Multiple sequence alignment - TraesCS7A01G309300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G309300 chr7A 100.000 4086 0 0 1 4086 437074431 437070346 0.000000e+00 7546.0
1 TraesCS7A01G309300 chr7A 94.017 234 14 0 61 294 388632126 388632359 5.020000e-94 355.0
2 TraesCS7A01G309300 chr7A 97.386 153 4 0 3321 3473 284010442 284010594 1.130000e-65 261.0
3 TraesCS7A01G309300 chr7A 93.478 46 3 0 4021 4066 520786275 520786230 7.330000e-08 69.4
4 TraesCS7A01G309300 chr7D 96.068 3052 71 23 291 3309 387226418 387223383 0.000000e+00 4926.0
5 TraesCS7A01G309300 chr7D 94.928 138 7 0 3688 3825 387223204 387223067 2.470000e-52 217.0
6 TraesCS7A01G309300 chr7D 94.366 71 4 0 3938 4008 387223028 387222958 4.320000e-20 110.0
7 TraesCS7A01G309300 chr7D 92.754 69 5 0 1 69 593250974 593251042 2.600000e-17 100.0
8 TraesCS7A01G309300 chr7B 96.175 3033 78 21 291 3309 382285098 382282090 0.000000e+00 4924.0
9 TraesCS7A01G309300 chr7B 91.416 233 20 0 61 293 220193501 220193733 1.830000e-83 320.0
10 TraesCS7A01G309300 chr7B 92.982 57 3 1 3686 3742 382281603 382281548 9.410000e-12 82.4
11 TraesCS7A01G309300 chr7B 100.000 41 0 0 61 101 7347640 7347600 4.380000e-10 76.8
12 TraesCS7A01G309300 chr3A 96.581 234 8 0 61 294 734448205 734447972 4.950000e-104 388.0
13 TraesCS7A01G309300 chr3A 96.815 157 5 0 3321 3477 199578295 199578451 3.130000e-66 263.0
14 TraesCS7A01G309300 chr3A 92.647 68 4 1 1 67 64085293 64085226 3.360000e-16 97.1
15 TraesCS7A01G309300 chr6A 96.121 232 9 0 61 292 139056998 139057229 2.980000e-101 379.0
16 TraesCS7A01G309300 chr6A 86.667 60 7 1 4008 4066 538048102 538048043 9.480000e-07 65.8
17 TraesCS7A01G309300 chr1D 93.119 218 15 0 61 278 7101913 7101696 1.830000e-83 320.0
18 TraesCS7A01G309300 chr1D 92.000 50 4 0 4017 4066 429703134 429703183 2.040000e-08 71.3
19 TraesCS7A01G309300 chr2A 98.039 153 3 0 3321 3473 453894250 453894098 2.420000e-67 267.0
20 TraesCS7A01G309300 chr2A 97.386 153 4 0 3321 3473 143796941 143796789 1.130000e-65 261.0
21 TraesCS7A01G309300 chr2A 96.721 61 2 0 1 61 98897472 98897412 7.230000e-18 102.0
22 TraesCS7A01G309300 chr5A 97.386 153 4 0 3321 3473 434410073 434410225 1.130000e-65 261.0
23 TraesCS7A01G309300 chr5A 97.386 153 4 0 3321 3473 494949177 494949329 1.130000e-65 261.0
24 TraesCS7A01G309300 chr5A 96.250 160 4 2 3316 3473 702727794 702727953 1.130000e-65 261.0
25 TraesCS7A01G309300 chr4A 97.386 153 4 0 3321 3473 502922390 502922238 1.130000e-65 261.0
26 TraesCS7A01G309300 chr4A 97.386 153 4 0 3321 3473 561518889 561518737 1.130000e-65 261.0
27 TraesCS7A01G309300 chr4A 92.647 68 4 1 1 67 16984021 16984088 3.360000e-16 97.1
28 TraesCS7A01G309300 chr4A 91.667 48 3 1 4024 4071 646585301 646585347 9.480000e-07 65.8
29 TraesCS7A01G309300 chr3D 92.045 176 14 0 117 292 351948210 351948385 8.770000e-62 248.0
30 TraesCS7A01G309300 chr3B 92.500 160 12 0 135 294 462619586 462619745 3.180000e-56 230.0
31 TraesCS7A01G309300 chr3B 94.030 67 2 2 4 69 380897378 380897313 2.600000e-17 100.0
32 TraesCS7A01G309300 chr3B 91.667 48 4 0 4018 4065 725802490 725802537 2.640000e-07 67.6
33 TraesCS7A01G309300 chr4D 91.071 168 14 1 128 294 29423086 29423253 4.110000e-55 226.0
34 TraesCS7A01G309300 chr2D 91.411 163 13 1 134 295 82669105 82669267 5.320000e-54 222.0
35 TraesCS7A01G309300 chr2D 91.667 48 1 3 4036 4081 14893809 14893763 3.410000e-06 63.9
36 TraesCS7A01G309300 chrUn 95.455 66 2 1 1 66 257411709 257411645 2.010000e-18 104.0
37 TraesCS7A01G309300 chr6B 95.455 66 2 1 1 66 92186992 92186928 2.010000e-18 104.0
38 TraesCS7A01G309300 chr2B 96.774 62 2 0 2 63 94937328 94937267 2.010000e-18 104.0
39 TraesCS7A01G309300 chr2B 91.667 72 3 3 1 70 74196814 74196744 3.360000e-16 97.1
40 TraesCS7A01G309300 chr2B 88.889 54 3 3 4030 4081 197957472 197957524 3.410000e-06 63.9
41 TraesCS7A01G309300 chr1A 86.667 60 6 2 4023 4082 8131647 8131704 9.480000e-07 65.8
42 TraesCS7A01G309300 chr1A 90.196 51 3 2 4030 4078 351005470 351005520 9.480000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G309300 chr7A 437070346 437074431 4085 True 7546.0 7546 100.000000 1 4086 1 chr7A.!!$R1 4085
1 TraesCS7A01G309300 chr7D 387222958 387226418 3460 True 1751.0 4926 95.120667 291 4008 3 chr7D.!!$R1 3717
2 TraesCS7A01G309300 chr7B 382281548 382285098 3550 True 2503.2 4924 94.578500 291 3742 2 chr7B.!!$R2 3451

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.036306 GGTGAACCCACGGAGTCAAT 59.964 55.000 0.0 0.0 41.61 2.57 F
268 269 0.323629 TGAACCCACGGAGTCAATCC 59.676 55.000 0.0 0.0 41.61 3.01 F
1630 1632 1.282738 TCATGCACATCACCCATGAGT 59.717 47.619 0.0 0.0 40.09 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1632 0.185901 AGGCCCAGCAGAAAGAACAA 59.814 50.000 0.00 0.0 0.00 2.83 R
1863 1868 1.681166 CCATTCTCACCAGGCAAGGAG 60.681 57.143 2.81 0.0 0.00 3.69 R
3463 3499 0.033503 TCCATCTAGTCAGTGGCGGA 60.034 55.000 0.00 0.0 33.01 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.715344 GTTCGTTGTACTACCATGATTGAA 57.285 37.500 0.00 0.00 0.00 2.69
24 25 6.762108 GTTCGTTGTACTACCATGATTGAAG 58.238 40.000 0.00 0.00 0.00 3.02
25 26 6.275494 TCGTTGTACTACCATGATTGAAGA 57.725 37.500 0.00 0.00 0.00 2.87
26 27 6.873997 TCGTTGTACTACCATGATTGAAGAT 58.126 36.000 0.00 0.00 0.00 2.40
27 28 6.756542 TCGTTGTACTACCATGATTGAAGATG 59.243 38.462 0.00 0.00 0.00 2.90
28 29 6.756542 CGTTGTACTACCATGATTGAAGATGA 59.243 38.462 0.00 0.00 0.00 2.92
29 30 7.277760 CGTTGTACTACCATGATTGAAGATGAA 59.722 37.037 0.00 0.00 0.00 2.57
30 31 9.113838 GTTGTACTACCATGATTGAAGATGAAT 57.886 33.333 0.00 0.00 0.00 2.57
32 33 9.987272 TGTACTACCATGATTGAAGATGAATAG 57.013 33.333 0.00 0.00 0.00 1.73
35 36 8.932610 ACTACCATGATTGAAGATGAATAGACT 58.067 33.333 0.00 0.00 0.00 3.24
36 37 9.205719 CTACCATGATTGAAGATGAATAGACTG 57.794 37.037 0.00 0.00 0.00 3.51
37 38 7.799081 ACCATGATTGAAGATGAATAGACTGA 58.201 34.615 0.00 0.00 0.00 3.41
38 39 8.270030 ACCATGATTGAAGATGAATAGACTGAA 58.730 33.333 0.00 0.00 0.00 3.02
39 40 9.117183 CCATGATTGAAGATGAATAGACTGAAA 57.883 33.333 0.00 0.00 0.00 2.69
79 80 4.785669 AAAGAGAAATCTTAGCGATGCG 57.214 40.909 0.00 0.00 31.20 4.73
80 81 2.748605 AGAGAAATCTTAGCGATGCGG 58.251 47.619 0.00 0.00 31.20 5.69
81 82 1.795286 GAGAAATCTTAGCGATGCGGG 59.205 52.381 0.00 0.00 31.20 6.13
82 83 0.235926 GAAATCTTAGCGATGCGGGC 59.764 55.000 0.00 0.00 31.20 6.13
83 84 1.166531 AAATCTTAGCGATGCGGGCC 61.167 55.000 0.00 0.00 31.20 5.80
84 85 2.324014 AATCTTAGCGATGCGGGCCA 62.324 55.000 4.39 0.00 31.20 5.36
85 86 2.324014 ATCTTAGCGATGCGGGCCAA 62.324 55.000 4.39 0.00 0.00 4.52
86 87 2.513666 TTAGCGATGCGGGCCAAG 60.514 61.111 4.39 0.00 0.00 3.61
87 88 4.545706 TAGCGATGCGGGCCAAGG 62.546 66.667 4.39 0.00 0.00 3.61
91 92 4.802051 GATGCGGGCCAAGGCAGA 62.802 66.667 18.37 0.00 43.27 4.26
92 93 4.809496 ATGCGGGCCAAGGCAGAG 62.809 66.667 18.37 4.48 43.27 3.35
95 96 4.785453 CGGGCCAAGGCAGAGGTC 62.785 72.222 13.87 0.00 44.11 3.85
96 97 4.432741 GGGCCAAGGCAGAGGTCC 62.433 72.222 13.87 0.00 43.46 4.46
97 98 3.650950 GGCCAAGGCAGAGGTCCA 61.651 66.667 13.87 0.00 44.11 4.02
98 99 2.045536 GCCAAGGCAGAGGTCCAG 60.046 66.667 6.14 0.00 41.49 3.86
99 100 2.045536 CCAAGGCAGAGGTCCAGC 60.046 66.667 0.00 0.00 0.00 4.85
100 101 2.600729 CCAAGGCAGAGGTCCAGCT 61.601 63.158 0.00 0.00 0.00 4.24
101 102 1.376942 CAAGGCAGAGGTCCAGCTG 60.377 63.158 6.78 6.78 35.28 4.24
102 103 1.537397 AAGGCAGAGGTCCAGCTGA 60.537 57.895 17.39 0.00 34.06 4.26
103 104 1.551908 AAGGCAGAGGTCCAGCTGAG 61.552 60.000 17.39 5.49 34.06 3.35
104 105 2.125188 GCAGAGGTCCAGCTGAGC 60.125 66.667 17.39 11.09 41.93 4.26
105 106 2.952293 GCAGAGGTCCAGCTGAGCA 61.952 63.158 17.39 0.00 44.10 4.26
106 107 1.675801 CAGAGGTCCAGCTGAGCAA 59.324 57.895 17.39 0.00 44.10 3.91
107 108 0.673022 CAGAGGTCCAGCTGAGCAAC 60.673 60.000 17.39 7.59 44.10 4.17
108 109 1.376553 GAGGTCCAGCTGAGCAACC 60.377 63.158 17.39 16.21 44.10 3.77
109 110 1.835927 GAGGTCCAGCTGAGCAACCT 61.836 60.000 21.17 21.17 44.10 3.50
110 111 0.545309 AGGTCCAGCTGAGCAACCTA 60.545 55.000 20.11 0.00 44.10 3.08
111 112 0.391793 GGTCCAGCTGAGCAACCTAC 60.392 60.000 17.39 0.00 41.24 3.18
112 113 0.737715 GTCCAGCTGAGCAACCTACG 60.738 60.000 17.39 0.00 0.00 3.51
113 114 0.898326 TCCAGCTGAGCAACCTACGA 60.898 55.000 17.39 0.00 0.00 3.43
114 115 0.176680 CCAGCTGAGCAACCTACGAT 59.823 55.000 17.39 0.00 0.00 3.73
115 116 1.565305 CAGCTGAGCAACCTACGATC 58.435 55.000 8.42 0.00 0.00 3.69
116 117 1.134995 CAGCTGAGCAACCTACGATCA 60.135 52.381 8.42 0.00 0.00 2.92
117 118 1.550524 AGCTGAGCAACCTACGATCAA 59.449 47.619 7.39 0.00 0.00 2.57
118 119 1.661112 GCTGAGCAACCTACGATCAAC 59.339 52.381 0.00 0.00 0.00 3.18
119 120 2.930887 GCTGAGCAACCTACGATCAACA 60.931 50.000 0.00 0.00 0.00 3.33
120 121 3.325870 CTGAGCAACCTACGATCAACAA 58.674 45.455 0.00 0.00 0.00 2.83
121 122 3.064207 TGAGCAACCTACGATCAACAAC 58.936 45.455 0.00 0.00 0.00 3.32
122 123 2.066262 AGCAACCTACGATCAACAACG 58.934 47.619 0.00 0.00 0.00 4.10
123 124 1.796459 GCAACCTACGATCAACAACGT 59.204 47.619 0.00 0.00 44.72 3.99
124 125 2.988493 GCAACCTACGATCAACAACGTA 59.012 45.455 0.00 0.00 42.61 3.57
125 126 3.181537 GCAACCTACGATCAACAACGTAC 60.182 47.826 0.00 0.00 42.61 3.67
126 127 2.855180 ACCTACGATCAACAACGTACG 58.145 47.619 15.01 15.01 42.61 3.67
127 128 2.179589 CCTACGATCAACAACGTACGG 58.820 52.381 21.06 5.00 42.61 4.02
128 129 2.159531 CCTACGATCAACAACGTACGGA 60.160 50.000 21.06 6.93 42.61 4.69
129 130 2.420628 ACGATCAACAACGTACGGAA 57.579 45.000 21.06 0.00 40.92 4.30
130 131 2.741612 ACGATCAACAACGTACGGAAA 58.258 42.857 21.06 0.00 40.92 3.13
131 132 3.122297 ACGATCAACAACGTACGGAAAA 58.878 40.909 21.06 0.00 40.92 2.29
132 133 3.742369 ACGATCAACAACGTACGGAAAAT 59.258 39.130 21.06 5.09 40.92 1.82
133 134 4.079028 CGATCAACAACGTACGGAAAATG 58.921 43.478 21.06 11.51 0.00 2.32
134 135 4.143284 CGATCAACAACGTACGGAAAATGA 60.143 41.667 21.06 16.17 0.00 2.57
135 136 5.612925 CGATCAACAACGTACGGAAAATGAA 60.613 40.000 21.06 0.00 0.00 2.57
136 137 5.676532 TCAACAACGTACGGAAAATGAAT 57.323 34.783 21.06 0.00 0.00 2.57
137 138 5.681880 TCAACAACGTACGGAAAATGAATC 58.318 37.500 21.06 0.00 0.00 2.52
138 139 5.236695 TCAACAACGTACGGAAAATGAATCA 59.763 36.000 21.06 0.00 0.00 2.57
139 140 5.277601 ACAACGTACGGAAAATGAATCAG 57.722 39.130 21.06 0.00 0.00 2.90
140 141 4.153475 ACAACGTACGGAAAATGAATCAGG 59.847 41.667 21.06 0.00 0.00 3.86
141 142 3.934068 ACGTACGGAAAATGAATCAGGT 58.066 40.909 21.06 0.00 0.00 4.00
142 143 3.930848 ACGTACGGAAAATGAATCAGGTC 59.069 43.478 21.06 0.00 0.00 3.85
143 144 3.000078 CGTACGGAAAATGAATCAGGTCG 60.000 47.826 7.57 0.00 0.00 4.79
144 145 2.356135 ACGGAAAATGAATCAGGTCGG 58.644 47.619 0.00 0.00 0.00 4.79
145 146 2.027561 ACGGAAAATGAATCAGGTCGGA 60.028 45.455 0.00 0.00 0.00 4.55
146 147 2.351726 CGGAAAATGAATCAGGTCGGAC 59.648 50.000 0.00 0.00 0.00 4.79
147 148 2.351726 GGAAAATGAATCAGGTCGGACG 59.648 50.000 1.43 0.00 0.00 4.79
148 149 2.024176 AAATGAATCAGGTCGGACGG 57.976 50.000 1.43 0.00 0.00 4.79
149 150 1.191535 AATGAATCAGGTCGGACGGA 58.808 50.000 1.43 2.90 0.00 4.69
150 151 0.460311 ATGAATCAGGTCGGACGGAC 59.540 55.000 4.63 4.63 45.31 4.79
157 158 3.726517 GTCGGACGGACGGACGAA 61.727 66.667 12.90 0.00 38.62 3.85
158 159 3.726517 TCGGACGGACGGACGAAC 61.727 66.667 8.01 2.13 37.61 3.95
159 160 4.029186 CGGACGGACGGACGAACA 62.029 66.667 8.01 0.00 37.61 3.18
160 161 2.570181 GGACGGACGGACGAACAT 59.430 61.111 8.01 0.00 37.61 2.71
161 162 1.804326 GGACGGACGGACGAACATG 60.804 63.158 8.01 0.00 37.61 3.21
162 163 2.431942 ACGGACGGACGAACATGC 60.432 61.111 8.01 0.00 37.61 4.06
163 164 2.126071 CGGACGGACGAACATGCT 60.126 61.111 0.00 0.00 35.47 3.79
164 165 1.138036 CGGACGGACGAACATGCTA 59.862 57.895 0.00 0.00 35.47 3.49
165 166 0.248907 CGGACGGACGAACATGCTAT 60.249 55.000 0.00 0.00 35.47 2.97
166 167 1.801395 CGGACGGACGAACATGCTATT 60.801 52.381 0.00 0.00 35.47 1.73
167 168 2.542205 CGGACGGACGAACATGCTATTA 60.542 50.000 0.00 0.00 35.47 0.98
168 169 3.450578 GGACGGACGAACATGCTATTAA 58.549 45.455 0.00 0.00 0.00 1.40
169 170 4.056050 GGACGGACGAACATGCTATTAAT 58.944 43.478 0.00 0.00 0.00 1.40
170 171 5.224888 GGACGGACGAACATGCTATTAATA 58.775 41.667 0.00 0.00 0.00 0.98
171 172 5.118203 GGACGGACGAACATGCTATTAATAC 59.882 44.000 0.00 0.00 0.00 1.89
172 173 5.839621 ACGGACGAACATGCTATTAATACT 58.160 37.500 0.00 0.00 0.00 2.12
173 174 6.973843 ACGGACGAACATGCTATTAATACTA 58.026 36.000 0.00 0.00 0.00 1.82
174 175 6.860023 ACGGACGAACATGCTATTAATACTAC 59.140 38.462 0.00 0.00 0.00 2.73
175 176 6.307318 CGGACGAACATGCTATTAATACTACC 59.693 42.308 0.00 0.00 0.00 3.18
176 177 7.376615 GGACGAACATGCTATTAATACTACCT 58.623 38.462 0.00 0.00 0.00 3.08
177 178 7.541437 GGACGAACATGCTATTAATACTACCTC 59.459 40.741 0.00 0.00 0.00 3.85
178 179 7.082602 ACGAACATGCTATTAATACTACCTCG 58.917 38.462 0.00 0.02 0.00 4.63
179 180 7.082602 CGAACATGCTATTAATACTACCTCGT 58.917 38.462 0.00 0.00 0.00 4.18
180 181 7.594015 CGAACATGCTATTAATACTACCTCGTT 59.406 37.037 0.00 0.00 0.00 3.85
181 182 9.257651 GAACATGCTATTAATACTACCTCGTTT 57.742 33.333 0.00 0.00 0.00 3.60
183 184 9.688592 ACATGCTATTAATACTACCTCGTTTAC 57.311 33.333 0.00 0.00 0.00 2.01
184 185 9.687210 CATGCTATTAATACTACCTCGTTTACA 57.313 33.333 0.00 0.00 0.00 2.41
193 194 9.807649 AATACTACCTCGTTTACATTACGATTT 57.192 29.630 0.00 0.00 45.76 2.17
194 195 9.807649 ATACTACCTCGTTTACATTACGATTTT 57.192 29.630 0.00 0.00 45.76 1.82
195 196 7.956558 ACTACCTCGTTTACATTACGATTTTG 58.043 34.615 0.00 0.00 45.76 2.44
196 197 6.790285 ACCTCGTTTACATTACGATTTTGT 57.210 33.333 0.00 0.00 45.76 2.83
197 198 6.824557 ACCTCGTTTACATTACGATTTTGTC 58.175 36.000 0.00 0.00 45.76 3.18
198 199 6.647895 ACCTCGTTTACATTACGATTTTGTCT 59.352 34.615 0.00 0.00 45.76 3.41
199 200 7.814107 ACCTCGTTTACATTACGATTTTGTCTA 59.186 33.333 0.00 0.00 45.76 2.59
200 201 8.814235 CCTCGTTTACATTACGATTTTGTCTAT 58.186 33.333 0.00 0.00 45.76 1.98
203 204 9.546098 CGTTTACATTACGATTTTGTCTATACG 57.454 33.333 0.00 0.00 41.33 3.06
214 215 9.551200 CGATTTTGTCTATACGAATCGTAAAAG 57.449 33.333 19.70 18.20 45.39 2.27
215 216 9.354544 GATTTTGTCTATACGAATCGTAAAAGC 57.645 33.333 19.70 14.19 45.39 3.51
216 217 6.486657 TTGTCTATACGAATCGTAAAAGCG 57.513 37.500 19.70 6.70 45.39 4.68
217 218 5.572211 TGTCTATACGAATCGTAAAAGCGT 58.428 37.500 19.70 4.65 45.39 5.07
218 219 6.714492 TGTCTATACGAATCGTAAAAGCGTA 58.286 36.000 19.70 5.59 45.39 4.42
219 220 7.355017 TGTCTATACGAATCGTAAAAGCGTAT 58.645 34.615 19.70 0.00 45.39 3.06
220 221 7.857389 TGTCTATACGAATCGTAAAAGCGTATT 59.143 33.333 19.70 2.47 45.39 1.89
221 222 9.318041 GTCTATACGAATCGTAAAAGCGTATTA 57.682 33.333 19.70 3.53 45.39 0.98
222 223 9.318041 TCTATACGAATCGTAAAAGCGTATTAC 57.682 33.333 19.70 0.87 45.39 1.89
229 230 4.766969 GTAAAAGCGTATTACGACTGGG 57.233 45.455 19.86 0.00 46.05 4.45
230 231 3.323751 AAAAGCGTATTACGACTGGGT 57.676 42.857 19.86 3.95 46.05 4.51
231 232 2.288961 AAGCGTATTACGACTGGGTG 57.711 50.000 19.86 0.00 46.05 4.61
232 233 0.458669 AGCGTATTACGACTGGGTGG 59.541 55.000 19.86 0.00 46.05 4.61
233 234 0.457035 GCGTATTACGACTGGGTGGA 59.543 55.000 19.86 0.00 46.05 4.02
234 235 1.135024 GCGTATTACGACTGGGTGGAA 60.135 52.381 19.86 0.00 46.05 3.53
235 236 2.805845 CGTATTACGACTGGGTGGAAG 58.194 52.381 10.70 0.00 46.05 3.46
236 237 2.547826 GTATTACGACTGGGTGGAAGC 58.452 52.381 0.00 0.00 0.00 3.86
237 238 0.108329 ATTACGACTGGGTGGAAGCG 60.108 55.000 0.00 0.00 33.03 4.68
238 239 1.466025 TTACGACTGGGTGGAAGCGT 61.466 55.000 0.00 0.00 33.89 5.07
239 240 0.608856 TACGACTGGGTGGAAGCGTA 60.609 55.000 0.00 0.00 32.46 4.42
240 241 1.255667 ACGACTGGGTGGAAGCGTAT 61.256 55.000 0.00 0.00 33.03 3.06
241 242 0.108329 CGACTGGGTGGAAGCGTATT 60.108 55.000 0.00 0.00 33.03 1.89
242 243 1.369625 GACTGGGTGGAAGCGTATTG 58.630 55.000 0.00 0.00 33.03 1.90
243 244 0.690762 ACTGGGTGGAAGCGTATTGT 59.309 50.000 0.00 0.00 33.03 2.71
244 245 1.086696 CTGGGTGGAAGCGTATTGTG 58.913 55.000 0.00 0.00 33.03 3.33
245 246 0.687920 TGGGTGGAAGCGTATTGTGA 59.312 50.000 0.00 0.00 33.03 3.58
246 247 1.084289 GGGTGGAAGCGTATTGTGAC 58.916 55.000 0.00 0.00 33.03 3.67
247 248 0.719465 GGTGGAAGCGTATTGTGACG 59.281 55.000 0.00 0.00 45.70 4.35
248 249 0.719465 GTGGAAGCGTATTGTGACGG 59.281 55.000 0.00 0.00 43.13 4.79
253 254 3.941194 GCGTATTGTGACGGTGAAC 57.059 52.632 0.00 0.00 43.13 3.18
254 255 0.441145 GCGTATTGTGACGGTGAACC 59.559 55.000 0.00 0.00 43.13 3.62
255 256 1.073177 CGTATTGTGACGGTGAACCC 58.927 55.000 0.00 0.00 39.19 4.11
256 257 1.605968 CGTATTGTGACGGTGAACCCA 60.606 52.381 0.00 0.00 39.19 4.51
257 258 1.802365 GTATTGTGACGGTGAACCCAC 59.198 52.381 2.84 2.84 42.46 4.61
258 259 0.882927 ATTGTGACGGTGAACCCACG 60.883 55.000 0.00 0.00 44.09 4.94
259 260 2.663852 GTGACGGTGAACCCACGG 60.664 66.667 0.00 0.00 44.09 4.94
260 261 2.838693 TGACGGTGAACCCACGGA 60.839 61.111 9.54 0.00 43.69 4.69
261 262 2.048503 GACGGTGAACCCACGGAG 60.049 66.667 9.54 0.00 43.69 4.63
263 264 2.048503 CGGTGAACCCACGGAGTC 60.049 66.667 0.00 0.00 41.61 3.36
264 265 2.863346 CGGTGAACCCACGGAGTCA 61.863 63.158 0.00 0.00 41.61 3.41
265 266 1.448497 GGTGAACCCACGGAGTCAA 59.552 57.895 0.00 0.00 41.61 3.18
266 267 0.036306 GGTGAACCCACGGAGTCAAT 59.964 55.000 0.00 0.00 41.61 2.57
267 268 1.439679 GTGAACCCACGGAGTCAATC 58.560 55.000 0.00 0.00 41.61 2.67
268 269 0.323629 TGAACCCACGGAGTCAATCC 59.676 55.000 0.00 0.00 41.61 3.01
281 282 6.619801 GGAGTCAATCCGTGCTTTATTATT 57.380 37.500 0.00 0.00 38.67 1.40
282 283 7.724305 GGAGTCAATCCGTGCTTTATTATTA 57.276 36.000 0.00 0.00 38.67 0.98
283 284 7.797819 GGAGTCAATCCGTGCTTTATTATTAG 58.202 38.462 0.00 0.00 38.67 1.73
284 285 7.095187 GGAGTCAATCCGTGCTTTATTATTAGG 60.095 40.741 0.00 0.00 38.67 2.69
285 286 6.710744 AGTCAATCCGTGCTTTATTATTAGGG 59.289 38.462 0.00 0.00 0.00 3.53
286 287 6.708949 GTCAATCCGTGCTTTATTATTAGGGA 59.291 38.462 0.00 0.00 0.00 4.20
287 288 7.227910 GTCAATCCGTGCTTTATTATTAGGGAA 59.772 37.037 0.00 0.00 0.00 3.97
288 289 7.776030 TCAATCCGTGCTTTATTATTAGGGAAA 59.224 33.333 0.00 0.00 0.00 3.13
289 290 7.745620 ATCCGTGCTTTATTATTAGGGAAAG 57.254 36.000 0.00 0.00 33.05 2.62
510 511 5.886960 AGATGTTGGAGTAAGATTTGCAC 57.113 39.130 0.00 0.00 0.00 4.57
617 618 2.030007 ACCGTTTGTGCCTGATTCAATG 60.030 45.455 0.00 0.00 0.00 2.82
874 876 2.816087 ACAGCACAAGAATCATGACCAC 59.184 45.455 0.00 0.00 0.00 4.16
1539 1541 1.401905 GGGGCATTCTCGATGAACAAC 59.598 52.381 0.00 0.00 38.03 3.32
1630 1632 1.282738 TCATGCACATCACCCATGAGT 59.717 47.619 0.00 0.00 40.09 3.41
1838 1843 5.128205 TGATGGTGATGATAGCAAAGAAGG 58.872 41.667 0.00 0.00 0.00 3.46
1863 1868 2.351157 GGACTTTGTTGATGTGCTGCTC 60.351 50.000 0.00 0.00 0.00 4.26
2088 2096 7.519032 TTTTATTAAAGACCTGACCACCAAG 57.481 36.000 0.00 0.00 0.00 3.61
2100 2108 5.301805 CCTGACCACCAAGAAGTTATTTTGT 59.698 40.000 0.00 0.00 0.00 2.83
2102 2110 7.266922 TGACCACCAAGAAGTTATTTTGTAC 57.733 36.000 0.00 0.00 0.00 2.90
2103 2111 7.057894 TGACCACCAAGAAGTTATTTTGTACT 58.942 34.615 0.00 0.00 0.00 2.73
2104 2112 7.227910 TGACCACCAAGAAGTTATTTTGTACTC 59.772 37.037 0.00 0.00 0.00 2.59
2255 2272 6.323203 ACTAGTAGTTGTTCTCGCTTGTAA 57.677 37.500 0.00 0.00 0.00 2.41
2310 2327 9.739276 TTGTAGATCATCTTCATTTAGGTTTGT 57.261 29.630 0.00 0.00 0.00 2.83
2353 2370 1.863662 ATGAACACTGCTGCTGCTGC 61.864 55.000 22.51 22.51 41.07 5.25
2354 2371 2.203308 AACACTGCTGCTGCTGCT 60.203 55.556 27.67 9.87 41.07 4.24
2355 2372 2.459421 GAACACTGCTGCTGCTGCTG 62.459 60.000 27.75 27.75 41.07 4.41
2428 2445 0.319900 ATACGCAGGACATGATCGCC 60.320 55.000 0.00 0.00 0.00 5.54
2437 2454 1.300465 CATGATCGCCGCTGCTACT 60.300 57.895 0.00 0.00 34.43 2.57
2440 2457 1.946650 GATCGCCGCTGCTACTGAC 60.947 63.158 0.00 0.00 34.43 3.51
2491 2508 0.460284 CCGAGGTGATCAAGAACCCG 60.460 60.000 0.00 0.86 37.13 5.28
2665 2682 1.733399 GTCACTCAAGGCGACGACC 60.733 63.158 0.00 0.00 0.00 4.79
3216 3251 6.910972 CACGATGAATTGAATCATTTCCAGAG 59.089 38.462 13.32 6.74 40.08 3.35
3221 3256 8.296211 TGAATTGAATCATTTCCAGAGCATTA 57.704 30.769 13.32 0.00 0.00 1.90
3222 3257 8.192774 TGAATTGAATCATTTCCAGAGCATTAC 58.807 33.333 13.32 0.00 0.00 1.89
3223 3258 7.893124 ATTGAATCATTTCCAGAGCATTACT 57.107 32.000 0.00 0.00 0.00 2.24
3237 3272 4.093011 AGCATTACTTGTCTCCTCTCTGT 58.907 43.478 0.00 0.00 0.00 3.41
3251 3287 3.862267 CCTCTCTGTTCTTGCGTTCATAG 59.138 47.826 0.00 0.00 0.00 2.23
3256 3292 2.805671 TGTTCTTGCGTTCATAGGTGTG 59.194 45.455 0.00 0.00 0.00 3.82
3257 3293 1.438651 TCTTGCGTTCATAGGTGTGC 58.561 50.000 0.00 0.00 0.00 4.57
3258 3294 1.001974 TCTTGCGTTCATAGGTGTGCT 59.998 47.619 0.00 0.00 0.00 4.40
3259 3295 2.232696 TCTTGCGTTCATAGGTGTGCTA 59.767 45.455 0.00 0.00 0.00 3.49
3260 3296 2.753055 TGCGTTCATAGGTGTGCTAA 57.247 45.000 0.00 0.00 0.00 3.09
3261 3297 3.260475 TGCGTTCATAGGTGTGCTAAT 57.740 42.857 0.00 0.00 0.00 1.73
3262 3298 3.194861 TGCGTTCATAGGTGTGCTAATC 58.805 45.455 0.00 0.00 0.00 1.75
3272 3308 8.097038 TCATAGGTGTGCTAATCAATTAGATCC 58.903 37.037 12.82 8.54 41.72 3.36
3309 3345 8.675504 TGAACAGAGATAGTAGCTTTGTAGTAC 58.324 37.037 11.55 5.63 31.37 2.73
3310 3346 8.810990 AACAGAGATAGTAGCTTTGTAGTACT 57.189 34.615 11.55 0.00 31.37 2.73
3311 3347 9.902684 AACAGAGATAGTAGCTTTGTAGTACTA 57.097 33.333 11.55 0.00 34.55 1.82
3313 3349 9.767228 CAGAGATAGTAGCTTTGTAGTACTAGA 57.233 37.037 1.87 0.00 33.77 2.43
3316 3352 9.005777 AGATAGTAGCTTTGTAGTACTAGATGC 57.994 37.037 1.87 9.70 33.77 3.91
3317 3353 8.693120 ATAGTAGCTTTGTAGTACTAGATGCA 57.307 34.615 19.95 7.34 33.77 3.96
3318 3354 6.797454 AGTAGCTTTGTAGTACTAGATGCAC 58.203 40.000 19.95 16.32 0.00 4.57
3319 3355 4.673441 AGCTTTGTAGTACTAGATGCACG 58.327 43.478 19.95 5.77 0.00 5.34
3320 3356 3.797256 GCTTTGTAGTACTAGATGCACGG 59.203 47.826 15.73 4.19 0.00 4.94
3321 3357 4.360563 CTTTGTAGTACTAGATGCACGGG 58.639 47.826 1.87 0.00 0.00 5.28
3322 3358 1.679680 TGTAGTACTAGATGCACGGGC 59.320 52.381 0.34 0.34 41.68 6.13
3323 3359 0.949397 TAGTACTAGATGCACGGGCG 59.051 55.000 4.58 0.00 45.35 6.13
3324 3360 1.299926 GTACTAGATGCACGGGCGG 60.300 63.158 4.58 0.00 45.35 6.13
3325 3361 1.454295 TACTAGATGCACGGGCGGA 60.454 57.895 4.58 0.00 45.35 5.54
3326 3362 1.452953 TACTAGATGCACGGGCGGAG 61.453 60.000 4.58 1.24 45.35 4.63
3341 3377 2.697431 CGGAGCTAGATGCAGACTAC 57.303 55.000 0.00 0.00 45.94 2.73
3342 3378 1.069568 CGGAGCTAGATGCAGACTACG 60.070 57.143 0.00 0.00 45.94 3.51
3343 3379 1.335506 GGAGCTAGATGCAGACTACGC 60.336 57.143 0.00 5.09 45.94 4.42
3344 3380 0.671251 AGCTAGATGCAGACTACGCC 59.329 55.000 0.00 0.00 45.94 5.68
3345 3381 0.671251 GCTAGATGCAGACTACGCCT 59.329 55.000 0.00 0.00 42.31 5.52
3346 3382 1.601663 GCTAGATGCAGACTACGCCTG 60.602 57.143 0.00 0.00 42.31 4.85
3347 3383 1.000827 CTAGATGCAGACTACGCCTGG 60.001 57.143 0.00 0.00 32.51 4.45
3348 3384 1.227380 GATGCAGACTACGCCTGGG 60.227 63.158 0.00 0.00 32.51 4.45
3349 3385 2.650813 GATGCAGACTACGCCTGGGG 62.651 65.000 9.49 9.49 32.51 4.96
3350 3386 4.840005 GCAGACTACGCCTGGGGC 62.840 72.222 11.10 0.00 46.75 5.80
3359 3395 4.730487 GCCTGGGGCTATGCTATG 57.270 61.111 0.80 0.00 46.69 2.23
3360 3396 1.763770 GCCTGGGGCTATGCTATGT 59.236 57.895 0.80 0.00 46.69 2.29
3361 3397 0.111253 GCCTGGGGCTATGCTATGTT 59.889 55.000 0.80 0.00 46.69 2.71
3362 3398 1.901591 CCTGGGGCTATGCTATGTTG 58.098 55.000 0.00 0.00 0.00 3.33
3363 3399 1.421268 CCTGGGGCTATGCTATGTTGA 59.579 52.381 0.00 0.00 0.00 3.18
3364 3400 2.551721 CCTGGGGCTATGCTATGTTGAG 60.552 54.545 0.00 0.00 0.00 3.02
3365 3401 2.105477 CTGGGGCTATGCTATGTTGAGT 59.895 50.000 0.00 0.00 0.00 3.41
3366 3402 2.158769 TGGGGCTATGCTATGTTGAGTG 60.159 50.000 0.00 0.00 0.00 3.51
3367 3403 2.104792 GGGGCTATGCTATGTTGAGTGA 59.895 50.000 0.00 0.00 0.00 3.41
3368 3404 3.244700 GGGGCTATGCTATGTTGAGTGAT 60.245 47.826 0.00 0.00 0.00 3.06
3369 3405 4.020218 GGGGCTATGCTATGTTGAGTGATA 60.020 45.833 0.00 0.00 0.00 2.15
3370 3406 5.513094 GGGGCTATGCTATGTTGAGTGATAA 60.513 44.000 0.00 0.00 0.00 1.75
3371 3407 5.997746 GGGCTATGCTATGTTGAGTGATAAA 59.002 40.000 0.00 0.00 0.00 1.40
3372 3408 6.148480 GGGCTATGCTATGTTGAGTGATAAAG 59.852 42.308 0.00 0.00 0.00 1.85
3373 3409 6.708054 GGCTATGCTATGTTGAGTGATAAAGT 59.292 38.462 0.00 0.00 0.00 2.66
3374 3410 7.227512 GGCTATGCTATGTTGAGTGATAAAGTT 59.772 37.037 0.00 0.00 0.00 2.66
3375 3411 8.279103 GCTATGCTATGTTGAGTGATAAAGTTC 58.721 37.037 0.00 0.00 0.00 3.01
3376 3412 9.539825 CTATGCTATGTTGAGTGATAAAGTTCT 57.460 33.333 0.00 0.00 0.00 3.01
3379 3415 9.317936 TGCTATGTTGAGTGATAAAGTTCTATG 57.682 33.333 0.00 0.00 0.00 2.23
3380 3416 9.534565 GCTATGTTGAGTGATAAAGTTCTATGA 57.465 33.333 0.00 0.00 0.00 2.15
3395 3431 9.578439 AAAGTTCTATGATTTTCTATGCTTTGC 57.422 29.630 0.00 0.00 0.00 3.68
3396 3432 8.284945 AGTTCTATGATTTTCTATGCTTTGCA 57.715 30.769 0.00 0.00 44.86 4.08
3412 3448 7.783090 TGCTTTGCATGAAGAAATTACAAAA 57.217 28.000 0.00 0.00 31.71 2.44
3413 3449 7.853524 TGCTTTGCATGAAGAAATTACAAAAG 58.146 30.769 0.00 0.00 31.71 2.27
3414 3450 7.710044 TGCTTTGCATGAAGAAATTACAAAAGA 59.290 29.630 0.00 0.00 31.71 2.52
3415 3451 8.550376 GCTTTGCATGAAGAAATTACAAAAGAA 58.450 29.630 0.00 0.00 0.00 2.52
3417 3453 9.598517 TTTGCATGAAGAAATTACAAAAGAAGT 57.401 25.926 0.00 0.00 0.00 3.01
3418 3454 9.598517 TTGCATGAAGAAATTACAAAAGAAGTT 57.401 25.926 0.00 0.00 0.00 2.66
3419 3455 9.033481 TGCATGAAGAAATTACAAAAGAAGTTG 57.967 29.630 0.00 0.00 34.52 3.16
3420 3456 9.034544 GCATGAAGAAATTACAAAAGAAGTTGT 57.965 29.630 0.00 0.00 43.95 3.32
3429 3465 8.657074 ATTACAAAAGAAGTTGTTTTTAGGCC 57.343 30.769 7.94 0.00 41.84 5.19
3430 3466 6.294361 ACAAAAGAAGTTGTTTTTAGGCCT 57.706 33.333 11.78 11.78 38.60 5.19
3431 3467 6.106003 ACAAAAGAAGTTGTTTTTAGGCCTG 58.894 36.000 17.99 0.00 38.60 4.85
3432 3468 4.937201 AAGAAGTTGTTTTTAGGCCTGG 57.063 40.909 17.99 0.00 0.00 4.45
3433 3469 3.230976 AGAAGTTGTTTTTAGGCCTGGG 58.769 45.455 17.99 0.00 0.00 4.45
3434 3470 2.009681 AGTTGTTTTTAGGCCTGGGG 57.990 50.000 17.99 0.00 0.00 4.96
3472 3508 4.767255 GGCCTGTCTCCGCCACTG 62.767 72.222 0.00 0.00 45.01 3.66
3473 3509 3.695606 GCCTGTCTCCGCCACTGA 61.696 66.667 0.00 0.00 0.00 3.41
3474 3510 2.262915 CCTGTCTCCGCCACTGAC 59.737 66.667 0.00 0.00 0.00 3.51
3475 3511 2.279069 CCTGTCTCCGCCACTGACT 61.279 63.158 0.00 0.00 0.00 3.41
3476 3512 0.965866 CCTGTCTCCGCCACTGACTA 60.966 60.000 0.00 0.00 0.00 2.59
3477 3513 0.453793 CTGTCTCCGCCACTGACTAG 59.546 60.000 0.00 0.00 0.00 2.57
3478 3514 0.037734 TGTCTCCGCCACTGACTAGA 59.962 55.000 0.00 0.00 0.00 2.43
3479 3515 1.341089 TGTCTCCGCCACTGACTAGAT 60.341 52.381 0.00 0.00 0.00 1.98
3480 3516 1.066303 GTCTCCGCCACTGACTAGATG 59.934 57.143 0.00 0.00 0.00 2.90
3481 3517 0.387202 CTCCGCCACTGACTAGATGG 59.613 60.000 0.00 0.00 36.51 3.51
3482 3518 0.033503 TCCGCCACTGACTAGATGGA 60.034 55.000 0.00 0.00 35.33 3.41
3483 3519 1.043816 CCGCCACTGACTAGATGGAT 58.956 55.000 0.00 0.00 35.33 3.41
3484 3520 1.269988 CCGCCACTGACTAGATGGATG 60.270 57.143 0.00 0.00 35.33 3.51
3485 3521 1.871408 CGCCACTGACTAGATGGATGC 60.871 57.143 0.00 0.00 35.33 3.91
3486 3522 1.139654 GCCACTGACTAGATGGATGCA 59.860 52.381 0.00 0.00 35.33 3.96
3487 3523 2.224475 GCCACTGACTAGATGGATGCAT 60.224 50.000 0.00 0.00 35.33 3.96
3488 3524 3.400255 CCACTGACTAGATGGATGCATG 58.600 50.000 2.46 0.00 35.33 4.06
3489 3525 3.400255 CACTGACTAGATGGATGCATGG 58.600 50.000 2.46 0.00 0.00 3.66
3496 3532 3.482156 AGATGGATGCATGGTGTACTC 57.518 47.619 2.46 0.00 0.00 2.59
3500 3536 2.305635 TGGATGCATGGTGTACTCAACT 59.694 45.455 2.46 0.00 31.63 3.16
3524 3560 9.715119 ACTATTGAGTAGATATATATGTGGGCA 57.285 33.333 0.00 0.00 32.65 5.36
3527 3563 7.978099 TGAGTAGATATATATGTGGGCATGT 57.022 36.000 0.00 0.00 36.58 3.21
3528 3564 7.785033 TGAGTAGATATATATGTGGGCATGTG 58.215 38.462 0.00 0.00 36.58 3.21
3532 3568 0.250684 TATATGTGGGCATGTGGCGG 60.251 55.000 0.00 0.00 46.16 6.13
3551 3587 0.387565 GGCAACCATGACAAAACGGT 59.612 50.000 0.00 0.00 33.41 4.83
3552 3588 1.202475 GGCAACCATGACAAAACGGTT 60.202 47.619 0.00 0.00 42.45 4.44
3569 3605 1.821136 GGTTGCTGCAGGCTAAGAAAT 59.179 47.619 17.12 0.00 42.39 2.17
3582 3618 7.228308 GCAGGCTAAGAAATAATCATCTTCTGT 59.772 37.037 0.00 0.00 37.16 3.41
3599 3635 1.672363 CTGTTGCAGAAGCTGTTGTGA 59.328 47.619 0.00 0.00 42.74 3.58
3611 3647 3.273434 GCTGTTGTGAGCTTCATCCATA 58.727 45.455 0.00 0.00 35.95 2.74
3613 3649 3.273434 TGTTGTGAGCTTCATCCATAGC 58.727 45.455 0.00 0.00 37.66 2.97
3615 3651 3.851458 TGTGAGCTTCATCCATAGCAT 57.149 42.857 0.00 0.00 39.85 3.79
3616 3652 3.736720 TGTGAGCTTCATCCATAGCATC 58.263 45.455 0.00 0.00 39.85 3.91
3617 3653 3.135167 TGTGAGCTTCATCCATAGCATCA 59.865 43.478 0.00 0.00 39.85 3.07
3618 3654 4.202430 TGTGAGCTTCATCCATAGCATCAT 60.202 41.667 0.00 0.00 39.85 2.45
3621 3657 4.580868 AGCTTCATCCATAGCATCATCTG 58.419 43.478 0.00 0.00 39.85 2.90
3636 3672 6.438259 CATCATCTGCTGACATTTCTTTCT 57.562 37.500 0.00 0.00 36.48 2.52
3637 3673 6.853720 CATCATCTGCTGACATTTCTTTCTT 58.146 36.000 0.00 0.00 36.48 2.52
3640 3676 6.713903 TCATCTGCTGACATTTCTTTCTTTCT 59.286 34.615 0.00 0.00 0.00 2.52
3641 3677 6.949352 TCTGCTGACATTTCTTTCTTTCTT 57.051 33.333 0.00 0.00 0.00 2.52
3642 3678 7.338800 TCTGCTGACATTTCTTTCTTTCTTT 57.661 32.000 0.00 0.00 0.00 2.52
3644 3680 6.275335 TGCTGACATTTCTTTCTTTCTTTGG 58.725 36.000 0.00 0.00 0.00 3.28
3645 3681 6.096705 TGCTGACATTTCTTTCTTTCTTTGGA 59.903 34.615 0.00 0.00 0.00 3.53
3646 3682 6.980397 GCTGACATTTCTTTCTTTCTTTGGAA 59.020 34.615 0.00 0.00 0.00 3.53
3647 3683 7.492344 GCTGACATTTCTTTCTTTCTTTGGAAA 59.508 33.333 0.00 0.00 38.90 3.13
3650 3686 6.756542 ACATTTCTTTCTTTCTTTGGAAACGG 59.243 34.615 0.00 0.00 36.63 4.44
3651 3687 6.518208 TTTCTTTCTTTCTTTGGAAACGGA 57.482 33.333 0.00 0.00 36.63 4.69
3652 3688 6.709018 TTCTTTCTTTCTTTGGAAACGGAT 57.291 33.333 0.00 0.00 36.63 4.18
3653 3689 6.709018 TCTTTCTTTCTTTGGAAACGGATT 57.291 33.333 0.00 0.00 36.63 3.01
3654 3690 7.107639 TCTTTCTTTCTTTGGAAACGGATTT 57.892 32.000 0.00 0.00 36.63 2.17
3657 3693 4.340950 TCTTTCTTTGGAAACGGATTTGCT 59.659 37.500 0.00 0.00 37.08 3.91
3658 3694 3.641437 TCTTTGGAAACGGATTTGCTG 57.359 42.857 0.00 0.00 37.08 4.41
3665 3701 3.181476 GGAAACGGATTTGCTGCCATATT 60.181 43.478 0.00 0.00 33.58 1.28
3667 3703 2.378038 ACGGATTTGCTGCCATATTGT 58.622 42.857 0.00 0.00 0.00 2.71
3760 4085 1.039068 CTCCATGATCACGAGCTCCT 58.961 55.000 8.47 0.00 0.00 3.69
3761 4086 0.749049 TCCATGATCACGAGCTCCTG 59.251 55.000 8.47 7.30 0.00 3.86
3781 4106 3.162666 TGGTCTAGCGAGAAGGAGAAAA 58.837 45.455 0.00 0.00 31.96 2.29
3814 4139 4.310769 CGGTGGCTATAGAAAGATGAAGG 58.689 47.826 3.21 0.00 0.00 3.46
3852 4177 2.564975 CGACGTGGACGCTAACCT 59.435 61.111 0.00 0.00 44.43 3.50
3853 4178 1.800315 CGACGTGGACGCTAACCTG 60.800 63.158 0.00 0.00 44.43 4.00
3854 4179 2.048503 ACGTGGACGCTAACCTGC 60.049 61.111 0.00 0.00 44.43 4.85
3855 4180 2.048597 CGTGGACGCTAACCTGCA 60.049 61.111 0.00 0.00 0.00 4.41
3856 4181 2.380410 CGTGGACGCTAACCTGCAC 61.380 63.158 0.00 0.00 0.00 4.57
3857 4182 2.033194 GTGGACGCTAACCTGCACC 61.033 63.158 0.00 0.00 0.00 5.01
3858 4183 2.436115 GGACGCTAACCTGCACCC 60.436 66.667 0.00 0.00 0.00 4.61
3859 4184 2.663196 GACGCTAACCTGCACCCT 59.337 61.111 0.00 0.00 0.00 4.34
3860 4185 1.003718 GACGCTAACCTGCACCCTT 60.004 57.895 0.00 0.00 0.00 3.95
3861 4186 1.298859 GACGCTAACCTGCACCCTTG 61.299 60.000 0.00 0.00 0.00 3.61
3862 4187 1.003839 CGCTAACCTGCACCCTTGA 60.004 57.895 0.00 0.00 0.00 3.02
3863 4188 1.021390 CGCTAACCTGCACCCTTGAG 61.021 60.000 0.00 0.00 0.00 3.02
3864 4189 0.036875 GCTAACCTGCACCCTTGAGT 59.963 55.000 0.00 0.00 0.00 3.41
3865 4190 1.946283 GCTAACCTGCACCCTTGAGTC 60.946 57.143 0.00 0.00 0.00 3.36
3866 4191 1.347707 CTAACCTGCACCCTTGAGTCA 59.652 52.381 0.00 0.00 0.00 3.41
3867 4192 0.109342 AACCTGCACCCTTGAGTCAG 59.891 55.000 0.00 0.00 0.00 3.51
3868 4193 1.002868 CCTGCACCCTTGAGTCAGG 60.003 63.158 0.00 0.00 38.41 3.86
3869 4194 1.757306 CTGCACCCTTGAGTCAGGT 59.243 57.895 1.16 0.00 30.96 4.00
3870 4195 0.976641 CTGCACCCTTGAGTCAGGTA 59.023 55.000 3.85 0.00 30.98 3.08
3871 4196 0.685097 TGCACCCTTGAGTCAGGTAC 59.315 55.000 3.85 0.00 30.98 3.34
3872 4197 0.389948 GCACCCTTGAGTCAGGTACG 60.390 60.000 3.85 0.00 30.98 3.67
3873 4198 0.966920 CACCCTTGAGTCAGGTACGT 59.033 55.000 3.85 0.00 30.98 3.57
3874 4199 0.966920 ACCCTTGAGTCAGGTACGTG 59.033 55.000 9.30 9.30 30.96 4.49
3875 4200 1.254026 CCCTTGAGTCAGGTACGTGA 58.746 55.000 14.05 14.05 30.96 4.35
3876 4201 1.067776 CCCTTGAGTCAGGTACGTGAC 60.068 57.143 31.72 31.72 46.22 3.67
3877 4202 1.067776 CCTTGAGTCAGGTACGTGACC 60.068 57.143 33.77 26.73 46.94 4.02
3886 4211 3.123674 GTACGTGACCAGCAAGGAG 57.876 57.895 0.00 0.00 41.22 3.69
3887 4212 0.389948 GTACGTGACCAGCAAGGAGG 60.390 60.000 0.00 0.00 41.22 4.30
3888 4213 2.167398 TACGTGACCAGCAAGGAGGC 62.167 60.000 0.00 0.00 41.22 4.70
3889 4214 2.360475 GTGACCAGCAAGGAGGCC 60.360 66.667 0.00 0.00 41.22 5.19
3890 4215 4.020617 TGACCAGCAAGGAGGCCG 62.021 66.667 0.00 0.00 41.22 6.13
3913 4238 4.063967 CCCACCGAGTGCTGCGTA 62.064 66.667 0.00 0.00 31.34 4.42
3922 4247 3.370231 TGCTGCGTAGGCGTGAGA 61.370 61.111 1.76 0.00 44.10 3.27
3928 4253 1.136984 CGTAGGCGTGAGACACCTC 59.863 63.158 0.00 0.00 46.78 3.85
3929 4254 1.583495 CGTAGGCGTGAGACACCTCA 61.583 60.000 0.00 0.00 46.78 3.86
3936 4261 1.152030 TGAGACACCTCAGGGCCTT 60.152 57.895 1.32 0.00 44.01 4.35
3972 4305 5.050363 CGGACGCATAGTAATTGCTGTATTT 60.050 40.000 6.28 0.00 37.96 1.40
3978 4311 7.257722 GCATAGTAATTGCTGTATTTTGTGGT 58.742 34.615 6.28 0.00 37.14 4.16
4021 4354 8.592105 GTGCATGCCACATATATAAAATGTTT 57.408 30.769 16.68 0.00 44.06 2.83
4022 4355 9.044150 GTGCATGCCACATATATAAAATGTTTT 57.956 29.630 16.68 0.00 44.06 2.43
4023 4356 9.043079 TGCATGCCACATATATAAAATGTTTTG 57.957 29.630 16.68 1.07 35.39 2.44
4024 4357 9.044150 GCATGCCACATATATAAAATGTTTTGT 57.956 29.630 6.36 0.00 35.39 2.83
4072 4405 8.484214 AGAGCATTTAGATCACTACATAAGGA 57.516 34.615 0.00 0.00 34.30 3.36
4073 4406 8.364142 AGAGCATTTAGATCACTACATAAGGAC 58.636 37.037 0.00 0.00 34.30 3.85
4074 4407 8.256356 AGCATTTAGATCACTACATAAGGACT 57.744 34.615 0.00 0.00 0.00 3.85
4075 4408 8.147058 AGCATTTAGATCACTACATAAGGACTG 58.853 37.037 0.00 0.00 0.00 3.51
4076 4409 8.144478 GCATTTAGATCACTACATAAGGACTGA 58.856 37.037 0.00 0.00 0.00 3.41
4081 4414 8.311395 AGATCACTACATAAGGACTGAAATGA 57.689 34.615 0.00 0.00 0.00 2.57
4082 4415 8.420222 AGATCACTACATAAGGACTGAAATGAG 58.580 37.037 0.00 0.00 0.00 2.90
4083 4416 6.341316 TCACTACATAAGGACTGAAATGAGC 58.659 40.000 0.00 0.00 0.00 4.26
4084 4417 5.233050 CACTACATAAGGACTGAAATGAGCG 59.767 44.000 0.00 0.00 0.00 5.03
4085 4418 4.471904 ACATAAGGACTGAAATGAGCGA 57.528 40.909 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.588756 TCTTCAATCATGGTAGTACAACGAAC 59.411 38.462 2.06 0.00 0.00 3.95
1 2 6.693466 TCTTCAATCATGGTAGTACAACGAA 58.307 36.000 2.06 0.00 0.00 3.85
2 3 6.275494 TCTTCAATCATGGTAGTACAACGA 57.725 37.500 2.06 0.00 0.00 3.85
3 4 6.756542 TCATCTTCAATCATGGTAGTACAACG 59.243 38.462 2.06 0.00 0.00 4.10
4 5 8.492673 TTCATCTTCAATCATGGTAGTACAAC 57.507 34.615 2.06 0.00 0.00 3.32
6 7 9.987272 CTATTCATCTTCAATCATGGTAGTACA 57.013 33.333 2.06 0.00 0.00 2.90
9 10 8.932610 AGTCTATTCATCTTCAATCATGGTAGT 58.067 33.333 0.00 0.00 0.00 2.73
10 11 9.205719 CAGTCTATTCATCTTCAATCATGGTAG 57.794 37.037 0.00 0.00 0.00 3.18
11 12 8.927411 TCAGTCTATTCATCTTCAATCATGGTA 58.073 33.333 0.00 0.00 0.00 3.25
12 13 7.799081 TCAGTCTATTCATCTTCAATCATGGT 58.201 34.615 0.00 0.00 0.00 3.55
13 14 8.672823 TTCAGTCTATTCATCTTCAATCATGG 57.327 34.615 0.00 0.00 0.00 3.66
15 16 9.902684 ACTTTCAGTCTATTCATCTTCAATCAT 57.097 29.630 0.00 0.00 0.00 2.45
16 17 9.730705 AACTTTCAGTCTATTCATCTTCAATCA 57.269 29.630 0.00 0.00 0.00 2.57
21 22 9.833182 GGAAAAACTTTCAGTCTATTCATCTTC 57.167 33.333 1.88 0.00 0.00 2.87
22 23 9.354673 TGGAAAAACTTTCAGTCTATTCATCTT 57.645 29.630 1.88 0.00 0.00 2.40
23 24 8.924511 TGGAAAAACTTTCAGTCTATTCATCT 57.075 30.769 1.88 0.00 0.00 2.90
24 25 7.752686 GCTGGAAAAACTTTCAGTCTATTCATC 59.247 37.037 1.88 0.00 0.00 2.92
25 26 7.231317 TGCTGGAAAAACTTTCAGTCTATTCAT 59.769 33.333 1.88 0.00 0.00 2.57
26 27 6.545666 TGCTGGAAAAACTTTCAGTCTATTCA 59.454 34.615 1.88 0.00 0.00 2.57
27 28 6.970484 TGCTGGAAAAACTTTCAGTCTATTC 58.030 36.000 1.88 0.00 0.00 1.75
28 29 6.959639 TGCTGGAAAAACTTTCAGTCTATT 57.040 33.333 1.88 0.00 0.00 1.73
29 30 6.959639 TTGCTGGAAAAACTTTCAGTCTAT 57.040 33.333 1.88 0.00 0.00 1.98
30 31 6.767524 TTTGCTGGAAAAACTTTCAGTCTA 57.232 33.333 0.00 0.00 0.00 2.59
31 32 5.659440 TTTGCTGGAAAAACTTTCAGTCT 57.341 34.783 0.00 0.00 0.00 3.24
32 33 6.720012 TTTTTGCTGGAAAAACTTTCAGTC 57.280 33.333 14.60 0.00 38.38 3.51
56 57 5.447818 CCGCATCGCTAAGATTTCTCTTTTT 60.448 40.000 0.00 0.00 41.91 1.94
57 58 4.034510 CCGCATCGCTAAGATTTCTCTTTT 59.965 41.667 0.00 0.00 41.91 2.27
58 59 3.557595 CCGCATCGCTAAGATTTCTCTTT 59.442 43.478 0.00 0.00 41.91 2.52
59 60 3.126831 CCGCATCGCTAAGATTTCTCTT 58.873 45.455 0.00 0.00 44.06 2.85
60 61 2.546795 CCCGCATCGCTAAGATTTCTCT 60.547 50.000 0.00 0.00 37.52 3.10
61 62 1.795286 CCCGCATCGCTAAGATTTCTC 59.205 52.381 0.00 0.00 37.52 2.87
62 63 1.871080 CCCGCATCGCTAAGATTTCT 58.129 50.000 0.00 0.00 37.52 2.52
63 64 0.235926 GCCCGCATCGCTAAGATTTC 59.764 55.000 0.00 0.00 37.52 2.17
64 65 1.166531 GGCCCGCATCGCTAAGATTT 61.167 55.000 0.00 0.00 37.52 2.17
65 66 1.598130 GGCCCGCATCGCTAAGATT 60.598 57.895 0.00 0.00 37.52 2.40
66 67 2.031163 GGCCCGCATCGCTAAGAT 59.969 61.111 0.00 0.00 41.01 2.40
67 68 2.923426 CTTGGCCCGCATCGCTAAGA 62.923 60.000 0.00 0.00 44.89 2.10
68 69 2.513666 TTGGCCCGCATCGCTAAG 60.514 61.111 0.00 0.00 0.00 2.18
69 70 2.513666 CTTGGCCCGCATCGCTAA 60.514 61.111 0.00 0.00 0.00 3.09
70 71 4.545706 CCTTGGCCCGCATCGCTA 62.546 66.667 0.00 0.00 0.00 4.26
74 75 4.802051 TCTGCCTTGGCCCGCATC 62.802 66.667 9.35 0.00 33.78 3.91
75 76 4.809496 CTCTGCCTTGGCCCGCAT 62.809 66.667 9.35 0.00 33.78 4.73
78 79 4.785453 GACCTCTGCCTTGGCCCG 62.785 72.222 9.35 0.59 0.00 6.13
79 80 4.432741 GGACCTCTGCCTTGGCCC 62.433 72.222 9.35 0.00 0.00 5.80
80 81 3.635268 CTGGACCTCTGCCTTGGCC 62.635 68.421 9.35 0.00 0.00 5.36
81 82 2.045536 CTGGACCTCTGCCTTGGC 60.046 66.667 4.43 4.43 0.00 4.52
82 83 2.045536 GCTGGACCTCTGCCTTGG 60.046 66.667 0.00 0.00 34.72 3.61
83 84 1.376942 CAGCTGGACCTCTGCCTTG 60.377 63.158 5.57 0.00 40.63 3.61
84 85 1.537397 TCAGCTGGACCTCTGCCTT 60.537 57.895 15.13 0.00 40.63 4.35
85 86 1.988956 CTCAGCTGGACCTCTGCCT 60.989 63.158 15.13 0.00 40.63 4.75
86 87 2.583520 CTCAGCTGGACCTCTGCC 59.416 66.667 15.13 0.00 40.63 4.85
87 88 2.125188 GCTCAGCTGGACCTCTGC 60.125 66.667 15.13 3.80 40.14 4.26
88 89 0.673022 GTTGCTCAGCTGGACCTCTG 60.673 60.000 15.13 7.70 0.00 3.35
89 90 1.676384 GTTGCTCAGCTGGACCTCT 59.324 57.895 15.13 0.00 0.00 3.69
90 91 1.376553 GGTTGCTCAGCTGGACCTC 60.377 63.158 15.13 2.36 0.00 3.85
91 92 0.545309 TAGGTTGCTCAGCTGGACCT 60.545 55.000 24.77 24.77 39.15 3.85
92 93 0.391793 GTAGGTTGCTCAGCTGGACC 60.392 60.000 15.13 16.07 34.13 4.46
93 94 0.737715 CGTAGGTTGCTCAGCTGGAC 60.738 60.000 15.13 6.92 34.13 4.02
94 95 0.898326 TCGTAGGTTGCTCAGCTGGA 60.898 55.000 15.13 0.00 34.13 3.86
95 96 0.176680 ATCGTAGGTTGCTCAGCTGG 59.823 55.000 15.13 5.82 34.13 4.85
96 97 1.134995 TGATCGTAGGTTGCTCAGCTG 60.135 52.381 7.63 7.63 34.13 4.24
97 98 1.186200 TGATCGTAGGTTGCTCAGCT 58.814 50.000 0.00 0.00 36.98 4.24
98 99 1.661112 GTTGATCGTAGGTTGCTCAGC 59.339 52.381 0.00 0.00 0.00 4.26
99 100 2.959516 TGTTGATCGTAGGTTGCTCAG 58.040 47.619 0.00 0.00 0.00 3.35
100 101 3.064207 GTTGTTGATCGTAGGTTGCTCA 58.936 45.455 0.00 0.00 0.00 4.26
101 102 2.092211 CGTTGTTGATCGTAGGTTGCTC 59.908 50.000 0.00 0.00 0.00 4.26
102 103 2.066262 CGTTGTTGATCGTAGGTTGCT 58.934 47.619 0.00 0.00 0.00 3.91
103 104 1.796459 ACGTTGTTGATCGTAGGTTGC 59.204 47.619 0.00 0.00 38.52 4.17
104 105 3.058520 CGTACGTTGTTGATCGTAGGTTG 59.941 47.826 7.22 0.00 41.90 3.77
105 106 3.236816 CGTACGTTGTTGATCGTAGGTT 58.763 45.455 7.22 0.00 41.90 3.50
106 107 2.414559 CCGTACGTTGTTGATCGTAGGT 60.415 50.000 15.21 0.00 42.66 3.08
107 108 2.159531 TCCGTACGTTGTTGATCGTAGG 60.160 50.000 15.21 9.40 41.90 3.18
108 109 3.121559 TCCGTACGTTGTTGATCGTAG 57.878 47.619 15.21 0.00 41.90 3.51
109 110 3.550950 TTCCGTACGTTGTTGATCGTA 57.449 42.857 15.21 0.00 40.70 3.43
110 111 2.420628 TTCCGTACGTTGTTGATCGT 57.579 45.000 15.21 0.00 42.82 3.73
111 112 3.774282 TTTTCCGTACGTTGTTGATCG 57.226 42.857 15.21 0.00 0.00 3.69
112 113 5.272167 TCATTTTCCGTACGTTGTTGATC 57.728 39.130 15.21 0.00 0.00 2.92
113 114 5.676532 TTCATTTTCCGTACGTTGTTGAT 57.323 34.783 15.21 0.00 0.00 2.57
114 115 5.236695 TGATTCATTTTCCGTACGTTGTTGA 59.763 36.000 15.21 7.67 0.00 3.18
115 116 5.444983 TGATTCATTTTCCGTACGTTGTTG 58.555 37.500 15.21 5.43 0.00 3.33
116 117 5.334569 CCTGATTCATTTTCCGTACGTTGTT 60.335 40.000 15.21 0.00 0.00 2.83
117 118 4.153475 CCTGATTCATTTTCCGTACGTTGT 59.847 41.667 15.21 0.00 0.00 3.32
118 119 4.153475 ACCTGATTCATTTTCCGTACGTTG 59.847 41.667 15.21 0.00 0.00 4.10
119 120 4.320870 ACCTGATTCATTTTCCGTACGTT 58.679 39.130 15.21 0.00 0.00 3.99
120 121 3.930848 GACCTGATTCATTTTCCGTACGT 59.069 43.478 15.21 0.00 0.00 3.57
121 122 3.000078 CGACCTGATTCATTTTCCGTACG 60.000 47.826 8.69 8.69 0.00 3.67
122 123 3.308866 CCGACCTGATTCATTTTCCGTAC 59.691 47.826 0.00 0.00 0.00 3.67
123 124 3.196039 TCCGACCTGATTCATTTTCCGTA 59.804 43.478 0.00 0.00 0.00 4.02
124 125 2.027561 TCCGACCTGATTCATTTTCCGT 60.028 45.455 0.00 0.00 0.00 4.69
125 126 2.351726 GTCCGACCTGATTCATTTTCCG 59.648 50.000 0.00 0.00 0.00 4.30
126 127 2.351726 CGTCCGACCTGATTCATTTTCC 59.648 50.000 0.00 0.00 0.00 3.13
127 128 2.351726 CCGTCCGACCTGATTCATTTTC 59.648 50.000 0.00 0.00 0.00 2.29
128 129 2.027561 TCCGTCCGACCTGATTCATTTT 60.028 45.455 0.00 0.00 0.00 1.82
129 130 1.553248 TCCGTCCGACCTGATTCATTT 59.447 47.619 0.00 0.00 0.00 2.32
130 131 1.134788 GTCCGTCCGACCTGATTCATT 60.135 52.381 0.00 0.00 35.23 2.57
131 132 0.460311 GTCCGTCCGACCTGATTCAT 59.540 55.000 0.00 0.00 35.23 2.57
132 133 1.888018 GTCCGTCCGACCTGATTCA 59.112 57.895 0.00 0.00 35.23 2.57
133 134 1.226603 CGTCCGTCCGACCTGATTC 60.227 63.158 0.00 0.00 38.36 2.52
134 135 2.707849 CCGTCCGTCCGACCTGATT 61.708 63.158 0.00 0.00 38.36 2.57
135 136 3.138798 CCGTCCGTCCGACCTGAT 61.139 66.667 0.00 0.00 38.36 2.90
136 137 4.334118 TCCGTCCGTCCGACCTGA 62.334 66.667 0.00 0.00 38.36 3.86
137 138 4.112341 GTCCGTCCGTCCGACCTG 62.112 72.222 0.00 0.00 38.36 4.00
140 141 3.726517 TTCGTCCGTCCGTCCGAC 61.727 66.667 0.00 0.00 38.21 4.79
141 142 3.726517 GTTCGTCCGTCCGTCCGA 61.727 66.667 0.00 0.00 0.00 4.55
142 143 3.332493 ATGTTCGTCCGTCCGTCCG 62.332 63.158 0.00 0.00 0.00 4.79
143 144 1.804326 CATGTTCGTCCGTCCGTCC 60.804 63.158 0.00 0.00 0.00 4.79
144 145 2.442188 GCATGTTCGTCCGTCCGTC 61.442 63.158 0.00 0.00 0.00 4.79
145 146 1.588824 TAGCATGTTCGTCCGTCCGT 61.589 55.000 0.00 0.00 0.00 4.69
146 147 0.248907 ATAGCATGTTCGTCCGTCCG 60.249 55.000 0.00 0.00 0.00 4.79
147 148 1.935933 AATAGCATGTTCGTCCGTCC 58.064 50.000 0.00 0.00 0.00 4.79
148 149 5.919141 AGTATTAATAGCATGTTCGTCCGTC 59.081 40.000 0.00 0.00 0.00 4.79
149 150 5.839621 AGTATTAATAGCATGTTCGTCCGT 58.160 37.500 0.00 0.00 0.00 4.69
150 151 6.307318 GGTAGTATTAATAGCATGTTCGTCCG 59.693 42.308 0.00 0.00 0.00 4.79
151 152 7.376615 AGGTAGTATTAATAGCATGTTCGTCC 58.623 38.462 0.00 0.00 0.00 4.79
152 153 7.270793 CGAGGTAGTATTAATAGCATGTTCGTC 59.729 40.741 0.00 0.00 0.00 4.20
153 154 7.082602 CGAGGTAGTATTAATAGCATGTTCGT 58.917 38.462 0.00 0.00 0.00 3.85
154 155 7.082602 ACGAGGTAGTATTAATAGCATGTTCG 58.917 38.462 0.00 4.91 0.00 3.95
155 156 8.813643 AACGAGGTAGTATTAATAGCATGTTC 57.186 34.615 0.00 0.00 0.00 3.18
157 158 9.688592 GTAAACGAGGTAGTATTAATAGCATGT 57.311 33.333 0.00 0.00 0.00 3.21
158 159 9.687210 TGTAAACGAGGTAGTATTAATAGCATG 57.313 33.333 0.00 0.00 0.00 4.06
177 178 9.546098 CGTATAGACAAAATCGTAATGTAAACG 57.454 33.333 0.00 0.00 41.64 3.60
182 183 8.688184 CGATTCGTATAGACAAAATCGTAATGT 58.312 33.333 19.18 0.00 41.44 2.71
188 189 9.551200 CTTTTACGATTCGTATAGACAAAATCG 57.449 33.333 22.95 22.95 46.30 3.34
189 190 9.354544 GCTTTTACGATTCGTATAGACAAAATC 57.645 33.333 18.78 9.44 41.97 2.17
190 191 8.054236 CGCTTTTACGATTCGTATAGACAAAAT 58.946 33.333 18.78 0.00 41.97 1.82
191 192 7.062138 ACGCTTTTACGATTCGTATAGACAAAA 59.938 33.333 18.78 14.96 41.97 2.44
192 193 6.527722 ACGCTTTTACGATTCGTATAGACAAA 59.472 34.615 18.78 14.12 41.97 2.83
193 194 6.029607 ACGCTTTTACGATTCGTATAGACAA 58.970 36.000 18.78 7.81 41.97 3.18
194 195 5.572211 ACGCTTTTACGATTCGTATAGACA 58.428 37.500 18.78 1.80 41.97 3.41
195 196 7.772721 ATACGCTTTTACGATTCGTATAGAC 57.227 36.000 18.78 13.20 42.32 2.59
196 197 9.318041 GTAATACGCTTTTACGATTCGTATAGA 57.682 33.333 18.78 2.53 43.00 1.98
208 209 4.032104 CACCCAGTCGTAATACGCTTTTAC 59.968 45.833 8.09 0.70 42.21 2.01
209 210 4.175516 CACCCAGTCGTAATACGCTTTTA 58.824 43.478 8.09 0.00 42.21 1.52
210 211 2.997986 CACCCAGTCGTAATACGCTTTT 59.002 45.455 8.09 0.00 42.21 2.27
211 212 2.613691 CACCCAGTCGTAATACGCTTT 58.386 47.619 8.09 0.00 42.21 3.51
212 213 1.134907 CCACCCAGTCGTAATACGCTT 60.135 52.381 8.09 0.00 42.21 4.68
213 214 0.458669 CCACCCAGTCGTAATACGCT 59.541 55.000 8.09 5.97 42.21 5.07
214 215 0.457035 TCCACCCAGTCGTAATACGC 59.543 55.000 8.09 3.66 42.21 4.42
215 216 2.805845 CTTCCACCCAGTCGTAATACG 58.194 52.381 6.45 6.45 44.19 3.06
216 217 2.547826 GCTTCCACCCAGTCGTAATAC 58.452 52.381 0.00 0.00 0.00 1.89
217 218 1.135527 CGCTTCCACCCAGTCGTAATA 59.864 52.381 0.00 0.00 0.00 0.98
218 219 0.108329 CGCTTCCACCCAGTCGTAAT 60.108 55.000 0.00 0.00 0.00 1.89
219 220 1.290955 CGCTTCCACCCAGTCGTAA 59.709 57.895 0.00 0.00 0.00 3.18
220 221 0.608856 TACGCTTCCACCCAGTCGTA 60.609 55.000 0.00 0.00 0.00 3.43
221 222 1.255667 ATACGCTTCCACCCAGTCGT 61.256 55.000 0.00 0.00 0.00 4.34
222 223 0.108329 AATACGCTTCCACCCAGTCG 60.108 55.000 0.00 0.00 0.00 4.18
223 224 1.338769 ACAATACGCTTCCACCCAGTC 60.339 52.381 0.00 0.00 0.00 3.51
224 225 0.690762 ACAATACGCTTCCACCCAGT 59.309 50.000 0.00 0.00 0.00 4.00
225 226 1.086696 CACAATACGCTTCCACCCAG 58.913 55.000 0.00 0.00 0.00 4.45
226 227 0.687920 TCACAATACGCTTCCACCCA 59.312 50.000 0.00 0.00 0.00 4.51
227 228 1.084289 GTCACAATACGCTTCCACCC 58.916 55.000 0.00 0.00 0.00 4.61
228 229 0.719465 CGTCACAATACGCTTCCACC 59.281 55.000 0.00 0.00 35.87 4.61
229 230 0.719465 CCGTCACAATACGCTTCCAC 59.281 55.000 0.00 0.00 41.51 4.02
230 231 0.319083 ACCGTCACAATACGCTTCCA 59.681 50.000 0.00 0.00 41.51 3.53
231 232 0.719465 CACCGTCACAATACGCTTCC 59.281 55.000 0.00 0.00 41.51 3.46
232 233 1.705256 TCACCGTCACAATACGCTTC 58.295 50.000 0.00 0.00 41.51 3.86
233 234 1.796459 GTTCACCGTCACAATACGCTT 59.204 47.619 0.00 0.00 41.51 4.68
234 235 1.425412 GTTCACCGTCACAATACGCT 58.575 50.000 0.00 0.00 41.51 5.07
235 236 0.441145 GGTTCACCGTCACAATACGC 59.559 55.000 0.00 0.00 41.51 4.42
236 237 1.073177 GGGTTCACCGTCACAATACG 58.927 55.000 0.00 0.00 42.49 3.06
237 238 1.802365 GTGGGTTCACCGTCACAATAC 59.198 52.381 1.63 0.00 44.64 1.89
238 239 1.605968 CGTGGGTTCACCGTCACAATA 60.606 52.381 6.29 0.00 44.64 1.90
239 240 0.882927 CGTGGGTTCACCGTCACAAT 60.883 55.000 6.29 0.00 44.64 2.71
240 241 1.521906 CGTGGGTTCACCGTCACAA 60.522 57.895 6.29 0.00 44.64 3.33
241 242 2.107343 CGTGGGTTCACCGTCACA 59.893 61.111 6.29 0.00 44.64 3.58
242 243 2.663852 CCGTGGGTTCACCGTCAC 60.664 66.667 0.00 0.00 44.64 3.67
243 244 2.838693 TCCGTGGGTTCACCGTCA 60.839 61.111 0.00 0.00 44.64 4.35
244 245 2.048503 CTCCGTGGGTTCACCGTC 60.049 66.667 0.00 0.00 44.64 4.79
245 246 2.841044 ACTCCGTGGGTTCACCGT 60.841 61.111 0.00 0.00 44.64 4.83
246 247 2.048503 GACTCCGTGGGTTCACCG 60.049 66.667 0.00 0.00 44.64 4.94
247 248 0.036306 ATTGACTCCGTGGGTTCACC 59.964 55.000 0.00 0.00 40.65 4.02
248 249 1.439679 GATTGACTCCGTGGGTTCAC 58.560 55.000 0.00 0.00 40.36 3.18
249 250 0.323629 GGATTGACTCCGTGGGTTCA 59.676 55.000 0.00 0.00 33.29 3.18
250 251 3.154589 GGATTGACTCCGTGGGTTC 57.845 57.895 0.00 0.00 33.29 3.62
258 259 6.619801 AATAATAAAGCACGGATTGACTCC 57.380 37.500 0.00 0.00 41.07 3.85
259 260 7.095187 CCCTAATAATAAAGCACGGATTGACTC 60.095 40.741 0.00 0.00 0.00 3.36
260 261 6.710744 CCCTAATAATAAAGCACGGATTGACT 59.289 38.462 0.00 0.00 0.00 3.41
261 262 6.708949 TCCCTAATAATAAAGCACGGATTGAC 59.291 38.462 0.00 0.00 0.00 3.18
262 263 6.833041 TCCCTAATAATAAAGCACGGATTGA 58.167 36.000 0.00 0.00 0.00 2.57
263 264 7.504924 TTCCCTAATAATAAAGCACGGATTG 57.495 36.000 0.00 0.00 0.00 2.67
264 265 7.996644 TCTTTCCCTAATAATAAAGCACGGATT 59.003 33.333 0.00 0.00 0.00 3.01
265 266 7.514721 TCTTTCCCTAATAATAAAGCACGGAT 58.485 34.615 0.00 0.00 0.00 4.18
266 267 6.891388 TCTTTCCCTAATAATAAAGCACGGA 58.109 36.000 0.00 0.00 0.00 4.69
267 268 7.745620 ATCTTTCCCTAATAATAAAGCACGG 57.254 36.000 0.00 0.00 0.00 4.94
874 876 7.921214 TGAAGCGAATTGGTTAGAGTATTAGAG 59.079 37.037 0.00 0.00 38.70 2.43
1074 1076 1.064389 GGTGGAAGCCTTAGCCTCATT 60.064 52.381 0.00 0.00 41.25 2.57
1539 1541 3.571571 TCCAAGTAACATTCTCGTCACG 58.428 45.455 0.00 0.00 0.00 4.35
1630 1632 0.185901 AGGCCCAGCAGAAAGAACAA 59.814 50.000 0.00 0.00 0.00 2.83
1838 1843 2.029649 AGCACATCAACAAAGTCCATGC 60.030 45.455 0.00 0.00 0.00 4.06
1863 1868 1.681166 CCATTCTCACCAGGCAAGGAG 60.681 57.143 2.81 0.00 0.00 3.69
1989 1994 2.121291 TGGTGACAGAGCACAAAACA 57.879 45.000 0.00 0.00 40.52 2.83
2076 2084 5.301805 ACAAAATAACTTCTTGGTGGTCAGG 59.698 40.000 0.00 0.00 0.00 3.86
2234 2251 8.048534 AGTATTACAAGCGAGAACAACTACTA 57.951 34.615 0.00 0.00 0.00 1.82
2308 2325 9.999660 TTTGTAATACCAAACATCTACAGTACA 57.000 29.630 0.00 0.00 29.67 2.90
2311 2328 9.733556 TCATTTGTAATACCAAACATCTACAGT 57.266 29.630 0.00 0.00 37.16 3.55
2353 2370 9.334693 GTTCATATGCACTTTCTCTTTTAACAG 57.665 33.333 0.00 0.00 0.00 3.16
2354 2371 8.845227 TGTTCATATGCACTTTCTCTTTTAACA 58.155 29.630 7.03 0.75 0.00 2.41
2355 2372 9.846248 ATGTTCATATGCACTTTCTCTTTTAAC 57.154 29.630 7.03 0.00 0.00 2.01
2428 2445 1.923204 GATGAAGTGTCAGTAGCAGCG 59.077 52.381 0.00 0.00 37.14 5.18
2623 2640 2.523016 GGGATCAGGAATGGCCCC 59.477 66.667 0.00 0.00 37.37 5.80
2629 2646 1.330655 ACTCGTGCGGGATCAGGAAT 61.331 55.000 0.00 0.00 31.51 3.01
2665 2682 1.800805 GGATGTCGTAGCCCATGATG 58.199 55.000 0.00 0.00 0.00 3.07
3039 3056 1.257750 ACAGGAGCCGTACATCTGCA 61.258 55.000 5.84 0.00 0.00 4.41
3115 3133 9.952030 TGTATGTATTCTTTCACCATTCTTGTA 57.048 29.630 0.00 0.00 0.00 2.41
3167 3200 8.561212 GTGTTCTACGTTGATATATCTCAGAGT 58.439 37.037 13.79 8.96 0.00 3.24
3168 3201 8.942669 GTGTTCTACGTTGATATATCTCAGAG 57.057 38.462 13.79 5.39 0.00 3.35
3186 3221 8.397906 GGAAATGATTCAATTCATCGTGTTCTA 58.602 33.333 14.69 0.00 35.29 2.10
3216 3251 4.464069 ACAGAGAGGAGACAAGTAATGC 57.536 45.455 0.00 0.00 0.00 3.56
3221 3256 3.244044 GCAAGAACAGAGAGGAGACAAGT 60.244 47.826 0.00 0.00 0.00 3.16
3222 3257 3.324993 GCAAGAACAGAGAGGAGACAAG 58.675 50.000 0.00 0.00 0.00 3.16
3223 3258 2.288457 CGCAAGAACAGAGAGGAGACAA 60.288 50.000 0.00 0.00 43.02 3.18
3237 3272 1.804151 GCACACCTATGAACGCAAGAA 59.196 47.619 0.00 0.00 43.62 2.52
3251 3287 6.058183 ACAGGATCTAATTGATTAGCACACC 58.942 40.000 5.98 6.57 39.60 4.16
3256 3292 7.040892 TGCATGAACAGGATCTAATTGATTAGC 60.041 37.037 0.00 0.00 39.60 3.09
3257 3293 8.387190 TGCATGAACAGGATCTAATTGATTAG 57.613 34.615 0.00 4.70 40.79 1.73
3258 3294 8.789762 CATGCATGAACAGGATCTAATTGATTA 58.210 33.333 22.59 0.00 35.14 1.75
3259 3295 7.504574 TCATGCATGAACAGGATCTAATTGATT 59.495 33.333 26.87 0.00 32.57 2.57
3260 3296 7.002276 TCATGCATGAACAGGATCTAATTGAT 58.998 34.615 26.87 0.00 34.11 2.57
3261 3297 6.358991 TCATGCATGAACAGGATCTAATTGA 58.641 36.000 26.87 0.00 33.08 2.57
3262 3298 6.628919 TCATGCATGAACAGGATCTAATTG 57.371 37.500 26.87 0.00 33.08 2.32
3309 3345 2.028190 CTCCGCCCGTGCATCTAG 59.972 66.667 0.00 0.00 37.32 2.43
3310 3346 4.221422 GCTCCGCCCGTGCATCTA 62.221 66.667 0.00 0.00 37.32 1.98
3313 3349 4.227134 CTAGCTCCGCCCGTGCAT 62.227 66.667 0.00 0.00 37.32 3.96
3315 3351 3.917760 ATCTAGCTCCGCCCGTGC 61.918 66.667 0.00 0.00 0.00 5.34
3316 3352 2.028190 CATCTAGCTCCGCCCGTG 59.972 66.667 0.00 0.00 0.00 4.94
3317 3353 3.917760 GCATCTAGCTCCGCCCGT 61.918 66.667 0.00 0.00 41.15 5.28
3318 3354 3.855352 CTGCATCTAGCTCCGCCCG 62.855 68.421 0.00 0.00 45.94 6.13
3319 3355 2.030262 CTGCATCTAGCTCCGCCC 59.970 66.667 0.00 0.00 45.94 6.13
3320 3356 1.300542 GTCTGCATCTAGCTCCGCC 60.301 63.158 0.00 0.00 45.94 6.13
3321 3357 0.955178 TAGTCTGCATCTAGCTCCGC 59.045 55.000 0.00 0.00 45.94 5.54
3322 3358 1.069568 CGTAGTCTGCATCTAGCTCCG 60.070 57.143 0.00 0.00 45.94 4.63
3323 3359 1.335506 GCGTAGTCTGCATCTAGCTCC 60.336 57.143 0.00 0.00 45.94 4.70
3324 3360 1.335506 GGCGTAGTCTGCATCTAGCTC 60.336 57.143 0.00 0.00 45.94 4.09
3325 3361 0.671251 GGCGTAGTCTGCATCTAGCT 59.329 55.000 0.00 0.00 45.94 3.32
3326 3362 0.671251 AGGCGTAGTCTGCATCTAGC 59.329 55.000 0.00 0.24 46.61 3.42
3343 3379 1.421268 TCAACATAGCATAGCCCCAGG 59.579 52.381 0.00 0.00 0.00 4.45
3344 3380 2.105477 ACTCAACATAGCATAGCCCCAG 59.895 50.000 0.00 0.00 0.00 4.45
3345 3381 2.126882 ACTCAACATAGCATAGCCCCA 58.873 47.619 0.00 0.00 0.00 4.96
3346 3382 2.104792 TCACTCAACATAGCATAGCCCC 59.895 50.000 0.00 0.00 0.00 5.80
3347 3383 3.475566 TCACTCAACATAGCATAGCCC 57.524 47.619 0.00 0.00 0.00 5.19
3348 3384 6.708054 ACTTTATCACTCAACATAGCATAGCC 59.292 38.462 0.00 0.00 0.00 3.93
3349 3385 7.721286 ACTTTATCACTCAACATAGCATAGC 57.279 36.000 0.00 0.00 0.00 2.97
3350 3386 9.539825 AGAACTTTATCACTCAACATAGCATAG 57.460 33.333 0.00 0.00 0.00 2.23
3353 3389 9.317936 CATAGAACTTTATCACTCAACATAGCA 57.682 33.333 0.00 0.00 0.00 3.49
3354 3390 9.534565 TCATAGAACTTTATCACTCAACATAGC 57.465 33.333 0.00 0.00 0.00 2.97
3369 3405 9.578439 GCAAAGCATAGAAAATCATAGAACTTT 57.422 29.630 0.00 0.00 0.00 2.66
3370 3406 8.742777 TGCAAAGCATAGAAAATCATAGAACTT 58.257 29.630 0.00 0.00 31.71 2.66
3371 3407 8.284945 TGCAAAGCATAGAAAATCATAGAACT 57.715 30.769 0.00 0.00 31.71 3.01
3388 3424 7.710044 TCTTTTGTAATTTCTTCATGCAAAGCA 59.290 29.630 0.00 0.00 44.86 3.91
3389 3425 8.075593 TCTTTTGTAATTTCTTCATGCAAAGC 57.924 30.769 0.00 0.00 0.00 3.51
3391 3427 9.598517 ACTTCTTTTGTAATTTCTTCATGCAAA 57.401 25.926 0.00 0.00 0.00 3.68
3392 3428 9.598517 AACTTCTTTTGTAATTTCTTCATGCAA 57.401 25.926 0.00 0.00 0.00 4.08
3393 3429 9.033481 CAACTTCTTTTGTAATTTCTTCATGCA 57.967 29.630 0.00 0.00 0.00 3.96
3394 3430 9.034544 ACAACTTCTTTTGTAATTTCTTCATGC 57.965 29.630 0.00 0.00 37.96 4.06
3403 3439 9.104965 GGCCTAAAAACAACTTCTTTTGTAATT 57.895 29.630 0.00 0.00 38.82 1.40
3404 3440 8.482943 AGGCCTAAAAACAACTTCTTTTGTAAT 58.517 29.630 1.29 0.00 38.82 1.89
3405 3441 7.762159 CAGGCCTAAAAACAACTTCTTTTGTAA 59.238 33.333 3.98 0.00 38.82 2.41
3406 3442 7.262048 CAGGCCTAAAAACAACTTCTTTTGTA 58.738 34.615 3.98 0.00 38.82 2.41
3407 3443 6.106003 CAGGCCTAAAAACAACTTCTTTTGT 58.894 36.000 3.98 0.00 41.62 2.83
3408 3444 5.523552 CCAGGCCTAAAAACAACTTCTTTTG 59.476 40.000 3.98 0.00 0.00 2.44
3409 3445 5.396324 CCCAGGCCTAAAAACAACTTCTTTT 60.396 40.000 3.98 0.00 0.00 2.27
3410 3446 4.100963 CCCAGGCCTAAAAACAACTTCTTT 59.899 41.667 3.98 0.00 0.00 2.52
3411 3447 3.641436 CCCAGGCCTAAAAACAACTTCTT 59.359 43.478 3.98 0.00 0.00 2.52
3412 3448 3.230976 CCCAGGCCTAAAAACAACTTCT 58.769 45.455 3.98 0.00 0.00 2.85
3413 3449 2.299013 CCCCAGGCCTAAAAACAACTTC 59.701 50.000 3.98 0.00 0.00 3.01
3414 3450 2.325484 CCCCAGGCCTAAAAACAACTT 58.675 47.619 3.98 0.00 0.00 2.66
3415 3451 2.009681 CCCCAGGCCTAAAAACAACT 57.990 50.000 3.98 0.00 0.00 3.16
3416 3452 0.320374 GCCCCAGGCCTAAAAACAAC 59.680 55.000 3.98 0.00 44.06 3.32
3417 3453 2.753319 GCCCCAGGCCTAAAAACAA 58.247 52.632 3.98 0.00 44.06 2.83
3418 3454 4.531351 GCCCCAGGCCTAAAAACA 57.469 55.556 3.98 0.00 44.06 2.83
3460 3496 1.066303 CATCTAGTCAGTGGCGGAGAC 59.934 57.143 4.74 0.00 0.00 3.36
3461 3497 1.393603 CATCTAGTCAGTGGCGGAGA 58.606 55.000 5.06 5.06 0.00 3.71
3462 3498 0.387202 CCATCTAGTCAGTGGCGGAG 59.613 60.000 0.00 0.00 0.00 4.63
3463 3499 0.033503 TCCATCTAGTCAGTGGCGGA 60.034 55.000 0.00 0.00 33.01 5.54
3464 3500 1.043816 ATCCATCTAGTCAGTGGCGG 58.956 55.000 0.00 0.00 33.01 6.13
3465 3501 1.871408 GCATCCATCTAGTCAGTGGCG 60.871 57.143 0.00 0.00 33.01 5.69
3466 3502 1.139654 TGCATCCATCTAGTCAGTGGC 59.860 52.381 0.00 0.00 33.01 5.01
3467 3503 3.400255 CATGCATCCATCTAGTCAGTGG 58.600 50.000 0.00 0.00 0.00 4.00
3468 3504 3.181457 ACCATGCATCCATCTAGTCAGTG 60.181 47.826 0.00 0.00 0.00 3.66
3469 3505 3.044156 ACCATGCATCCATCTAGTCAGT 58.956 45.455 0.00 0.00 0.00 3.41
3470 3506 3.181457 ACACCATGCATCCATCTAGTCAG 60.181 47.826 0.00 0.00 0.00 3.51
3471 3507 2.773661 ACACCATGCATCCATCTAGTCA 59.226 45.455 0.00 0.00 0.00 3.41
3472 3508 3.482156 ACACCATGCATCCATCTAGTC 57.518 47.619 0.00 0.00 0.00 2.59
3473 3509 3.969976 AGTACACCATGCATCCATCTAGT 59.030 43.478 0.00 0.00 0.00 2.57
3474 3510 4.039609 TGAGTACACCATGCATCCATCTAG 59.960 45.833 0.00 0.00 0.00 2.43
3475 3511 3.966665 TGAGTACACCATGCATCCATCTA 59.033 43.478 0.00 0.00 0.00 1.98
3476 3512 2.773661 TGAGTACACCATGCATCCATCT 59.226 45.455 0.00 0.00 0.00 2.90
3477 3513 3.198409 TGAGTACACCATGCATCCATC 57.802 47.619 0.00 0.00 0.00 3.51
3478 3514 3.054139 AGTTGAGTACACCATGCATCCAT 60.054 43.478 0.00 0.00 0.00 3.41
3479 3515 2.305635 AGTTGAGTACACCATGCATCCA 59.694 45.455 0.00 0.00 0.00 3.41
3480 3516 2.991250 AGTTGAGTACACCATGCATCC 58.009 47.619 0.00 0.00 0.00 3.51
3481 3517 5.817296 TCAATAGTTGAGTACACCATGCATC 59.183 40.000 0.00 0.00 34.08 3.91
3482 3518 5.744171 TCAATAGTTGAGTACACCATGCAT 58.256 37.500 0.00 0.00 34.08 3.96
3483 3519 5.159273 TCAATAGTTGAGTACACCATGCA 57.841 39.130 0.00 0.00 34.08 3.96
3507 3543 5.453198 CGCCACATGCCCACATATATATCTA 60.453 44.000 0.00 0.00 33.67 1.98
3508 3544 4.684214 CGCCACATGCCCACATATATATCT 60.684 45.833 0.00 0.00 33.67 1.98
3509 3545 3.561310 CGCCACATGCCCACATATATATC 59.439 47.826 0.00 0.00 33.67 1.63
3510 3546 3.544684 CGCCACATGCCCACATATATAT 58.455 45.455 0.00 0.00 33.67 0.86
3511 3547 2.355615 CCGCCACATGCCCACATATATA 60.356 50.000 0.00 0.00 33.67 0.86
3512 3548 1.614051 CCGCCACATGCCCACATATAT 60.614 52.381 0.00 0.00 33.67 0.86
3513 3549 0.250684 CCGCCACATGCCCACATATA 60.251 55.000 0.00 0.00 33.67 0.86
3514 3550 1.529010 CCGCCACATGCCCACATAT 60.529 57.895 0.00 0.00 33.67 1.78
3515 3551 2.124362 CCGCCACATGCCCACATA 60.124 61.111 0.00 0.00 33.67 2.29
3523 3559 3.069946 ATGGTTGCCCGCCACATG 61.070 61.111 0.00 0.00 39.03 3.21
3524 3560 3.069946 CATGGTTGCCCGCCACAT 61.070 61.111 0.00 0.00 39.03 3.21
3525 3561 4.277009 TCATGGTTGCCCGCCACA 62.277 61.111 0.00 0.00 39.03 4.17
3526 3562 3.747976 GTCATGGTTGCCCGCCAC 61.748 66.667 0.00 0.00 39.03 5.01
3527 3563 3.799286 TTGTCATGGTTGCCCGCCA 62.799 57.895 0.00 0.00 40.68 5.69
3528 3564 2.093537 TTTTGTCATGGTTGCCCGCC 62.094 55.000 0.00 0.00 0.00 6.13
3532 3568 0.387565 ACCGTTTTGTCATGGTTGCC 59.612 50.000 0.00 0.00 31.33 4.52
3582 3618 0.664761 GCTCACAACAGCTTCTGCAA 59.335 50.000 0.00 0.00 42.74 4.08
3591 3627 3.311871 GCTATGGATGAAGCTCACAACAG 59.688 47.826 0.00 0.00 35.80 3.16
3595 3631 3.135167 TGATGCTATGGATGAAGCTCACA 59.865 43.478 0.00 0.00 39.53 3.58
3599 3635 4.580868 CAGATGATGCTATGGATGAAGCT 58.419 43.478 0.00 0.00 39.53 3.74
3613 3649 6.438259 AGAAAGAAATGTCAGCAGATGATG 57.562 37.500 0.00 0.00 40.92 3.07
3615 3651 6.713903 AGAAAGAAAGAAATGTCAGCAGATGA 59.286 34.615 0.00 0.00 34.79 2.92
3616 3652 6.910995 AGAAAGAAAGAAATGTCAGCAGATG 58.089 36.000 0.00 0.00 0.00 2.90
3617 3653 7.521871 AAGAAAGAAAGAAATGTCAGCAGAT 57.478 32.000 0.00 0.00 0.00 2.90
3618 3654 6.949352 AAGAAAGAAAGAAATGTCAGCAGA 57.051 33.333 0.00 0.00 0.00 4.26
3621 3657 6.507023 TCCAAAGAAAGAAAGAAATGTCAGC 58.493 36.000 0.00 0.00 0.00 4.26
3623 3659 7.487829 CGTTTCCAAAGAAAGAAAGAAATGTCA 59.512 33.333 0.00 0.00 42.60 3.58
3624 3660 7.043391 CCGTTTCCAAAGAAAGAAAGAAATGTC 60.043 37.037 0.00 0.00 42.60 3.06
3626 3662 6.978080 TCCGTTTCCAAAGAAAGAAAGAAATG 59.022 34.615 0.00 0.00 42.60 2.32
3627 3663 7.107639 TCCGTTTCCAAAGAAAGAAAGAAAT 57.892 32.000 0.00 0.00 42.60 2.17
3628 3664 6.518208 TCCGTTTCCAAAGAAAGAAAGAAA 57.482 33.333 0.00 0.00 42.60 2.52
3629 3665 6.709018 ATCCGTTTCCAAAGAAAGAAAGAA 57.291 33.333 0.00 0.00 42.60 2.52
3630 3666 6.709018 AATCCGTTTCCAAAGAAAGAAAGA 57.291 33.333 0.00 0.00 42.60 2.52
3632 3668 5.522097 GCAAATCCGTTTCCAAAGAAAGAAA 59.478 36.000 0.00 0.00 42.60 2.52
3633 3669 5.047188 GCAAATCCGTTTCCAAAGAAAGAA 58.953 37.500 0.00 0.00 42.60 2.52
3634 3670 4.340950 AGCAAATCCGTTTCCAAAGAAAGA 59.659 37.500 0.00 0.00 42.60 2.52
3635 3671 4.445385 CAGCAAATCCGTTTCCAAAGAAAG 59.555 41.667 0.00 0.00 42.60 2.62
3636 3672 4.367450 CAGCAAATCCGTTTCCAAAGAAA 58.633 39.130 0.00 0.00 39.70 2.52
3637 3673 3.798548 GCAGCAAATCCGTTTCCAAAGAA 60.799 43.478 0.00 0.00 0.00 2.52
3640 3676 1.270041 GGCAGCAAATCCGTTTCCAAA 60.270 47.619 0.00 0.00 0.00 3.28
3641 3677 0.316841 GGCAGCAAATCCGTTTCCAA 59.683 50.000 0.00 0.00 0.00 3.53
3642 3678 0.825425 TGGCAGCAAATCCGTTTCCA 60.825 50.000 0.00 0.00 0.00 3.53
3644 3680 3.715628 ATATGGCAGCAAATCCGTTTC 57.284 42.857 0.00 0.00 0.00 2.78
3645 3681 3.195396 ACAATATGGCAGCAAATCCGTTT 59.805 39.130 0.00 0.00 0.00 3.60
3646 3682 2.760092 ACAATATGGCAGCAAATCCGTT 59.240 40.909 0.00 0.00 0.00 4.44
3647 3683 2.378038 ACAATATGGCAGCAAATCCGT 58.622 42.857 0.00 0.00 0.00 4.69
3650 3686 5.519927 GGTTACAACAATATGGCAGCAAATC 59.480 40.000 0.00 0.00 0.00 2.17
3651 3687 5.046735 TGGTTACAACAATATGGCAGCAAAT 60.047 36.000 0.00 0.00 0.00 2.32
3652 3688 4.281941 TGGTTACAACAATATGGCAGCAAA 59.718 37.500 0.00 0.00 0.00 3.68
3653 3689 3.829026 TGGTTACAACAATATGGCAGCAA 59.171 39.130 0.00 0.00 0.00 3.91
3654 3690 3.425659 TGGTTACAACAATATGGCAGCA 58.574 40.909 0.00 0.00 0.00 4.41
3657 3693 4.574421 CGAGATGGTTACAACAATATGGCA 59.426 41.667 0.00 0.00 0.00 4.92
3658 3694 4.574828 ACGAGATGGTTACAACAATATGGC 59.425 41.667 0.00 0.00 0.00 4.40
3665 3701 3.973206 ATGGACGAGATGGTTACAACA 57.027 42.857 0.00 0.00 0.00 3.33
3667 3703 4.819105 AGAATGGACGAGATGGTTACAA 57.181 40.909 0.00 0.00 0.00 2.41
3760 4085 2.509166 TTCTCCTTCTCGCTAGACCA 57.491 50.000 0.00 0.00 0.00 4.02
3761 4086 3.056749 TGTTTTCTCCTTCTCGCTAGACC 60.057 47.826 0.00 0.00 0.00 3.85
3827 4152 4.796231 GTCCACGTCGCCGCAGAT 62.796 66.667 0.00 0.00 37.70 2.90
3835 4160 1.800315 CAGGTTAGCGTCCACGTCG 60.800 63.158 0.36 0.00 42.22 5.12
3836 4161 2.092882 GCAGGTTAGCGTCCACGTC 61.093 63.158 0.36 0.00 42.22 4.34
3837 4162 2.048503 GCAGGTTAGCGTCCACGT 60.049 61.111 0.36 0.00 42.22 4.49
3838 4163 2.048597 TGCAGGTTAGCGTCCACG 60.049 61.111 0.00 0.00 43.27 4.94
3839 4164 2.033194 GGTGCAGGTTAGCGTCCAC 61.033 63.158 0.00 0.00 37.31 4.02
3840 4165 2.345991 GGTGCAGGTTAGCGTCCA 59.654 61.111 0.00 0.00 37.31 4.02
3841 4166 2.436115 GGGTGCAGGTTAGCGTCC 60.436 66.667 0.00 0.00 37.31 4.79
3842 4167 1.003718 AAGGGTGCAGGTTAGCGTC 60.004 57.895 0.00 0.00 37.31 5.19
3843 4168 1.302511 CAAGGGTGCAGGTTAGCGT 60.303 57.895 0.00 0.00 37.31 5.07
3844 4169 1.003839 TCAAGGGTGCAGGTTAGCG 60.004 57.895 0.00 0.00 37.31 4.26
3845 4170 0.036875 ACTCAAGGGTGCAGGTTAGC 59.963 55.000 0.00 0.00 0.00 3.09
3846 4171 1.347707 TGACTCAAGGGTGCAGGTTAG 59.652 52.381 0.00 0.00 0.00 2.34
3847 4172 1.347707 CTGACTCAAGGGTGCAGGTTA 59.652 52.381 0.00 0.00 0.00 2.85
3848 4173 0.109342 CTGACTCAAGGGTGCAGGTT 59.891 55.000 0.00 0.00 0.00 3.50
3849 4174 1.757306 CTGACTCAAGGGTGCAGGT 59.243 57.895 0.00 0.00 0.00 4.00
3850 4175 1.002868 CCTGACTCAAGGGTGCAGG 60.003 63.158 0.00 0.00 40.03 4.85
3851 4176 0.976641 TACCTGACTCAAGGGTGCAG 59.023 55.000 0.00 0.00 42.11 4.41
3852 4177 0.685097 GTACCTGACTCAAGGGTGCA 59.315 55.000 1.04 0.00 42.11 4.57
3853 4178 0.389948 CGTACCTGACTCAAGGGTGC 60.390 60.000 1.04 0.00 42.11 5.01
3854 4179 0.966920 ACGTACCTGACTCAAGGGTG 59.033 55.000 0.00 0.00 42.11 4.61
3855 4180 0.966920 CACGTACCTGACTCAAGGGT 59.033 55.000 0.00 0.00 42.11 4.34
3856 4181 1.067776 GTCACGTACCTGACTCAAGGG 60.068 57.143 15.28 0.00 42.11 3.95
3857 4182 1.067776 GGTCACGTACCTGACTCAAGG 60.068 57.143 19.94 0.00 45.75 3.61
3858 4183 2.349297 GGTCACGTACCTGACTCAAG 57.651 55.000 19.94 0.00 45.75 3.02
3868 4193 0.389948 CCTCCTTGCTGGTCACGTAC 60.390 60.000 0.00 0.00 37.07 3.67
3869 4194 1.972198 CCTCCTTGCTGGTCACGTA 59.028 57.895 0.00 0.00 37.07 3.57
3870 4195 2.743718 CCTCCTTGCTGGTCACGT 59.256 61.111 0.00 0.00 37.07 4.49
3871 4196 2.743928 GCCTCCTTGCTGGTCACG 60.744 66.667 0.00 0.00 37.07 4.35
3872 4197 2.360475 GGCCTCCTTGCTGGTCAC 60.360 66.667 0.00 0.00 37.07 3.67
3873 4198 4.020617 CGGCCTCCTTGCTGGTCA 62.021 66.667 0.00 0.00 37.07 4.02
3897 4222 2.507102 CTACGCAGCACTCGGTGG 60.507 66.667 6.23 0.00 41.09 4.61
3898 4223 2.507102 CCTACGCAGCACTCGGTG 60.507 66.667 0.00 0.25 43.71 4.94
3899 4224 4.436998 GCCTACGCAGCACTCGGT 62.437 66.667 0.00 0.00 34.03 4.69
3901 4226 4.778415 ACGCCTACGCAGCACTCG 62.778 66.667 0.00 0.00 45.53 4.18
3902 4227 3.181967 CACGCCTACGCAGCACTC 61.182 66.667 0.00 0.00 45.53 3.51
3903 4228 3.633094 CTCACGCCTACGCAGCACT 62.633 63.158 0.00 0.00 45.53 4.40
3904 4229 3.181967 CTCACGCCTACGCAGCAC 61.182 66.667 0.00 0.00 45.53 4.40
3905 4230 3.370231 TCTCACGCCTACGCAGCA 61.370 61.111 0.00 0.00 45.53 4.41
3906 4231 2.881352 GTCTCACGCCTACGCAGC 60.881 66.667 0.00 0.00 45.53 5.25
3907 4232 1.801913 GTGTCTCACGCCTACGCAG 60.802 63.158 0.00 0.00 45.53 5.18
3908 4233 2.257371 GTGTCTCACGCCTACGCA 59.743 61.111 0.00 0.00 45.53 5.24
3922 4247 3.971702 GGCAAGGCCCTGAGGTGT 61.972 66.667 5.23 0.00 44.06 4.16
3955 4288 9.681062 ACTACCACAAAATACAGCAATTACTAT 57.319 29.630 0.00 0.00 0.00 2.12
3972 4305 7.223582 CACAAAAATATGTTTGCACTACCACAA 59.776 33.333 16.82 0.00 41.33 3.33
3978 4311 6.128607 GCATGCACAAAAATATGTTTGCACTA 60.129 34.615 16.82 3.61 41.33 2.74
4046 4379 8.928448 TCCTTATGTAGTGATCTAAATGCTCTT 58.072 33.333 0.00 0.00 0.00 2.85
4047 4380 8.364142 GTCCTTATGTAGTGATCTAAATGCTCT 58.636 37.037 0.00 0.00 0.00 4.09
4048 4381 8.364142 AGTCCTTATGTAGTGATCTAAATGCTC 58.636 37.037 0.00 0.00 0.00 4.26
4049 4382 8.147058 CAGTCCTTATGTAGTGATCTAAATGCT 58.853 37.037 0.00 0.00 0.00 3.79
4050 4383 8.144478 TCAGTCCTTATGTAGTGATCTAAATGC 58.856 37.037 0.00 0.00 0.00 3.56
4055 4388 9.421399 TCATTTCAGTCCTTATGTAGTGATCTA 57.579 33.333 0.00 0.00 0.00 1.98
4056 4389 8.311395 TCATTTCAGTCCTTATGTAGTGATCT 57.689 34.615 0.00 0.00 0.00 2.75
4057 4390 7.170658 GCTCATTTCAGTCCTTATGTAGTGATC 59.829 40.741 0.00 0.00 0.00 2.92
4058 4391 6.989169 GCTCATTTCAGTCCTTATGTAGTGAT 59.011 38.462 0.00 0.00 0.00 3.06
4059 4392 6.341316 GCTCATTTCAGTCCTTATGTAGTGA 58.659 40.000 0.00 0.00 0.00 3.41
4060 4393 5.233050 CGCTCATTTCAGTCCTTATGTAGTG 59.767 44.000 0.00 0.00 0.00 2.74
4061 4394 5.127194 TCGCTCATTTCAGTCCTTATGTAGT 59.873 40.000 0.00 0.00 0.00 2.73
4062 4395 5.592054 TCGCTCATTTCAGTCCTTATGTAG 58.408 41.667 0.00 0.00 0.00 2.74
4063 4396 5.592104 TCGCTCATTTCAGTCCTTATGTA 57.408 39.130 0.00 0.00 0.00 2.29
4064 4397 4.471904 TCGCTCATTTCAGTCCTTATGT 57.528 40.909 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.