0.00 0.00 3.67
4433 5650 4.280677 TCTCAGCCGAAAATTTGAAACCAT 59.719 37.500 0.00 0.00 0.00 3.55
4434 5651 4.555262 TCAGCCGAAAATTTGAAACCATC 58.445 39.130 0.00 0.00 0.00 3.51
4435 5652 4.280677 TCAGCCGAAAATTTGAAACCATCT 59.719 37.500 0.00 0.00 0.00 2.90
4436 5653 4.622740 CAGCCGAAAATTTGAAACCATCTC 59.377 41.667 0.00 0.00 0.00 2.75
4437 5654 4.524328 AGCCGAAAATTTGAAACCATCTCT 59.476 37.500 0.00 0.00 0.00 3.10
4438 5655 5.011023 AGCCGAAAATTTGAAACCATCTCTT 59.989 36.000 0.00 0.00 0.00 2.85
4439 5656 5.696270 GCCGAAAATTTGAAACCATCTCTTT 59.304 36.000 0.00 0.00 0.00 2.52
4440 5657 6.866248 GCCGAAAATTTGAAACCATCTCTTTA 59.134 34.615 0.00 0.00 0.00 1.85
4441 5658 7.383843 GCCGAAAATTTGAAACCATCTCTTTAA 59.616 33.333 0.00 0.00 0.00 1.52
4442 5659 9.423061 CCGAAAATTTGAAACCATCTCTTTAAT 57.577 29.630 0.00 0.00 0.00 1.40
4449 5666 9.567776 TTTGAAACCATCTCTTTAATGTGTAGA 57.432 29.630 0.00 0.00 0.00 2.59
4450 5667 9.567776 TTGAAACCATCTCTTTAATGTGTAGAA 57.432 29.630 0.00 0.00 0.00 2.10
4451 5668 9.739276 TGAAACCATCTCTTTAATGTGTAGAAT 57.261 29.630 0.00 0.00 0.00 2.40
4506 5723 9.796120 TTTTAAAATTTACTGTTCACTCAGGTG 57.204 29.630 0.00 0.00 44.23 4.00
4507 5724 5.438761 AAATTTACTGTTCACTCAGGTGC 57.561 39.130 0.00 0.00 42.72 5.01
4508 5725 3.552132 TTTACTGTTCACTCAGGTGCA 57.448 42.857 0.00 0.00 42.72 4.57
4509 5726 2.820059 TACTGTTCACTCAGGTGCAG 57.180 50.000 0.00 0.00 42.72 4.41
4510 5727 1.123077 ACTGTTCACTCAGGTGCAGA 58.877 50.000 9.50 0.00 42.72 4.26
4511 5728 1.696336 ACTGTTCACTCAGGTGCAGAT 59.304 47.619 9.50 0.00 42.72 2.90
4512 5729 2.074576 CTGTTCACTCAGGTGCAGATG 58.925 52.381 0.00 0.00 42.72 2.90
4513 5730 1.417517 TGTTCACTCAGGTGCAGATGT 59.582 47.619 0.00 0.00 42.72 3.06
4514 5731 1.802960 GTTCACTCAGGTGCAGATGTG 59.197 52.381 0.00 0.00 42.72 3.21
4538 5755 4.880759 AGATACATCTGAGCTCCGAAATG 58.119 43.478 12.12 9.26 35.42 2.32
4539 5756 4.343526 AGATACATCTGAGCTCCGAAATGT 59.656 41.667 12.12 14.29 35.42 2.71
4540 5757 3.340814 ACATCTGAGCTCCGAAATGTT 57.659 42.857 12.12 0.00 0.00 2.71
4541 5758 3.005554 ACATCTGAGCTCCGAAATGTTG 58.994 45.455 12.12 7.88 0.00 3.33
4542 5759 1.442769 TCTGAGCTCCGAAATGTTGC 58.557 50.000 12.15 0.00 0.00 4.17
4543 5760 1.002430 TCTGAGCTCCGAAATGTTGCT 59.998 47.619 12.15 0.00 36.63 3.91
4545 5762 1.731720 GAGCTCCGAAATGTTGCTCT 58.268 50.000 0.87 0.00 44.52 4.09
4546 5763 2.079925 GAGCTCCGAAATGTTGCTCTT 58.920 47.619 0.87 0.00 44.52 2.85
4547 5764 2.485814 GAGCTCCGAAATGTTGCTCTTT 59.514 45.455 0.87 0.00 44.52 2.52
4548 5765 3.674997 AGCTCCGAAATGTTGCTCTTTA 58.325 40.909 0.00 0.00 0.00 1.85
4549 5766 4.072131 AGCTCCGAAATGTTGCTCTTTAA 58.928 39.130 0.00 0.00 0.00 1.52
4550 5767 4.518970 AGCTCCGAAATGTTGCTCTTTAAA 59.481 37.500 0.00 0.00 0.00 1.52
4551 5768 5.009610 AGCTCCGAAATGTTGCTCTTTAAAA 59.990 36.000 0.00 0.00 0.00 1.52
4552 5769 5.689961 GCTCCGAAATGTTGCTCTTTAAAAA 59.310 36.000 0.00 0.00 0.00 1.94
4600 5817 7.859325 ACTAAGAAAACAGAAGCTTGTTACA 57.141 32.000 2.10 0.00 40.24 2.41
4601 5818 7.694886 ACTAAGAAAACAGAAGCTTGTTACAC 58.305 34.615 2.10 0.00 40.24 2.90
4602 5819 5.500645 AGAAAACAGAAGCTTGTTACACC 57.499 39.130 2.10 0.00 40.24 4.16
4603 5820 5.193679 AGAAAACAGAAGCTTGTTACACCT 58.806 37.500 2.10 0.00 40.24 4.00
4604 5821 6.354130 AGAAAACAGAAGCTTGTTACACCTA 58.646 36.000 2.10 0.00 40.24 3.08
4605 5822 6.260271 AGAAAACAGAAGCTTGTTACACCTAC 59.740 38.462 2.10 0.00 40.24 3.18
4606 5823 4.004196 ACAGAAGCTTGTTACACCTACC 57.996 45.455 2.10 0.00 0.00 3.18
4607 5824 3.646637 ACAGAAGCTTGTTACACCTACCT 59.353 43.478 2.10 0.00 0.00 3.08
4608 5825 4.102681 ACAGAAGCTTGTTACACCTACCTT 59.897 41.667 2.10 0.00 0.00 3.50
4609 5826 5.063880 CAGAAGCTTGTTACACCTACCTTT 58.936 41.667 2.10 0.00 0.00 3.11
4610 5827 5.049405 CAGAAGCTTGTTACACCTACCTTTG 60.049 44.000 2.10 0.00 0.00 2.77
4611 5828 3.146847 AGCTTGTTACACCTACCTTTGC 58.853 45.455 0.00 0.00 0.00 3.68
4612 5829 2.882137 GCTTGTTACACCTACCTTTGCA 59.118 45.455 0.00 0.00 0.00 4.08
4613 5830 3.304458 GCTTGTTACACCTACCTTTGCAC 60.304 47.826 0.00 0.00 0.00 4.57
4614 5831 2.853705 TGTTACACCTACCTTTGCACC 58.146 47.619 0.00 0.00 0.00 5.01
4615 5832 2.172930 TGTTACACCTACCTTTGCACCA 59.827 45.455 0.00 0.00 0.00 4.17
4616 5833 3.215975 GTTACACCTACCTTTGCACCAA 58.784 45.455 0.00 0.00 0.00 3.67
4617 5834 1.687563 ACACCTACCTTTGCACCAAC 58.312 50.000 0.00 0.00 0.00 3.77
4618 5835 1.214424 ACACCTACCTTTGCACCAACT 59.786 47.619 0.00 0.00 0.00 3.16
4619 5836 2.440253 ACACCTACCTTTGCACCAACTA 59.560 45.455 0.00 0.00 0.00 2.24
4620 5837 3.117813 ACACCTACCTTTGCACCAACTAA 60.118 43.478 0.00 0.00 0.00 2.24
4621 5838 3.886505 CACCTACCTTTGCACCAACTAAA 59.113 43.478 0.00 0.00 0.00 1.85
4622 5839 4.339814 CACCTACCTTTGCACCAACTAAAA 59.660 41.667 0.00 0.00 0.00 1.52
4623 5840 4.957327 ACCTACCTTTGCACCAACTAAAAA 59.043 37.500 0.00 0.00 0.00 1.94
4624 5841 5.600898 ACCTACCTTTGCACCAACTAAAAAT 59.399 36.000 0.00 0.00 0.00 1.82
4625 5842 6.778559 ACCTACCTTTGCACCAACTAAAAATA 59.221 34.615 0.00 0.00 0.00 1.40
4626 5843 7.453439 ACCTACCTTTGCACCAACTAAAAATAT 59.547 33.333 0.00 0.00 0.00 1.28
4627 5844 7.759433 CCTACCTTTGCACCAACTAAAAATATG 59.241 37.037 0.00 0.00 0.00 1.78
4628 5845 7.061566 ACCTTTGCACCAACTAAAAATATGT 57.938 32.000 0.00 0.00 0.00 2.29
4629 5846 8.184304 ACCTTTGCACCAACTAAAAATATGTA 57.816 30.769 0.00 0.00 0.00 2.29
4630 5847 8.085909 ACCTTTGCACCAACTAAAAATATGTAC 58.914 33.333 0.00 0.00 0.00 2.90
4631 5848 8.085296 CCTTTGCACCAACTAAAAATATGTACA 58.915 33.333 0.00 0.00 0.00 2.90
4632 5849 9.469807 CTTTGCACCAACTAAAAATATGTACAA 57.530 29.630 0.00 0.00 0.00 2.41
4633 5850 9.988815 TTTGCACCAACTAAAAATATGTACAAT 57.011 25.926 0.00 0.00 0.00 2.71
4634 5851 9.632807 TTGCACCAACTAAAAATATGTACAATC 57.367 29.630 0.00 0.00 0.00 2.67
4635 5852 8.797438 TGCACCAACTAAAAATATGTACAATCA 58.203 29.630 0.00 0.00 0.00 2.57
4636 5853 9.632807 GCACCAACTAAAAATATGTACAATCAA 57.367 29.630 0.00 0.00 0.00 2.57
4660 5877 8.794406 CAAATTATTACAGACATTAAACACCGC 58.206 33.333 0.00 0.00 0.00 5.68
4661 5878 7.618502 ATTATTACAGACATTAAACACCGCA 57.381 32.000 0.00 0.00 0.00 5.69
4662 5879 5.950758 ATTACAGACATTAAACACCGCAA 57.049 34.783 0.00 0.00 0.00 4.85
4663 5880 5.752892 TTACAGACATTAAACACCGCAAA 57.247 34.783 0.00 0.00 0.00 3.68
4664 5881 4.640789 ACAGACATTAAACACCGCAAAA 57.359 36.364 0.00 0.00 0.00 2.44
4665 5882 5.195001 ACAGACATTAAACACCGCAAAAT 57.805 34.783 0.00 0.00 0.00 1.82
4666 5883 4.981674 ACAGACATTAAACACCGCAAAATG 59.018 37.500 0.00 0.00 34.48 2.32
4667 5884 4.981674 CAGACATTAAACACCGCAAAATGT 59.018 37.500 0.00 0.00 41.98 2.71
4668 5885 5.461737 CAGACATTAAACACCGCAAAATGTT 59.538 36.000 0.00 0.00 40.02 2.71
4669 5886 5.461737 AGACATTAAACACCGCAAAATGTTG 59.538 36.000 0.00 0.00 40.02 3.33
4670 5887 5.112686 ACATTAAACACCGCAAAATGTTGT 58.887 33.333 0.00 0.00 37.46 3.32
4671 5888 5.233263 ACATTAAACACCGCAAAATGTTGTC 59.767 36.000 0.00 0.00 37.46 3.18
4672 5889 2.949451 AACACCGCAAAATGTTGTCA 57.051 40.000 0.00 0.00 37.64 3.58
4673 5890 3.451141 AACACCGCAAAATGTTGTCAT 57.549 38.095 0.00 0.00 37.64 3.06
4674 5891 3.011949 ACACCGCAAAATGTTGTCATC 57.988 42.857 0.00 0.00 37.06 2.92
4675 5892 2.360483 ACACCGCAAAATGTTGTCATCA 59.640 40.909 0.00 0.00 37.06 3.07
4676 5893 3.005684 ACACCGCAAAATGTTGTCATCAT 59.994 39.130 0.00 0.00 37.06 2.45
4677 5894 3.365520 CACCGCAAAATGTTGTCATCATG 59.634 43.478 0.00 0.00 37.06 3.07
4678 5895 2.924926 CCGCAAAATGTTGTCATCATGG 59.075 45.455 0.00 0.00 37.06 3.66
4679 5896 2.924926 CGCAAAATGTTGTCATCATGGG 59.075 45.455 0.00 0.00 37.06 4.00
4680 5897 3.614630 CGCAAAATGTTGTCATCATGGGT 60.615 43.478 0.00 0.00 37.06 4.51
4681 5898 3.928375 GCAAAATGTTGTCATCATGGGTC 59.072 43.478 0.00 0.00 37.06 4.46
4682 5899 4.322198 GCAAAATGTTGTCATCATGGGTCT 60.322 41.667 0.00 0.00 37.06 3.85
4683 5900 5.105797 GCAAAATGTTGTCATCATGGGTCTA 60.106 40.000 0.00 0.00 37.06 2.59
4684 5901 6.572119 GCAAAATGTTGTCATCATGGGTCTAA 60.572 38.462 0.00 0.00 37.06 2.10
4685 5902 7.377398 CAAAATGTTGTCATCATGGGTCTAAA 58.623 34.615 0.00 0.00 32.56 1.85
4686 5903 7.722949 AAATGTTGTCATCATGGGTCTAAAT 57.277 32.000 0.00 0.00 32.56 1.40
4687 5904 8.821686 AAATGTTGTCATCATGGGTCTAAATA 57.178 30.769 0.00 0.00 32.56 1.40
4688 5905 8.455903 AATGTTGTCATCATGGGTCTAAATAG 57.544 34.615 0.00 0.00 32.56 1.73
4689 5906 5.822519 TGTTGTCATCATGGGTCTAAATAGC 59.177 40.000 0.00 0.00 0.00 2.97
4690 5907 4.973168 TGTCATCATGGGTCTAAATAGCC 58.027 43.478 0.00 0.00 37.54 3.93
4704 5921 8.199176 GTCTAAATAGCCAGACCTAAGTTTTC 57.801 38.462 0.00 0.00 36.06 2.29
4705 5922 7.822822 GTCTAAATAGCCAGACCTAAGTTTTCA 59.177 37.037 0.00 0.00 36.06 2.69
4706 5923 6.819397 AAATAGCCAGACCTAAGTTTTCAC 57.181 37.500 0.00 0.00 0.00 3.18
4707 5924 2.767505 AGCCAGACCTAAGTTTTCACG 58.232 47.619 0.00 0.00 0.00 4.35
4708 5925 2.367567 AGCCAGACCTAAGTTTTCACGA 59.632 45.455 0.00 0.00 0.00 4.35
4709 5926 3.008049 AGCCAGACCTAAGTTTTCACGAT 59.992 43.478 0.00 0.00 0.00 3.73
4710 5927 4.222145 AGCCAGACCTAAGTTTTCACGATA 59.778 41.667 0.00 0.00 0.00 2.92
4711 5928 4.933400 GCCAGACCTAAGTTTTCACGATAA 59.067 41.667 0.00 0.00 0.00 1.75
4712 5929 5.063564 GCCAGACCTAAGTTTTCACGATAAG 59.936 44.000 0.00 0.00 0.00 1.73
4713 5930 6.164176 CCAGACCTAAGTTTTCACGATAAGT 58.836 40.000 0.00 0.00 0.00 2.24
4714 5931 7.318141 CCAGACCTAAGTTTTCACGATAAGTA 58.682 38.462 0.00 0.00 0.00 2.24
4715 5932 7.275123 CCAGACCTAAGTTTTCACGATAAGTAC 59.725 40.741 0.00 0.00 0.00 2.73
4768 5985 1.337703 ACCAACACATGCACATCACAC 59.662 47.619 0.00 0.00 0.00 3.82
4770 5987 2.034939 CCAACACATGCACATCACACTT 59.965 45.455 0.00 0.00 0.00 3.16
4773 5990 0.599558 ACATGCACATCACACTTGCC 59.400 50.000 0.00 0.00 35.26 4.52
4776 5993 2.562912 CACATCACACTTGCCGCC 59.437 61.111 0.00 0.00 0.00 6.13
4782 5999 4.189580 ACACTTGCCGCCACCACT 62.190 61.111 0.00 0.00 0.00 4.00
4803 6021 3.678289 TGTCAAGACATGCATAAGTGCT 58.322 40.909 0.00 0.00 43.28 4.40
4806 6024 5.337491 TGTCAAGACATGCATAAGTGCTAGA 60.337 40.000 0.00 0.00 43.28 2.43
4835 6053 7.068839 ACAGACCACTAGATCTATTTCGACAAT 59.931 37.037 2.11 0.00 0.00 2.71
4860 6078 2.884639 GGCCAAAACATCACACTGTAGT 59.115 45.455 0.00 0.00 0.00 2.73
4861 6079 3.058224 GGCCAAAACATCACACTGTAGTC 60.058 47.826 0.00 0.00 0.00 2.59
4872 6090 0.395448 ACTGTAGTCGGTAGGCTCCC 60.395 60.000 0.00 0.00 32.57 4.30
4873 6091 1.445716 CTGTAGTCGGTAGGCTCCCG 61.446 65.000 12.90 12.90 46.83 5.14
4881 6099 2.289592 GGTAGGCTCCCGAAGATAGA 57.710 55.000 0.00 0.00 0.00 1.98
4882 6100 2.164338 GGTAGGCTCCCGAAGATAGAG 58.836 57.143 0.00 0.00 0.00 2.43
4885 6103 2.431023 GCTCCCGAAGATAGAGCCA 58.569 57.895 0.00 0.00 45.83 4.75
4886 6104 0.032815 GCTCCCGAAGATAGAGCCAC 59.967 60.000 0.00 0.00 45.83 5.01
4887 6105 1.403814 CTCCCGAAGATAGAGCCACA 58.596 55.000 0.00 0.00 0.00 4.17
4888 6106 1.757118 CTCCCGAAGATAGAGCCACAA 59.243 52.381 0.00 0.00 0.00 3.33
4889 6107 1.757118 TCCCGAAGATAGAGCCACAAG 59.243 52.381 0.00 0.00 0.00 3.16
4890 6108 1.757118 CCCGAAGATAGAGCCACAAGA 59.243 52.381 0.00 0.00 0.00 3.02
4891 6109 2.168521 CCCGAAGATAGAGCCACAAGAA 59.831 50.000 0.00 0.00 0.00 2.52
4892 6110 3.181461 CCCGAAGATAGAGCCACAAGAAT 60.181 47.826 0.00 0.00 0.00 2.40
4893 6111 4.446371 CCGAAGATAGAGCCACAAGAATT 58.554 43.478 0.00 0.00 0.00 2.17
4894 6112 4.878397 CCGAAGATAGAGCCACAAGAATTT 59.122 41.667 0.00 0.00 0.00 1.82
4895 6113 5.355350 CCGAAGATAGAGCCACAAGAATTTT 59.645 40.000 0.00 0.00 0.00 1.82
4896 6114 6.127897 CCGAAGATAGAGCCACAAGAATTTTT 60.128 38.462 0.00 0.00 0.00 1.94
4915 6133 3.607422 TTTTCTGCGTGACATTGTCTG 57.393 42.857 17.26 10.94 33.15 3.51
4916 6134 2.238942 TTCTGCGTGACATTGTCTGT 57.761 45.000 17.26 0.00 42.15 3.41
4917 6135 3.378911 TTCTGCGTGACATTGTCTGTA 57.621 42.857 17.26 8.79 38.54 2.74
4918 6136 2.672714 TCTGCGTGACATTGTCTGTAC 58.327 47.619 17.26 6.97 38.54 2.90
4919 6137 1.726791 CTGCGTGACATTGTCTGTACC 59.273 52.381 17.26 3.68 38.54 3.34
4920 6138 1.076332 GCGTGACATTGTCTGTACCC 58.924 55.000 17.26 0.00 38.54 3.69
4921 6139 1.337823 GCGTGACATTGTCTGTACCCT 60.338 52.381 17.26 0.00 38.54 4.34
4922 6140 2.870435 GCGTGACATTGTCTGTACCCTT 60.870 50.000 17.26 0.00 38.54 3.95
4923 6141 3.615592 GCGTGACATTGTCTGTACCCTTA 60.616 47.826 17.26 0.00 38.54 2.69
4924 6142 4.562082 CGTGACATTGTCTGTACCCTTAA 58.438 43.478 17.26 0.00 38.54 1.85
4925 6143 4.625742 CGTGACATTGTCTGTACCCTTAAG 59.374 45.833 17.26 0.00 38.54 1.85
4926 6144 4.392138 GTGACATTGTCTGTACCCTTAAGC 59.608 45.833 17.26 0.00 38.54 3.09
4927 6145 4.286032 TGACATTGTCTGTACCCTTAAGCT 59.714 41.667 17.26 0.00 38.54 3.74
4928 6146 5.221843 TGACATTGTCTGTACCCTTAAGCTT 60.222 40.000 17.26 3.48 38.54 3.74
4929 6147 5.246307 ACATTGTCTGTACCCTTAAGCTTC 58.754 41.667 0.00 0.00 35.91 3.86
4930 6148 3.587797 TGTCTGTACCCTTAAGCTTCG 57.412 47.619 0.00 0.00 0.00 3.79
4931 6149 2.269172 GTCTGTACCCTTAAGCTTCGC 58.731 52.381 0.00 0.00 0.00 4.70
4932 6150 1.206371 TCTGTACCCTTAAGCTTCGCC 59.794 52.381 0.00 0.00 0.00 5.54
4933 6151 0.978151 TGTACCCTTAAGCTTCGCCA 59.022 50.000 0.00 0.00 0.00 5.69
4934 6152 1.338389 TGTACCCTTAAGCTTCGCCAC 60.338 52.381 0.00 0.00 0.00 5.01
4935 6153 1.066358 GTACCCTTAAGCTTCGCCACT 60.066 52.381 0.00 0.00 0.00 4.00
4936 6154 1.272807 ACCCTTAAGCTTCGCCACTA 58.727 50.000 0.00 0.00 0.00 2.74
4937 6155 1.626825 ACCCTTAAGCTTCGCCACTAA 59.373 47.619 0.00 0.00 0.00 2.24
4938 6156 2.238898 ACCCTTAAGCTTCGCCACTAAT 59.761 45.455 0.00 0.00 0.00 1.73
4939 6157 2.614057 CCCTTAAGCTTCGCCACTAATG 59.386 50.000 0.00 0.00 0.00 1.90
4940 6158 3.531538 CCTTAAGCTTCGCCACTAATGA 58.468 45.455 0.00 0.00 0.00 2.57
4941 6159 4.130118 CCTTAAGCTTCGCCACTAATGAT 58.870 43.478 0.00 0.00 0.00 2.45
4942 6160 5.297547 CCTTAAGCTTCGCCACTAATGATA 58.702 41.667 0.00 0.00 0.00 2.15
4943 6161 5.177696 CCTTAAGCTTCGCCACTAATGATAC 59.822 44.000 0.00 0.00 0.00 2.24
4944 6162 3.819564 AGCTTCGCCACTAATGATACA 57.180 42.857 0.00 0.00 0.00 2.29
4945 6163 4.342862 AGCTTCGCCACTAATGATACAT 57.657 40.909 0.00 0.00 0.00 2.29
4946 6164 5.468540 AGCTTCGCCACTAATGATACATA 57.531 39.130 0.00 0.00 0.00 2.29
4947 6165 5.853936 AGCTTCGCCACTAATGATACATAA 58.146 37.500 0.00 0.00 0.00 1.90
4948 6166 6.288294 AGCTTCGCCACTAATGATACATAAA 58.712 36.000 0.00 0.00 0.00 1.40
4949 6167 6.202954 AGCTTCGCCACTAATGATACATAAAC 59.797 38.462 0.00 0.00 0.00 2.01
4950 6168 6.202954 GCTTCGCCACTAATGATACATAAACT 59.797 38.462 0.00 0.00 0.00 2.66
4951 6169 7.384115 GCTTCGCCACTAATGATACATAAACTA 59.616 37.037 0.00 0.00 0.00 2.24
4952 6170 8.812147 TTCGCCACTAATGATACATAAACTAG 57.188 34.615 0.00 0.00 0.00 2.57
4953 6171 6.866770 TCGCCACTAATGATACATAAACTAGC 59.133 38.462 0.00 0.00 0.00 3.42
4954 6172 6.645003 CGCCACTAATGATACATAAACTAGCA 59.355 38.462 0.00 0.00 0.00 3.49
4955 6173 7.331934 CGCCACTAATGATACATAAACTAGCAT 59.668 37.037 0.00 0.00 0.00 3.79
4956 6174 9.003658 GCCACTAATGATACATAAACTAGCATT 57.996 33.333 0.00 0.00 35.11 3.56
4973 6191 9.626045 AACTAGCATTGAAAACAACTAATTAGC 57.374 29.630 12.54 0.00 0.00 3.09
4974 6192 9.014297 ACTAGCATTGAAAACAACTAATTAGCT 57.986 29.630 12.54 0.00 0.00 3.32
4975 6193 9.282247 CTAGCATTGAAAACAACTAATTAGCTG 57.718 33.333 12.54 12.90 0.00 4.24
4976 6194 6.587608 AGCATTGAAAACAACTAATTAGCTGC 59.412 34.615 14.44 0.00 0.00 5.25
4977 6195 6.365789 GCATTGAAAACAACTAATTAGCTGCA 59.634 34.615 14.44 3.48 0.00 4.41
4978 6196 7.063780 GCATTGAAAACAACTAATTAGCTGCAT 59.936 33.333 14.44 3.03 0.00 3.96
4979 6197 7.872163 TTGAAAACAACTAATTAGCTGCATG 57.128 32.000 14.44 8.07 0.00 4.06
4980 6198 6.389091 TGAAAACAACTAATTAGCTGCATGG 58.611 36.000 14.44 0.00 0.00 3.66
4981 6199 6.208402 TGAAAACAACTAATTAGCTGCATGGA 59.792 34.615 14.44 0.00 0.00 3.41
4982 6200 5.824904 AACAACTAATTAGCTGCATGGAG 57.175 39.130 14.44 10.32 0.00 3.86
4983 6201 5.102953 ACAACTAATTAGCTGCATGGAGA 57.897 39.130 19.59 0.00 0.00 3.71
4984 6202 5.500234 ACAACTAATTAGCTGCATGGAGAA 58.500 37.500 19.59 4.50 0.00 2.87
4985 6203 5.355350 ACAACTAATTAGCTGCATGGAGAAC 59.645 40.000 19.59 0.58 0.00 3.01
4986 6204 5.102953 ACTAATTAGCTGCATGGAGAACA 57.897 39.130 19.59 0.00 0.00 3.18
4987 6205 5.688807 ACTAATTAGCTGCATGGAGAACAT 58.311 37.500 19.59 2.56 41.57 2.71
5001 6219 2.146342 AGAACATGCTTTCTCACACGG 58.854 47.619 0.00 0.00 29.24 4.94
5002 6220 1.873591 GAACATGCTTTCTCACACGGT 59.126 47.619 0.00 0.00 0.00 4.83
5003 6221 1.967319 ACATGCTTTCTCACACGGTT 58.033 45.000 0.00 0.00 0.00 4.44
5004 6222 2.297701 ACATGCTTTCTCACACGGTTT 58.702 42.857 0.00 0.00 0.00 3.27
5005 6223 2.033299 ACATGCTTTCTCACACGGTTTG 59.967 45.455 0.00 0.00 0.00 2.93
5006 6224 1.021202 TGCTTTCTCACACGGTTTGG 58.979 50.000 0.00 0.00 0.00 3.28
5007 6225 1.021968 GCTTTCTCACACGGTTTGGT 58.978 50.000 0.00 0.00 0.00 3.67
5008 6226 1.002792 GCTTTCTCACACGGTTTGGTC 60.003 52.381 0.00 0.00 0.00 4.02
5009 6227 1.260561 CTTTCTCACACGGTTTGGTCG 59.739 52.381 0.00 0.00 0.00 4.79
5010 6228 1.155424 TTCTCACACGGTTTGGTCGC 61.155 55.000 0.00 0.00 0.00 5.19
5011 6229 1.885388 CTCACACGGTTTGGTCGCA 60.885 57.895 0.00 0.00 0.00 5.10
5012 6230 2.101209 CTCACACGGTTTGGTCGCAC 62.101 60.000 0.00 0.00 0.00 5.34
5013 6231 2.177580 CACACGGTTTGGTCGCACT 61.178 57.895 0.00 0.00 0.00 4.40
5014 6232 0.876777 CACACGGTTTGGTCGCACTA 60.877 55.000 0.00 0.00 0.00 2.74
5015 6233 0.034337 ACACGGTTTGGTCGCACTAT 59.966 50.000 0.00 0.00 0.00 2.12
5016 6234 1.153353 CACGGTTTGGTCGCACTATT 58.847 50.000 0.00 0.00 0.00 1.73
5017 6235 1.127951 CACGGTTTGGTCGCACTATTC 59.872 52.381 0.00 0.00 0.00 1.75
5018 6236 1.001633 ACGGTTTGGTCGCACTATTCT 59.998 47.619 0.00 0.00 0.00 2.40
5019 6237 2.073816 CGGTTTGGTCGCACTATTCTT 58.926 47.619 0.00 0.00 0.00 2.52
5020 6238 2.159707 CGGTTTGGTCGCACTATTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
5021 6239 2.812011 GGTTTGGTCGCACTATTCTTGT 59.188 45.455 0.00 0.00 0.00 3.16
5022 6240 3.252458 GGTTTGGTCGCACTATTCTTGTT 59.748 43.478 0.00 0.00 0.00 2.83
5023 6241 4.464112 GTTTGGTCGCACTATTCTTGTTC 58.536 43.478 0.00 0.00 0.00 3.18
5024 6242 3.394674 TGGTCGCACTATTCTTGTTCA 57.605 42.857 0.00 0.00 0.00 3.18
5025 6243 3.325870 TGGTCGCACTATTCTTGTTCAG 58.674 45.455 0.00 0.00 0.00 3.02
5026 6244 3.006430 TGGTCGCACTATTCTTGTTCAGA 59.994 43.478 0.00 0.00 0.00 3.27
5027 6245 3.368236 GGTCGCACTATTCTTGTTCAGAC 59.632 47.826 0.00 0.00 0.00 3.51
5028 6246 3.987868 GTCGCACTATTCTTGTTCAGACA 59.012 43.478 0.00 0.00 0.00 3.41
5029 6247 4.090642 GTCGCACTATTCTTGTTCAGACAG 59.909 45.833 0.00 0.00 37.04 3.51
5030 6248 3.990469 CGCACTATTCTTGTTCAGACAGT 59.010 43.478 0.00 0.00 37.04 3.55
5031 6249 4.449068 CGCACTATTCTTGTTCAGACAGTT 59.551 41.667 0.00 0.00 37.04 3.16
5032 6250 5.388890 CGCACTATTCTTGTTCAGACAGTTC 60.389 44.000 0.00 0.00 37.04 3.01
5033 6251 5.698545 GCACTATTCTTGTTCAGACAGTTCT 59.301 40.000 0.00 0.00 37.04 3.01
5034 6252 6.868864 GCACTATTCTTGTTCAGACAGTTCTA 59.131 38.462 0.00 0.00 37.04 2.10
5035 6253 7.385205 GCACTATTCTTGTTCAGACAGTTCTAA 59.615 37.037 0.00 0.00 37.04 2.10
5036 6254 9.429359 CACTATTCTTGTTCAGACAGTTCTAAT 57.571 33.333 0.00 0.00 37.04 1.73
5060 6278 9.643778 AATAGATATACCTATTTCCCCCTTCAA 57.356 33.333 0.00 0.00 36.28 2.69
5061 6279 9.820260 ATAGATATACCTATTTCCCCCTTCAAT 57.180 33.333 0.00 0.00 0.00 2.57
5062 6280 7.933223 AGATATACCTATTTCCCCCTTCAATG 58.067 38.462 0.00 0.00 0.00 2.82
5063 6281 7.521115 AGATATACCTATTTCCCCCTTCAATGT 59.479 37.037 0.00 0.00 0.00 2.71
5064 6282 4.251103 ACCTATTTCCCCCTTCAATGTC 57.749 45.455 0.00 0.00 0.00 3.06
5065 6283 3.214328 CCTATTTCCCCCTTCAATGTCG 58.786 50.000 0.00 0.00 0.00 4.35
5066 6284 1.474330 ATTTCCCCCTTCAATGTCGC 58.526 50.000 0.00 0.00 0.00 5.19
5067 6285 0.404040 TTTCCCCCTTCAATGTCGCT 59.596 50.000 0.00 0.00 0.00 4.93
5068 6286 0.404040 TTCCCCCTTCAATGTCGCTT 59.596 50.000 0.00 0.00 0.00 4.68
5069 6287 0.322456 TCCCCCTTCAATGTCGCTTG 60.322 55.000 0.00 0.00 0.00 4.01
5070 6288 0.322456 CCCCCTTCAATGTCGCTTGA 60.322 55.000 0.00 0.00 33.42 3.02
5071 6289 1.683011 CCCCCTTCAATGTCGCTTGAT 60.683 52.381 0.00 0.00 35.20 2.57
5072 6290 1.672881 CCCCTTCAATGTCGCTTGATC 59.327 52.381 0.00 0.00 35.20 2.92
5073 6291 1.672881 CCCTTCAATGTCGCTTGATCC 59.327 52.381 0.00 0.00 35.20 3.36
5074 6292 2.358957 CCTTCAATGTCGCTTGATCCA 58.641 47.619 0.00 0.00 35.20 3.41
5075 6293 2.947652 CCTTCAATGTCGCTTGATCCAT 59.052 45.455 0.00 0.00 35.20 3.41
5076 6294 3.003068 CCTTCAATGTCGCTTGATCCATC 59.997 47.826 0.00 0.00 35.20 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 0.457851 CCTGAGCTTGAGACCTACCG 59.542 60.000 0.00 0.00 0.00 4.02
132 141 0.978146 ACCCCCTCCGACATCAGAAG 60.978 60.000 0.00 0.00 0.00 2.85
143 152 2.570284 CGGCAAACAAACCCCCTCC 61.570 63.158 0.00 0.00 0.00 4.30
247 256 3.512516 GGAATGCAGCAGACCGGC 61.513 66.667 0.00 0.00 35.03 6.13
283 292 7.172190 TGAGATGAGTGATTTTCAGACAAACTC 59.828 37.037 0.00 0.00 34.52 3.01
343 355 7.010923 AGCTGAAGAAATCGAGCTTAAATAGTG 59.989 37.037 0.00 0.00 38.53 2.74
359 371 6.877611 AATCGAACCTTTAAGCTGAAGAAA 57.122 33.333 10.77 0.00 0.00 2.52
400 417 1.769733 CCCAGAACAACACATTTGCG 58.230 50.000 0.00 0.00 0.00 4.85
414 431 0.548031 CCTAATCCTTGCTGCCCAGA 59.452 55.000 0.00 0.00 0.00 3.86
481 498 1.400737 AGGTATCGTACAGGCCTGAC 58.599 55.000 39.19 27.70 0.00 3.51
531 556 0.984230 TCTATCCCCCAATCATCCGC 59.016 55.000 0.00 0.00 0.00 5.54
750 1474 5.942236 ACAAGCACATCAACTCAATATCTGT 59.058 36.000 0.00 0.00 0.00 3.41
828 1854 4.695217 ACGGTATAACAAACAGGCATTG 57.305 40.909 0.00 0.00 0.00 2.82
861 1887 3.381272 AGAAACAAATGTCACCACCACAG 59.619 43.478 0.00 0.00 0.00 3.66
863 1889 4.359706 GAAGAAACAAATGTCACCACCAC 58.640 43.478 0.00 0.00 0.00 4.16
910 1936 4.022935 CACACTGCCTGCAAATAAAAGAGA 60.023 41.667 0.00 0.00 0.00 3.10
927 1953 7.535258 GCAGAATTTTACTACAATGTCACACTG 59.465 37.037 0.00 0.00 0.00 3.66
983 2010 8.571336 CCTCTTTCATGTTTACTCAAGACAAAT 58.429 33.333 0.00 0.00 0.00 2.32
1032 2059 1.164662 CCCTCGATCTGCATGGCTTG 61.165 60.000 0.00 0.00 0.00 4.01
1092 2119 1.376466 GGATCCCCATGATGACCCG 59.624 63.158 0.00 0.00 32.41 5.28
1156 2183 2.163010 GCTTCTTGCTTGCAATAGCTGA 59.837 45.455 23.22 7.14 41.76 4.26
1192 2219 4.574674 TGCTCTGGTTAACATTCTCCAT 57.425 40.909 8.10 0.00 0.00 3.41
1519 2546 6.625873 AAGGCTTGTTTTCTCAGTTTCTAG 57.374 37.500 0.00 0.00 0.00 2.43
1521 2548 5.654209 AGAAAGGCTTGTTTTCTCAGTTTCT 59.346 36.000 0.00 0.00 39.96 2.52
1525 2552 4.526970 TCAGAAAGGCTTGTTTTCTCAGT 58.473 39.130 0.00 0.00 41.60 3.41
1559 2586 4.039730 GCTGCTCCACCATAGAAGATAGAA 59.960 45.833 0.00 0.00 0.00 2.10
1599 2626 1.053424 GATTGCCATGCCCATCCAAT 58.947 50.000 0.00 4.34 0.00 3.16
1621 2648 0.325296 TCCCCATCCGCACTAGAAGT 60.325 55.000 0.00 0.00 0.00 3.01
1649 2676 6.129179 TCAAACTCCAAGTTTCCTGAAGAAT 58.871 36.000 2.19 0.00 44.47 2.40
1701 2728 3.131396 TCGTTTCTGAAACTGAAGCTCC 58.869 45.455 25.64 2.40 39.23 4.70
1852 2879 5.734720 TCTCGCTCTGTTGAAAATAAGGAT 58.265 37.500 0.00 0.00 0.00 3.24
1997 3027 6.421377 TGACGTAAACATGAATTGATCCAG 57.579 37.500 0.00 0.00 0.00 3.86
2036 3066 1.538047 TTGCTCTGGCTGTTTGATCC 58.462 50.000 0.00 0.00 39.59 3.36
2693 3723 7.639062 ATCCCTTCTCATAAGTGAATGGTAT 57.361 36.000 4.68 0.00 35.69 2.73
2833 3863 5.193679 GTTATGGGTTCAATCTGGCTACTT 58.806 41.667 0.00 0.00 0.00 2.24
3023 4181 1.755959 AGCCACTTCACAAATGCAACA 59.244 42.857 0.00 0.00 0.00 3.33
3110 4268 0.603172 AGCTTCAGTGACTGCTGCAG 60.603 55.000 27.02 27.02 36.49 4.41
3290 4448 2.525629 TCACAGGGAAGGCGTGGA 60.526 61.111 0.00 0.00 0.00 4.02
3393 4551 3.243068 GCCAACCAAAGTTCAGTACACAG 60.243 47.826 0.00 0.00 32.45 3.66
3565 4723 1.333636 CCTGCAGAGGGGTGGTCTAG 61.334 65.000 17.39 0.00 35.40 2.43
3568 4726 2.069165 AAACCTGCAGAGGGGTGGTC 62.069 60.000 17.39 0.00 44.84 4.02
3632 4795 5.362717 ACTCCGATGATATGTCCAAACTACA 59.637 40.000 0.00 0.00 0.00 2.74
3643 4806 6.540189 GGGAAATGGATTACTCCGATGATATG 59.460 42.308 0.00 0.00 45.37 1.78
3828 4991 9.948964 TGCGATAGTAAGTAATGATAGGTACTA 57.051 33.333 0.00 0.00 42.61 1.82
3830 4993 9.719279 GATGCGATAGTAAGTAATGATAGGTAC 57.281 37.037 0.00 0.00 39.35 3.34
3831 4994 9.682465 AGATGCGATAGTAAGTAATGATAGGTA 57.318 33.333 0.00 0.00 39.35 3.08
3871 5081 9.995003 AGCATGGAGATTAAACATAAACAAAAA 57.005 25.926 0.00 0.00 0.00 1.94
3907 5117 2.998316 ATAGCCAGAGGTTCTCAAGC 57.002 50.000 0.00 0.25 33.12 4.01
3933 5143 7.976007 GCCATAAGGTTTCCCCTGGGAATAG 62.976 52.000 18.14 0.00 45.47 1.73
3934 5144 6.238708 GCCATAAGGTTTCCCCTGGGAATA 62.239 50.000 18.14 8.28 45.47 1.75
3935 5145 5.560978 GCCATAAGGTTTCCCCTGGGAAT 62.561 52.174 18.14 6.28 45.47 3.01
3936 5146 4.303501 GCCATAAGGTTTCCCCTGGGAA 62.304 54.545 16.20 13.74 45.47 3.97
3938 5148 0.397114 GCCATAAGGTTTCCCCTGGG 60.397 60.000 5.50 5.50 45.47 4.45
3940 5150 1.384222 GCGCCATAAGGTTTCCCCTG 61.384 60.000 0.00 0.00 45.47 4.45
3942 5152 2.478033 CGCGCCATAAGGTTTCCCC 61.478 63.158 0.00 0.00 37.19 4.81
3972 5182 4.712122 ACTGAAACACAAAATGAACGGT 57.288 36.364 0.00 0.00 0.00 4.83
3998 5209 0.323087 TCTCCGTGTCGAATCCTCCA 60.323 55.000 0.00 0.00 0.00 3.86
4111 5322 1.497991 CCAGAGTTTCTCGCGAACAA 58.502 50.000 11.33 2.71 35.36 2.83
4113 5324 0.667792 AGCCAGAGTTTCTCGCGAAC 60.668 55.000 11.33 5.67 35.36 3.95
4114 5325 0.033504 AAGCCAGAGTTTCTCGCGAA 59.966 50.000 11.33 0.00 35.36 4.70
4115 5326 0.885879 TAAGCCAGAGTTTCTCGCGA 59.114 50.000 9.26 9.26 35.36 5.87
4116 5327 0.992802 GTAAGCCAGAGTTTCTCGCG 59.007 55.000 0.00 0.00 35.36 5.87
4118 5329 3.056465 AGAAGGTAAGCCAGAGTTTCTCG 60.056 47.826 0.00 0.00 35.36 4.04
4119 5330 4.500127 GAGAAGGTAAGCCAGAGTTTCTC 58.500 47.826 0.00 0.00 35.41 2.87
4120 5331 3.056465 CGAGAAGGTAAGCCAGAGTTTCT 60.056 47.826 0.00 0.00 37.19 2.52
4121 5332 3.254892 CGAGAAGGTAAGCCAGAGTTTC 58.745 50.000 0.00 0.00 37.19 2.78
4122 5333 2.028020 CCGAGAAGGTAAGCCAGAGTTT 60.028 50.000 0.00 0.00 37.19 2.66
4142 5354 2.094762 AACTGTCCGTCATGCTTACC 57.905 50.000 0.00 0.00 0.00 2.85
4152 5364 1.675552 CAACCCTTCAAACTGTCCGT 58.324 50.000 0.00 0.00 0.00 4.69
4169 5381 7.987750 AATACACAACATACATACACACCAA 57.012 32.000 0.00 0.00 0.00 3.67
4186 5398 3.471680 TGCTAGCACACACAAATACACA 58.528 40.909 14.93 0.00 0.00 3.72
4187 5399 4.154015 TCATGCTAGCACACACAAATACAC 59.846 41.667 22.07 0.00 0.00 2.90
4188 5400 4.322567 TCATGCTAGCACACACAAATACA 58.677 39.130 22.07 0.00 0.00 2.29
4207 5419 1.168714 GCCGAAGCTGGTTTCTTCAT 58.831 50.000 0.00 0.00 39.80 2.57
4230 5446 4.584638 ATGTTGCTACCAAATCCCTACA 57.415 40.909 0.00 0.00 31.68 2.74
4247 5463 3.581024 ATCGCATGTTTCAGCAATGTT 57.419 38.095 0.00 0.00 0.00 2.71
4273 5490 5.463286 TCTGCAAACTGAAAACATAGCATG 58.537 37.500 0.00 0.00 0.00 4.06
4275 5492 4.022935 CCTCTGCAAACTGAAAACATAGCA 60.023 41.667 0.00 0.00 0.00 3.49
4300 5517 2.755952 AAAGGAGCTTGAAACACCCT 57.244 45.000 0.00 0.00 0.00 4.34
4312 5529 5.363979 ACATTTTTCTCTCGAAAAGGAGC 57.636 39.130 0.00 0.00 46.45 4.70
4325 5542 7.148423 GGAACTGCAAACTGAAAACATTTTTCT 60.148 33.333 11.58 0.00 0.00 2.52
4331 5548 3.490761 CCGGAACTGCAAACTGAAAACAT 60.491 43.478 0.00 0.00 0.00 2.71
4362 5579 1.216710 CAGACTGGCGAGAGTTCCC 59.783 63.158 1.44 0.00 0.00 3.97
4364 5581 0.811915 TAGCAGACTGGCGAGAGTTC 59.188 55.000 1.44 0.00 39.27 3.01
4371 5588 0.531532 CCATTCCTAGCAGACTGGCG 60.532 60.000 4.26 0.00 39.27 5.69
4373 5590 0.179034 GCCCATTCCTAGCAGACTGG 60.179 60.000 4.26 0.00 36.57 4.00
4376 5593 0.249657 CTCGCCCATTCCTAGCAGAC 60.250 60.000 0.00 0.00 0.00 3.51
4391 5608 2.295909 AGATGACATCTTAGGAGCTCGC 59.704 50.000 12.37 0.47 35.76 5.03
4395 5612 3.554752 GGCTGAGATGACATCTTAGGAGC 60.555 52.174 28.76 24.35 41.74 4.70
4396 5613 3.305267 CGGCTGAGATGACATCTTAGGAG 60.305 52.174 28.76 18.60 41.74 3.69
4397 5614 2.625314 CGGCTGAGATGACATCTTAGGA 59.375 50.000 28.76 11.40 41.74 2.94
4398 5615 2.625314 TCGGCTGAGATGACATCTTAGG 59.375 50.000 28.76 18.01 41.74 2.69
4399 5616 3.998099 TCGGCTGAGATGACATCTTAG 57.002 47.619 25.58 25.58 43.62 2.18
4400 5617 4.736126 TTTCGGCTGAGATGACATCTTA 57.264 40.909 18.89 13.93 40.38 2.10
4401 5618 3.616956 TTTCGGCTGAGATGACATCTT 57.383 42.857 18.89 3.45 40.38 2.40
4402 5619 3.616956 TTTTCGGCTGAGATGACATCT 57.383 42.857 17.98 17.98 43.70 2.90
4403 5620 4.889832 AATTTTCGGCTGAGATGACATC 57.110 40.909 7.39 7.39 0.00 3.06
4404 5621 4.701651 TCAAATTTTCGGCTGAGATGACAT 59.298 37.500 0.00 0.00 0.00 3.06
4405 5622 4.071423 TCAAATTTTCGGCTGAGATGACA 58.929 39.130 0.00 0.00 0.00 3.58
4406 5623 4.685169 TCAAATTTTCGGCTGAGATGAC 57.315 40.909 0.00 0.00 0.00 3.06
4407 5624 5.460646 GTTTCAAATTTTCGGCTGAGATGA 58.539 37.500 0.00 0.00 0.00 2.92
4408 5625 4.622740 GGTTTCAAATTTTCGGCTGAGATG 59.377 41.667 0.00 0.00 0.00 2.90
4409 5626 4.280677 TGGTTTCAAATTTTCGGCTGAGAT 59.719 37.500 0.00 0.00 0.00 2.75
4410 5627 3.634448 TGGTTTCAAATTTTCGGCTGAGA 59.366 39.130 0.00 0.00 0.00 3.27
4411 5628 3.976169 TGGTTTCAAATTTTCGGCTGAG 58.024 40.909 0.00 0.00 0.00 3.35
4412 5629 4.280677 AGATGGTTTCAAATTTTCGGCTGA 59.719 37.500 0.00 0.00 0.00 4.26
4413 5630 4.559153 AGATGGTTTCAAATTTTCGGCTG 58.441 39.130 0.00 0.00 0.00 4.85
4414 5631 4.524328 AGAGATGGTTTCAAATTTTCGGCT 59.476 37.500 0.00 0.00 0.00 5.52
4415 5632 4.809673 AGAGATGGTTTCAAATTTTCGGC 58.190 39.130 0.00 0.00 0.00 5.54
4416 5633 8.810652 TTAAAGAGATGGTTTCAAATTTTCGG 57.189 30.769 0.00 0.00 0.00 4.30
4423 5640 9.567776 TCTACACATTAAAGAGATGGTTTCAAA 57.432 29.630 0.00 0.00 0.00 2.69
4424 5641 9.567776 TTCTACACATTAAAGAGATGGTTTCAA 57.432 29.630 0.00 0.00 0.00 2.69
4425 5642 9.739276 ATTCTACACATTAAAGAGATGGTTTCA 57.261 29.630 0.00 0.00 0.00 2.69
4498 5715 4.709840 GCACATCTGCACCTGAGT 57.290 55.556 0.00 0.00 43.62 3.41
4516 5733 4.343526 ACATTTCGGAGCTCAGATGTATCT 59.656 41.667 17.52 0.00 37.72 1.98
4517 5734 4.626042 ACATTTCGGAGCTCAGATGTATC 58.374 43.478 17.52 0.00 0.00 2.24
4518 5735 4.679373 ACATTTCGGAGCTCAGATGTAT 57.321 40.909 17.52 8.73 0.00 2.29
4519 5736 4.183865 CAACATTTCGGAGCTCAGATGTA 58.816 43.478 19.17 9.16 0.00 2.29
4520 5737 3.005554 CAACATTTCGGAGCTCAGATGT 58.994 45.455 17.52 16.01 0.00 3.06
4521 5738 2.223203 GCAACATTTCGGAGCTCAGATG 60.223 50.000 17.52 15.38 0.00 2.90
4522 5739 2.012673 GCAACATTTCGGAGCTCAGAT 58.987 47.619 17.52 0.43 0.00 2.90
4523 5740 1.002430 AGCAACATTTCGGAGCTCAGA 59.998 47.619 17.19 14.99 0.00 3.27
4524 5741 1.446907 AGCAACATTTCGGAGCTCAG 58.553 50.000 17.19 12.42 0.00 3.35
4525 5742 3.631453 AGCAACATTTCGGAGCTCA 57.369 47.368 17.19 0.00 0.00 4.26
4527 5744 2.191128 AAGAGCAACATTTCGGAGCT 57.809 45.000 0.00 0.00 38.43 4.09
4528 5745 2.997485 AAAGAGCAACATTTCGGAGC 57.003 45.000 0.00 0.00 0.00 4.70
4574 5791 9.386010 TGTAACAAGCTTCTGTTTTCTTAGTAA 57.614 29.630 8.99 0.00 40.08 2.24
4575 5792 8.823818 GTGTAACAAGCTTCTGTTTTCTTAGTA 58.176 33.333 8.99 0.00 40.08 1.82
4576 5793 7.201705 GGTGTAACAAGCTTCTGTTTTCTTAGT 60.202 37.037 8.99 0.00 40.08 2.24
4577 5794 7.012421 AGGTGTAACAAGCTTCTGTTTTCTTAG 59.988 37.037 8.99 0.00 40.08 2.18
4578 5795 6.826741 AGGTGTAACAAGCTTCTGTTTTCTTA 59.173 34.615 8.99 0.00 40.08 2.10
4579 5796 5.652452 AGGTGTAACAAGCTTCTGTTTTCTT 59.348 36.000 8.99 0.00 40.08 2.52
4580 5797 5.193679 AGGTGTAACAAGCTTCTGTTTTCT 58.806 37.500 8.99 0.88 40.08 2.52
4581 5798 5.500645 AGGTGTAACAAGCTTCTGTTTTC 57.499 39.130 8.99 4.68 40.08 2.29
4582 5799 5.298527 GGTAGGTGTAACAAGCTTCTGTTTT 59.701 40.000 8.99 0.00 40.08 2.43
4583 5800 4.820173 GGTAGGTGTAACAAGCTTCTGTTT 59.180 41.667 8.99 0.00 40.08 2.83
4584 5801 4.102681 AGGTAGGTGTAACAAGCTTCTGTT 59.897 41.667 8.74 8.74 42.20 3.16
4585 5802 3.646637 AGGTAGGTGTAACAAGCTTCTGT 59.353 43.478 0.00 0.00 39.98 3.41
4586 5803 4.273148 AGGTAGGTGTAACAAGCTTCTG 57.727 45.455 0.00 0.00 39.98 3.02
4587 5804 4.976540 AAGGTAGGTGTAACAAGCTTCT 57.023 40.909 0.00 0.00 37.47 2.85
4588 5805 4.320275 GCAAAGGTAGGTGTAACAAGCTTC 60.320 45.833 0.00 0.00 39.92 3.86
4589 5806 3.568430 GCAAAGGTAGGTGTAACAAGCTT 59.432 43.478 0.00 0.00 41.72 3.74
4590 5807 3.146847 GCAAAGGTAGGTGTAACAAGCT 58.853 45.455 0.00 0.00 39.98 3.74
4591 5808 2.882137 TGCAAAGGTAGGTGTAACAAGC 59.118 45.455 0.00 0.00 39.98 4.01
4592 5809 3.252458 GGTGCAAAGGTAGGTGTAACAAG 59.748 47.826 0.00 0.00 39.98 3.16
4593 5810 3.215975 GGTGCAAAGGTAGGTGTAACAA 58.784 45.455 0.00 0.00 39.98 2.83
4594 5811 2.172930 TGGTGCAAAGGTAGGTGTAACA 59.827 45.455 0.00 0.00 39.98 2.41
4595 5812 2.853705 TGGTGCAAAGGTAGGTGTAAC 58.146 47.619 0.00 0.00 0.00 2.50
4596 5813 3.117813 AGTTGGTGCAAAGGTAGGTGTAA 60.118 43.478 0.00 0.00 0.00 2.41
4597 5814 2.440253 AGTTGGTGCAAAGGTAGGTGTA 59.560 45.455 0.00 0.00 0.00 2.90
4598 5815 1.214424 AGTTGGTGCAAAGGTAGGTGT 59.786 47.619 0.00 0.00 0.00 4.16
4599 5816 1.981256 AGTTGGTGCAAAGGTAGGTG 58.019 50.000 0.00 0.00 0.00 4.00
4600 5817 3.868619 TTAGTTGGTGCAAAGGTAGGT 57.131 42.857 0.00 0.00 0.00 3.08
4601 5818 5.523438 TTTTTAGTTGGTGCAAAGGTAGG 57.477 39.130 0.00 0.00 0.00 3.18
4602 5819 8.303876 ACATATTTTTAGTTGGTGCAAAGGTAG 58.696 33.333 0.00 0.00 0.00 3.18
4603 5820 8.184304 ACATATTTTTAGTTGGTGCAAAGGTA 57.816 30.769 0.00 0.00 0.00 3.08
4604 5821 7.061566 ACATATTTTTAGTTGGTGCAAAGGT 57.938 32.000 0.00 0.00 0.00 3.50
4605 5822 8.085296 TGTACATATTTTTAGTTGGTGCAAAGG 58.915 33.333 0.00 0.00 0.00 3.11
4606 5823 9.469807 TTGTACATATTTTTAGTTGGTGCAAAG 57.530 29.630 0.00 0.00 0.00 2.77
4607 5824 9.988815 ATTGTACATATTTTTAGTTGGTGCAAA 57.011 25.926 0.00 0.00 34.16 3.68
4608 5825 9.632807 GATTGTACATATTTTTAGTTGGTGCAA 57.367 29.630 0.00 0.00 34.76 4.08
4609 5826 8.797438 TGATTGTACATATTTTTAGTTGGTGCA 58.203 29.630 0.00 0.00 0.00 4.57
4610 5827 9.632807 TTGATTGTACATATTTTTAGTTGGTGC 57.367 29.630 0.00 0.00 0.00 5.01
4634 5851 8.794406 GCGGTGTTTAATGTCTGTAATAATTTG 58.206 33.333 0.00 0.00 0.00 2.32
4635 5852 8.516234 TGCGGTGTTTAATGTCTGTAATAATTT 58.484 29.630 0.00 0.00 0.00 1.82
4636 5853 8.046294 TGCGGTGTTTAATGTCTGTAATAATT 57.954 30.769 0.00 0.00 0.00 1.40
4637 5854 7.618502 TGCGGTGTTTAATGTCTGTAATAAT 57.381 32.000 0.00 0.00 0.00 1.28
4638 5855 7.436430 TTGCGGTGTTTAATGTCTGTAATAA 57.564 32.000 0.00 0.00 0.00 1.40
4639 5856 7.436430 TTTGCGGTGTTTAATGTCTGTAATA 57.564 32.000 0.00 0.00 0.00 0.98
4640 5857 5.950758 TTGCGGTGTTTAATGTCTGTAAT 57.049 34.783 0.00 0.00 0.00 1.89
4641 5858 5.752892 TTTGCGGTGTTTAATGTCTGTAA 57.247 34.783 0.00 0.00 0.00 2.41
4642 5859 5.752892 TTTTGCGGTGTTTAATGTCTGTA 57.247 34.783 0.00 0.00 0.00 2.74
4643 5860 4.640789 TTTTGCGGTGTTTAATGTCTGT 57.359 36.364 0.00 0.00 0.00 3.41
4644 5861 4.981674 ACATTTTGCGGTGTTTAATGTCTG 59.018 37.500 0.00 0.00 35.20 3.51
4645 5862 5.195001 ACATTTTGCGGTGTTTAATGTCT 57.805 34.783 0.00 0.00 35.20 3.41
4646 5863 5.233263 ACAACATTTTGCGGTGTTTAATGTC 59.767 36.000 0.00 0.00 38.19 3.06
4647 5864 5.112686 ACAACATTTTGCGGTGTTTAATGT 58.887 33.333 0.00 0.00 40.17 2.71
4648 5865 5.233050 TGACAACATTTTGCGGTGTTTAATG 59.767 36.000 0.00 0.00 36.48 1.90
4649 5866 5.352284 TGACAACATTTTGCGGTGTTTAAT 58.648 33.333 0.00 0.00 36.48 1.40
4650 5867 4.744570 TGACAACATTTTGCGGTGTTTAA 58.255 34.783 0.00 0.00 36.48 1.52
4651 5868 4.371855 TGACAACATTTTGCGGTGTTTA 57.628 36.364 0.00 0.00 36.48 2.01
4652 5869 3.238108 TGACAACATTTTGCGGTGTTT 57.762 38.095 0.00 0.00 36.48 2.83
4653 5870 2.949451 TGACAACATTTTGCGGTGTT 57.051 40.000 0.00 0.00 39.00 3.32
4654 5871 2.360483 TGATGACAACATTTTGCGGTGT 59.640 40.909 0.00 0.00 36.82 4.16
4655 5872 3.010624 TGATGACAACATTTTGCGGTG 57.989 42.857 0.00 0.00 36.82 4.94
4656 5873 3.577667 CATGATGACAACATTTTGCGGT 58.422 40.909 0.00 0.00 36.82 5.68
4657 5874 2.924926 CCATGATGACAACATTTTGCGG 59.075 45.455 0.00 0.00 36.82 5.69
4658 5875 2.924926 CCCATGATGACAACATTTTGCG 59.075 45.455 0.00 0.00 36.82 4.85
4659 5876 3.928375 GACCCATGATGACAACATTTTGC 59.072 43.478 0.00 0.00 36.82 3.68
4660 5877 5.395682 AGACCCATGATGACAACATTTTG 57.604 39.130 0.00 0.00 36.82 2.44
4661 5878 7.537596 TTTAGACCCATGATGACAACATTTT 57.462 32.000 0.00 0.00 36.82 1.82
4662 5879 7.722949 ATTTAGACCCATGATGACAACATTT 57.277 32.000 0.00 0.00 36.82 2.32
4663 5880 7.013655 GCTATTTAGACCCATGATGACAACATT 59.986 37.037 0.00 0.00 36.82 2.71
4664 5881 6.488006 GCTATTTAGACCCATGATGACAACAT 59.512 38.462 0.00 0.00 39.67 2.71
4665 5882 5.822519 GCTATTTAGACCCATGATGACAACA 59.177 40.000 0.00 0.00 0.00 3.33
4666 5883 5.239525 GGCTATTTAGACCCATGATGACAAC 59.760 44.000 0.00 0.00 0.00 3.32
4667 5884 5.104151 TGGCTATTTAGACCCATGATGACAA 60.104 40.000 0.00 0.00 0.00 3.18
4668 5885 4.411869 TGGCTATTTAGACCCATGATGACA 59.588 41.667 0.00 0.00 0.00 3.58
4669 5886 4.973168 TGGCTATTTAGACCCATGATGAC 58.027 43.478 0.00 0.00 0.00 3.06
4670 5887 4.907269 TCTGGCTATTTAGACCCATGATGA 59.093 41.667 0.00 0.00 0.00 2.92
4671 5888 4.999950 GTCTGGCTATTTAGACCCATGATG 59.000 45.833 0.00 0.00 37.85 3.07
4672 5889 5.234466 GTCTGGCTATTTAGACCCATGAT 57.766 43.478 0.00 0.00 37.85 2.45
4673 5890 4.689612 GTCTGGCTATTTAGACCCATGA 57.310 45.455 0.00 0.00 37.85 3.07
4679 5896 7.822822 TGAAAACTTAGGTCTGGCTATTTAGAC 59.177 37.037 0.00 0.00 41.95 2.59
4680 5897 7.822822 GTGAAAACTTAGGTCTGGCTATTTAGA 59.177 37.037 0.00 0.00 0.00 2.10
4681 5898 7.201530 CGTGAAAACTTAGGTCTGGCTATTTAG 60.202 40.741 0.00 0.00 0.00 1.85
4682 5899 6.592607 CGTGAAAACTTAGGTCTGGCTATTTA 59.407 38.462 0.00 0.00 0.00 1.40
4683 5900 5.411669 CGTGAAAACTTAGGTCTGGCTATTT 59.588 40.000 0.00 0.00 0.00 1.40
4684 5901 4.935808 CGTGAAAACTTAGGTCTGGCTATT 59.064 41.667 0.00 0.00 0.00 1.73
4685 5902 4.222145 TCGTGAAAACTTAGGTCTGGCTAT 59.778 41.667 0.00 0.00 0.00 2.97
4686 5903 3.575256 TCGTGAAAACTTAGGTCTGGCTA 59.425 43.478 0.00 0.00 0.00 3.93
4687 5904 2.367567 TCGTGAAAACTTAGGTCTGGCT 59.632 45.455 0.00 0.00 0.00 4.75
4688 5905 2.762745 TCGTGAAAACTTAGGTCTGGC 58.237 47.619 0.00 0.00 0.00 4.85
4689 5906 6.164176 ACTTATCGTGAAAACTTAGGTCTGG 58.836 40.000 0.00 0.00 0.00 3.86
4690 5907 7.811236 TGTACTTATCGTGAAAACTTAGGTCTG 59.189 37.037 0.00 0.00 0.00 3.51
4691 5908 7.889469 TGTACTTATCGTGAAAACTTAGGTCT 58.111 34.615 0.00 0.00 0.00 3.85
4692 5909 8.524870 TTGTACTTATCGTGAAAACTTAGGTC 57.475 34.615 0.00 0.00 0.00 3.85
4693 5910 8.891671 TTTGTACTTATCGTGAAAACTTAGGT 57.108 30.769 0.00 0.00 0.00 3.08
4729 5946 6.706716 TGTTGGTGTGATTAACGTTTCTCATA 59.293 34.615 5.91 5.65 0.00 2.15
4738 5955 3.233578 GCATGTGTTGGTGTGATTAACG 58.766 45.455 0.00 0.00 0.00 3.18
4768 5985 3.357079 GACAGTGGTGGCGGCAAG 61.357 66.667 15.50 4.09 0.00 4.01
4770 5987 4.182433 TTGACAGTGGTGGCGGCA 62.182 61.111 7.97 7.97 32.20 5.69
4773 5990 0.603707 ATGTCTTGACAGTGGTGGCG 60.604 55.000 9.39 0.00 32.20 5.69
4776 5993 1.596603 TGCATGTCTTGACAGTGGTG 58.403 50.000 9.39 4.08 0.00 4.17
4803 6021 8.824756 AAATAGATCTAGTGGTCTGTTGTCTA 57.175 34.615 8.70 0.00 0.00 2.59
4806 6024 6.377429 TCGAAATAGATCTAGTGGTCTGTTGT 59.623 38.462 8.70 0.00 0.00 3.32
4812 6030 7.168302 CACATTGTCGAAATAGATCTAGTGGTC 59.832 40.741 8.70 0.46 0.00 4.02
4835 6053 0.749649 GTGTGATGTTTTGGCCCACA 59.250 50.000 0.00 1.83 35.65 4.17
4872 6090 6.428385 AAAATTCTTGTGGCTCTATCTTCG 57.572 37.500 0.00 0.00 0.00 3.79
4894 6112 3.376859 ACAGACAATGTCACGCAGAAAAA 59.623 39.130 16.38 0.00 37.75 1.94
4895 6113 2.942376 ACAGACAATGTCACGCAGAAAA 59.058 40.909 16.38 0.00 37.75 2.29
4896 6114 2.560504 ACAGACAATGTCACGCAGAAA 58.439 42.857 16.38 0.00 37.75 2.52
4897 6115 2.238942 ACAGACAATGTCACGCAGAA 57.761 45.000 16.38 0.00 37.75 3.02
4898 6116 2.609491 GGTACAGACAATGTCACGCAGA 60.609 50.000 16.38 0.00 42.70 4.26
4899 6117 1.726791 GGTACAGACAATGTCACGCAG 59.273 52.381 16.38 2.63 42.70 5.18
4900 6118 1.606994 GGGTACAGACAATGTCACGCA 60.607 52.381 16.38 0.00 42.70 5.24
4901 6119 1.076332 GGGTACAGACAATGTCACGC 58.924 55.000 16.38 9.57 42.70 5.34
4902 6120 2.743636 AGGGTACAGACAATGTCACG 57.256 50.000 16.38 8.60 42.70 4.35
4903 6121 4.392138 GCTTAAGGGTACAGACAATGTCAC 59.608 45.833 16.38 5.01 42.70 3.67
4904 6122 4.286032 AGCTTAAGGGTACAGACAATGTCA 59.714 41.667 16.38 0.00 42.70 3.58
4905 6123 4.833390 AGCTTAAGGGTACAGACAATGTC 58.167 43.478 5.02 5.02 42.70 3.06
4906 6124 4.910458 AGCTTAAGGGTACAGACAATGT 57.090 40.909 4.29 0.00 46.45 2.71
4907 6125 4.330074 CGAAGCTTAAGGGTACAGACAATG 59.670 45.833 0.00 0.00 0.00 2.82
4908 6126 4.504858 CGAAGCTTAAGGGTACAGACAAT 58.495 43.478 0.00 0.00 0.00 2.71
4909 6127 3.921677 CGAAGCTTAAGGGTACAGACAA 58.078 45.455 0.00 0.00 0.00 3.18
4910 6128 3.587797 CGAAGCTTAAGGGTACAGACA 57.412 47.619 0.00 0.00 0.00 3.41
4926 6144 7.715265 AGTTTATGTATCATTAGTGGCGAAG 57.285 36.000 0.00 0.00 0.00 3.79
4927 6145 7.384115 GCTAGTTTATGTATCATTAGTGGCGAA 59.616 37.037 0.00 0.00 0.00 4.70
4928 6146 6.866770 GCTAGTTTATGTATCATTAGTGGCGA 59.133 38.462 0.00 0.00 0.00 5.54
4929 6147 6.645003 TGCTAGTTTATGTATCATTAGTGGCG 59.355 38.462 0.00 0.00 0.00 5.69
4930 6148 7.962964 TGCTAGTTTATGTATCATTAGTGGC 57.037 36.000 0.00 0.00 0.00 5.01
4947 6165 9.626045 GCTAATTAGTTGTTTTCAATGCTAGTT 57.374 29.630 13.91 0.00 42.08 2.24
4948 6166 9.014297 AGCTAATTAGTTGTTTTCAATGCTAGT 57.986 29.630 13.91 0.00 42.08 2.57
4949 6167 9.282247 CAGCTAATTAGTTGTTTTCAATGCTAG 57.718 33.333 18.33 0.00 42.08 3.42
4950 6168 7.754924 GCAGCTAATTAGTTGTTTTCAATGCTA 59.245 33.333 24.68 0.00 42.08 3.49
4951 6169 6.587608 GCAGCTAATTAGTTGTTTTCAATGCT 59.412 34.615 24.68 6.26 42.08 3.79
4952 6170 6.365789 TGCAGCTAATTAGTTGTTTTCAATGC 59.634 34.615 24.68 11.65 42.08 3.56
4953 6171 7.872163 TGCAGCTAATTAGTTGTTTTCAATG 57.128 32.000 24.68 3.01 42.08 2.82
4954 6172 7.546667 CCATGCAGCTAATTAGTTGTTTTCAAT 59.453 33.333 24.68 10.62 42.08 2.57
4955 6173 6.867816 CCATGCAGCTAATTAGTTGTTTTCAA 59.132 34.615 24.68 9.20 36.95 2.69
4956 6174 6.208402 TCCATGCAGCTAATTAGTTGTTTTCA 59.792 34.615 24.68 16.58 36.95 2.69
4957 6175 6.620678 TCCATGCAGCTAATTAGTTGTTTTC 58.379 36.000 24.68 12.42 36.95 2.29
4958 6176 6.434028 TCTCCATGCAGCTAATTAGTTGTTTT 59.566 34.615 24.68 11.32 36.95 2.43
4959 6177 5.945784 TCTCCATGCAGCTAATTAGTTGTTT 59.054 36.000 24.68 13.32 36.95 2.83
4960 6178 5.500234 TCTCCATGCAGCTAATTAGTTGTT 58.500 37.500 24.68 13.61 36.95 2.83
4961 6179 5.102953 TCTCCATGCAGCTAATTAGTTGT 57.897 39.130 24.68 8.48 36.95 3.32
4962 6180 5.355071 TGTTCTCCATGCAGCTAATTAGTTG 59.645 40.000 21.30 21.30 37.55 3.16
4963 6181 5.500234 TGTTCTCCATGCAGCTAATTAGTT 58.500 37.500 13.91 5.13 0.00 2.24
4964 6182 5.102953 TGTTCTCCATGCAGCTAATTAGT 57.897 39.130 13.91 0.00 0.00 2.24
4965 6183 5.998553 CATGTTCTCCATGCAGCTAATTAG 58.001 41.667 8.20 8.20 44.21 1.73
4967 6185 4.913335 CATGTTCTCCATGCAGCTAATT 57.087 40.909 0.00 0.00 44.21 1.40
4981 6199 2.146342 CCGTGTGAGAAAGCATGTTCT 58.854 47.619 0.00 0.00 40.62 3.01
4982 6200 1.873591 ACCGTGTGAGAAAGCATGTTC 59.126 47.619 0.00 0.00 0.00 3.18
4983 6201 1.967319 ACCGTGTGAGAAAGCATGTT 58.033 45.000 0.00 0.00 0.00 2.71
4984 6202 1.967319 AACCGTGTGAGAAAGCATGT 58.033 45.000 0.00 0.00 0.00 3.21
4985 6203 2.605338 CCAAACCGTGTGAGAAAGCATG 60.605 50.000 0.00 0.00 0.00 4.06
4986 6204 1.608590 CCAAACCGTGTGAGAAAGCAT 59.391 47.619 0.00 0.00 0.00 3.79
4987 6205 1.021202 CCAAACCGTGTGAGAAAGCA 58.979 50.000 0.00 0.00 0.00 3.91
4988 6206 1.002792 GACCAAACCGTGTGAGAAAGC 60.003 52.381 0.00 0.00 0.00 3.51
4989 6207 1.260561 CGACCAAACCGTGTGAGAAAG 59.739 52.381 0.00 0.00 0.00 2.62
4990 6208 1.292061 CGACCAAACCGTGTGAGAAA 58.708 50.000 0.00 0.00 0.00 2.52
4991 6209 1.155424 GCGACCAAACCGTGTGAGAA 61.155 55.000 0.00 0.00 0.00 2.87
4992 6210 1.593209 GCGACCAAACCGTGTGAGA 60.593 57.895 0.00 0.00 0.00 3.27
4993 6211 1.885388 TGCGACCAAACCGTGTGAG 60.885 57.895 0.00 0.00 0.00 3.51
4994 6212 2.174969 GTGCGACCAAACCGTGTGA 61.175 57.895 0.00 0.00 0.00 3.58
4995 6213 0.876777 TAGTGCGACCAAACCGTGTG 60.877 55.000 0.00 0.00 0.00 3.82
4996 6214 0.034337 ATAGTGCGACCAAACCGTGT 59.966 50.000 0.00 0.00 0.00 4.49
4997 6215 1.127951 GAATAGTGCGACCAAACCGTG 59.872 52.381 0.00 0.00 0.00 4.94
4998 6216 1.001633 AGAATAGTGCGACCAAACCGT 59.998 47.619 0.00 0.00 0.00 4.83
4999 6217 1.722011 AGAATAGTGCGACCAAACCG 58.278 50.000 0.00 0.00 0.00 4.44
5000 6218 2.812011 ACAAGAATAGTGCGACCAAACC 59.188 45.455 0.00 0.00 0.00 3.27
5001 6219 4.024387 TGAACAAGAATAGTGCGACCAAAC 60.024 41.667 0.00 0.00 0.00 2.93
5002 6220 4.130857 TGAACAAGAATAGTGCGACCAAA 58.869 39.130 0.00 0.00 0.00 3.28
5003 6221 3.734463 TGAACAAGAATAGTGCGACCAA 58.266 40.909 0.00 0.00 0.00 3.67
5004 6222 3.006430 TCTGAACAAGAATAGTGCGACCA 59.994 43.478 0.00 0.00 29.54 4.02
5005 6223 3.368236 GTCTGAACAAGAATAGTGCGACC 59.632 47.826 0.00 0.00 36.40 4.79
5006 6224 3.987868 TGTCTGAACAAGAATAGTGCGAC 59.012 43.478 0.00 0.00 36.40 5.19
5007 6225 4.237724 CTGTCTGAACAAGAATAGTGCGA 58.762 43.478 0.00 0.00 36.40 5.10
5008 6226 3.990469 ACTGTCTGAACAAGAATAGTGCG 59.010 43.478 0.00 0.00 36.40 5.34
5009 6227 5.698545 AGAACTGTCTGAACAAGAATAGTGC 59.301 40.000 0.00 0.00 35.72 4.40
5010 6228 8.818141 TTAGAACTGTCTGAACAAGAATAGTG 57.182 34.615 0.00 0.00 35.72 2.74
5034 6252 9.643778 TTGAAGGGGGAAATAGGTATATCTATT 57.356 33.333 11.79 11.79 40.50 1.73
5035 6253 9.820260 ATTGAAGGGGGAAATAGGTATATCTAT 57.180 33.333 0.00 0.00 0.00 1.98
5036 6254 9.057911 CATTGAAGGGGGAAATAGGTATATCTA 57.942 37.037 0.00 0.00 0.00 1.98
5037 6255 7.521115 ACATTGAAGGGGGAAATAGGTATATCT 59.479 37.037 0.00 0.00 0.00 1.98
5038 6256 7.699878 ACATTGAAGGGGGAAATAGGTATATC 58.300 38.462 0.00 0.00 0.00 1.63
5039 6257 7.528881 CGACATTGAAGGGGGAAATAGGTATAT 60.529 40.741 0.00 0.00 0.00 0.86
5040 6258 6.239772 CGACATTGAAGGGGGAAATAGGTATA 60.240 42.308 0.00 0.00 0.00 1.47
5041 6259 5.456186 CGACATTGAAGGGGGAAATAGGTAT 60.456 44.000 0.00 0.00 0.00 2.73
5042 6260 4.141574 CGACATTGAAGGGGGAAATAGGTA 60.142 45.833 0.00 0.00 0.00 3.08
5043 6261 3.371595 CGACATTGAAGGGGGAAATAGGT 60.372 47.826 0.00 0.00 0.00 3.08
5044 6262 3.214328 CGACATTGAAGGGGGAAATAGG 58.786 50.000 0.00 0.00 0.00 2.57
5045 6263 2.618709 GCGACATTGAAGGGGGAAATAG 59.381 50.000 0.00 0.00 0.00 1.73
5046 6264 2.241176 AGCGACATTGAAGGGGGAAATA 59.759 45.455 0.00 0.00 0.00 1.40
5047 6265 1.005924 AGCGACATTGAAGGGGGAAAT 59.994 47.619 0.00 0.00 0.00 2.17
5048 6266 0.404040 AGCGACATTGAAGGGGGAAA 59.596 50.000 0.00 0.00 0.00 3.13
5049 6267 0.404040 AAGCGACATTGAAGGGGGAA 59.596 50.000 0.00 0.00 0.00 3.97
5050 6268 0.322456 CAAGCGACATTGAAGGGGGA 60.322 55.000 0.00 0.00 31.55 4.81
5051 6269 0.322456 TCAAGCGACATTGAAGGGGG 60.322 55.000 0.00 0.00 36.28 5.40
5052 6270 1.672881 GATCAAGCGACATTGAAGGGG 59.327 52.381 2.84 0.00 42.21 4.79
5053 6271 1.672881 GGATCAAGCGACATTGAAGGG 59.327 52.381 0.00 0.00 42.21 3.95
5054 6272 2.358957 TGGATCAAGCGACATTGAAGG 58.641 47.619 0.00 0.00 42.21 3.46
5055 6273 4.206698 GATGGATCAAGCGACATTGAAG 57.793 45.455 0.00 0.00 42.21 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.