Multiple sequence alignment - TraesCS7A01G309600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G309600 chr7A 100.000 3671 0 0 1 3671 437608137 437611807 0.000000e+00 6780.0
1 TraesCS7A01G309600 chr7D 96.083 3115 84 14 219 3306 387493715 387496818 0.000000e+00 5042.0
2 TraesCS7A01G309600 chr7D 78.596 285 47 10 3350 3623 564063155 564062874 3.770000e-40 176.0
3 TraesCS7A01G309600 chr7D 95.714 70 3 0 1 70 387492065 387492134 3.000000e-21 113.0
4 TraesCS7A01G309600 chr7D 100.000 49 0 0 3623 3671 387496822 387496870 1.400000e-14 91.6
5 TraesCS7A01G309600 chr7B 96.550 2145 58 11 612 2748 382519044 382521180 0.000000e+00 3537.0
6 TraesCS7A01G309600 chr7B 92.208 616 39 5 1 609 382518399 382519012 0.000000e+00 863.0
7 TraesCS7A01G309600 chr7B 95.169 207 10 0 2792 2998 382521180 382521386 9.830000e-86 327.0
8 TraesCS7A01G309600 chr7B 88.793 116 13 0 3197 3312 395247555 395247670 3.820000e-30 143.0
9 TraesCS7A01G309600 chr6D 84.735 1415 206 10 1226 2635 318350671 318349262 0.000000e+00 1408.0
10 TraesCS7A01G309600 chr6D 73.643 258 51 12 62 316 125977390 125977633 2.350000e-12 84.2
11 TraesCS7A01G309600 chr6A 84.605 1416 206 12 1226 2635 455941935 455940526 0.000000e+00 1397.0
12 TraesCS7A01G309600 chr6A 86.667 60 4 4 3065 3122 235028720 235028777 3.060000e-06 63.9
13 TraesCS7A01G309600 chr6A 82.609 69 9 3 3051 3119 176352514 176352579 1.420000e-04 58.4
14 TraesCS7A01G309600 chr6B 84.040 1416 214 11 1226 2635 505798621 505800030 0.000000e+00 1352.0
15 TraesCS7A01G309600 chr6B 75.243 206 33 15 3051 3245 274558344 274558146 8.450000e-12 82.4
16 TraesCS7A01G309600 chr4D 89.130 322 26 6 3308 3623 488484657 488484339 3.440000e-105 392.0
17 TraesCS7A01G309600 chr1B 88.542 288 23 7 3312 3593 645497337 645497054 1.260000e-89 340.0
18 TraesCS7A01G309600 chr4B 85.333 75 5 6 3066 3137 493043581 493043652 5.090000e-09 73.1
19 TraesCS7A01G309600 chr5D 85.915 71 3 6 3051 3120 104096078 104096142 6.580000e-08 69.4
20 TraesCS7A01G309600 chr3B 88.525 61 2 5 3047 3105 479612479 479612536 6.580000e-08 69.4
21 TraesCS7A01G309600 chr2D 81.395 86 10 6 3041 3122 194673921 194673838 8.510000e-07 65.8
22 TraesCS7A01G309600 chr1D 91.304 46 4 0 104 149 386948681 386948726 3.060000e-06 63.9
23 TraesCS7A01G309600 chr5A 84.848 66 5 4 3066 3130 361894602 361894663 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G309600 chr7A 437608137 437611807 3670 False 6780.000000 6780 100.000000 1 3671 1 chr7A.!!$F1 3670
1 TraesCS7A01G309600 chr7D 387492065 387496870 4805 False 1748.866667 5042 97.265667 1 3671 3 chr7D.!!$F1 3670
2 TraesCS7A01G309600 chr7B 382518399 382521386 2987 False 1575.666667 3537 94.642333 1 2998 3 chr7B.!!$F2 2997
3 TraesCS7A01G309600 chr6D 318349262 318350671 1409 True 1408.000000 1408 84.735000 1226 2635 1 chr6D.!!$R1 1409
4 TraesCS7A01G309600 chr6A 455940526 455941935 1409 True 1397.000000 1397 84.605000 1226 2635 1 chr6A.!!$R1 1409
5 TraesCS7A01G309600 chr6B 505798621 505800030 1409 False 1352.000000 1352 84.040000 1226 2635 1 chr6B.!!$F1 1409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 1661 0.251653 AGTTCAGGTCGGCTCTGGTA 60.252 55.0 5.80 0.0 33.36 3.25 F
736 2282 0.681175 GCATGGCCACCTTGACTTTT 59.319 50.0 8.16 0.0 31.33 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1845 3407 1.064832 GGGAAGAAGAGCTGCCAGAAT 60.065 52.381 0.0 0.0 45.26 2.40 R
2716 4278 6.923508 GGCACTTTCTTGTTTGCTTATTAGTT 59.076 34.615 0.0 0.0 35.24 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.648009 TCATTGCGCATATATGACGACA 58.352 40.909 24.24 19.33 32.02 4.35
122 1617 1.623811 AGTTCTTAGGGACACGTGCAT 59.376 47.619 17.22 0.00 0.00 3.96
145 1640 5.541845 TGAAGACTTTCGACTGTCATTGAT 58.458 37.500 16.24 0.00 36.04 2.57
157 1652 5.171476 ACTGTCATTGATAAGTTCAGGTCG 58.829 41.667 5.14 0.00 35.27 4.79
159 1654 3.309954 GTCATTGATAAGTTCAGGTCGGC 59.690 47.826 0.00 0.00 35.27 5.54
162 1657 2.457598 TGATAAGTTCAGGTCGGCTCT 58.542 47.619 0.00 0.00 0.00 4.09
164 1659 0.895530 TAAGTTCAGGTCGGCTCTGG 59.104 55.000 5.80 0.00 33.36 3.86
166 1661 0.251653 AGTTCAGGTCGGCTCTGGTA 60.252 55.000 5.80 0.00 33.36 3.25
167 1662 0.824759 GTTCAGGTCGGCTCTGGTAT 59.175 55.000 5.80 0.00 33.36 2.73
168 1663 0.824109 TTCAGGTCGGCTCTGGTATG 59.176 55.000 5.80 0.00 33.36 2.39
170 1665 1.043116 CAGGTCGGCTCTGGTATGGA 61.043 60.000 0.00 0.00 0.00 3.41
181 1681 1.448893 GGTATGGAAGCGGCGACAA 60.449 57.895 12.98 0.00 0.00 3.18
212 1712 4.789075 GCTCGTTCTGGCGGCGTA 62.789 66.667 9.37 0.00 0.00 4.42
214 1714 2.126228 TCGTTCTGGCGGCGTAAG 60.126 61.111 9.37 6.70 43.44 2.34
234 1734 2.238646 AGTGGTTGTTCAGTGGTTCAGA 59.761 45.455 0.00 0.00 0.00 3.27
240 1740 2.365617 TGTTCAGTGGTTCAGAGACCTC 59.634 50.000 0.00 0.00 40.47 3.85
243 1743 1.068194 CAGTGGTTCAGAGACCTCGAC 60.068 57.143 0.00 0.00 40.47 4.20
263 1763 9.027129 CCTCGACGTAATTTTCATTATACTTGA 57.973 33.333 0.00 0.00 0.00 3.02
337 1837 2.309898 AAAGAAAACGCATTCGACGG 57.690 45.000 0.00 0.00 39.41 4.79
394 1894 7.918562 GCATTGCCTCGAAAATTAAATAAGGTA 59.081 33.333 0.00 0.00 0.00 3.08
432 1933 2.517650 TGTTTCACGGGGCAAATTTC 57.482 45.000 0.00 0.00 0.00 2.17
469 1970 5.030295 GCGGTTGATGACTTTGATGTTATG 58.970 41.667 0.00 0.00 0.00 1.90
609 2147 6.534436 CACTCTTCATCTCCTTTCACTGTATG 59.466 42.308 0.00 0.00 0.00 2.39
610 2148 6.212388 ACTCTTCATCTCCTTTCACTGTATGT 59.788 38.462 0.00 0.00 0.00 2.29
611 2149 6.634805 TCTTCATCTCCTTTCACTGTATGTC 58.365 40.000 0.00 0.00 0.00 3.06
612 2150 6.438741 TCTTCATCTCCTTTCACTGTATGTCT 59.561 38.462 0.00 0.00 0.00 3.41
613 2151 5.970592 TCATCTCCTTTCACTGTATGTCTG 58.029 41.667 0.00 0.00 0.00 3.51
614 2152 5.481824 TCATCTCCTTTCACTGTATGTCTGT 59.518 40.000 0.00 0.00 0.00 3.41
615 2153 6.663523 TCATCTCCTTTCACTGTATGTCTGTA 59.336 38.462 0.00 0.00 0.00 2.74
616 2154 7.343057 TCATCTCCTTTCACTGTATGTCTGTAT 59.657 37.037 0.00 0.00 0.00 2.29
736 2282 0.681175 GCATGGCCACCTTGACTTTT 59.319 50.000 8.16 0.00 31.33 2.27
737 2283 1.070601 GCATGGCCACCTTGACTTTTT 59.929 47.619 8.16 0.00 31.33 1.94
937 2487 1.213013 CACACCCTCCTCTCGTTCG 59.787 63.158 0.00 0.00 0.00 3.95
938 2488 2.182030 CACCCTCCTCTCGTTCGC 59.818 66.667 0.00 0.00 0.00 4.70
963 2525 1.217779 GCTTCCGCTTCTCTGCTCT 59.782 57.895 0.00 0.00 0.00 4.09
1353 2915 2.571757 GTCGACCTCGGCATGTCA 59.428 61.111 3.51 0.00 44.43 3.58
1586 3148 2.537714 ATCTTCCTCCTCCTGCCGGT 62.538 60.000 1.90 0.00 0.00 5.28
1674 3236 1.309499 CGTGCCTCCTCGTCTTCTCT 61.309 60.000 0.00 0.00 0.00 3.10
1827 3389 2.759973 ATCCTCTCGCTTCCGCCA 60.760 61.111 0.00 0.00 0.00 5.69
2975 4544 5.473039 GACTGCATGTATTTTTCTTTGCCT 58.527 37.500 0.00 0.00 0.00 4.75
2980 4549 6.158598 GCATGTATTTTTCTTTGCCTCAGAA 58.841 36.000 0.00 0.00 0.00 3.02
2999 4568 4.324402 CAGAACCAAAGCGCATAATGTTTC 59.676 41.667 11.47 7.03 0.00 2.78
3011 4580 4.201881 GCATAATGTTTCGGTACCTTGGAC 60.202 45.833 10.90 4.14 0.00 4.02
3056 4625 4.635324 CAGGCCTCATTTGTTTGTTTGTTT 59.365 37.500 0.00 0.00 0.00 2.83
3146 4715 9.759259 GCCAGCAAAACAATATAAAGAAAATTC 57.241 29.630 0.00 0.00 0.00 2.17
3168 4737 6.061022 TCAACCTATGCTGGTTCTATGAAA 57.939 37.500 6.42 0.00 46.37 2.69
3211 4780 5.164233 GTTTTGTCCTACCTAACTACCGAC 58.836 45.833 0.00 0.00 0.00 4.79
3255 4824 3.182967 GCCTTGATCTGAGTAGTTCACG 58.817 50.000 0.00 0.00 33.53 4.35
3256 4825 3.775202 CCTTGATCTGAGTAGTTCACGG 58.225 50.000 0.00 0.00 36.39 4.94
3278 4847 5.357032 CGGTCCTTCCTGTAAATAATGCTTT 59.643 40.000 0.00 0.00 0.00 3.51
3306 4875 1.131883 GAATGTGTGGTGCAGCTGATC 59.868 52.381 20.43 9.02 0.00 2.92
3308 4877 0.975887 TGTGTGGTGCAGCTGATCTA 59.024 50.000 20.43 4.08 0.00 1.98
3312 4881 2.012673 GTGGTGCAGCTGATCTAAAGG 58.987 52.381 20.43 0.00 0.00 3.11
3313 4882 1.020437 GGTGCAGCTGATCTAAAGGC 58.980 55.000 20.43 0.00 0.00 4.35
3314 4883 1.679944 GGTGCAGCTGATCTAAAGGCA 60.680 52.381 20.43 0.81 0.00 4.75
3315 4884 2.295885 GTGCAGCTGATCTAAAGGCAT 58.704 47.619 20.43 0.00 31.92 4.40
3316 4885 2.290093 GTGCAGCTGATCTAAAGGCATC 59.710 50.000 20.43 0.00 31.92 3.91
3317 4886 2.172082 TGCAGCTGATCTAAAGGCATCT 59.828 45.455 20.43 0.00 0.00 2.90
3318 4887 3.389002 TGCAGCTGATCTAAAGGCATCTA 59.611 43.478 20.43 0.00 0.00 1.98
3319 4888 3.745458 GCAGCTGATCTAAAGGCATCTAC 59.255 47.826 20.43 0.00 0.00 2.59
3320 4889 4.741837 GCAGCTGATCTAAAGGCATCTACA 60.742 45.833 20.43 0.00 0.00 2.74
3321 4890 5.363101 CAGCTGATCTAAAGGCATCTACAA 58.637 41.667 8.42 0.00 0.00 2.41
3322 4891 5.996513 CAGCTGATCTAAAGGCATCTACAAT 59.003 40.000 8.42 0.00 0.00 2.71
3323 4892 5.996513 AGCTGATCTAAAGGCATCTACAATG 59.003 40.000 0.00 0.00 0.00 2.82
3324 4893 5.334724 GCTGATCTAAAGGCATCTACAATGC 60.335 44.000 1.40 1.40 43.85 3.56
3325 4894 5.683681 TGATCTAAAGGCATCTACAATGCA 58.316 37.500 11.69 0.00 46.21 3.96
3326 4895 6.121590 TGATCTAAAGGCATCTACAATGCAA 58.878 36.000 11.69 0.00 46.21 4.08
3327 4896 6.602803 TGATCTAAAGGCATCTACAATGCAAA 59.397 34.615 11.69 0.00 46.21 3.68
3328 4897 6.441093 TCTAAAGGCATCTACAATGCAAAG 57.559 37.500 11.69 3.86 46.21 2.77
3329 4898 6.179756 TCTAAAGGCATCTACAATGCAAAGA 58.820 36.000 11.69 5.79 46.21 2.52
3330 4899 5.927281 AAAGGCATCTACAATGCAAAGAT 57.073 34.783 11.69 0.00 46.21 2.40
3331 4900 4.913335 AGGCATCTACAATGCAAAGATG 57.087 40.909 19.47 19.47 46.11 2.90
3344 4913 2.195922 CAAAGATGCTTATTTGGGCGC 58.804 47.619 10.89 0.00 33.68 6.53
3345 4914 1.767759 AAGATGCTTATTTGGGCGCT 58.232 45.000 7.64 0.00 0.00 5.92
3346 4915 1.767759 AGATGCTTATTTGGGCGCTT 58.232 45.000 7.64 0.00 0.00 4.68
3347 4916 2.930950 AGATGCTTATTTGGGCGCTTA 58.069 42.857 7.64 0.00 0.00 3.09
3348 4917 2.880890 AGATGCTTATTTGGGCGCTTAG 59.119 45.455 7.64 0.00 0.00 2.18
3349 4918 2.411628 TGCTTATTTGGGCGCTTAGA 57.588 45.000 7.64 0.00 0.00 2.10
3350 4919 2.014128 TGCTTATTTGGGCGCTTAGAC 58.986 47.619 7.64 0.00 0.00 2.59
3351 4920 2.014128 GCTTATTTGGGCGCTTAGACA 58.986 47.619 7.64 0.00 0.00 3.41
3352 4921 2.422127 GCTTATTTGGGCGCTTAGACAA 59.578 45.455 7.64 2.60 0.00 3.18
3353 4922 3.066760 GCTTATTTGGGCGCTTAGACAAT 59.933 43.478 7.64 0.35 0.00 2.71
3354 4923 4.274950 GCTTATTTGGGCGCTTAGACAATA 59.725 41.667 7.64 0.00 0.00 1.90
3355 4924 5.220970 GCTTATTTGGGCGCTTAGACAATAA 60.221 40.000 7.64 7.33 0.00 1.40
3356 4925 6.679392 GCTTATTTGGGCGCTTAGACAATAAA 60.679 38.462 7.64 2.94 0.00 1.40
3357 4926 5.652994 ATTTGGGCGCTTAGACAATAAAA 57.347 34.783 7.64 0.00 0.00 1.52
3358 4927 5.455056 TTTGGGCGCTTAGACAATAAAAA 57.545 34.783 7.64 0.00 0.00 1.94
3388 4957 7.757242 AAGAAAATAAGATCAGGGTAGGAGT 57.243 36.000 0.00 0.00 0.00 3.85
3389 4958 7.368198 AGAAAATAAGATCAGGGTAGGAGTC 57.632 40.000 0.00 0.00 0.00 3.36
3390 4959 7.136203 AGAAAATAAGATCAGGGTAGGAGTCT 58.864 38.462 0.00 0.00 0.00 3.24
3391 4960 6.739331 AAATAAGATCAGGGTAGGAGTCTG 57.261 41.667 0.00 0.00 0.00 3.51
3392 4961 2.080654 AGATCAGGGTAGGAGTCTGC 57.919 55.000 0.00 0.00 0.00 4.26
3393 4962 1.044611 GATCAGGGTAGGAGTCTGCC 58.955 60.000 0.00 0.00 43.89 4.85
3394 4963 0.639392 ATCAGGGTAGGAGTCTGCCT 59.361 55.000 0.94 0.00 44.04 4.75
3395 4964 0.324738 TCAGGGTAGGAGTCTGCCTG 60.325 60.000 0.00 0.00 44.04 4.85
3396 4965 0.616111 CAGGGTAGGAGTCTGCCTGT 60.616 60.000 0.00 0.00 44.04 4.00
3397 4966 0.324830 AGGGTAGGAGTCTGCCTGTC 60.325 60.000 0.00 0.00 44.04 3.51
3398 4967 1.331399 GGGTAGGAGTCTGCCTGTCC 61.331 65.000 0.00 0.00 44.04 4.02
3399 4968 0.614979 GGTAGGAGTCTGCCTGTCCA 60.615 60.000 0.00 0.00 41.76 4.02
3400 4969 1.267121 GTAGGAGTCTGCCTGTCCAA 58.733 55.000 0.00 0.00 39.08 3.53
3401 4970 1.066787 GTAGGAGTCTGCCTGTCCAAC 60.067 57.143 0.00 0.00 39.08 3.77
3402 4971 1.374758 GGAGTCTGCCTGTCCAACG 60.375 63.158 0.00 0.00 0.00 4.10
3403 4972 2.029844 GAGTCTGCCTGTCCAACGC 61.030 63.158 0.00 0.00 0.00 4.84
3404 4973 3.414700 GTCTGCCTGTCCAACGCG 61.415 66.667 3.53 3.53 0.00 6.01
3405 4974 4.680237 TCTGCCTGTCCAACGCGG 62.680 66.667 12.47 0.00 0.00 6.46
3420 4989 3.279875 CGGGGCGCCTATTTGAGC 61.280 66.667 28.56 6.44 0.00 4.26
3427 4996 2.584166 CGCCTATTTGAGCGCTAATG 57.416 50.000 11.50 2.86 46.50 1.90
3428 4997 2.135139 CGCCTATTTGAGCGCTAATGA 58.865 47.619 11.50 0.00 46.50 2.57
3429 4998 2.156504 CGCCTATTTGAGCGCTAATGAG 59.843 50.000 11.50 4.23 46.50 2.90
3430 4999 3.393800 GCCTATTTGAGCGCTAATGAGA 58.606 45.455 11.50 0.00 0.00 3.27
3431 5000 3.999663 GCCTATTTGAGCGCTAATGAGAT 59.000 43.478 11.50 1.51 0.00 2.75
3432 5001 4.453819 GCCTATTTGAGCGCTAATGAGATT 59.546 41.667 11.50 0.00 0.00 2.40
3433 5002 5.616424 GCCTATTTGAGCGCTAATGAGATTG 60.616 44.000 11.50 0.30 0.00 2.67
3434 5003 5.468072 CCTATTTGAGCGCTAATGAGATTGT 59.532 40.000 11.50 0.00 0.00 2.71
3435 5004 5.824904 ATTTGAGCGCTAATGAGATTGTT 57.175 34.783 11.50 0.00 0.00 2.83
3436 5005 5.627499 TTTGAGCGCTAATGAGATTGTTT 57.373 34.783 11.50 0.00 0.00 2.83
3437 5006 5.627499 TTGAGCGCTAATGAGATTGTTTT 57.373 34.783 11.50 0.00 0.00 2.43
3438 5007 5.627499 TGAGCGCTAATGAGATTGTTTTT 57.373 34.783 11.50 0.00 0.00 1.94
3439 5008 5.631026 TGAGCGCTAATGAGATTGTTTTTC 58.369 37.500 11.50 0.00 0.00 2.29
3440 5009 4.986622 AGCGCTAATGAGATTGTTTTTCC 58.013 39.130 8.99 0.00 0.00 3.13
3441 5010 4.105486 GCGCTAATGAGATTGTTTTTCCC 58.895 43.478 0.00 0.00 0.00 3.97
3442 5011 4.672409 CGCTAATGAGATTGTTTTTCCCC 58.328 43.478 0.00 0.00 0.00 4.81
3443 5012 4.672409 GCTAATGAGATTGTTTTTCCCCG 58.328 43.478 0.00 0.00 0.00 5.73
3444 5013 4.157840 GCTAATGAGATTGTTTTTCCCCGT 59.842 41.667 0.00 0.00 0.00 5.28
3445 5014 5.355910 GCTAATGAGATTGTTTTTCCCCGTA 59.644 40.000 0.00 0.00 0.00 4.02
3446 5015 6.127842 GCTAATGAGATTGTTTTTCCCCGTAA 60.128 38.462 0.00 0.00 0.00 3.18
3447 5016 6.658188 AATGAGATTGTTTTTCCCCGTAAA 57.342 33.333 0.00 0.00 0.00 2.01
3448 5017 6.658188 ATGAGATTGTTTTTCCCCGTAAAA 57.342 33.333 0.00 0.00 0.00 1.52
3449 5018 6.079424 TGAGATTGTTTTTCCCCGTAAAAG 57.921 37.500 0.00 0.00 30.47 2.27
3450 5019 5.828859 TGAGATTGTTTTTCCCCGTAAAAGA 59.171 36.000 0.00 0.00 30.47 2.52
3451 5020 6.492087 TGAGATTGTTTTTCCCCGTAAAAGAT 59.508 34.615 0.00 0.00 30.47 2.40
3452 5021 6.687604 AGATTGTTTTTCCCCGTAAAAGATG 58.312 36.000 0.00 0.00 30.47 2.90
3453 5022 4.857509 TGTTTTTCCCCGTAAAAGATGG 57.142 40.909 0.00 0.00 30.47 3.51
3454 5023 4.471548 TGTTTTTCCCCGTAAAAGATGGA 58.528 39.130 0.00 0.00 36.09 3.41
3455 5024 5.081032 TGTTTTTCCCCGTAAAAGATGGAT 58.919 37.500 0.00 0.00 36.09 3.41
3456 5025 6.246919 TGTTTTTCCCCGTAAAAGATGGATA 58.753 36.000 0.00 0.00 36.09 2.59
3457 5026 6.376018 TGTTTTTCCCCGTAAAAGATGGATAG 59.624 38.462 0.00 0.00 36.09 2.08
3458 5027 3.764237 TCCCCGTAAAAGATGGATAGC 57.236 47.619 0.00 0.00 36.09 2.97
3459 5028 3.042682 TCCCCGTAAAAGATGGATAGCA 58.957 45.455 0.00 0.00 36.09 3.49
3460 5029 3.139077 CCCCGTAAAAGATGGATAGCAC 58.861 50.000 0.00 0.00 36.09 4.40
3461 5030 3.181454 CCCCGTAAAAGATGGATAGCACT 60.181 47.826 0.00 0.00 36.09 4.40
3462 5031 4.058817 CCCGTAAAAGATGGATAGCACTC 58.941 47.826 0.00 0.00 36.09 3.51
3463 5032 3.736252 CCGTAAAAGATGGATAGCACTCG 59.264 47.826 0.00 0.00 36.09 4.18
3464 5033 4.499188 CCGTAAAAGATGGATAGCACTCGA 60.499 45.833 0.00 0.00 36.09 4.04
3465 5034 5.223382 CGTAAAAGATGGATAGCACTCGAT 58.777 41.667 0.00 0.00 0.00 3.59
3466 5035 6.379386 CGTAAAAGATGGATAGCACTCGATA 58.621 40.000 0.00 0.00 0.00 2.92
3467 5036 6.524933 CGTAAAAGATGGATAGCACTCGATAG 59.475 42.308 0.00 0.00 0.00 2.08
3481 5050 2.117137 TCGATAGAAAAAGCTAGCGCG 58.883 47.619 9.55 0.00 46.45 6.86
3482 5051 2.117137 CGATAGAAAAAGCTAGCGCGA 58.883 47.619 12.10 0.00 42.26 5.87
3483 5052 2.534349 CGATAGAAAAAGCTAGCGCGAA 59.466 45.455 12.10 0.00 42.26 4.70
3484 5053 3.000078 CGATAGAAAAAGCTAGCGCGAAA 60.000 43.478 12.10 0.00 42.26 3.46
3485 5054 2.882742 AGAAAAAGCTAGCGCGAAAG 57.117 45.000 12.10 7.10 42.32 2.62
3486 5055 2.413837 AGAAAAAGCTAGCGCGAAAGA 58.586 42.857 12.10 0.00 42.32 2.52
3487 5056 2.806244 AGAAAAAGCTAGCGCGAAAGAA 59.194 40.909 12.10 0.00 42.32 2.52
3488 5057 2.882742 AAAAGCTAGCGCGAAAGAAG 57.117 45.000 12.10 0.00 42.32 2.85
3489 5058 2.080286 AAAGCTAGCGCGAAAGAAGA 57.920 45.000 12.10 0.00 42.32 2.87
3490 5059 2.080286 AAGCTAGCGCGAAAGAAGAA 57.920 45.000 12.10 0.00 42.32 2.52
3491 5060 2.080286 AGCTAGCGCGAAAGAAGAAA 57.920 45.000 12.10 0.00 42.32 2.52
3492 5061 2.413837 AGCTAGCGCGAAAGAAGAAAA 58.586 42.857 12.10 0.00 42.32 2.29
3493 5062 2.413453 AGCTAGCGCGAAAGAAGAAAAG 59.587 45.455 12.10 0.00 42.32 2.27
3494 5063 2.474691 GCTAGCGCGAAAGAAGAAAAGG 60.475 50.000 12.10 0.00 0.00 3.11
3495 5064 0.238553 AGCGCGAAAGAAGAAAAGGC 59.761 50.000 12.10 0.00 0.00 4.35
3496 5065 0.729478 GCGCGAAAGAAGAAAAGGCC 60.729 55.000 12.10 0.00 0.00 5.19
3497 5066 0.591170 CGCGAAAGAAGAAAAGGCCA 59.409 50.000 5.01 0.00 0.00 5.36
3498 5067 1.400242 CGCGAAAGAAGAAAAGGCCAG 60.400 52.381 5.01 0.00 0.00 4.85
3499 5068 1.068264 GCGAAAGAAGAAAAGGCCAGG 60.068 52.381 5.01 0.00 0.00 4.45
3500 5069 1.068264 CGAAAGAAGAAAAGGCCAGGC 60.068 52.381 5.01 1.26 0.00 4.85
3501 5070 0.961753 AAAGAAGAAAAGGCCAGGCG 59.038 50.000 5.01 0.00 0.00 5.52
3502 5071 0.178990 AAGAAGAAAAGGCCAGGCGT 60.179 50.000 5.01 2.04 0.00 5.68
3503 5072 0.606673 AGAAGAAAAGGCCAGGCGTC 60.607 55.000 7.21 0.90 0.00 5.19
3504 5073 1.587043 GAAGAAAAGGCCAGGCGTCC 61.587 60.000 7.21 0.12 0.00 4.79
3505 5074 3.431725 GAAAAGGCCAGGCGTCCG 61.432 66.667 7.21 0.00 0.00 4.79
3506 5075 3.894547 GAAAAGGCCAGGCGTCCGA 62.895 63.158 7.21 0.00 0.00 4.55
3507 5076 3.268103 AAAAGGCCAGGCGTCCGAT 62.268 57.895 7.21 0.00 0.00 4.18
3508 5077 3.976701 AAAGGCCAGGCGTCCGATG 62.977 63.158 7.21 0.00 0.00 3.84
3517 5086 2.436646 CGTCCGATGCCTGGCTTT 60.437 61.111 21.03 7.36 0.00 3.51
3518 5087 2.753966 CGTCCGATGCCTGGCTTTG 61.754 63.158 21.03 16.85 0.00 2.77
3519 5088 2.751436 TCCGATGCCTGGCTTTGC 60.751 61.111 21.03 5.48 0.00 3.68
3520 5089 3.063704 CCGATGCCTGGCTTTGCA 61.064 61.111 21.03 0.00 42.52 4.08
3523 5092 3.203442 ATGCCTGGCTTTGCATCG 58.797 55.556 21.03 0.00 44.58 3.84
3524 5093 1.378911 ATGCCTGGCTTTGCATCGA 60.379 52.632 21.03 0.00 44.58 3.59
3525 5094 1.660560 ATGCCTGGCTTTGCATCGAC 61.661 55.000 21.03 0.00 44.58 4.20
3526 5095 2.787249 CCTGGCTTTGCATCGACG 59.213 61.111 0.00 0.00 0.00 5.12
3527 5096 2.099062 CTGGCTTTGCATCGACGC 59.901 61.111 0.00 0.00 0.00 5.19
3528 5097 2.358615 TGGCTTTGCATCGACGCT 60.359 55.556 4.63 0.00 0.00 5.07
3529 5098 1.079474 TGGCTTTGCATCGACGCTA 60.079 52.632 4.63 0.00 0.00 4.26
3530 5099 1.083806 TGGCTTTGCATCGACGCTAG 61.084 55.000 4.63 3.37 0.00 3.42
3531 5100 1.011794 GCTTTGCATCGACGCTAGC 60.012 57.895 13.55 13.55 34.69 3.42
3532 5101 1.638467 CTTTGCATCGACGCTAGCC 59.362 57.895 9.66 0.00 0.00 3.93
3533 5102 1.079474 TTTGCATCGACGCTAGCCA 60.079 52.632 9.66 0.00 0.00 4.75
3534 5103 1.083806 TTTGCATCGACGCTAGCCAG 61.084 55.000 9.66 0.00 0.00 4.85
3535 5104 1.944234 TTGCATCGACGCTAGCCAGA 61.944 55.000 9.66 6.52 0.00 3.86
3536 5105 1.226974 GCATCGACGCTAGCCAGAA 60.227 57.895 9.66 0.00 0.00 3.02
3537 5106 0.598680 GCATCGACGCTAGCCAGAAT 60.599 55.000 9.66 0.00 0.00 2.40
3538 5107 1.413382 CATCGACGCTAGCCAGAATC 58.587 55.000 9.66 0.00 0.00 2.52
3539 5108 0.315568 ATCGACGCTAGCCAGAATCC 59.684 55.000 9.66 0.00 0.00 3.01
3540 5109 1.300233 CGACGCTAGCCAGAATCCC 60.300 63.158 9.66 0.00 0.00 3.85
3541 5110 1.739338 CGACGCTAGCCAGAATCCCT 61.739 60.000 9.66 0.00 0.00 4.20
3542 5111 0.466124 GACGCTAGCCAGAATCCCTT 59.534 55.000 9.66 0.00 0.00 3.95
3543 5112 0.179000 ACGCTAGCCAGAATCCCTTG 59.821 55.000 9.66 0.00 0.00 3.61
3544 5113 0.465705 CGCTAGCCAGAATCCCTTGA 59.534 55.000 9.66 0.00 0.00 3.02
3545 5114 1.071385 CGCTAGCCAGAATCCCTTGAT 59.929 52.381 9.66 0.00 0.00 2.57
3546 5115 2.777094 GCTAGCCAGAATCCCTTGATC 58.223 52.381 2.29 0.00 0.00 2.92
3547 5116 2.869636 GCTAGCCAGAATCCCTTGATCG 60.870 54.545 2.29 0.00 0.00 3.69
3548 5117 1.500474 AGCCAGAATCCCTTGATCGA 58.500 50.000 0.00 0.00 0.00 3.59
3549 5118 1.839994 AGCCAGAATCCCTTGATCGAA 59.160 47.619 0.00 0.00 0.00 3.71
3550 5119 1.943340 GCCAGAATCCCTTGATCGAAC 59.057 52.381 0.00 0.00 0.00 3.95
3551 5120 2.205074 CCAGAATCCCTTGATCGAACG 58.795 52.381 0.00 0.00 0.00 3.95
3552 5121 2.205074 CAGAATCCCTTGATCGAACGG 58.795 52.381 0.00 0.00 0.00 4.44
3553 5122 1.139058 AGAATCCCTTGATCGAACGGG 59.861 52.381 1.35 1.35 38.07 5.28
3554 5123 4.445832 TCCCTTGATCGAACGGGA 57.554 55.556 5.96 5.96 43.24 5.14
3555 5124 2.910579 TCCCTTGATCGAACGGGAT 58.089 52.632 5.96 0.00 40.69 3.85
3556 5125 1.200519 TCCCTTGATCGAACGGGATT 58.799 50.000 5.96 0.00 40.69 3.01
3557 5126 1.138266 TCCCTTGATCGAACGGGATTC 59.862 52.381 5.96 0.00 40.69 2.52
3565 5134 3.390003 GAACGGGATTCGGCCATAA 57.610 52.632 2.24 0.00 44.45 1.90
3566 5135 0.942252 GAACGGGATTCGGCCATAAC 59.058 55.000 2.24 0.00 44.45 1.89
3567 5136 0.812412 AACGGGATTCGGCCATAACG 60.812 55.000 2.24 1.36 44.45 3.18
3568 5137 1.959226 CGGGATTCGGCCATAACGG 60.959 63.158 2.24 0.00 38.11 4.44
3578 5147 2.780595 CCATAACGGCCAGGAACAG 58.219 57.895 2.24 0.00 0.00 3.16
3579 5148 0.251916 CCATAACGGCCAGGAACAGA 59.748 55.000 2.24 0.00 0.00 3.41
3580 5149 1.339631 CCATAACGGCCAGGAACAGAA 60.340 52.381 2.24 0.00 0.00 3.02
3581 5150 2.009774 CATAACGGCCAGGAACAGAAG 58.990 52.381 2.24 0.00 0.00 2.85
3582 5151 0.321298 TAACGGCCAGGAACAGAAGC 60.321 55.000 2.24 0.00 0.00 3.86
3583 5152 2.747855 CGGCCAGGAACAGAAGCC 60.748 66.667 2.24 0.00 40.33 4.35
3584 5153 2.759795 GGCCAGGAACAGAAGCCT 59.240 61.111 0.00 0.00 40.57 4.58
3587 5156 3.993535 CAGGAACAGAAGCCTGGC 58.006 61.111 11.65 11.65 46.24 4.85
3588 5157 2.037136 CAGGAACAGAAGCCTGGCG 61.037 63.158 13.96 0.85 46.24 5.69
3589 5158 3.435186 GGAACAGAAGCCTGGCGC 61.435 66.667 13.96 9.78 44.60 6.53
3590 5159 3.435186 GAACAGAAGCCTGGCGCC 61.435 66.667 22.73 22.73 44.60 6.53
3591 5160 3.909086 GAACAGAAGCCTGGCGCCT 62.909 63.158 29.70 6.37 44.60 5.52
3592 5161 3.497884 AACAGAAGCCTGGCGCCTT 62.498 57.895 29.70 13.94 44.60 4.35
3593 5162 3.130160 CAGAAGCCTGGCGCCTTC 61.130 66.667 29.70 22.13 38.78 3.46
3594 5163 3.325753 AGAAGCCTGGCGCCTTCT 61.326 61.111 29.70 24.06 38.78 2.85
3595 5164 2.821810 GAAGCCTGGCGCCTTCTC 60.822 66.667 29.70 13.89 38.78 2.87
3596 5165 3.322318 GAAGCCTGGCGCCTTCTCT 62.322 63.158 29.70 16.01 38.78 3.10
3597 5166 1.961180 GAAGCCTGGCGCCTTCTCTA 61.961 60.000 29.70 4.55 38.78 2.43
3598 5167 1.553690 AAGCCTGGCGCCTTCTCTAA 61.554 55.000 29.70 3.67 38.78 2.10
3599 5168 1.522580 GCCTGGCGCCTTCTCTAAG 60.523 63.158 29.70 14.56 0.00 2.18
3600 5169 1.522580 CCTGGCGCCTTCTCTAAGC 60.523 63.158 29.70 0.00 0.00 3.09
3601 5170 1.219124 CTGGCGCCTTCTCTAAGCA 59.781 57.895 29.70 1.03 0.00 3.91
3602 5171 1.079127 TGGCGCCTTCTCTAAGCAC 60.079 57.895 29.70 0.00 0.00 4.40
3603 5172 1.219393 GGCGCCTTCTCTAAGCACT 59.781 57.895 22.15 0.00 0.00 4.40
3604 5173 1.086634 GGCGCCTTCTCTAAGCACTG 61.087 60.000 22.15 0.00 0.00 3.66
3605 5174 1.086634 GCGCCTTCTCTAAGCACTGG 61.087 60.000 0.00 0.00 0.00 4.00
3606 5175 1.086634 CGCCTTCTCTAAGCACTGGC 61.087 60.000 0.00 0.00 41.61 4.85
3617 5186 1.425428 GCACTGGCGTTGTAGATGC 59.575 57.895 0.00 0.00 39.65 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.660180 GATCTAAAGAACCTGACACTAAATCTT 57.340 33.333 0.00 0.00 0.00 2.40
75 1569 0.770499 TGGAGCCACAATCTTCACCA 59.230 50.000 0.00 0.00 0.00 4.17
98 1592 1.471684 ACGTGTCCCTAAGAACTAGCG 59.528 52.381 0.00 0.00 0.00 4.26
102 1597 1.045407 TGCACGTGTCCCTAAGAACT 58.955 50.000 18.38 0.00 0.00 3.01
122 1617 4.944048 TCAATGACAGTCGAAAGTCTTCA 58.056 39.130 16.54 2.42 35.81 3.02
145 1640 0.895530 CCAGAGCCGACCTGAACTTA 59.104 55.000 0.00 0.00 33.65 2.24
157 1652 1.227674 CCGCTTCCATACCAGAGCC 60.228 63.158 0.00 0.00 0.00 4.70
159 1654 1.592669 CGCCGCTTCCATACCAGAG 60.593 63.158 0.00 0.00 0.00 3.35
162 1657 2.173758 TTGTCGCCGCTTCCATACCA 62.174 55.000 0.00 0.00 0.00 3.25
164 1659 1.017177 TGTTGTCGCCGCTTCCATAC 61.017 55.000 0.00 0.00 0.00 2.39
166 1661 2.031919 TGTTGTCGCCGCTTCCAT 59.968 55.556 0.00 0.00 0.00 3.41
167 1662 2.664851 CTGTTGTCGCCGCTTCCA 60.665 61.111 0.00 0.00 0.00 3.53
168 1663 4.090057 GCTGTTGTCGCCGCTTCC 62.090 66.667 0.00 0.00 0.00 3.46
181 1681 3.121030 GAGCCAACGATGCGCTGT 61.121 61.111 9.73 1.10 34.52 4.40
211 1711 4.080807 TCTGAACCACTGAACAACCACTTA 60.081 41.667 0.00 0.00 0.00 2.24
212 1712 3.016736 CTGAACCACTGAACAACCACTT 58.983 45.455 0.00 0.00 0.00 3.16
214 1714 2.614057 CTCTGAACCACTGAACAACCAC 59.386 50.000 0.00 0.00 0.00 4.16
234 1734 8.411683 AGTATAATGAAAATTACGTCGAGGTCT 58.588 33.333 15.00 0.54 0.00 3.85
240 1740 8.814235 ACCTCAAGTATAATGAAAATTACGTCG 58.186 33.333 0.00 0.00 0.00 5.12
263 1763 8.747538 AAGTTCATCAAAACTACAAAGTACCT 57.252 30.769 0.00 0.00 38.52 3.08
314 1814 4.451557 CGTCGAATGCGTTTTCTTTAGTT 58.548 39.130 0.00 0.00 38.98 2.24
315 1815 3.120786 CCGTCGAATGCGTTTTCTTTAGT 60.121 43.478 0.00 0.00 38.98 2.24
316 1816 3.120786 ACCGTCGAATGCGTTTTCTTTAG 60.121 43.478 0.00 0.00 38.98 1.85
332 1832 3.850273 GGATATATACTCGCAAACCGTCG 59.150 47.826 0.00 0.00 38.35 5.12
394 1894 8.119845 GTGAAACAATTGCGGTTTTCTAATTTT 58.880 29.630 15.96 2.41 38.50 1.82
422 1923 2.606108 GATCACGTTGGAAATTTGCCC 58.394 47.619 7.27 0.00 0.00 5.36
432 1933 1.234615 AACCGCTTGGATCACGTTGG 61.235 55.000 0.00 0.00 36.26 3.77
469 1970 3.057174 AGAAGATACGCTCGGAATCATCC 60.057 47.826 8.74 0.00 42.80 3.51
1353 2915 3.917760 GCTACGCCCTGGATCGCT 61.918 66.667 0.00 0.00 0.00 4.93
1586 3148 2.425592 CGTGGGTCTTGAGCCACA 59.574 61.111 35.58 12.31 31.25 4.17
1845 3407 1.064832 GGGAAGAAGAGCTGCCAGAAT 60.065 52.381 0.00 0.00 45.26 2.40
2706 4268 9.944663 TTGTTTGCTTATTAGTTTTGTCAGTAG 57.055 29.630 0.00 0.00 0.00 2.57
2716 4278 6.923508 GGCACTTTCTTGTTTGCTTATTAGTT 59.076 34.615 0.00 0.00 35.24 2.24
2910 4479 0.958091 TGGGGAAATTCACGCACAAG 59.042 50.000 0.00 0.00 0.00 3.16
2975 4544 3.081061 ACATTATGCGCTTTGGTTCTGA 58.919 40.909 9.73 0.00 0.00 3.27
2980 4549 2.415357 CCGAAACATTATGCGCTTTGGT 60.415 45.455 9.73 0.00 0.00 3.67
2999 4568 3.248266 CTTCGTTAAGTCCAAGGTACCG 58.752 50.000 6.18 0.00 0.00 4.02
3056 4625 9.762933 AACTATTGTTCTACGGTTTTACAGTAA 57.237 29.630 0.00 0.00 28.92 2.24
3191 4760 3.010584 AGGTCGGTAGTTAGGTAGGACAA 59.989 47.826 0.00 0.00 0.00 3.18
3195 4764 4.708909 AGAAAAGGTCGGTAGTTAGGTAGG 59.291 45.833 0.00 0.00 0.00 3.18
3208 4777 3.434637 CACACCAAAACAGAAAAGGTCG 58.565 45.455 0.00 0.00 0.00 4.79
3211 4780 3.525268 AGCACACCAAAACAGAAAAGG 57.475 42.857 0.00 0.00 0.00 3.11
3255 4824 6.377146 TGAAAGCATTATTTACAGGAAGGACC 59.623 38.462 0.00 0.00 39.35 4.46
3256 4825 7.391148 TGAAAGCATTATTTACAGGAAGGAC 57.609 36.000 0.00 0.00 0.00 3.85
3278 4847 1.536940 CACCACACATTCATGGCTGA 58.463 50.000 0.00 0.00 39.84 4.26
3306 4875 6.441093 TCTTTGCATTGTAGATGCCTTTAG 57.559 37.500 8.36 1.86 43.94 1.85
3308 4877 5.657474 CATCTTTGCATTGTAGATGCCTTT 58.343 37.500 12.65 0.00 43.94 3.11
3324 4893 2.159198 AGCGCCCAAATAAGCATCTTTG 60.159 45.455 2.29 0.00 33.20 2.77
3325 4894 2.102578 AGCGCCCAAATAAGCATCTTT 58.897 42.857 2.29 0.00 0.00 2.52
3326 4895 1.767759 AGCGCCCAAATAAGCATCTT 58.232 45.000 2.29 0.00 0.00 2.40
3327 4896 1.767759 AAGCGCCCAAATAAGCATCT 58.232 45.000 2.29 0.00 0.00 2.90
3328 4897 2.878406 TCTAAGCGCCCAAATAAGCATC 59.122 45.455 2.29 0.00 0.00 3.91
3329 4898 2.618709 GTCTAAGCGCCCAAATAAGCAT 59.381 45.455 2.29 0.00 0.00 3.79
3330 4899 2.014128 GTCTAAGCGCCCAAATAAGCA 58.986 47.619 2.29 0.00 0.00 3.91
3331 4900 2.014128 TGTCTAAGCGCCCAAATAAGC 58.986 47.619 2.29 0.00 0.00 3.09
3332 4901 4.900635 ATTGTCTAAGCGCCCAAATAAG 57.099 40.909 2.29 0.00 0.00 1.73
3333 4902 6.761099 TTTATTGTCTAAGCGCCCAAATAA 57.239 33.333 2.29 4.14 0.00 1.40
3334 4903 6.761099 TTTTATTGTCTAAGCGCCCAAATA 57.239 33.333 2.29 0.00 0.00 1.40
3335 4904 5.652994 TTTTATTGTCTAAGCGCCCAAAT 57.347 34.783 2.29 0.00 0.00 2.32
3336 4905 5.455056 TTTTTATTGTCTAAGCGCCCAAA 57.545 34.783 2.29 0.00 0.00 3.28
3362 4931 9.280456 ACTCCTACCCTGATCTTATTTTCTTAA 57.720 33.333 0.00 0.00 0.00 1.85
3363 4932 8.855804 ACTCCTACCCTGATCTTATTTTCTTA 57.144 34.615 0.00 0.00 0.00 2.10
3364 4933 7.625682 AGACTCCTACCCTGATCTTATTTTCTT 59.374 37.037 0.00 0.00 0.00 2.52
3365 4934 7.070571 CAGACTCCTACCCTGATCTTATTTTCT 59.929 40.741 0.00 0.00 0.00 2.52
3366 4935 7.213678 CAGACTCCTACCCTGATCTTATTTTC 58.786 42.308 0.00 0.00 0.00 2.29
3367 4936 6.408662 GCAGACTCCTACCCTGATCTTATTTT 60.409 42.308 0.00 0.00 0.00 1.82
3368 4937 5.071115 GCAGACTCCTACCCTGATCTTATTT 59.929 44.000 0.00 0.00 0.00 1.40
3369 4938 4.591072 GCAGACTCCTACCCTGATCTTATT 59.409 45.833 0.00 0.00 0.00 1.40
3370 4939 4.156477 GCAGACTCCTACCCTGATCTTAT 58.844 47.826 0.00 0.00 0.00 1.73
3371 4940 3.567397 GCAGACTCCTACCCTGATCTTA 58.433 50.000 0.00 0.00 0.00 2.10
3372 4941 2.393646 GCAGACTCCTACCCTGATCTT 58.606 52.381 0.00 0.00 0.00 2.40
3373 4942 1.412361 GGCAGACTCCTACCCTGATCT 60.412 57.143 0.00 0.00 0.00 2.75
3374 4943 1.044611 GGCAGACTCCTACCCTGATC 58.955 60.000 0.00 0.00 0.00 2.92
3375 4944 0.639392 AGGCAGACTCCTACCCTGAT 59.361 55.000 0.00 0.00 33.95 2.90
3376 4945 0.324738 CAGGCAGACTCCTACCCTGA 60.325 60.000 0.00 0.00 40.63 3.86
3377 4946 0.616111 ACAGGCAGACTCCTACCCTG 60.616 60.000 3.60 3.60 42.33 4.45
3378 4947 0.324830 GACAGGCAGACTCCTACCCT 60.325 60.000 0.00 0.00 33.95 4.34
3379 4948 1.331399 GGACAGGCAGACTCCTACCC 61.331 65.000 0.00 0.00 33.95 3.69
3380 4949 0.614979 TGGACAGGCAGACTCCTACC 60.615 60.000 0.00 0.00 33.95 3.18
3381 4950 1.066787 GTTGGACAGGCAGACTCCTAC 60.067 57.143 0.00 0.00 33.95 3.18
3382 4951 1.267121 GTTGGACAGGCAGACTCCTA 58.733 55.000 0.00 0.00 33.95 2.94
3383 4952 1.821061 CGTTGGACAGGCAGACTCCT 61.821 60.000 0.00 0.00 36.78 3.69
3384 4953 1.374758 CGTTGGACAGGCAGACTCC 60.375 63.158 0.00 0.00 0.00 3.85
3385 4954 2.029844 GCGTTGGACAGGCAGACTC 61.030 63.158 0.00 0.00 36.21 3.36
3386 4955 2.031163 GCGTTGGACAGGCAGACT 59.969 61.111 0.00 0.00 36.21 3.24
3387 4956 3.414700 CGCGTTGGACAGGCAGAC 61.415 66.667 0.00 0.00 35.91 3.51
3388 4957 4.680237 CCGCGTTGGACAGGCAGA 62.680 66.667 4.92 0.00 42.00 4.26
3403 4972 3.279875 GCTCAAATAGGCGCCCCG 61.280 66.667 26.15 7.38 35.76 5.73
3404 4973 3.279875 CGCTCAAATAGGCGCCCC 61.280 66.667 26.15 0.00 44.64 5.80
3409 4978 3.393800 TCTCATTAGCGCTCAAATAGGC 58.606 45.455 16.34 0.00 0.00 3.93
3410 4979 5.468072 ACAATCTCATTAGCGCTCAAATAGG 59.532 40.000 16.34 5.63 0.00 2.57
3411 4980 6.536731 ACAATCTCATTAGCGCTCAAATAG 57.463 37.500 16.34 6.79 0.00 1.73
3412 4981 6.925610 AACAATCTCATTAGCGCTCAAATA 57.074 33.333 16.34 0.00 0.00 1.40
3413 4982 5.824904 AACAATCTCATTAGCGCTCAAAT 57.175 34.783 16.34 6.34 0.00 2.32
3414 4983 5.627499 AAACAATCTCATTAGCGCTCAAA 57.373 34.783 16.34 3.38 0.00 2.69
3415 4984 5.627499 AAAACAATCTCATTAGCGCTCAA 57.373 34.783 16.34 7.54 0.00 3.02
3416 4985 5.391950 GGAAAAACAATCTCATTAGCGCTCA 60.392 40.000 16.34 2.02 0.00 4.26
3417 4986 5.030936 GGAAAAACAATCTCATTAGCGCTC 58.969 41.667 16.34 0.00 0.00 5.03
3418 4987 4.142381 GGGAAAAACAATCTCATTAGCGCT 60.142 41.667 17.26 17.26 0.00 5.92
3419 4988 4.105486 GGGAAAAACAATCTCATTAGCGC 58.895 43.478 0.00 0.00 0.00 5.92
3420 4989 4.672409 GGGGAAAAACAATCTCATTAGCG 58.328 43.478 0.00 0.00 0.00 4.26
3421 4990 4.157840 ACGGGGAAAAACAATCTCATTAGC 59.842 41.667 0.00 0.00 0.00 3.09
3422 4991 5.897377 ACGGGGAAAAACAATCTCATTAG 57.103 39.130 0.00 0.00 0.00 1.73
3423 4992 7.762588 TTTACGGGGAAAAACAATCTCATTA 57.237 32.000 0.00 0.00 0.00 1.90
3424 4993 6.658188 TTTACGGGGAAAAACAATCTCATT 57.342 33.333 0.00 0.00 0.00 2.57
3425 4994 6.492087 TCTTTTACGGGGAAAAACAATCTCAT 59.508 34.615 0.00 0.00 0.00 2.90
3426 4995 5.828859 TCTTTTACGGGGAAAAACAATCTCA 59.171 36.000 0.00 0.00 0.00 3.27
3427 4996 6.321848 TCTTTTACGGGGAAAAACAATCTC 57.678 37.500 0.00 0.00 0.00 2.75
3428 4997 6.295067 CCATCTTTTACGGGGAAAAACAATCT 60.295 38.462 0.00 0.00 0.00 2.40
3429 4998 5.867174 CCATCTTTTACGGGGAAAAACAATC 59.133 40.000 0.00 0.00 0.00 2.67
3430 4999 5.540719 TCCATCTTTTACGGGGAAAAACAAT 59.459 36.000 0.00 0.00 0.00 2.71
3431 5000 4.894114 TCCATCTTTTACGGGGAAAAACAA 59.106 37.500 0.00 0.00 0.00 2.83
3432 5001 4.471548 TCCATCTTTTACGGGGAAAAACA 58.528 39.130 0.00 0.00 0.00 2.83
3433 5002 5.654603 ATCCATCTTTTACGGGGAAAAAC 57.345 39.130 0.00 0.00 0.00 2.43
3434 5003 5.358725 GCTATCCATCTTTTACGGGGAAAAA 59.641 40.000 0.00 0.00 0.00 1.94
3435 5004 4.885325 GCTATCCATCTTTTACGGGGAAAA 59.115 41.667 0.00 0.00 0.00 2.29
3436 5005 4.080243 TGCTATCCATCTTTTACGGGGAAA 60.080 41.667 0.00 0.00 0.00 3.13
3437 5006 3.456644 TGCTATCCATCTTTTACGGGGAA 59.543 43.478 0.00 0.00 0.00 3.97
3438 5007 3.042682 TGCTATCCATCTTTTACGGGGA 58.957 45.455 0.00 0.00 0.00 4.81
3439 5008 3.139077 GTGCTATCCATCTTTTACGGGG 58.861 50.000 0.00 0.00 0.00 5.73
3440 5009 4.058817 GAGTGCTATCCATCTTTTACGGG 58.941 47.826 0.00 0.00 0.00 5.28
3441 5010 3.736252 CGAGTGCTATCCATCTTTTACGG 59.264 47.826 0.00 0.00 0.00 4.02
3442 5011 4.607955 TCGAGTGCTATCCATCTTTTACG 58.392 43.478 0.00 0.00 0.00 3.18
3443 5012 7.594714 TCTATCGAGTGCTATCCATCTTTTAC 58.405 38.462 0.00 0.00 0.00 2.01
3444 5013 7.761038 TCTATCGAGTGCTATCCATCTTTTA 57.239 36.000 0.00 0.00 0.00 1.52
3445 5014 6.656632 TCTATCGAGTGCTATCCATCTTTT 57.343 37.500 0.00 0.00 0.00 2.27
3446 5015 6.656632 TTCTATCGAGTGCTATCCATCTTT 57.343 37.500 0.00 0.00 0.00 2.52
3447 5016 6.656632 TTTCTATCGAGTGCTATCCATCTT 57.343 37.500 0.00 0.00 0.00 2.40
3448 5017 6.656632 TTTTCTATCGAGTGCTATCCATCT 57.343 37.500 0.00 0.00 0.00 2.90
3449 5018 6.128688 GCTTTTTCTATCGAGTGCTATCCATC 60.129 42.308 0.00 0.00 0.00 3.51
3450 5019 5.698545 GCTTTTTCTATCGAGTGCTATCCAT 59.301 40.000 0.00 0.00 0.00 3.41
3451 5020 5.050490 GCTTTTTCTATCGAGTGCTATCCA 58.950 41.667 0.00 0.00 0.00 3.41
3452 5021 5.293560 AGCTTTTTCTATCGAGTGCTATCC 58.706 41.667 0.00 0.00 0.00 2.59
3453 5022 6.088883 GCTAGCTTTTTCTATCGAGTGCTATC 59.911 42.308 7.70 0.00 32.46 2.08
3454 5023 5.923684 GCTAGCTTTTTCTATCGAGTGCTAT 59.076 40.000 7.70 0.00 32.46 2.97
3455 5024 5.282510 GCTAGCTTTTTCTATCGAGTGCTA 58.717 41.667 7.70 0.00 0.00 3.49
3456 5025 4.116238 GCTAGCTTTTTCTATCGAGTGCT 58.884 43.478 7.70 0.00 0.00 4.40
3457 5026 3.060873 CGCTAGCTTTTTCTATCGAGTGC 60.061 47.826 13.93 0.00 31.93 4.40
3458 5027 3.060873 GCGCTAGCTTTTTCTATCGAGTG 60.061 47.826 13.93 0.00 41.01 3.51
3459 5028 3.117046 GCGCTAGCTTTTTCTATCGAGT 58.883 45.455 13.93 0.00 41.01 4.18
3460 5029 2.152112 CGCGCTAGCTTTTTCTATCGAG 59.848 50.000 13.93 0.00 42.32 4.04
3461 5030 2.117137 CGCGCTAGCTTTTTCTATCGA 58.883 47.619 13.93 0.00 42.32 3.59
3462 5031 2.117137 TCGCGCTAGCTTTTTCTATCG 58.883 47.619 13.93 2.61 42.32 2.92
3463 5032 4.267928 TCTTTCGCGCTAGCTTTTTCTATC 59.732 41.667 13.93 0.00 42.32 2.08
3464 5033 4.181578 TCTTTCGCGCTAGCTTTTTCTAT 58.818 39.130 13.93 0.00 42.32 1.98
3465 5034 3.581755 TCTTTCGCGCTAGCTTTTTCTA 58.418 40.909 13.93 0.00 42.32 2.10
3466 5035 2.413837 TCTTTCGCGCTAGCTTTTTCT 58.586 42.857 13.93 0.00 42.32 2.52
3467 5036 2.875080 TCTTTCGCGCTAGCTTTTTC 57.125 45.000 13.93 0.00 42.32 2.29
3468 5037 2.806244 TCTTCTTTCGCGCTAGCTTTTT 59.194 40.909 13.93 0.00 42.32 1.94
3469 5038 2.413837 TCTTCTTTCGCGCTAGCTTTT 58.586 42.857 13.93 0.00 42.32 2.27
3470 5039 2.080286 TCTTCTTTCGCGCTAGCTTT 57.920 45.000 13.93 0.00 42.32 3.51
3471 5040 2.080286 TTCTTCTTTCGCGCTAGCTT 57.920 45.000 13.93 0.00 42.32 3.74
3472 5041 2.080286 TTTCTTCTTTCGCGCTAGCT 57.920 45.000 13.93 0.00 42.32 3.32
3473 5042 2.474691 CCTTTTCTTCTTTCGCGCTAGC 60.475 50.000 5.56 4.06 40.74 3.42
3474 5043 2.474691 GCCTTTTCTTCTTTCGCGCTAG 60.475 50.000 5.56 0.22 0.00 3.42
3475 5044 1.463444 GCCTTTTCTTCTTTCGCGCTA 59.537 47.619 5.56 0.00 0.00 4.26
3476 5045 0.238553 GCCTTTTCTTCTTTCGCGCT 59.761 50.000 5.56 0.00 0.00 5.92
3477 5046 0.729478 GGCCTTTTCTTCTTTCGCGC 60.729 55.000 0.00 0.00 0.00 6.86
3478 5047 0.591170 TGGCCTTTTCTTCTTTCGCG 59.409 50.000 3.32 0.00 0.00 5.87
3479 5048 1.068264 CCTGGCCTTTTCTTCTTTCGC 60.068 52.381 3.32 0.00 0.00 4.70
3480 5049 1.068264 GCCTGGCCTTTTCTTCTTTCG 60.068 52.381 7.66 0.00 0.00 3.46
3481 5050 1.068264 CGCCTGGCCTTTTCTTCTTTC 60.068 52.381 14.12 0.00 0.00 2.62
3482 5051 0.961753 CGCCTGGCCTTTTCTTCTTT 59.038 50.000 14.12 0.00 0.00 2.52
3483 5052 0.178990 ACGCCTGGCCTTTTCTTCTT 60.179 50.000 14.12 0.00 0.00 2.52
3484 5053 0.606673 GACGCCTGGCCTTTTCTTCT 60.607 55.000 14.12 0.00 0.00 2.85
3485 5054 1.587043 GGACGCCTGGCCTTTTCTTC 61.587 60.000 14.12 0.00 0.00 2.87
3486 5055 1.603739 GGACGCCTGGCCTTTTCTT 60.604 57.895 14.12 0.00 0.00 2.52
3487 5056 2.034221 GGACGCCTGGCCTTTTCT 59.966 61.111 14.12 0.00 0.00 2.52
3488 5057 3.431725 CGGACGCCTGGCCTTTTC 61.432 66.667 14.12 4.45 0.00 2.29
3489 5058 3.268103 ATCGGACGCCTGGCCTTTT 62.268 57.895 14.12 0.00 0.00 2.27
3490 5059 3.717294 ATCGGACGCCTGGCCTTT 61.717 61.111 14.12 0.00 0.00 3.11
3491 5060 4.473520 CATCGGACGCCTGGCCTT 62.474 66.667 14.12 0.00 0.00 4.35
3500 5069 2.436646 AAAGCCAGGCATCGGACG 60.437 61.111 15.80 0.00 0.00 4.79
3501 5070 3.056313 GCAAAGCCAGGCATCGGAC 62.056 63.158 15.80 0.00 0.00 4.79
3502 5071 2.751436 GCAAAGCCAGGCATCGGA 60.751 61.111 15.80 0.00 0.00 4.55
3503 5072 3.063704 TGCAAAGCCAGGCATCGG 61.064 61.111 15.80 0.71 34.58 4.18
3507 5076 2.033911 TCGATGCAAAGCCAGGCA 59.966 55.556 15.80 0.00 45.23 4.75
3508 5077 2.486966 GTCGATGCAAAGCCAGGC 59.513 61.111 1.84 1.84 0.00 4.85
3509 5078 2.787249 CGTCGATGCAAAGCCAGG 59.213 61.111 0.00 0.00 0.00 4.45
3510 5079 1.083806 TAGCGTCGATGCAAAGCCAG 61.084 55.000 30.02 0.00 37.31 4.85
3511 5080 1.079474 TAGCGTCGATGCAAAGCCA 60.079 52.632 30.02 6.22 37.31 4.75
3512 5081 1.638467 CTAGCGTCGATGCAAAGCC 59.362 57.895 30.02 0.84 37.31 4.35
3513 5082 1.011794 GCTAGCGTCGATGCAAAGC 60.012 57.895 29.41 29.41 38.42 3.51
3514 5083 1.083806 TGGCTAGCGTCGATGCAAAG 61.084 55.000 30.02 25.14 37.31 2.77
3515 5084 1.079474 TGGCTAGCGTCGATGCAAA 60.079 52.632 30.02 17.02 37.31 3.68
3516 5085 1.519234 CTGGCTAGCGTCGATGCAA 60.519 57.895 30.02 10.03 37.31 4.08
3517 5086 1.944234 TTCTGGCTAGCGTCGATGCA 61.944 55.000 30.02 15.49 37.31 3.96
3518 5087 0.598680 ATTCTGGCTAGCGTCGATGC 60.599 55.000 22.11 22.11 0.00 3.91
3519 5088 1.413382 GATTCTGGCTAGCGTCGATG 58.587 55.000 9.00 0.00 0.00 3.84
3520 5089 0.315568 GGATTCTGGCTAGCGTCGAT 59.684 55.000 9.00 0.14 0.00 3.59
3521 5090 1.734137 GGATTCTGGCTAGCGTCGA 59.266 57.895 9.00 1.74 0.00 4.20
3522 5091 1.300233 GGGATTCTGGCTAGCGTCG 60.300 63.158 9.00 0.00 0.00 5.12
3523 5092 0.466124 AAGGGATTCTGGCTAGCGTC 59.534 55.000 9.00 0.00 0.00 5.19
3524 5093 0.179000 CAAGGGATTCTGGCTAGCGT 59.821 55.000 9.00 0.00 0.00 5.07
3525 5094 0.465705 TCAAGGGATTCTGGCTAGCG 59.534 55.000 9.00 0.00 0.00 4.26
3526 5095 2.777094 GATCAAGGGATTCTGGCTAGC 58.223 52.381 6.04 6.04 32.67 3.42
3527 5096 2.630098 TCGATCAAGGGATTCTGGCTAG 59.370 50.000 0.00 0.00 32.67 3.42
3528 5097 2.677914 TCGATCAAGGGATTCTGGCTA 58.322 47.619 0.00 0.00 32.67 3.93
3529 5098 1.500474 TCGATCAAGGGATTCTGGCT 58.500 50.000 0.00 0.00 32.67 4.75
3530 5099 1.943340 GTTCGATCAAGGGATTCTGGC 59.057 52.381 0.00 0.00 32.67 4.85
3531 5100 2.205074 CGTTCGATCAAGGGATTCTGG 58.795 52.381 0.00 0.00 32.67 3.86
3532 5101 2.205074 CCGTTCGATCAAGGGATTCTG 58.795 52.381 9.62 0.00 41.94 3.02
3533 5102 1.139058 CCCGTTCGATCAAGGGATTCT 59.861 52.381 14.38 0.00 46.64 2.40
3534 5103 1.583054 CCCGTTCGATCAAGGGATTC 58.417 55.000 14.38 0.00 46.64 2.52
3535 5104 3.780624 CCCGTTCGATCAAGGGATT 57.219 52.632 14.38 0.00 46.64 3.01
3538 5107 1.583054 GAATCCCGTTCGATCAAGGG 58.417 55.000 1.94 1.94 45.10 3.95
3547 5116 0.942252 GTTATGGCCGAATCCCGTTC 59.058 55.000 0.00 0.00 36.31 3.95
3548 5117 0.812412 CGTTATGGCCGAATCCCGTT 60.812 55.000 0.00 0.00 36.31 4.44
3549 5118 1.227438 CGTTATGGCCGAATCCCGT 60.227 57.895 0.00 0.00 36.31 5.28
3550 5119 1.959226 CCGTTATGGCCGAATCCCG 60.959 63.158 0.00 0.00 38.18 5.14
3551 5120 4.058797 CCGTTATGGCCGAATCCC 57.941 61.111 0.00 0.00 0.00 3.85
3560 5129 0.251916 TCTGTTCCTGGCCGTTATGG 59.748 55.000 0.00 0.00 42.50 2.74
3561 5130 2.009774 CTTCTGTTCCTGGCCGTTATG 58.990 52.381 0.00 0.00 0.00 1.90
3562 5131 1.679032 GCTTCTGTTCCTGGCCGTTAT 60.679 52.381 0.00 0.00 0.00 1.89
3563 5132 0.321298 GCTTCTGTTCCTGGCCGTTA 60.321 55.000 0.00 0.00 0.00 3.18
3564 5133 1.600916 GCTTCTGTTCCTGGCCGTT 60.601 57.895 0.00 0.00 0.00 4.44
3565 5134 2.032681 GCTTCTGTTCCTGGCCGT 59.967 61.111 0.00 0.00 0.00 5.68
3566 5135 2.747855 GGCTTCTGTTCCTGGCCG 60.748 66.667 0.00 0.00 33.30 6.13
3567 5136 1.676967 CAGGCTTCTGTTCCTGGCC 60.677 63.158 0.00 0.00 44.64 5.36
3568 5137 3.993535 CAGGCTTCTGTTCCTGGC 58.006 61.111 0.51 0.00 44.64 4.85
3571 5140 2.348998 CGCCAGGCTTCTGTTCCT 59.651 61.111 10.54 0.00 36.81 3.36
3572 5141 3.435186 GCGCCAGGCTTCTGTTCC 61.435 66.667 10.54 0.00 39.11 3.62
3573 5142 3.435186 GGCGCCAGGCTTCTGTTC 61.435 66.667 24.80 0.00 42.94 3.18
3581 5150 1.522580 CTTAGAGAAGGCGCCAGGC 60.523 63.158 31.54 17.25 44.19 4.85
3582 5151 1.522580 GCTTAGAGAAGGCGCCAGG 60.523 63.158 31.54 8.23 32.84 4.45
3583 5152 1.086634 GTGCTTAGAGAAGGCGCCAG 61.087 60.000 31.54 16.57 32.84 4.85
3584 5153 1.079127 GTGCTTAGAGAAGGCGCCA 60.079 57.895 31.54 2.66 32.84 5.69
3585 5154 1.086634 CAGTGCTTAGAGAAGGCGCC 61.087 60.000 21.89 21.89 32.84 6.53
3586 5155 1.086634 CCAGTGCTTAGAGAAGGCGC 61.087 60.000 0.00 0.00 32.84 6.53
3587 5156 1.086634 GCCAGTGCTTAGAGAAGGCG 61.087 60.000 0.00 0.00 32.84 5.52
3588 5157 1.086634 CGCCAGTGCTTAGAGAAGGC 61.087 60.000 0.00 0.00 37.32 4.35
3589 5158 0.247736 ACGCCAGTGCTTAGAGAAGG 59.752 55.000 0.00 0.00 32.84 3.46
3590 5159 1.728971 CAACGCCAGTGCTTAGAGAAG 59.271 52.381 0.00 0.00 35.60 2.85
3591 5160 1.070134 ACAACGCCAGTGCTTAGAGAA 59.930 47.619 0.00 0.00 34.43 2.87
3592 5161 0.679505 ACAACGCCAGTGCTTAGAGA 59.320 50.000 0.00 0.00 34.43 3.10
3593 5162 2.094700 TCTACAACGCCAGTGCTTAGAG 60.095 50.000 0.00 0.00 34.43 2.43
3594 5163 1.890489 TCTACAACGCCAGTGCTTAGA 59.110 47.619 0.00 0.00 34.43 2.10
3595 5164 2.363788 TCTACAACGCCAGTGCTTAG 57.636 50.000 0.00 0.00 34.43 2.18
3596 5165 2.616960 CATCTACAACGCCAGTGCTTA 58.383 47.619 0.00 0.00 34.43 3.09
3597 5166 1.442769 CATCTACAACGCCAGTGCTT 58.557 50.000 0.00 0.00 34.43 3.91
3598 5167 1.021390 GCATCTACAACGCCAGTGCT 61.021 55.000 0.00 0.00 34.43 4.40
3599 5168 1.425428 GCATCTACAACGCCAGTGC 59.575 57.895 0.00 0.00 0.00 4.40
3600 5169 2.089854 GGCATCTACAACGCCAGTG 58.910 57.895 0.00 0.00 45.52 3.66
3601 5170 4.617875 GGCATCTACAACGCCAGT 57.382 55.556 0.00 0.00 45.52 4.00
3604 5173 1.940613 CTTTAGGGCATCTACAACGCC 59.059 52.381 0.00 0.00 45.47 5.68
3605 5174 2.901249 TCTTTAGGGCATCTACAACGC 58.099 47.619 0.00 0.00 0.00 4.84
3606 5175 4.950050 AGATCTTTAGGGCATCTACAACG 58.050 43.478 0.00 0.00 0.00 4.10
3607 5176 5.008118 GCAAGATCTTTAGGGCATCTACAAC 59.992 44.000 4.86 0.00 0.00 3.32
3608 5177 5.126067 GCAAGATCTTTAGGGCATCTACAA 58.874 41.667 4.86 0.00 0.00 2.41
3609 5178 4.444876 GGCAAGATCTTTAGGGCATCTACA 60.445 45.833 15.13 0.00 0.00 2.74
3610 5179 4.068599 GGCAAGATCTTTAGGGCATCTAC 58.931 47.826 15.13 0.00 0.00 2.59
3611 5180 3.244215 CGGCAAGATCTTTAGGGCATCTA 60.244 47.826 15.13 0.00 0.00 1.98
3612 5181 2.486191 CGGCAAGATCTTTAGGGCATCT 60.486 50.000 15.13 0.00 0.00 2.90
3613 5182 1.876156 CGGCAAGATCTTTAGGGCATC 59.124 52.381 15.13 1.32 0.00 3.91
3614 5183 1.212935 ACGGCAAGATCTTTAGGGCAT 59.787 47.619 15.13 0.04 0.00 4.40
3615 5184 0.618458 ACGGCAAGATCTTTAGGGCA 59.382 50.000 15.13 0.00 0.00 5.36
3616 5185 1.751437 AACGGCAAGATCTTTAGGGC 58.249 50.000 4.86 6.08 0.00 5.19
3617 5186 3.610911 AGAAACGGCAAGATCTTTAGGG 58.389 45.455 4.86 0.00 0.00 3.53
3618 5187 6.238484 CCATAAGAAACGGCAAGATCTTTAGG 60.238 42.308 4.86 0.00 33.81 2.69
3619 5188 6.538742 TCCATAAGAAACGGCAAGATCTTTAG 59.461 38.462 4.86 2.70 33.81 1.85
3620 5189 6.315393 GTCCATAAGAAACGGCAAGATCTTTA 59.685 38.462 4.86 0.00 33.81 1.85
3621 5190 5.123979 GTCCATAAGAAACGGCAAGATCTTT 59.876 40.000 4.86 0.00 33.81 2.52
3622 5191 4.636206 GTCCATAAGAAACGGCAAGATCTT 59.364 41.667 0.88 0.88 35.19 2.40
3623 5192 4.192317 GTCCATAAGAAACGGCAAGATCT 58.808 43.478 0.00 0.00 0.00 2.75
3624 5193 3.312697 GGTCCATAAGAAACGGCAAGATC 59.687 47.826 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.