Multiple sequence alignment - TraesCS7A01G308600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G308600 chr7A 100.000 5412 0 0 1 5412 436791345 436785934 0.000000e+00 9995.0
1 TraesCS7A01G308600 chr7A 100.000 28 0 0 1022 1049 321046358 321046331 1.000000e-02 52.8
2 TraesCS7A01G308600 chr7D 94.239 3836 155 26 1517 5312 386759024 386755215 0.000000e+00 5799.0
3 TraesCS7A01G308600 chr7D 93.056 936 45 7 603 1518 386760041 386759106 0.000000e+00 1351.0
4 TraesCS7A01G308600 chr7B 93.864 3341 128 24 611 3905 381839299 381835990 0.000000e+00 4963.0
5 TraesCS7A01G308600 chr7B 90.687 1514 84 23 3937 5412 381835990 381834496 0.000000e+00 1962.0
6 TraesCS7A01G308600 chr7B 85.960 349 38 7 187 529 381840298 381839955 3.980000e-96 363.0
7 TraesCS7A01G308600 chr7B 86.022 93 13 0 83 175 685212956 685212864 3.450000e-17 100.0
8 TraesCS7A01G308600 chr4B 88.514 148 16 1 37 184 652920225 652920371 1.550000e-40 178.0
9 TraesCS7A01G308600 chr2A 94.444 54 3 0 545 598 719733729 719733782 3.470000e-12 84.2
10 TraesCS7A01G308600 chr4D 86.301 73 10 0 5074 5146 36418822 36418750 4.490000e-11 80.5
11 TraesCS7A01G308600 chr5B 82.927 82 11 1 5086 5167 406547088 406547166 2.700000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G308600 chr7A 436785934 436791345 5411 True 9995.000000 9995 100.000000 1 5412 1 chr7A.!!$R2 5411
1 TraesCS7A01G308600 chr7D 386755215 386760041 4826 True 3575.000000 5799 93.647500 603 5312 2 chr7D.!!$R1 4709
2 TraesCS7A01G308600 chr7B 381834496 381840298 5802 True 2429.333333 4963 90.170333 187 5412 3 chr7B.!!$R2 5225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 212 0.030603 TTGGCCCCCTTTCTTTGGTT 60.031 50.000 0.00 0.00 0.00 3.67 F
597 618 0.110486 ACAACGGTTGAAGATGCCCT 59.890 50.000 26.39 0.00 0.00 5.19 F
752 1340 0.253160 AGATCTTGTGGGCCCTACCA 60.253 55.000 25.70 14.39 42.05 3.25 F
1355 1969 0.331278 TTCCAGGTAGCCCCATGTTG 59.669 55.000 0.00 0.00 34.66 3.33 F
1695 2395 1.153168 CGCCTCCACATACCTTGGG 60.153 63.158 0.00 0.00 34.56 4.12 F
1764 2472 2.103263 GGAGTGCGATCATAGGACCTTT 59.897 50.000 0.00 0.00 0.00 3.11 F
3085 3803 2.106166 GACAGATCAGGAGGCATTGGAT 59.894 50.000 0.00 0.00 0.00 3.41 F
4041 4776 1.056660 ATTTCCTGACCCGACAGTGT 58.943 50.000 0.00 0.00 36.30 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2581 0.625849 TGCCTTTCCAGAATCTCCCC 59.374 55.000 0.0 0.00 0.00 4.81 R
2375 3089 5.738619 TCTACATCTCACAGCTTGGTTTA 57.261 39.130 0.0 0.00 0.00 2.01 R
2429 3145 6.317789 ACACATGATGAGAAACAAACGAAT 57.682 33.333 0.0 0.00 0.00 3.34 R
3268 3986 2.706190 AGTGCCTAAACCAGAGACTTGT 59.294 45.455 0.0 0.00 0.00 3.16 R
3276 3994 3.055094 ACCAGTGATAGTGCCTAAACCAG 60.055 47.826 0.0 0.00 0.00 4.00 R
3498 4217 6.274157 AGTGTATGGTATCGAGATGGATTC 57.726 41.667 0.0 0.00 0.00 2.52 R
4192 4946 0.994247 ATGCTGAACATGACAGGGGA 59.006 50.000 19.7 4.54 37.70 4.81 R
5271 6047 0.391263 CCAGGTAAAGTCCAGCCGAC 60.391 60.000 0.0 0.00 42.32 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.349412 AGTAAGCTTAGTATAGTTGACCTGG 57.651 40.000 12.25 0.00 0.00 4.45
33 34 4.674281 AGCTTAGTATAGTTGACCTGGC 57.326 45.455 0.00 0.00 0.00 4.85
34 35 3.388350 AGCTTAGTATAGTTGACCTGGCC 59.612 47.826 0.00 0.00 0.00 5.36
35 36 3.134081 GCTTAGTATAGTTGACCTGGCCA 59.866 47.826 4.71 4.71 0.00 5.36
36 37 4.383770 GCTTAGTATAGTTGACCTGGCCAA 60.384 45.833 7.01 0.00 0.00 4.52
37 38 5.741011 CTTAGTATAGTTGACCTGGCCAAA 58.259 41.667 7.01 0.00 0.00 3.28
38 39 4.650972 AGTATAGTTGACCTGGCCAAAA 57.349 40.909 7.01 0.00 0.00 2.44
39 40 5.193099 AGTATAGTTGACCTGGCCAAAAT 57.807 39.130 7.01 0.00 0.00 1.82
40 41 5.580022 AGTATAGTTGACCTGGCCAAAATT 58.420 37.500 7.01 0.00 0.00 1.82
41 42 5.652452 AGTATAGTTGACCTGGCCAAAATTC 59.348 40.000 7.01 0.89 0.00 2.17
42 43 1.613437 AGTTGACCTGGCCAAAATTCG 59.387 47.619 7.01 0.00 0.00 3.34
43 44 0.965439 TTGACCTGGCCAAAATTCGG 59.035 50.000 7.01 5.79 0.00 4.30
56 57 7.302350 GCCAAAATTCGGCTAAATAATTTGT 57.698 32.000 10.82 0.00 46.56 2.83
57 58 8.413899 GCCAAAATTCGGCTAAATAATTTGTA 57.586 30.769 10.82 0.00 46.56 2.41
58 59 8.874816 GCCAAAATTCGGCTAAATAATTTGTAA 58.125 29.630 10.82 0.00 46.56 2.41
85 86 7.912056 TGAAGACATCAATTAGAGAGGTTTG 57.088 36.000 0.00 0.00 34.30 2.93
86 87 7.679783 TGAAGACATCAATTAGAGAGGTTTGA 58.320 34.615 0.00 0.00 34.30 2.69
87 88 7.821359 TGAAGACATCAATTAGAGAGGTTTGAG 59.179 37.037 0.00 0.00 34.30 3.02
88 89 7.487822 AGACATCAATTAGAGAGGTTTGAGA 57.512 36.000 0.00 0.00 32.13 3.27
89 90 7.911651 AGACATCAATTAGAGAGGTTTGAGAA 58.088 34.615 0.00 0.00 32.13 2.87
90 91 8.378565 AGACATCAATTAGAGAGGTTTGAGAAA 58.621 33.333 0.00 0.00 32.13 2.52
91 92 9.171877 GACATCAATTAGAGAGGTTTGAGAAAT 57.828 33.333 0.00 0.00 32.13 2.17
92 93 9.525826 ACATCAATTAGAGAGGTTTGAGAAATT 57.474 29.630 0.00 0.00 32.13 1.82
93 94 9.784680 CATCAATTAGAGAGGTTTGAGAAATTG 57.215 33.333 0.00 0.00 35.45 2.32
94 95 8.924511 TCAATTAGAGAGGTTTGAGAAATTGT 57.075 30.769 0.00 0.00 35.57 2.71
95 96 9.003658 TCAATTAGAGAGGTTTGAGAAATTGTC 57.996 33.333 0.00 0.00 35.57 3.18
96 97 8.786898 CAATTAGAGAGGTTTGAGAAATTGTCA 58.213 33.333 0.00 0.00 31.61 3.58
97 98 8.924511 ATTAGAGAGGTTTGAGAAATTGTCAA 57.075 30.769 1.15 1.15 31.98 3.18
98 99 6.625873 AGAGAGGTTTGAGAAATTGTCAAC 57.374 37.500 4.99 1.83 33.63 3.18
99 100 5.532779 AGAGAGGTTTGAGAAATTGTCAACC 59.467 40.000 4.99 9.87 33.63 3.77
100 101 4.584743 AGAGGTTTGAGAAATTGTCAACCC 59.415 41.667 10.72 10.72 36.88 4.11
101 102 4.285863 AGGTTTGAGAAATTGTCAACCCA 58.714 39.130 18.72 0.00 38.60 4.51
102 103 4.342092 AGGTTTGAGAAATTGTCAACCCAG 59.658 41.667 18.72 0.00 38.60 4.45
103 104 4.099419 GGTTTGAGAAATTGTCAACCCAGT 59.901 41.667 13.22 0.00 36.68 4.00
104 105 5.281727 GTTTGAGAAATTGTCAACCCAGTC 58.718 41.667 4.99 0.00 33.63 3.51
105 106 4.163441 TGAGAAATTGTCAACCCAGTCA 57.837 40.909 0.00 0.00 0.00 3.41
106 107 4.531854 TGAGAAATTGTCAACCCAGTCAA 58.468 39.130 0.00 0.00 0.00 3.18
107 108 4.952957 TGAGAAATTGTCAACCCAGTCAAA 59.047 37.500 0.00 0.00 0.00 2.69
108 109 5.420421 TGAGAAATTGTCAACCCAGTCAAAA 59.580 36.000 0.00 0.00 0.00 2.44
109 110 6.098124 TGAGAAATTGTCAACCCAGTCAAAAT 59.902 34.615 0.00 0.00 0.00 1.82
110 111 6.888105 AGAAATTGTCAACCCAGTCAAAATT 58.112 32.000 0.00 0.00 0.00 1.82
111 112 6.762661 AGAAATTGTCAACCCAGTCAAAATTG 59.237 34.615 0.00 0.00 0.00 2.32
112 113 4.399004 TTGTCAACCCAGTCAAAATTGG 57.601 40.909 0.00 0.00 32.16 3.16
118 119 1.273327 CCCAGTCAAAATTGGGTGAGC 59.727 52.381 1.33 0.00 45.29 4.26
119 120 1.273327 CCAGTCAAAATTGGGTGAGCC 59.727 52.381 0.00 0.00 0.00 4.70
120 121 1.962807 CAGTCAAAATTGGGTGAGCCA 59.037 47.619 0.00 0.00 36.17 4.75
121 122 2.364970 CAGTCAAAATTGGGTGAGCCAA 59.635 45.455 19.31 19.31 36.17 4.52
122 123 3.007182 CAGTCAAAATTGGGTGAGCCAAT 59.993 43.478 22.21 22.21 39.24 3.16
123 124 3.259123 AGTCAAAATTGGGTGAGCCAATC 59.741 43.478 27.02 15.15 36.95 2.67
124 125 3.259123 GTCAAAATTGGGTGAGCCAATCT 59.741 43.478 27.02 13.00 36.95 2.40
125 126 3.511146 TCAAAATTGGGTGAGCCAATCTC 59.489 43.478 27.02 0.00 42.23 2.75
139 140 1.945394 CAATCTCAATTGGAGGCCTCG 59.055 52.381 26.36 12.35 44.19 4.63
140 141 1.500474 ATCTCAATTGGAGGCCTCGA 58.500 50.000 26.36 20.75 44.19 4.04
141 142 1.500474 TCTCAATTGGAGGCCTCGAT 58.500 50.000 26.36 19.08 44.19 3.59
142 143 1.414181 TCTCAATTGGAGGCCTCGATC 59.586 52.381 26.36 13.41 44.19 3.69
143 144 0.104855 TCAATTGGAGGCCTCGATCG 59.895 55.000 26.36 9.36 0.00 3.69
144 145 0.104855 CAATTGGAGGCCTCGATCGA 59.895 55.000 26.36 18.32 0.00 3.59
145 146 0.830648 AATTGGAGGCCTCGATCGAA 59.169 50.000 26.36 13.40 0.00 3.71
146 147 1.051812 ATTGGAGGCCTCGATCGAAT 58.948 50.000 26.36 14.94 0.00 3.34
147 148 0.104855 TTGGAGGCCTCGATCGAATG 59.895 55.000 26.36 14.00 0.00 2.67
148 149 1.043116 TGGAGGCCTCGATCGAATGT 61.043 55.000 26.36 3.94 0.00 2.71
149 150 0.598680 GGAGGCCTCGATCGAATGTG 60.599 60.000 26.36 7.19 0.00 3.21
150 151 0.385751 GAGGCCTCGATCGAATGTGA 59.614 55.000 19.06 0.00 0.00 3.58
151 152 0.387202 AGGCCTCGATCGAATGTGAG 59.613 55.000 19.92 6.04 0.00 3.51
152 153 1.218230 GGCCTCGATCGAATGTGAGC 61.218 60.000 19.92 13.85 0.00 4.26
153 154 0.249238 GCCTCGATCGAATGTGAGCT 60.249 55.000 19.92 0.00 0.00 4.09
154 155 1.764851 CCTCGATCGAATGTGAGCTC 58.235 55.000 19.92 6.82 0.00 4.09
155 156 1.336440 CCTCGATCGAATGTGAGCTCT 59.664 52.381 19.92 0.00 0.00 4.09
156 157 2.223688 CCTCGATCGAATGTGAGCTCTT 60.224 50.000 19.92 0.00 0.00 2.85
157 158 3.443037 CTCGATCGAATGTGAGCTCTTT 58.557 45.455 19.92 6.07 0.00 2.52
158 159 4.498177 CCTCGATCGAATGTGAGCTCTTTA 60.498 45.833 19.92 1.24 0.00 1.85
159 160 4.993905 TCGATCGAATGTGAGCTCTTTAA 58.006 39.130 16.99 0.00 0.00 1.52
160 161 5.407502 TCGATCGAATGTGAGCTCTTTAAA 58.592 37.500 16.99 0.00 0.00 1.52
161 162 5.867174 TCGATCGAATGTGAGCTCTTTAAAA 59.133 36.000 16.99 0.00 0.00 1.52
162 163 6.535150 TCGATCGAATGTGAGCTCTTTAAAAT 59.465 34.615 16.99 0.65 0.00 1.82
163 164 7.064609 TCGATCGAATGTGAGCTCTTTAAAATT 59.935 33.333 16.99 0.76 0.00 1.82
164 165 8.328146 CGATCGAATGTGAGCTCTTTAAAATTA 58.672 33.333 16.19 0.00 0.00 1.40
165 166 9.643652 GATCGAATGTGAGCTCTTTAAAATTAG 57.356 33.333 16.19 2.18 0.00 1.73
166 167 7.464358 TCGAATGTGAGCTCTTTAAAATTAGC 58.536 34.615 16.19 8.20 35.16 3.09
167 168 6.409185 CGAATGTGAGCTCTTTAAAATTAGCG 59.591 38.462 16.19 0.00 39.94 4.26
168 169 6.985188 ATGTGAGCTCTTTAAAATTAGCGA 57.015 33.333 16.19 0.00 39.94 4.93
169 170 6.408858 TGTGAGCTCTTTAAAATTAGCGAG 57.591 37.500 16.19 4.15 39.94 5.03
170 171 5.163854 TGTGAGCTCTTTAAAATTAGCGAGC 60.164 40.000 16.19 13.99 42.98 5.03
175 176 7.006187 GCTCTTTAAAATTAGCGAGCTTAGT 57.994 36.000 14.38 0.00 40.37 2.24
176 177 6.902417 GCTCTTTAAAATTAGCGAGCTTAGTG 59.098 38.462 14.38 0.00 40.37 2.74
177 178 7.413109 GCTCTTTAAAATTAGCGAGCTTAGTGT 60.413 37.037 14.38 0.00 40.37 3.55
178 179 8.319143 TCTTTAAAATTAGCGAGCTTAGTGTT 57.681 30.769 1.86 0.00 0.00 3.32
179 180 8.227791 TCTTTAAAATTAGCGAGCTTAGTGTTG 58.772 33.333 1.86 0.00 0.00 3.33
180 181 5.941948 AAAATTAGCGAGCTTAGTGTTGT 57.058 34.783 1.86 0.00 0.00 3.32
181 182 8.537049 TTAAAATTAGCGAGCTTAGTGTTGTA 57.463 30.769 1.86 0.00 0.00 2.41
182 183 6.648725 AAATTAGCGAGCTTAGTGTTGTAG 57.351 37.500 1.86 0.00 0.00 2.74
183 184 5.578005 ATTAGCGAGCTTAGTGTTGTAGA 57.422 39.130 1.86 0.00 0.00 2.59
184 185 3.495670 AGCGAGCTTAGTGTTGTAGAG 57.504 47.619 0.00 0.00 0.00 2.43
185 186 3.082548 AGCGAGCTTAGTGTTGTAGAGA 58.917 45.455 0.00 0.00 0.00 3.10
189 190 5.403246 CGAGCTTAGTGTTGTAGAGAATGT 58.597 41.667 0.00 0.00 0.00 2.71
195 196 7.591426 GCTTAGTGTTGTAGAGAATGTTTTTGG 59.409 37.037 0.00 0.00 0.00 3.28
198 199 4.038642 TGTTGTAGAGAATGTTTTTGGCCC 59.961 41.667 0.00 0.00 0.00 5.80
202 203 1.977854 GAGAATGTTTTTGGCCCCCTT 59.022 47.619 0.00 0.00 0.00 3.95
211 212 0.030603 TTGGCCCCCTTTCTTTGGTT 60.031 50.000 0.00 0.00 0.00 3.67
212 213 0.030603 TGGCCCCCTTTCTTTGGTTT 60.031 50.000 0.00 0.00 0.00 3.27
214 215 0.396435 GCCCCCTTTCTTTGGTTTGG 59.604 55.000 0.00 0.00 0.00 3.28
215 216 2.037463 GCCCCCTTTCTTTGGTTTGGA 61.037 52.381 0.00 0.00 0.00 3.53
216 217 1.970640 CCCCCTTTCTTTGGTTTGGAG 59.029 52.381 0.00 0.00 0.00 3.86
234 236 8.600625 GGTTTGGAGATTAAAATTAAAATCCGC 58.399 33.333 8.38 3.38 35.62 5.54
235 237 8.600625 GTTTGGAGATTAAAATTAAAATCCGCC 58.399 33.333 8.38 10.12 35.62 6.13
243 245 8.950208 TTAAAATTAAAATCCGCCCTTATTGG 57.050 30.769 0.00 0.00 0.00 3.16
245 247 7.663043 AAATTAAAATCCGCCCTTATTGGTA 57.337 32.000 0.00 0.00 0.00 3.25
246 248 6.894339 ATTAAAATCCGCCCTTATTGGTAG 57.106 37.500 0.00 0.00 0.00 3.18
270 272 6.435277 AGAAACCATGTTCTGCATTAACTCAT 59.565 34.615 11.92 0.00 36.48 2.90
275 277 8.028938 ACCATGTTCTGCATTAACTCATTAAAC 58.971 33.333 11.92 0.00 35.19 2.01
277 279 9.630098 CATGTTCTGCATTAACTCATTAAACTT 57.370 29.630 11.92 0.00 35.19 2.66
278 280 9.846248 ATGTTCTGCATTAACTCATTAAACTTC 57.154 29.630 11.92 0.00 33.98 3.01
282 284 9.162764 TCTGCATTAACTCATTAAACTTCTACC 57.837 33.333 0.00 0.00 33.98 3.18
283 285 7.970384 TGCATTAACTCATTAAACTTCTACCG 58.030 34.615 0.00 0.00 33.98 4.02
292 294 6.766944 TCATTAAACTTCTACCGTCAAAACCA 59.233 34.615 0.00 0.00 0.00 3.67
305 307 3.993736 GTCAAAACCATGCCCACATTAAC 59.006 43.478 0.00 0.00 32.87 2.01
311 313 4.095946 ACCATGCCCACATTAACTCAATT 58.904 39.130 0.00 0.00 32.87 2.32
555 576 4.993029 TTTTTGTGGTTGTCTTAGGTGG 57.007 40.909 0.00 0.00 0.00 4.61
559 580 2.303175 GTGGTTGTCTTAGGTGGCAAA 58.697 47.619 0.00 0.00 0.00 3.68
560 581 2.890945 GTGGTTGTCTTAGGTGGCAAAT 59.109 45.455 0.00 0.00 0.00 2.32
561 582 3.320826 GTGGTTGTCTTAGGTGGCAAATT 59.679 43.478 0.00 0.00 0.00 1.82
565 586 5.466819 GTTGTCTTAGGTGGCAAATTTACC 58.533 41.667 0.00 0.00 34.68 2.85
567 588 5.141182 TGTCTTAGGTGGCAAATTTACCAA 58.859 37.500 11.84 0.00 37.79 3.67
571 592 6.948886 TCTTAGGTGGCAAATTTACCAATACA 59.051 34.615 11.84 0.00 37.79 2.29
572 593 7.617723 TCTTAGGTGGCAAATTTACCAATACAT 59.382 33.333 11.84 0.78 37.79 2.29
573 594 8.824756 TTAGGTGGCAAATTTACCAATACATA 57.175 30.769 11.84 0.00 37.79 2.29
575 596 7.951591 AGGTGGCAAATTTACCAATACATATC 58.048 34.615 11.84 0.00 37.79 1.63
585 606 9.841295 ATTTACCAATACATATCTTACAACGGT 57.159 29.630 0.00 0.00 0.00 4.83
586 607 9.669887 TTTACCAATACATATCTTACAACGGTT 57.330 29.630 0.00 0.00 0.00 4.44
587 608 7.548196 ACCAATACATATCTTACAACGGTTG 57.452 36.000 18.81 18.81 0.00 3.77
589 610 7.825270 ACCAATACATATCTTACAACGGTTGAA 59.175 33.333 26.39 14.64 0.00 2.69
593 614 7.539712 ACATATCTTACAACGGTTGAAGATG 57.460 36.000 31.58 25.95 37.70 2.90
595 616 3.071479 TCTTACAACGGTTGAAGATGCC 58.929 45.455 26.39 0.00 0.00 4.40
596 617 1.816074 TACAACGGTTGAAGATGCCC 58.184 50.000 26.39 0.00 0.00 5.36
597 618 0.110486 ACAACGGTTGAAGATGCCCT 59.890 50.000 26.39 0.00 0.00 5.19
598 619 1.349688 ACAACGGTTGAAGATGCCCTA 59.650 47.619 26.39 0.00 0.00 3.53
600 621 2.109425 ACGGTTGAAGATGCCCTAAC 57.891 50.000 0.00 0.00 0.00 2.34
601 622 1.006832 CGGTTGAAGATGCCCTAACG 58.993 55.000 0.00 0.00 0.00 3.18
602 623 0.733150 GGTTGAAGATGCCCTAACGC 59.267 55.000 0.00 0.00 0.00 4.84
603 624 1.448985 GTTGAAGATGCCCTAACGCA 58.551 50.000 0.00 0.00 44.35 5.24
604 625 1.810151 GTTGAAGATGCCCTAACGCAA 59.190 47.619 0.00 0.00 43.24 4.85
605 626 2.418368 TGAAGATGCCCTAACGCAAT 57.582 45.000 0.00 0.00 43.24 3.56
666 1246 2.652079 CGAGCGCAGACACACACAG 61.652 63.158 11.47 0.00 0.00 3.66
668 1248 1.280886 GAGCGCAGACACACACAGAG 61.281 60.000 11.47 0.00 0.00 3.35
720 1303 3.071206 GAGAGAGGCTGCCGTCCA 61.071 66.667 13.96 0.00 0.00 4.02
752 1340 0.253160 AGATCTTGTGGGCCCTACCA 60.253 55.000 25.70 14.39 42.05 3.25
772 1360 7.386299 CCTACCATAGAAGAAAAATGATCCTCG 59.614 40.741 0.00 0.00 0.00 4.63
774 1362 6.763610 ACCATAGAAGAAAAATGATCCTCGAC 59.236 38.462 0.00 0.00 0.00 4.20
1094 1699 2.433664 GATGGTTTCGCCGTCGGT 60.434 61.111 13.94 0.00 42.80 4.69
1355 1969 0.331278 TTCCAGGTAGCCCCATGTTG 59.669 55.000 0.00 0.00 34.66 3.33
1406 2020 4.546570 CGATTCATGGTATTAGAGCGTCA 58.453 43.478 0.00 0.00 0.00 4.35
1449 2064 2.936919 AGGCGATTTGATGGCTCATA 57.063 45.000 0.00 0.00 35.99 2.15
1452 2067 2.415090 GGCGATTTGATGGCTCATATGC 60.415 50.000 0.00 0.00 34.17 3.14
1479 2095 3.255149 GGATTTTATCCTGCCTGCAGATG 59.745 47.826 20.29 0.00 46.30 2.90
1633 2333 5.654650 TGAAAGGTTGTTCCACTGTATTTGT 59.345 36.000 0.00 0.00 39.02 2.83
1690 2390 2.109181 GAGCCGCCTCCACATACC 59.891 66.667 0.00 0.00 31.68 2.73
1695 2395 1.153168 CGCCTCCACATACCTTGGG 60.153 63.158 0.00 0.00 34.56 4.12
1744 2444 3.081311 TTGCGCCGATCAGAGAGGG 62.081 63.158 4.18 0.00 0.00 4.30
1764 2472 2.103263 GGAGTGCGATCATAGGACCTTT 59.897 50.000 0.00 0.00 0.00 3.11
1786 2500 7.930865 CCTTTCCTTTTGTGTATGGAATCAAAA 59.069 33.333 0.00 0.00 38.24 2.44
2375 3089 5.049680 CCGTTGCGGCTATTACTTATTTGAT 60.050 40.000 0.00 0.00 41.17 2.57
2429 3145 6.539173 TGTGGAAGAATTCTTGTTAGGCTTA 58.461 36.000 25.12 1.54 46.56 3.09
2676 3394 3.267233 TGGGGTGGCAAGCCTGAT 61.267 61.111 9.72 0.00 43.94 2.90
3085 3803 2.106166 GACAGATCAGGAGGCATTGGAT 59.894 50.000 0.00 0.00 0.00 3.41
3110 3828 8.934023 TGGTATGTTTCTCTACCATTTCTTTT 57.066 30.769 0.00 0.00 41.85 2.27
3111 3829 9.362151 TGGTATGTTTCTCTACCATTTCTTTTT 57.638 29.630 0.00 0.00 41.85 1.94
3112 3830 9.841880 GGTATGTTTCTCTACCATTTCTTTTTC 57.158 33.333 0.00 0.00 37.83 2.29
3113 3831 9.841880 GTATGTTTCTCTACCATTTCTTTTTCC 57.158 33.333 0.00 0.00 0.00 3.13
3120 3838 8.923270 TCTCTACCATTTCTTTTTCCATGTTTT 58.077 29.630 0.00 0.00 0.00 2.43
3129 3847 9.447157 TTTCTTTTTCCATGTTTTCTTGTCATT 57.553 25.926 0.00 0.00 0.00 2.57
3137 3855 6.525628 CCATGTTTTCTTGTCATTCTTGATCG 59.474 38.462 0.00 0.00 33.56 3.69
3165 3883 5.165961 TCTATTTATCCTGCATACTGGCC 57.834 43.478 0.00 0.00 34.96 5.36
3195 3913 9.912634 GTTGATTTTCATCCAATTGACTTCTAA 57.087 29.630 7.12 0.00 0.00 2.10
3234 3952 8.237811 TGCTGATAGTAGTTCTGAATGACATA 57.762 34.615 0.00 0.00 0.00 2.29
3264 3982 9.896645 AGTGTTTTCATATATCTTCATGTGAGT 57.103 29.630 0.00 0.00 29.23 3.41
3265 3983 9.926751 GTGTTTTCATATATCTTCATGTGAGTG 57.073 33.333 0.00 0.00 29.23 3.51
3266 3984 9.112725 TGTTTTCATATATCTTCATGTGAGTGG 57.887 33.333 0.00 0.00 29.23 4.00
3267 3985 9.330063 GTTTTCATATATCTTCATGTGAGTGGA 57.670 33.333 0.00 0.00 29.23 4.02
3268 3986 9.904198 TTTTCATATATCTTCATGTGAGTGGAA 57.096 29.630 0.00 0.00 29.23 3.53
3276 3994 3.995199 TCATGTGAGTGGAACAAGTCTC 58.005 45.455 0.00 0.00 44.16 3.36
3293 4011 4.353777 AGTCTCTGGTTTAGGCACTATCA 58.646 43.478 0.00 0.00 42.38 2.15
3386 4104 8.368668 AGATAGTAAGTTTCAGTTTACAGCTGT 58.631 33.333 25.12 25.12 35.60 4.40
3425 4143 3.071874 TGATGTGGAAAAGTAGGCAGG 57.928 47.619 0.00 0.00 0.00 4.85
3433 4151 3.307480 GGAAAAGTAGGCAGGTAAGCAGA 60.307 47.826 0.00 0.00 35.83 4.26
3498 4217 4.706476 TGGTTGGAAAAGCTGGATTATCTG 59.294 41.667 0.00 0.00 0.00 2.90
3523 4242 6.761099 ATCCATCTCGATACCATACACTAC 57.239 41.667 0.00 0.00 0.00 2.73
3526 4245 6.206829 TCCATCTCGATACCATACACTACTTG 59.793 42.308 0.00 0.00 0.00 3.16
3564 4283 8.241367 AGTGACTGTTTTAAAACGTTCTGAATT 58.759 29.630 22.57 0.00 41.74 2.17
3712 4432 3.437049 GCTAGCTTGTAAACCTTCACTGG 59.563 47.826 7.70 0.00 0.00 4.00
3727 4447 6.146898 CCTTCACTGGGTAATTTTAAACACG 58.853 40.000 0.00 0.00 0.00 4.49
3856 4591 4.668576 ATACTTCAGCACACAATGAACG 57.331 40.909 0.00 0.00 32.25 3.95
4029 4764 1.203994 CTTGGCAGCTTCCATTTCCTG 59.796 52.381 5.74 0.00 35.77 3.86
4041 4776 1.056660 ATTTCCTGACCCGACAGTGT 58.943 50.000 0.00 0.00 36.30 3.55
4061 4815 8.730680 ACAGTGTTTAAGTAATAGGCTTGAATG 58.269 33.333 0.00 0.00 0.00 2.67
4145 4899 3.065925 CCTAATTGTCTTAAGCCTGCTGC 59.934 47.826 0.00 0.00 41.71 5.25
4166 4920 3.497640 GCTGATTTCCCTGATCGATTGAG 59.502 47.826 0.00 0.00 0.00 3.02
4185 4939 6.605471 TTGAGAACTGATTCAGTAGCCTAA 57.395 37.500 19.27 7.95 44.62 2.69
4192 4946 5.482175 ACTGATTCAGTAGCCTAAACAGTCT 59.518 40.000 17.63 0.00 43.46 3.24
4197 4951 2.044630 AGTAGCCTAAACAGTCTCCCCT 59.955 50.000 0.00 0.00 0.00 4.79
4198 4952 1.280457 AGCCTAAACAGTCTCCCCTG 58.720 55.000 0.00 0.00 38.45 4.45
4200 4954 1.066071 GCCTAAACAGTCTCCCCTGTC 60.066 57.143 0.00 0.00 44.74 3.51
4201 4955 2.257207 CCTAAACAGTCTCCCCTGTCA 58.743 52.381 0.00 0.00 44.74 3.58
4202 4956 2.840651 CCTAAACAGTCTCCCCTGTCAT 59.159 50.000 0.00 0.00 44.74 3.06
4203 4957 2.867109 AAACAGTCTCCCCTGTCATG 57.133 50.000 0.00 0.00 44.74 3.07
4224 4991 3.055094 TGTTCAGCATCTAACTCCTTCCC 60.055 47.826 0.00 0.00 0.00 3.97
4225 4992 2.832838 TCAGCATCTAACTCCTTCCCA 58.167 47.619 0.00 0.00 0.00 4.37
4226 4993 3.387962 TCAGCATCTAACTCCTTCCCAT 58.612 45.455 0.00 0.00 0.00 4.00
4229 4996 2.158696 GCATCTAACTCCTTCCCATGCT 60.159 50.000 0.00 0.00 33.80 3.79
4444 5211 3.826729 AGACTAAACAATGGTGGCTTTCC 59.173 43.478 0.00 0.00 0.00 3.13
4448 5215 5.652452 ACTAAACAATGGTGGCTTTCCTATC 59.348 40.000 0.00 0.00 0.00 2.08
4504 5272 6.311735 TGCTTAGAGTTTTTCTTTGGGGTAT 58.688 36.000 0.00 0.00 37.36 2.73
4511 5279 9.990868 AGAGTTTTTCTTTGGGGTATAATATGT 57.009 29.630 0.00 0.00 29.61 2.29
4537 5305 3.279434 ACAAATAATCCTGGAAGTCGGC 58.721 45.455 0.00 0.00 0.00 5.54
4538 5306 2.618709 CAAATAATCCTGGAAGTCGGCC 59.381 50.000 0.00 0.00 0.00 6.13
4539 5307 1.507140 ATAATCCTGGAAGTCGGCCA 58.493 50.000 2.24 0.00 0.00 5.36
4622 5390 8.240267 TGTTAAACTTGGTAAATAAAGGCTGT 57.760 30.769 0.00 0.00 0.00 4.40
4625 5393 9.535878 TTAAACTTGGTAAATAAAGGCTGTTTG 57.464 29.630 0.00 0.00 0.00 2.93
4641 5409 2.627221 TGTTTGTGTGCCATGCATTACT 59.373 40.909 0.00 0.00 41.91 2.24
4690 5458 5.764487 TGTGATGATTTTGCTGTGTGTTA 57.236 34.783 0.00 0.00 0.00 2.41
4691 5459 6.141560 TGTGATGATTTTGCTGTGTGTTAA 57.858 33.333 0.00 0.00 0.00 2.01
4692 5460 6.567959 TGTGATGATTTTGCTGTGTGTTAAA 58.432 32.000 0.00 0.00 0.00 1.52
4693 5461 6.475076 TGTGATGATTTTGCTGTGTGTTAAAC 59.525 34.615 0.00 0.00 0.00 2.01
4761 5529 0.808755 CCCGTAATTGCAACCTCACC 59.191 55.000 0.00 0.00 0.00 4.02
4841 5609 3.686241 TGAACTGAGATTGCAATCTTCCG 59.314 43.478 35.91 27.86 45.39 4.30
4843 5611 2.026822 ACTGAGATTGCAATCTTCCGGT 60.027 45.455 35.91 30.33 45.39 5.28
4937 5705 5.758296 GTGATCTTCACTGTTTGGAACACTA 59.242 40.000 0.45 0.00 43.73 2.74
5000 5768 0.310543 TGTGTGTTTGCTTCATCGCC 59.689 50.000 0.00 0.00 0.00 5.54
5042 5810 9.399403 GATATCTTTTTCCACTGACAACTTTTC 57.601 33.333 0.00 0.00 0.00 2.29
5046 5814 8.147704 TCTTTTTCCACTGACAACTTTTCTTTT 58.852 29.630 0.00 0.00 0.00 2.27
5047 5815 9.418045 CTTTTTCCACTGACAACTTTTCTTTTA 57.582 29.630 0.00 0.00 0.00 1.52
5049 5817 9.581099 TTTTCCACTGACAACTTTTCTTTTATC 57.419 29.630 0.00 0.00 0.00 1.75
5050 5818 7.272037 TCCACTGACAACTTTTCTTTTATCC 57.728 36.000 0.00 0.00 0.00 2.59
5052 5820 7.505585 TCCACTGACAACTTTTCTTTTATCCAT 59.494 33.333 0.00 0.00 0.00 3.41
5053 5821 8.143835 CCACTGACAACTTTTCTTTTATCCATT 58.856 33.333 0.00 0.00 0.00 3.16
5054 5822 9.185192 CACTGACAACTTTTCTTTTATCCATTC 57.815 33.333 0.00 0.00 0.00 2.67
5055 5823 8.912988 ACTGACAACTTTTCTTTTATCCATTCA 58.087 29.630 0.00 0.00 0.00 2.57
5057 5825 9.695526 TGACAACTTTTCTTTTATCCATTCATG 57.304 29.630 0.00 0.00 0.00 3.07
5093 5869 7.220740 TGTCATGGTAGTACAAAGAACATCAA 58.779 34.615 2.06 0.00 0.00 2.57
5096 5872 9.126151 TCATGGTAGTACAAAGAACATCAAAAA 57.874 29.630 2.06 0.00 0.00 1.94
5137 5913 7.552459 TCAAATTCATAGACCATCTAACGACA 58.448 34.615 0.00 0.00 31.96 4.35
5146 5922 6.698380 AGACCATCTAACGACAACTACAAAT 58.302 36.000 0.00 0.00 0.00 2.32
5160 5936 7.891561 ACAACTACAAATATTAAAGCAAGCCA 58.108 30.769 0.00 0.00 0.00 4.75
5183 5959 0.179137 GCGTGATCTGTCATGTCCGA 60.179 55.000 0.00 0.00 42.25 4.55
5202 5978 7.312154 TGTCCGAAAATAATGAATTGAACCTG 58.688 34.615 0.00 0.00 0.00 4.00
5214 5990 7.452880 TGAATTGAACCTGTTTTCATAGGAG 57.547 36.000 0.00 0.00 35.42 3.69
5256 6032 8.232913 AGAAAACTGCTAAATTTCCAGTGTTA 57.767 30.769 19.44 0.00 37.21 2.41
5263 6039 4.766404 AAATTTCCAGTGTTAGCTTCGG 57.234 40.909 0.00 0.00 0.00 4.30
5370 6146 4.615961 GCATCATCAAATTATGCTTCGAGC 59.384 41.667 3.38 0.58 42.15 5.03
5383 6159 4.160736 GCTTCGAGCAAATTTTACACCT 57.839 40.909 0.00 0.00 41.89 4.00
5390 6166 7.932335 TCGAGCAAATTTTACACCTCTAAAAA 58.068 30.769 0.00 0.00 31.09 1.94
5399 6175 8.989653 TTTTACACCTCTAAAAAGTGGTTTTG 57.010 30.769 0.00 0.00 39.79 2.44
5402 6178 7.092137 ACACCTCTAAAAAGTGGTTTTGTAC 57.908 36.000 0.00 0.00 39.79 2.90
5403 6179 6.660094 ACACCTCTAAAAAGTGGTTTTGTACA 59.340 34.615 0.00 0.00 39.79 2.90
5404 6180 7.340999 ACACCTCTAAAAAGTGGTTTTGTACAT 59.659 33.333 0.00 0.00 39.79 2.29
5405 6181 7.860872 CACCTCTAAAAAGTGGTTTTGTACATC 59.139 37.037 0.00 0.00 39.79 3.06
5406 6182 7.558444 ACCTCTAAAAAGTGGTTTTGTACATCA 59.442 33.333 0.00 0.00 39.79 3.07
5408 6184 7.708998 TCTAAAAAGTGGTTTTGTACATCACC 58.291 34.615 14.50 14.50 39.79 4.02
5411 6187 5.923733 AAGTGGTTTTGTACATCACCAAA 57.076 34.783 22.29 6.86 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 8.910944 CCAGGTCAACTATACTAAGCTTACTAA 58.089 37.037 0.86 0.00 0.00 2.24
7 8 7.014038 GCCAGGTCAACTATACTAAGCTTACTA 59.986 40.741 0.86 0.00 0.00 1.82
8 9 6.183360 GCCAGGTCAACTATACTAAGCTTACT 60.183 42.308 0.86 0.00 0.00 2.24
9 10 5.984323 GCCAGGTCAACTATACTAAGCTTAC 59.016 44.000 0.86 0.00 0.00 2.34
10 11 5.070047 GGCCAGGTCAACTATACTAAGCTTA 59.930 44.000 5.94 5.94 0.00 3.09
11 12 4.141688 GGCCAGGTCAACTATACTAAGCTT 60.142 45.833 3.48 3.48 0.00 3.74
12 13 3.388350 GGCCAGGTCAACTATACTAAGCT 59.612 47.826 0.00 0.00 0.00 3.74
13 14 3.134081 TGGCCAGGTCAACTATACTAAGC 59.866 47.826 0.00 0.00 0.00 3.09
14 15 5.353394 TTGGCCAGGTCAACTATACTAAG 57.647 43.478 5.11 0.00 0.00 2.18
15 16 5.765576 TTTGGCCAGGTCAACTATACTAA 57.234 39.130 5.79 0.00 0.00 2.24
16 17 5.765576 TTTTGGCCAGGTCAACTATACTA 57.234 39.130 5.79 0.00 0.00 1.82
17 18 4.650972 TTTTGGCCAGGTCAACTATACT 57.349 40.909 5.79 0.00 0.00 2.12
18 19 5.448632 CGAATTTTGGCCAGGTCAACTATAC 60.449 44.000 5.79 0.00 0.00 1.47
19 20 4.638421 CGAATTTTGGCCAGGTCAACTATA 59.362 41.667 5.79 0.00 0.00 1.31
20 21 3.443681 CGAATTTTGGCCAGGTCAACTAT 59.556 43.478 5.79 0.00 0.00 2.12
21 22 2.817258 CGAATTTTGGCCAGGTCAACTA 59.183 45.455 5.79 0.00 0.00 2.24
22 23 1.613437 CGAATTTTGGCCAGGTCAACT 59.387 47.619 5.79 0.00 0.00 3.16
23 24 1.336795 CCGAATTTTGGCCAGGTCAAC 60.337 52.381 5.79 0.00 0.00 3.18
24 25 0.965439 CCGAATTTTGGCCAGGTCAA 59.035 50.000 5.11 0.94 0.00 3.18
25 26 2.652313 CCGAATTTTGGCCAGGTCA 58.348 52.632 5.11 0.00 0.00 4.02
61 62 7.679783 TCAAACCTCTCTAATTGATGTCTTCA 58.320 34.615 0.00 0.00 0.00 3.02
62 63 8.037758 TCTCAAACCTCTCTAATTGATGTCTTC 58.962 37.037 0.00 0.00 31.92 2.87
63 64 7.911651 TCTCAAACCTCTCTAATTGATGTCTT 58.088 34.615 0.00 0.00 31.92 3.01
64 65 7.487822 TCTCAAACCTCTCTAATTGATGTCT 57.512 36.000 0.00 0.00 31.92 3.41
65 66 8.553459 TTTCTCAAACCTCTCTAATTGATGTC 57.447 34.615 0.00 0.00 31.92 3.06
66 67 9.525826 AATTTCTCAAACCTCTCTAATTGATGT 57.474 29.630 0.00 0.00 31.92 3.06
67 68 9.784680 CAATTTCTCAAACCTCTCTAATTGATG 57.215 33.333 0.00 0.00 35.05 3.07
68 69 9.525826 ACAATTTCTCAAACCTCTCTAATTGAT 57.474 29.630 0.00 0.00 36.04 2.57
69 70 8.924511 ACAATTTCTCAAACCTCTCTAATTGA 57.075 30.769 0.00 0.00 36.04 2.57
70 71 8.786898 TGACAATTTCTCAAACCTCTCTAATTG 58.213 33.333 0.00 0.00 37.60 2.32
71 72 8.924511 TGACAATTTCTCAAACCTCTCTAATT 57.075 30.769 0.00 0.00 0.00 1.40
72 73 8.787852 GTTGACAATTTCTCAAACCTCTCTAAT 58.212 33.333 0.00 0.00 29.44 1.73
73 74 7.228706 GGTTGACAATTTCTCAAACCTCTCTAA 59.771 37.037 0.00 0.00 30.27 2.10
74 75 6.710744 GGTTGACAATTTCTCAAACCTCTCTA 59.289 38.462 0.00 0.00 30.27 2.43
75 76 5.532779 GGTTGACAATTTCTCAAACCTCTCT 59.467 40.000 0.00 0.00 30.27 3.10
76 77 5.763088 GGTTGACAATTTCTCAAACCTCTC 58.237 41.667 0.00 0.00 30.27 3.20
77 78 5.774498 GGTTGACAATTTCTCAAACCTCT 57.226 39.130 0.00 0.00 30.27 3.69
81 82 5.163561 TGACTGGGTTGACAATTTCTCAAAC 60.164 40.000 3.02 3.02 35.00 2.93
82 83 4.952957 TGACTGGGTTGACAATTTCTCAAA 59.047 37.500 0.00 0.00 29.44 2.69
83 84 4.531854 TGACTGGGTTGACAATTTCTCAA 58.468 39.130 0.00 0.00 0.00 3.02
84 85 4.163441 TGACTGGGTTGACAATTTCTCA 57.837 40.909 0.00 0.00 0.00 3.27
85 86 5.514274 TTTGACTGGGTTGACAATTTCTC 57.486 39.130 0.00 0.00 0.00 2.87
86 87 5.930837 TTTTGACTGGGTTGACAATTTCT 57.069 34.783 0.00 0.00 0.00 2.52
87 88 6.018016 CCAATTTTGACTGGGTTGACAATTTC 60.018 38.462 0.00 0.00 0.00 2.17
88 89 5.821995 CCAATTTTGACTGGGTTGACAATTT 59.178 36.000 0.00 0.00 0.00 1.82
89 90 5.367302 CCAATTTTGACTGGGTTGACAATT 58.633 37.500 0.00 0.00 0.00 2.32
90 91 4.202346 CCCAATTTTGACTGGGTTGACAAT 60.202 41.667 0.00 0.00 46.37 2.71
91 92 3.133721 CCCAATTTTGACTGGGTTGACAA 59.866 43.478 0.00 0.00 46.37 3.18
92 93 2.697751 CCCAATTTTGACTGGGTTGACA 59.302 45.455 0.00 0.00 46.37 3.58
93 94 3.385193 CCCAATTTTGACTGGGTTGAC 57.615 47.619 0.00 0.00 46.37 3.18
99 100 1.273327 GGCTCACCCAATTTTGACTGG 59.727 52.381 0.00 0.00 0.00 4.00
100 101 1.962807 TGGCTCACCCAATTTTGACTG 59.037 47.619 0.00 0.00 41.82 3.51
101 102 2.380064 TGGCTCACCCAATTTTGACT 57.620 45.000 0.00 0.00 41.82 3.41
119 120 1.945394 CGAGGCCTCCAATTGAGATTG 59.055 52.381 27.20 4.28 44.42 2.67
120 121 1.839994 TCGAGGCCTCCAATTGAGATT 59.160 47.619 27.20 0.00 44.42 2.40
121 122 1.500474 TCGAGGCCTCCAATTGAGAT 58.500 50.000 27.20 0.00 44.42 2.75
122 123 1.414181 GATCGAGGCCTCCAATTGAGA 59.586 52.381 27.20 16.27 44.42 3.27
123 124 1.871408 CGATCGAGGCCTCCAATTGAG 60.871 57.143 27.20 11.13 41.07 3.02
124 125 0.104855 CGATCGAGGCCTCCAATTGA 59.895 55.000 27.20 17.75 0.00 2.57
125 126 0.104855 TCGATCGAGGCCTCCAATTG 59.895 55.000 27.20 21.92 0.00 2.32
126 127 0.830648 TTCGATCGAGGCCTCCAATT 59.169 50.000 27.20 9.10 0.00 2.32
127 128 1.051812 ATTCGATCGAGGCCTCCAAT 58.948 50.000 27.20 19.95 0.00 3.16
128 129 0.104855 CATTCGATCGAGGCCTCCAA 59.895 55.000 27.20 15.86 0.00 3.53
129 130 1.043116 ACATTCGATCGAGGCCTCCA 61.043 55.000 27.20 15.94 0.00 3.86
130 131 0.598680 CACATTCGATCGAGGCCTCC 60.599 60.000 27.20 12.23 0.00 4.30
131 132 0.385751 TCACATTCGATCGAGGCCTC 59.614 55.000 23.79 23.79 0.00 4.70
132 133 0.387202 CTCACATTCGATCGAGGCCT 59.613 55.000 18.54 3.86 0.00 5.19
133 134 1.218230 GCTCACATTCGATCGAGGCC 61.218 60.000 18.54 0.00 0.00 5.19
134 135 0.249238 AGCTCACATTCGATCGAGGC 60.249 55.000 18.54 15.22 0.00 4.70
135 136 1.336440 AGAGCTCACATTCGATCGAGG 59.664 52.381 18.54 16.44 0.00 4.63
136 137 2.772568 AGAGCTCACATTCGATCGAG 57.227 50.000 18.54 10.35 0.00 4.04
137 138 3.510388 AAAGAGCTCACATTCGATCGA 57.490 42.857 15.15 15.15 0.00 3.59
138 139 5.702622 TTTAAAGAGCTCACATTCGATCG 57.297 39.130 17.77 9.36 0.00 3.69
139 140 9.643652 CTAATTTTAAAGAGCTCACATTCGATC 57.356 33.333 17.77 0.00 0.00 3.69
140 141 8.125448 GCTAATTTTAAAGAGCTCACATTCGAT 58.875 33.333 17.77 0.00 32.04 3.59
141 142 7.464358 GCTAATTTTAAAGAGCTCACATTCGA 58.536 34.615 17.77 0.00 32.04 3.71
142 143 6.409185 CGCTAATTTTAAAGAGCTCACATTCG 59.591 38.462 17.77 1.96 32.60 3.34
143 144 7.464358 TCGCTAATTTTAAAGAGCTCACATTC 58.536 34.615 17.77 0.00 32.60 2.67
144 145 7.377766 TCGCTAATTTTAAAGAGCTCACATT 57.622 32.000 17.77 10.34 32.60 2.71
145 146 6.457528 GCTCGCTAATTTTAAAGAGCTCACAT 60.458 38.462 17.77 3.74 45.22 3.21
146 147 5.163854 GCTCGCTAATTTTAAAGAGCTCACA 60.164 40.000 17.77 0.00 45.22 3.58
147 148 5.259380 GCTCGCTAATTTTAAAGAGCTCAC 58.741 41.667 17.77 0.00 45.22 3.51
148 149 5.470845 GCTCGCTAATTTTAAAGAGCTCA 57.529 39.130 17.77 0.00 45.22 4.26
152 153 7.965045 ACACTAAGCTCGCTAATTTTAAAGAG 58.035 34.615 0.00 0.00 0.00 2.85
153 154 7.900782 ACACTAAGCTCGCTAATTTTAAAGA 57.099 32.000 0.00 0.00 0.00 2.52
154 155 8.015658 ACAACACTAAGCTCGCTAATTTTAAAG 58.984 33.333 0.00 0.00 0.00 1.85
155 156 7.867752 ACAACACTAAGCTCGCTAATTTTAAA 58.132 30.769 0.00 0.00 0.00 1.52
156 157 7.429636 ACAACACTAAGCTCGCTAATTTTAA 57.570 32.000 0.00 0.00 0.00 1.52
157 158 8.030692 TCTACAACACTAAGCTCGCTAATTTTA 58.969 33.333 0.00 0.00 0.00 1.52
158 159 5.941948 ACAACACTAAGCTCGCTAATTTT 57.058 34.783 0.00 0.00 0.00 1.82
159 160 6.395629 TCTACAACACTAAGCTCGCTAATTT 58.604 36.000 0.00 0.00 0.00 1.82
160 161 5.962433 TCTACAACACTAAGCTCGCTAATT 58.038 37.500 0.00 0.00 0.00 1.40
161 162 5.357314 TCTCTACAACACTAAGCTCGCTAAT 59.643 40.000 0.00 0.00 0.00 1.73
162 163 4.698780 TCTCTACAACACTAAGCTCGCTAA 59.301 41.667 0.00 0.00 0.00 3.09
163 164 4.259356 TCTCTACAACACTAAGCTCGCTA 58.741 43.478 0.00 0.00 0.00 4.26
164 165 3.082548 TCTCTACAACACTAAGCTCGCT 58.917 45.455 0.00 0.00 0.00 4.93
165 166 3.489180 TCTCTACAACACTAAGCTCGC 57.511 47.619 0.00 0.00 0.00 5.03
166 167 5.403246 ACATTCTCTACAACACTAAGCTCG 58.597 41.667 0.00 0.00 0.00 5.03
167 168 7.659652 AAACATTCTCTACAACACTAAGCTC 57.340 36.000 0.00 0.00 0.00 4.09
168 169 8.345565 CAAAAACATTCTCTACAACACTAAGCT 58.654 33.333 0.00 0.00 0.00 3.74
169 170 7.591426 CCAAAAACATTCTCTACAACACTAAGC 59.409 37.037 0.00 0.00 0.00 3.09
170 171 7.591426 GCCAAAAACATTCTCTACAACACTAAG 59.409 37.037 0.00 0.00 0.00 2.18
171 172 7.422399 GCCAAAAACATTCTCTACAACACTAA 58.578 34.615 0.00 0.00 0.00 2.24
172 173 6.016610 GGCCAAAAACATTCTCTACAACACTA 60.017 38.462 0.00 0.00 0.00 2.74
173 174 5.221244 GGCCAAAAACATTCTCTACAACACT 60.221 40.000 0.00 0.00 0.00 3.55
174 175 4.982295 GGCCAAAAACATTCTCTACAACAC 59.018 41.667 0.00 0.00 0.00 3.32
175 176 4.038642 GGGCCAAAAACATTCTCTACAACA 59.961 41.667 4.39 0.00 0.00 3.33
176 177 4.556233 GGGCCAAAAACATTCTCTACAAC 58.444 43.478 4.39 0.00 0.00 3.32
177 178 3.576550 GGGGCCAAAAACATTCTCTACAA 59.423 43.478 4.39 0.00 0.00 2.41
178 179 3.161866 GGGGCCAAAAACATTCTCTACA 58.838 45.455 4.39 0.00 0.00 2.74
179 180 2.496070 GGGGGCCAAAAACATTCTCTAC 59.504 50.000 4.39 0.00 0.00 2.59
180 181 2.381961 AGGGGGCCAAAAACATTCTCTA 59.618 45.455 4.39 0.00 0.00 2.43
181 182 1.149923 AGGGGGCCAAAAACATTCTCT 59.850 47.619 4.39 0.00 0.00 3.10
182 183 1.644509 AGGGGGCCAAAAACATTCTC 58.355 50.000 4.39 0.00 0.00 2.87
183 184 2.116869 AAGGGGGCCAAAAACATTCT 57.883 45.000 4.39 0.00 0.00 2.40
184 185 2.371841 AGAAAGGGGGCCAAAAACATTC 59.628 45.455 4.39 0.00 0.00 2.67
185 186 2.417652 AGAAAGGGGGCCAAAAACATT 58.582 42.857 4.39 0.00 0.00 2.71
189 190 1.492599 CCAAAGAAAGGGGGCCAAAAA 59.507 47.619 4.39 0.00 0.00 1.94
195 196 0.396435 CCAAACCAAAGAAAGGGGGC 59.604 55.000 0.00 0.00 0.00 5.80
198 199 6.664428 TTAATCTCCAAACCAAAGAAAGGG 57.336 37.500 0.00 0.00 0.00 3.95
211 212 7.125053 AGGGCGGATTTTAATTTTAATCTCCAA 59.875 33.333 16.20 0.00 32.60 3.53
212 213 6.609616 AGGGCGGATTTTAATTTTAATCTCCA 59.390 34.615 16.20 0.00 32.60 3.86
231 233 2.294979 GGTTTCTACCAATAAGGGCGG 58.705 52.381 0.00 0.00 44.36 6.13
242 244 6.151144 AGTTAATGCAGAACATGGTTTCTACC 59.849 38.462 14.72 0.00 45.26 3.18
243 245 7.094805 TGAGTTAATGCAGAACATGGTTTCTAC 60.095 37.037 14.72 0.00 39.60 2.59
245 247 5.769662 TGAGTTAATGCAGAACATGGTTTCT 59.230 36.000 14.72 0.00 39.60 2.52
246 248 6.012658 TGAGTTAATGCAGAACATGGTTTC 57.987 37.500 14.72 5.06 39.60 2.78
259 261 7.971455 ACGGTAGAAGTTTAATGAGTTAATGC 58.029 34.615 0.00 0.00 30.34 3.56
270 272 6.513720 GCATGGTTTTGACGGTAGAAGTTTAA 60.514 38.462 0.00 0.00 0.00 1.52
275 277 2.161609 GGCATGGTTTTGACGGTAGAAG 59.838 50.000 0.00 0.00 0.00 2.85
277 279 1.612199 GGGCATGGTTTTGACGGTAGA 60.612 52.381 0.00 0.00 0.00 2.59
278 280 0.808755 GGGCATGGTTTTGACGGTAG 59.191 55.000 0.00 0.00 0.00 3.18
281 283 1.288752 GTGGGCATGGTTTTGACGG 59.711 57.895 0.00 0.00 0.00 4.79
282 284 0.602562 ATGTGGGCATGGTTTTGACG 59.397 50.000 0.00 0.00 33.37 4.35
283 285 2.837532 AATGTGGGCATGGTTTTGAC 57.162 45.000 0.00 0.00 35.15 3.18
355 359 5.103728 TGGATATGGATAGGGCAAAACAAGA 60.104 40.000 0.00 0.00 0.00 3.02
364 368 5.574188 AGTTGATTTGGATATGGATAGGGC 58.426 41.667 0.00 0.00 0.00 5.19
397 403 9.691362 GATGCTTTCTATTTTGTTTAGGTTTGA 57.309 29.630 0.00 0.00 0.00 2.69
405 411 8.962884 AAACAAGGATGCTTTCTATTTTGTTT 57.037 26.923 0.00 0.10 0.00 2.83
415 421 6.183360 GGATAGAGGAAAACAAGGATGCTTTC 60.183 42.308 0.00 0.00 39.70 2.62
419 425 4.526970 TGGATAGAGGAAAACAAGGATGC 58.473 43.478 0.00 0.00 0.00 3.91
420 426 7.609532 GGATATGGATAGAGGAAAACAAGGATG 59.390 40.741 0.00 0.00 0.00 3.51
422 428 6.619437 TGGATATGGATAGAGGAAAACAAGGA 59.381 38.462 0.00 0.00 0.00 3.36
539 560 1.975660 TTGCCACCTAAGACAACCAC 58.024 50.000 0.00 0.00 0.00 4.16
542 563 5.010213 TGGTAAATTTGCCACCTAAGACAAC 59.990 40.000 22.45 0.00 38.05 3.32
543 564 5.141182 TGGTAAATTTGCCACCTAAGACAA 58.859 37.500 22.45 0.00 38.05 3.18
547 568 7.164230 TGTATTGGTAAATTTGCCACCTAAG 57.836 36.000 25.49 0.00 42.80 2.18
548 569 7.726033 ATGTATTGGTAAATTTGCCACCTAA 57.274 32.000 25.49 12.93 42.80 2.69
550 571 7.784550 AGATATGTATTGGTAAATTTGCCACCT 59.215 33.333 25.49 18.07 42.80 4.00
551 572 7.951591 AGATATGTATTGGTAAATTTGCCACC 58.048 34.615 25.49 16.76 42.80 4.61
559 580 9.841295 ACCGTTGTAAGATATGTATTGGTAAAT 57.159 29.630 0.00 0.00 0.00 1.40
560 581 9.669887 AACCGTTGTAAGATATGTATTGGTAAA 57.330 29.630 0.00 0.00 0.00 2.01
561 582 9.100554 CAACCGTTGTAAGATATGTATTGGTAA 57.899 33.333 2.87 0.00 0.00 2.85
565 586 9.093970 TCTTCAACCGTTGTAAGATATGTATTG 57.906 33.333 11.01 0.00 0.00 1.90
567 588 9.261180 CATCTTCAACCGTTGTAAGATATGTAT 57.739 33.333 23.71 10.77 36.40 2.29
571 592 5.527582 GGCATCTTCAACCGTTGTAAGATAT 59.472 40.000 23.71 12.11 36.40 1.63
572 593 4.873827 GGCATCTTCAACCGTTGTAAGATA 59.126 41.667 23.71 10.34 36.40 1.98
573 594 3.689649 GGCATCTTCAACCGTTGTAAGAT 59.310 43.478 21.16 21.16 37.68 2.40
575 596 2.161609 GGGCATCTTCAACCGTTGTAAG 59.838 50.000 11.01 12.33 0.00 2.34
578 599 0.110486 AGGGCATCTTCAACCGTTGT 59.890 50.000 11.01 0.00 0.00 3.32
582 603 1.006832 CGTTAGGGCATCTTCAACCG 58.993 55.000 0.00 0.00 0.00 4.44
583 604 0.733150 GCGTTAGGGCATCTTCAACC 59.267 55.000 0.00 0.00 0.00 3.77
584 605 1.448985 TGCGTTAGGGCATCTTCAAC 58.551 50.000 0.00 0.00 38.17 3.18
585 606 2.192664 TTGCGTTAGGGCATCTTCAA 57.807 45.000 0.00 0.00 43.52 2.69
586 607 2.016318 CATTGCGTTAGGGCATCTTCA 58.984 47.619 0.00 0.00 43.52 3.02
587 608 1.334869 CCATTGCGTTAGGGCATCTTC 59.665 52.381 0.00 0.00 43.52 2.87
589 610 0.255890 ACCATTGCGTTAGGGCATCT 59.744 50.000 0.00 0.00 43.52 2.90
593 614 2.469516 CCGACCATTGCGTTAGGGC 61.470 63.158 0.00 0.00 0.00 5.19
595 616 1.366111 CCACCGACCATTGCGTTAGG 61.366 60.000 0.00 0.00 0.00 2.69
596 617 0.390603 TCCACCGACCATTGCGTTAG 60.391 55.000 0.00 0.00 0.00 2.34
597 618 0.390603 CTCCACCGACCATTGCGTTA 60.391 55.000 0.00 0.00 0.00 3.18
598 619 1.671054 CTCCACCGACCATTGCGTT 60.671 57.895 0.00 0.00 0.00 4.84
600 621 2.593468 ATCCTCCACCGACCATTGCG 62.593 60.000 0.00 0.00 0.00 4.85
601 622 1.097547 CATCCTCCACCGACCATTGC 61.098 60.000 0.00 0.00 0.00 3.56
602 623 0.541392 TCATCCTCCACCGACCATTG 59.459 55.000 0.00 0.00 0.00 2.82
603 624 0.541863 GTCATCCTCCACCGACCATT 59.458 55.000 0.00 0.00 0.00 3.16
604 625 1.338136 GGTCATCCTCCACCGACCAT 61.338 60.000 0.00 0.00 45.96 3.55
605 626 1.987855 GGTCATCCTCCACCGACCA 60.988 63.158 0.00 0.00 45.96 4.02
655 1235 4.249631 TACAGCACTCTCTGTGTGTGTCT 61.250 47.826 11.89 7.84 45.95 3.41
657 1237 2.031870 TACAGCACTCTCTGTGTGTGT 58.968 47.619 11.89 10.47 45.95 3.72
658 1238 2.035193 AGTACAGCACTCTCTGTGTGTG 59.965 50.000 6.67 7.37 45.95 3.82
666 1246 2.520979 CGCTTGTAGTACAGCACTCTC 58.479 52.381 18.54 1.33 38.80 3.20
668 1248 1.630148 CCGCTTGTAGTACAGCACTC 58.370 55.000 18.54 3.68 38.80 3.51
675 1257 0.806492 GGCAGAGCCGCTTGTAGTAC 60.806 60.000 0.00 0.00 39.62 2.73
696 1279 3.805307 CAGCCTCTCTCGTCGCGT 61.805 66.667 5.77 0.00 0.00 6.01
720 1303 1.942271 AGATCTGGGATCCGGGTCT 59.058 57.895 15.87 11.84 44.83 3.85
747 1335 8.144478 TCGAGGATCATTTTTCTTCTATGGTAG 58.856 37.037 0.00 0.00 33.17 3.18
752 1340 5.986135 CGGTCGAGGATCATTTTTCTTCTAT 59.014 40.000 0.00 0.00 33.17 1.98
1068 1673 2.480555 GAAACCATCCGCAGCACG 59.519 61.111 0.00 0.00 43.15 5.34
1355 1969 1.307097 GAATGCACCAGATCCTCAGC 58.693 55.000 0.00 0.00 0.00 4.26
1421 2036 3.062639 CCATCAAATCGCCTATATCGCAC 59.937 47.826 0.00 0.00 0.00 5.34
1422 2037 3.261580 CCATCAAATCGCCTATATCGCA 58.738 45.455 0.00 0.00 0.00 5.10
1479 2095 1.933052 GCAATACACGCAAAACCCCAC 60.933 52.381 0.00 0.00 0.00 4.61
1690 2390 3.796504 GCAGTCAAACACACATTCCCAAG 60.797 47.826 0.00 0.00 0.00 3.61
1695 2395 5.042593 TCAAATGCAGTCAAACACACATTC 58.957 37.500 0.00 0.00 34.55 2.67
1744 2444 3.385577 GAAAGGTCCTATGATCGCACTC 58.614 50.000 0.00 0.00 0.00 3.51
1764 2472 7.595819 AGTTTTGATTCCATACACAAAAGGA 57.404 32.000 0.00 0.00 40.92 3.36
1786 2500 4.721132 TCGTAAACCCAAATTCTCCAAGT 58.279 39.130 0.00 0.00 0.00 3.16
1867 2581 0.625849 TGCCTTTCCAGAATCTCCCC 59.374 55.000 0.00 0.00 0.00 4.81
2307 3021 6.760770 GCATATTCTCCAGAGATAAGGCATAC 59.239 42.308 0.00 0.00 37.29 2.39
2375 3089 5.738619 TCTACATCTCACAGCTTGGTTTA 57.261 39.130 0.00 0.00 0.00 2.01
2429 3145 6.317789 ACACATGATGAGAAACAAACGAAT 57.682 33.333 0.00 0.00 0.00 3.34
3106 3824 8.652810 AGAATGACAAGAAAACATGGAAAAAG 57.347 30.769 0.00 0.00 0.00 2.27
3107 3825 8.881743 CAAGAATGACAAGAAAACATGGAAAAA 58.118 29.630 0.00 0.00 0.00 1.94
3108 3826 8.256605 TCAAGAATGACAAGAAAACATGGAAAA 58.743 29.630 0.00 0.00 0.00 2.29
3109 3827 7.780064 TCAAGAATGACAAGAAAACATGGAAA 58.220 30.769 0.00 0.00 0.00 3.13
3110 3828 7.345422 TCAAGAATGACAAGAAAACATGGAA 57.655 32.000 0.00 0.00 0.00 3.53
3111 3829 6.957920 TCAAGAATGACAAGAAAACATGGA 57.042 33.333 0.00 0.00 0.00 3.41
3112 3830 6.525628 CGATCAAGAATGACAAGAAAACATGG 59.474 38.462 0.00 0.00 38.69 3.66
3113 3831 6.033196 GCGATCAAGAATGACAAGAAAACATG 59.967 38.462 0.00 0.00 38.69 3.21
3120 3838 3.125829 GCAAGCGATCAAGAATGACAAGA 59.874 43.478 0.00 0.00 38.69 3.02
3129 3847 5.928839 GGATAAATAGAGCAAGCGATCAAGA 59.071 40.000 0.00 0.00 0.00 3.02
3137 3855 5.936956 AGTATGCAGGATAAATAGAGCAAGC 59.063 40.000 0.00 0.00 35.45 4.01
3165 3883 5.061311 GTCAATTGGATGAAAATCAACTGCG 59.939 40.000 5.42 0.00 0.00 5.18
3195 3913 9.540538 ACTACTATCAGCATTTAGTAGATGGAT 57.459 33.333 23.03 1.54 45.60 3.41
3234 3952 9.896645 ACATGAAGATATATGAAAACACTCAGT 57.103 29.630 0.00 0.00 0.00 3.41
3263 3981 4.065789 CCTAAACCAGAGACTTGTTCCAC 58.934 47.826 0.00 0.00 0.00 4.02
3264 3982 3.496160 GCCTAAACCAGAGACTTGTTCCA 60.496 47.826 0.00 0.00 0.00 3.53
3265 3983 3.075148 GCCTAAACCAGAGACTTGTTCC 58.925 50.000 0.00 0.00 0.00 3.62
3266 3984 3.498777 GTGCCTAAACCAGAGACTTGTTC 59.501 47.826 0.00 0.00 0.00 3.18
3267 3985 3.136626 AGTGCCTAAACCAGAGACTTGTT 59.863 43.478 0.00 0.00 0.00 2.83
3268 3986 2.706190 AGTGCCTAAACCAGAGACTTGT 59.294 45.455 0.00 0.00 0.00 3.16
3276 3994 3.055094 ACCAGTGATAGTGCCTAAACCAG 60.055 47.826 0.00 0.00 0.00 4.00
3293 4011 9.167311 GAAATTCACATGTAAATCTAGACCAGT 57.833 33.333 0.00 0.00 0.00 4.00
3498 4217 6.274157 AGTGTATGGTATCGAGATGGATTC 57.726 41.667 0.00 0.00 0.00 2.52
3712 4432 7.567952 GCAATTGACCACGTGTTTAAAATTACC 60.568 37.037 15.65 4.77 0.00 2.85
3727 4447 8.757789 CATTCATTATGTATTGCAATTGACCAC 58.242 33.333 18.75 9.76 0.00 4.16
3856 4591 3.788797 GCTTGCAGATGCGTTGGTATTAC 60.789 47.826 0.00 0.00 45.83 1.89
4029 4764 5.809051 CCTATTACTTAAACACTGTCGGGTC 59.191 44.000 0.00 0.00 0.00 4.46
4041 4776 8.116651 TGCAACATTCAAGCCTATTACTTAAA 57.883 30.769 0.00 0.00 0.00 1.52
4145 4899 4.953667 TCTCAATCGATCAGGGAAATCAG 58.046 43.478 0.00 0.00 0.00 2.90
4150 4904 3.769300 TCAGTTCTCAATCGATCAGGGAA 59.231 43.478 8.57 8.57 0.00 3.97
4166 4920 6.166982 ACTGTTTAGGCTACTGAATCAGTTC 58.833 40.000 21.83 13.10 42.59 3.01
4192 4946 0.994247 ATGCTGAACATGACAGGGGA 59.006 50.000 19.70 4.54 37.70 4.81
4197 4951 4.223700 AGGAGTTAGATGCTGAACATGACA 59.776 41.667 0.00 0.00 39.84 3.58
4198 4952 4.764172 AGGAGTTAGATGCTGAACATGAC 58.236 43.478 0.00 0.00 39.84 3.06
4199 4953 5.423015 GAAGGAGTTAGATGCTGAACATGA 58.577 41.667 0.00 0.00 39.84 3.07
4200 4954 4.574013 GGAAGGAGTTAGATGCTGAACATG 59.426 45.833 0.00 0.00 39.84 3.21
4201 4955 4.384647 GGGAAGGAGTTAGATGCTGAACAT 60.385 45.833 0.00 0.00 43.54 2.71
4202 4956 3.055094 GGGAAGGAGTTAGATGCTGAACA 60.055 47.826 0.00 0.00 0.00 3.18
4203 4957 3.055094 TGGGAAGGAGTTAGATGCTGAAC 60.055 47.826 0.00 0.00 0.00 3.18
4444 5211 4.668576 TCGCTTTCAAAACTGCTGATAG 57.331 40.909 0.00 0.00 0.00 2.08
4448 5215 4.838665 TTTTTCGCTTTCAAAACTGCTG 57.161 36.364 0.00 0.00 0.00 4.41
4487 5255 8.977412 CCACATATTATACCCCAAAGAAAAACT 58.023 33.333 0.00 0.00 0.00 2.66
4491 5259 6.987557 ACCCACATATTATACCCCAAAGAAA 58.012 36.000 0.00 0.00 0.00 2.52
4504 5272 8.950480 TCCAGGATTATTTGTACCCACATATTA 58.050 33.333 0.00 0.00 33.76 0.98
4511 5279 5.628200 CGACTTCCAGGATTATTTGTACCCA 60.628 44.000 0.00 0.00 0.00 4.51
4599 5367 9.535878 CAAACAGCCTTTATTTACCAAGTTTAA 57.464 29.630 0.00 0.00 0.00 1.52
4641 5409 5.504010 GCAAAAAGAACACGTCAGATTGAGA 60.504 40.000 0.00 0.00 0.00 3.27
4690 5458 5.163519 CCAACCAAATCTTCTCTGTGTGTTT 60.164 40.000 0.00 0.00 0.00 2.83
4691 5459 4.339247 CCAACCAAATCTTCTCTGTGTGTT 59.661 41.667 0.00 0.00 0.00 3.32
4692 5460 3.885297 CCAACCAAATCTTCTCTGTGTGT 59.115 43.478 0.00 0.00 0.00 3.72
4693 5461 4.136796 TCCAACCAAATCTTCTCTGTGTG 58.863 43.478 0.00 0.00 0.00 3.82
4745 5513 4.314740 TTGTTGGTGAGGTTGCAATTAC 57.685 40.909 0.59 0.00 0.00 1.89
4841 5609 4.575885 TCAAAGACACTGCAGGTAATACC 58.424 43.478 19.93 0.07 38.99 2.73
4843 5611 5.472137 GGTTTCAAAGACACTGCAGGTAATA 59.528 40.000 19.93 0.00 0.00 0.98
5016 5784 9.399403 GAAAAGTTGTCAGTGGAAAAAGATATC 57.601 33.333 0.00 0.00 0.00 1.63
5017 5785 9.136323 AGAAAAGTTGTCAGTGGAAAAAGATAT 57.864 29.630 0.00 0.00 0.00 1.63
5019 5787 7.410120 AGAAAAGTTGTCAGTGGAAAAAGAT 57.590 32.000 0.00 0.00 0.00 2.40
5020 5788 6.834168 AGAAAAGTTGTCAGTGGAAAAAGA 57.166 33.333 0.00 0.00 0.00 2.52
5021 5789 7.889589 AAAGAAAAGTTGTCAGTGGAAAAAG 57.110 32.000 0.00 0.00 0.00 2.27
5120 5896 7.400599 TTGTAGTTGTCGTTAGATGGTCTAT 57.599 36.000 0.00 0.00 0.00 1.98
5132 5908 7.749126 GCTTGCTTTAATATTTGTAGTTGTCGT 59.251 33.333 0.00 0.00 0.00 4.34
5137 5913 9.423061 CTTTGGCTTGCTTTAATATTTGTAGTT 57.577 29.630 0.00 0.00 0.00 2.24
5160 5936 2.350522 GACATGACAGATCACGCCTTT 58.649 47.619 0.00 0.00 37.79 3.11
5166 5942 6.662414 TTATTTTCGGACATGACAGATCAC 57.338 37.500 0.00 0.00 37.79 3.06
5202 5978 5.676331 GCCGAATCAAACCTCCTATGAAAAC 60.676 44.000 0.00 0.00 0.00 2.43
5214 5990 4.759516 TTTCTAACTGCCGAATCAAACC 57.240 40.909 0.00 0.00 0.00 3.27
5271 6047 0.391263 CCAGGTAAAGTCCAGCCGAC 60.391 60.000 0.00 0.00 42.32 4.79
5370 6146 9.594478 AACCACTTTTTAGAGGTGTAAAATTTG 57.406 29.630 0.00 0.00 33.07 2.32
5374 6150 8.586744 ACAAAACCACTTTTTAGAGGTGTAAAA 58.413 29.630 0.00 0.00 35.03 1.52
5381 6157 7.860872 GTGATGTACAAAACCACTTTTTAGAGG 59.139 37.037 0.00 0.00 35.03 3.69
5383 6159 7.339721 TGGTGATGTACAAAACCACTTTTTAGA 59.660 33.333 22.64 3.89 37.77 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.